Citrus Sinensis ID: 000553
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1428 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SKX0 | 1410 | ABC transporter C family | yes | no | 0.949 | 0.961 | 0.639 | 0.0 | |
| Q5T3U5 | 1492 | Multidrug resistance-asso | yes | no | 0.835 | 0.799 | 0.384 | 0.0 | |
| Q8R4P9 | 1501 | Multidrug resistance-asso | yes | no | 0.862 | 0.820 | 0.370 | 0.0 | |
| Q63120 | 1541 | Canalicular multispecific | no | no | 0.778 | 0.720 | 0.359 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | no | no | 0.773 | 0.714 | 0.361 | 0.0 | |
| Q28689 | 1564 | Canalicular multispecific | no | no | 0.773 | 0.706 | 0.355 | 0.0 | |
| B2RX12 | 1523 | Canalicular multispecific | no | no | 0.789 | 0.740 | 0.344 | 0.0 | |
| O35379 | 1528 | Multidrug resistance-asso | no | no | 0.796 | 0.744 | 0.343 | 0.0 | |
| Q8CG09 | 1532 | Multidrug resistance-asso | no | no | 0.797 | 0.743 | 0.344 | 0.0 | |
| O15438 | 1527 | Canalicular multispecific | no | no | 0.790 | 0.739 | 0.346 | 0.0 |
| >sp|Q9SKX0|AB13C_ARATH ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 1785 bits (4622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1444 (63%), Positives = 1110/1444 (76%), Gaps = 88/1444 (6%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDCNT-DSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW 256
N S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CW
Sbjct: 191 RIVRRLFLEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCW 250
Query: 257 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 316
Q Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 251 QLQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK--------- 301
Query: 317 DGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 376
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+G
Sbjct: 302 ----------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEG 345
Query: 377 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 436
EIQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNK
Sbjct: 346 EIQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNK 405
Query: 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 496
WI+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+T
Sbjct: 406 WISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLAT 465
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
RKYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVI
Sbjct: 466 RKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVI 525
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 616
NGLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 526 NGLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWS 574
Query: 617 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY 676
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AY
Sbjct: 575 SNVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAY 634
Query: 677 VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736
VPQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSG
Sbjct: 635 VPQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSG 694
Query: 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796
GQRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QA
Sbjct: 695 GQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQA 754
Query: 797 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANK 854
IS ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 755 ISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------E 805
Query: 855 QILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQAS 914
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ S
Sbjct: 806 TLSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGS 865
Query: 915 RNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974
RNGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV V
Sbjct: 866 RNGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHV 925
Query: 975 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL 1034
HN L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVL
Sbjct: 926 HNALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVL 985
Query: 1035 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094
SYVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAF
Sbjct: 986 SYVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAF 1045
Query: 1095 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ------------------------ 1130
KSE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQ
Sbjct: 1046 KSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPI 1105
Query: 1131 -------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1183
VGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1106 SFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLS 1165
Query: 1184 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1243
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLT
Sbjct: 1166 DKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLT 1225
Query: 1244 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
P+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+
Sbjct: 1226 PVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILD 1285
Query: 1304 KCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
KC VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TA
Sbjct: 1286 KCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTA 1345
Query: 1363 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1422
S+L N ISSECKG+TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSF
Sbjct: 1346 SLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSF 1405
Query: 1423 VRAS 1426
VRAS
Sbjct: 1406 VRAS 1409
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Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q5T3U5|MRP7_HUMAN Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/1315 (38%), Positives = 724/1315 (55%), Gaps = 122/1315 (9%)
Query: 178 ASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQL-DFEDL 236
R +E LL D + E + + +S+ ++ + ++ RG +L +D+
Sbjct: 193 GGPREPWAQEPLLPEDQEPEV-----AEDGESWLSRFSYAWLAPLLARGACGELRQPQDI 247
Query: 237 LGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGF 296
LP + P+ + WQ L RA+ A+G Y+ LGLLK+V +GF
Sbjct: 248 CRLPHRLQPTYLARVFQAHWQ-------EGARLWRALYGAFGRCYLALGLLKLVGTMLGF 300
Query: 297 AGPLLLNKLIKFLQQGSGHLD-GYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM 355
+GPLLL+ L+ FL++G L G + A+ L ++L + QY + + K+ L+ R +++
Sbjct: 301 SGPLLLSLLVGFLEEGQEPLSHGLLYALGLAGGAVLGAVLQNQYGYEVYKVTLQARGAVL 360
Query: 356 TIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYT 415
I+Y K L + S GE + D++R +N A SFH+AW LP Q+ + LYLLY
Sbjct: 361 NILYCKALQL---GPSRPPTGEALNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQ 417
Query: 416 QVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGW 475
QV AFV GL + +LL+PVNK IA I + ++M++ KD R++ E+L+ IR +K GW
Sbjct: 418 QVGVAFVGGLILALLLVPVNKVIATRIMASNQEMLQHKDARVKLVTELLSGIRVIKFCGW 477
Query: 476 EQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMV 535
EQ + + R+ E+ L KYLDA CV+ WA P + S+ F + LMGHQL A V
Sbjct: 478 EQALGARVEACRARELGRLRVIKYLDAACVYLWAALPVVISIVIFITYVLMGHQLTATKV 537
Query: 536 FTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNG 595
FT LAL LI PLN+FPWVINGL++A +S+ R+ FL + + + + P+ S
Sbjct: 538 FTALALVRMLILPLNNFPWVINGLLEAKVSLDRIQLFLDLPNHNPQAYYSPDPPAEPSTV 597
Query: 596 LSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN 655
L + A SW + + + L + KG LV ++G+VG GKSSLL
Sbjct: 598 LE----------LHGALFSWDPVGTSLETFISH---LEVKKGMLVGIVGKVGCGKSSLLA 644
Query: 656 SILGEMMLTHGSIHASG---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL 712
+I GE+ G + G Q PWI TIRDNILFGK +D Q Y E L+AC L
Sbjct: 645 AIAGELHRLRGHVAVRGLSKGFGLATQEPWIQFATIRDNILFGKTFDAQLYKEVLEACAL 704
Query: 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI 772
+ D+S++ GD +GEKGV LSGGQRAR+ALARAVY ++Y+LDD L+AVDA VA +
Sbjct: 705 NDDLSILPAGDQTEVGEKGVTLSGGQRARIALARAVYQEKELYLLDDPLAAVDADVANHL 764
Query: 773 LSNAIMGPHMLQ-KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFW 829
L I+G ML TR+LCTH + + AD V++M+ G++ G +++ V W
Sbjct: 765 LHRCILG--MLSYTTRLLCTHRTEYLERADAVLLMEAGRLIRAGPPSEILPLVQAVPKAW 822
Query: 830 STN--EFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELT 887
+ N E D++ Q K+ L +E+ + +++ E +KEG V L
Sbjct: 823 AENGQESDSATAQSVQN-----PEKTKEGLEEEQST------SGRLLQEESKKEGAVALH 871
Query: 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT----TGSSQTKYSTS---- 939
VY+ Y K G + L I S +LMQA+RN D WLS+W+ S + + STS
Sbjct: 872 VYQAYWKAVGQGLALAILFSLLLMQATRNAADWWLSHWISQLKAENSSQEAQPSTSPASM 931
Query: 940 ----------------------------------FYLVVLCIFCMFNSFLTLVRAFSFAF 965
FYL V NS TL+RA FA
Sbjct: 932 GLFSPQLLLFSPGNLYIPVFPLPKAAPNGSSDIRFYLTVYATIAGVNSLCTLLRAVLFAA 991
Query: 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFV 1025
G+L+AA +H LL +++ APV FF+ TP GRILNRFSSD+ DDSLPFILNILLAN
Sbjct: 992 GTLQAAATLHRRLLHRVLMAPVTFFNATPTGRILNRFSSDVACADDSLPFILNILLANAA 1051
Query: 1026 GLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETL 1085
GLLG+ VL + LLLL P +Y +Q YR++SRELRRL S++ SP+Y+ +TL
Sbjct: 1052 GLLGLLAVLGSGLPWLLLLLPPLSIMYYHVQRHYRASSRELRRLGSLTLSPLYSHLADTL 1111
Query: 1086 NGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ--------------- 1130
G S +RA + F + + L QR ++ WL +RLQ
Sbjct: 1112 AGLSVLRATGATYRFEEENLRLLELNQRCQFATSATMQWLDIRLQLMGAAVVSAIAGIAL 1171
Query: 1131 ------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM-DVPQEELC 1177
VGL+LSYA + LL +SSFT+TE +VS+ER+ EY D+PQE
Sbjct: 1172 VQHQQGLANPGLVGLSLSYALSLTGLLSGLVSSFTQTEAMLVSVERLEEYTCDLPQEPQG 1231
Query: 1178 GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1237
L W QG +EFQ+V + Y+P LP AL + F ++ G ++GIVGRTG+GKSS+L
Sbjct: 1232 QPLQLGTGWLTQGGVEFQDVVLAYRPGLPNALDGVTFCVQPGEKLGIVGRTGSGKSSLLL 1291
Query: 1238 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1297
LFRL G++L+DG++ + LR + A++PQ PFLF G++R+NLDP ++ D
Sbjct: 1292 VLFRLLEPSSGRVLLDGVDTSQLELAQLRSQLAIIPQEPFLFSGTVRENLDPQGLHKDRA 1351
Query: 1298 IWSVLEKCHVKEEVEAVGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
+W L++CH+ E + ++G G S S+GQRQL+CLARALL +K+LC+DE TA+
Sbjct: 1352 LWQALKQCHLSEVITSMGGLDGELGEGGRSLSLGQRQLLCLARALLTDAKILCIDEATAS 1411
Query: 1357 VDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1411
VD +T +LQ I TV+TIAHR++T+LN D +L+L G +VE +P TL
Sbjct: 1412 VDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDSPATL 1466
|
ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion. Homo sapiens (taxid: 9606) |
| >sp|Q8R4P9|MRP7_MOUSE Multidrug resistance-associated protein 7 OS=Mus musculus GN=Abcc10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/1360 (37%), Positives = 744/1360 (54%), Gaps = 129/1360 (9%)
Query: 141 QLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDC 200
Q TF + L +CL++L + ++ + + + LS + E
Sbjct: 156 QRGTFLPPLLPGPLGRVCLLILQLAAVLAYGLGWAAPGGPQEPWTHDPFLSSESQETEVA 215
Query: 201 NTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLD-FEDLLGLPTDMDPSTCHSKLLSCWQAQ 259
+ +S+ ++ + ++ RGV +L D LP + P+ + W+
Sbjct: 216 E----DGESWLSRFSYAWLAPLLARGVRGELQQPRDTCRLPRRLHPAFLARVFQAHWK-- 269
Query: 260 RSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG- 318
L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L
Sbjct: 270 -----EGAQLWRALYRAFGCCYLALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSHG 324
Query: 319 --YVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 376
YVL +A G +++ + QY + + K+ L+ R ++++ +Y+K L + S G
Sbjct: 325 LLYVLGLAGG--TVISAVLQNQYGYEVRKVTLQARVAVLSTLYRKALKL---GPSRPPTG 379
Query: 377 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 436
E+ + D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVNK
Sbjct: 380 EVLNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGMAFLAGLVLALLLVPVNK 439
Query: 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 496
IA I + ++M++ KD R++ E+L+ IR +K + WEQ + R+ E+ L
Sbjct: 440 VIATRIMASNQEMLRHKDARVKLMTELLSGIRVIKFFRWEQALGDRVKACRTKELGRLRV 499
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
KYLDA CV+ WA P + + F + LMGHQL A VFT LAL LI PLN+FPWVI
Sbjct: 500 IKYLDAACVYLWAALPVVICITIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWVI 559
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 616
NGL+++ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 560 NGLLESKVSLDRIQRFLDLPSYSPEAYYSPDPPAEPSTALE----------LHEALFSWD 609
Query: 617 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGS 673
++ + + L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 610 PIGASQKTFISH---LQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSELSKG 666
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
Q PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV
Sbjct: 667 FGLATQEPWIQCATIRDNILFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGVT 726
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LSGGQRAR+ALARAVY +Y+LDD L+AVDA VA +L I+G + TR+LCTH
Sbjct: 727 LSGGQRARIALARAVYQEKALYLLDDPLAAVDADVANHLLHRCILG-VLSHTTRLLCTHR 785
Query: 794 VQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 851
+ + AD+V++M+ GQ+ G +++ V W+ +K+++ T+ S
Sbjct: 786 TEYLERADVVLLMEAGQLVRTGPPSEILPLVQAVPTAWA----------EKEQVATSGQS 835
Query: 852 AN--KQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAI 909
+ E+++ +++ E + EG V L VY+ Y + G + I +S +
Sbjct: 836 PSVCDLERTTEEELEVEQSTCGCLVQEESKSEGAVALHVYRAYWRAMGSGLAAAILVSLL 895
Query: 910 LMQASRNGNDLWLSYWVDT-----TGSSQTKYSTS------------------------- 939
LMQA+RNG D WL++W+ GS + S S
Sbjct: 896 LMQATRNGADWWLAHWLSQLKAGRNGSREDPASCSPGSTALFSPRLLLFSPGNLYTPLLS 955
Query: 940 ---------------FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984
FYL+V NS TL+RA FA G+L+AA +H+ LL +++
Sbjct: 956 TPLHKAASNGTADVHFYLIVYATIAGVNSLCTLLRAVLFAAGALQAAASLHHRLLHRLLM 1015
Query: 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1044
APV F+D TP GR+LNRFSSD+ +DDSLPF+LNILLAN VGLLG+ VL + LLL
Sbjct: 1016 APVTFYDSTPSGRVLNRFSSDVACVDDSLPFLLNILLANSVGLLGLLAVLGSGLPWLLLL 1075
Query: 1045 LVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1104
L P F+Y +Q +YR++ RELRRL S++ SP+Y+ +TL G +RA + F +
Sbjct: 1076 LPPLSFVYYSVQGYYRASFRELRRLGSLTWSPLYSHLADTLAGLPVLRAAGATYRFEEEN 1135
Query: 1105 KEHVVLYQRTSYSELTASLWLSLRLQ---------------------------VGLALSY 1137
+ + L QR ++ WL +RLQ VGL LSY
Sbjct: 1136 QRLLELNQRCQFASYATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGLANPGLVGLVLSY 1195
Query: 1138 AAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQE----ELCGYQSLSPDWPFQGLI 1192
A + LL +SSFT+TE MVS+ER+ EY DVPQE L W QG +
Sbjct: 1196 ALSLTGLLSGLVSSFTQTEAMMVSVERLEEYSCDVPQEPHSQPLQSPHQQRISWLTQGSV 1255
Query: 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252
EFQ+V + Y+P LP AL + F +E G ++GIVGRTG+GKSS+ LFRL G++L+
Sbjct: 1256 EFQDVVLVYRPGLPNALDGVTFRVEPGEKLGIVGRTGSGKSSLFLVLFRLLEPNAGRVLL 1315
Query: 1253 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1312
D ++ + +LR + AV+PQ PFLF G++R+NLDP +++D +W LE+CH+ E
Sbjct: 1316 DNVDTSQLELAELRSQLAVIPQEPFLFSGTIRENLDPQGLHEDRALWQALEQCHLSEVAV 1375
Query: 1313 AV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1371
A+ GL+ + E G + S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ I
Sbjct: 1376 AMGGLDGELGERGQNLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICK 1435
Query: 1372 ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1411
TV+TIAHR++T+LN D +L+L G +VE +P L
Sbjct: 1436 RFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDSPSAL 1475
|
ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion. Mus musculus (taxid: 10090) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1226 (35%), Positives = 680/1226 (55%), Gaps = 115/1226 (9%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 344
+LK+++D + F P LL LI F++ + ++ GY+ AI + ++++SF Y H
Sbjct: 323 ILKLIHDLLVFLNPQLLKLLIGFVKSSNSYVWFGYICAILMFAVTLIQSFCLQSYFQHCF 382
Query: 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPF 404
L + +R+++M+ IY+K L + R +++ GE MSVD+ + ++ N WS
Sbjct: 383 VLGMCVRTTVMSSIYKKALTLSNLARKQYTIGETVNLMSVDSQKLMDATNYMQLVWSSVI 442
Query: 405 QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEIL 464
QI ++++ L+ ++ + ++G+ + +LLIPVN +A I N + MK KD+R++ EIL
Sbjct: 443 QITLSIFFLWRELGPSILAGVGVMVLLIPVNGVLATKIRNIQVQNMKNKDKRLKIMNEIL 502
Query: 465 THIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 524
+ I+ LK + WE F + R E+K+L L + +F TP L S+ TF ++
Sbjct: 503 SGIKILKYFAWEPSFQEQVQGIRKKELKNLLRFGQLQSLLIFILQITPILVSVVTFSVYV 562
Query: 525 LM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582
L+ + L+A FT + LFN L PL+ P V + ++ A +S+ RL R+LG + L
Sbjct: 563 LVDSANVLNAEKAFTSITLFNILRFPLSMLPMVTSSILQASVSVDRLERYLGGDD----L 618
Query: 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 642
+ +A +SNF D AV +A+ +W + + + V+L + G LVAV
Sbjct: 619 DTSA------IRRVSNF---DKAVKFSEASFTW----DPDLEATIQDVNLDIKPGQLVAV 665
Query: 643 IGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQS 702
+G VGSGKSSL++++LGEM HG I GS AYVPQ WI +GTI+DNILFG Y+ +
Sbjct: 666 VGTVGSGKSSLVSAMLGEMENVHGHITIQGSTAYVPQQSWIQNGTIKDNILFGSEYNEKK 725
Query: 703 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 762
Y + LKAC L D+ ++ GGDMA IGEKG+NLSGGQ+ R++LARA Y +DIY+LDD LS
Sbjct: 726 YQQVLKACALLPDLEILPGGDMAEIGEKGINLSGGQKQRVSLARAAYQDADIYILDDPLS 785
Query: 763 AVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
AVDA V + I N ++GP+ L KTRI TH + + D +VV+ KG + GS DL
Sbjct: 786 AVDAHVGKHIF-NKVVGPNGLLAGKTRIFVTHGIHFLPQVDEIVVLGKGTILEKGSYRDL 844
Query: 821 --AVSLYSGFWST---------------------------------NEFDTSLHMQKQE- 844
+++ W T E SL M+++
Sbjct: 845 LDKKGVFARNWKTFMKHSGPEGEATVNNDSEAEDDDDGLIPTMEEIPEDAASLAMRRENS 904
Query: 845 ------------------MRTNASSANKQILLQ-EKDVVSVSDDAQEIIEVEQRKEGRVE 885
++ + N +L + EK+V + Q++I+ E + G+V+
Sbjct: 905 LRRTLSRSSRSSSRRGKSLKNSLKIKNVNVLKEKEKEV-----EGQKLIKKEFVETGKVK 959
Query: 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTSFYLVV 944
++Y Y + GW+ L I L L + G++LWLS W D+ + T S+S +
Sbjct: 960 FSIYLKYLQAVGWWSILFIILFYGLNNVAFIGSNLWLSAWTSDSDNLNGTNNSSSHRDMR 1019
Query: 945 LCIFC---MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 1001
+ +F + L+ + A+ +H LLT I+ AP+ FFD TP GRI+NR
Sbjct: 1020 IGVFGALGLAQGICLLISTLWSIYACRNASKALHGQLLTNILRAPMRFFDTTPTGRIVNR 1079
Query: 1002 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061
FS D+ +DD LP L + F G+ G V++ F ++++P +Y +Q FY +
Sbjct: 1080 FSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICMATPVFAIIIIPLSILYISVQVFYVA 1139
Query: 1062 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121
TSR+LRRLDSV++SPIY+ F+ET+ G IRAF+ + F+A ++ + + Q+ +S +T+
Sbjct: 1140 TSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEKQIDINQKCVFSWITS 1199
Query: 1122 SLWLSLRLQ-------------------------VGLALSYAAPIVSLLGNFLSSFTETE 1156
+ WL++RL+ VG LS A I L + +E E
Sbjct: 1200 NRWLAIRLELVGNLVVFCSALLLVIYRKTLTGDVVGFVLSNALNITQTLNWLVRMTSEAE 1259
Query: 1157 KEMVSLERVLEYMDVPQEELCGYQSLSP-DWPFQGLIEFQNVTMRYKPSLPAALHDINFT 1215
+V++ER+ EY++V E P DWP G I+F N +RY+P L L I
Sbjct: 1260 TNIVAVERISEYINVENEAPWVTDKRPPADWPRHGEIQFNNYQVRYRPELDLVLKGITCN 1319
Query: 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1275
I+ G +VG+VGRTGAGKSS+ N LFR+ GGQI++DG+++ + + DLR R ++PQ
Sbjct: 1320 IKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDVASIGLHDLRERLTIIPQD 1379
Query: 1276 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISFSVGQRQ 1333
P LF GSLR NLDPF+ D ++W LE H++ V +GL + V E G + S+GQRQ
Sbjct: 1380 PILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGLQLGLLSEVTEGGDNLSIGQRQ 1439
Query: 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDE 1393
L+CL RA+L+ SK+L LDE TA VD +T S++Q I E TVITIAHR+ T+++ D+
Sbjct: 1440 LLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCTVITIAHRLHTIMDSDK 1499
Query: 1394 ILILDHGHLVEQGNPQTLLQDECSVF 1419
I++LD+G +VE G+P+ LL + S +
Sbjct: 1500 IMVLDNGKIVEYGSPEELLSNRGSFY 1525
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1221 (36%), Positives = 674/1221 (55%), Gaps = 117/1221 (9%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 344
LLK+VND F P LL LI F +L GY+ AI L ++++SF Y
Sbjct: 327 LLKLVNDIFTFVSPQLLKLLISFASDRDTYLWIGYLCAILLFTAALIQSFCLQCYFQLCF 386
Query: 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPF 404
KL +K+R++IM +Y+K L + R E++ GE MSVD + +++ N H WS
Sbjct: 387 KLGVKVRTAIMASVYKKALTLSNLARKEYTVGETVNLMSVDAQKLMDVTNFMHMLWSSVL 446
Query: 405 QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEIL 464
QI ++++ L+ ++ + ++G+ + +L+IP+N ++ K MK KD+R++ EIL
Sbjct: 447 QIVLSIFFLWRELGPSVLAGVGVMVLVIPINAILSTKSKTIQVKNMKNKDKRLKIMNEIL 506
Query: 465 THIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 524
+ I+ LK + WE F + R E+K+L L +F + TP L S+ TF ++
Sbjct: 507 SGIKILKYFAWEPSFRDQVQNLRKKELKNLLAFSQLQCVVIFVFQLTPVLVSVVTFSVYV 566
Query: 525 LMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLG-----CSE 577
L+ LDA FT + LFN L PL+ P +I+ ++ A +S RL ++LG S
Sbjct: 567 LVDSNNILDAQKAFTSITLFNILRFPLSMLPMMISSMLQASVSTERLEKYLGGDDLDTSA 626
Query: 578 YKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKG 637
+H+ NF D A+ +A+ +W E + + V+L + G
Sbjct: 627 IRHD---------------CNF---DKAMQFSEASFTW----EHDSEATVRDVNLDIMAG 664
Query: 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKN 697
LVAVIG VGSGKSSL++++LGEM HG I G+ AYVPQ WI +GTI+DNILFG
Sbjct: 665 QLVAVIGPVGSGKSSLISAMLGEMENVHGHITIKGTTAYVPQQSWIQNGTIKDNILFGTE 724
Query: 698 YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 757
++ + Y + L+AC L D+ ++ GGD+A IGEKG+NLSGGQ+ R++LARA Y DIY+L
Sbjct: 725 FNEKRYQQVLEACALLPDLEMLPGGDLAEIGEKGINLSGGQKQRISLARATYQNLDIYLL 784
Query: 758 DDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815
DD LSAVDA V + I N ++GP+ L KTR+L TH++ + D +VV+ G + G
Sbjct: 785 DDPLSAVDAHVGKHIF-NKVLGPNGLLKGKTRLLVTHSMHFLPQVDEIVVLGNGTIVEKG 843
Query: 816 S-SADLA---------------------VSLYSGFWSTNEFDTSLHMQKQEMRTNASS-- 851
S SA LA +++ G ++ D L +E+ +A+S
Sbjct: 844 SYSALLAKKGEFAKNLKTFLRHTGPEEEATVHDGSEEEDD-DYGLISSVEEIPEDAASIT 902
Query: 852 ----------------ANKQIL------LQEKDVVSVSDD-----AQEIIEVEQRKEGRV 884
+N + L L+ ++V S+ +D Q++I+ E + G+V
Sbjct: 903 MRRENSFRRTLSRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVKGQKLIKKEFIETGKV 962
Query: 885 ELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTS---F 940
+ ++Y Y + G F I L+ ++ + G++LWLS W D+ + T Y S
Sbjct: 963 KFSIYLEYLQAIGLFSIFFIILAFVMNSVAFIGSNLWLSAWTSDSKIFNSTDYPASQRDM 1022
Query: 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 1000
+ V + + F AFG + A+ +H LL I+ AP+ FFD TP GRI+N
Sbjct: 1023 RVGVYGALGLAQGIFVFIAHFWSAFGFVHASNILHKQLLNNILRAPMRFFDTTPTGRIVN 1082
Query: 1001 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYR 1060
RF+ D+ +DD+LP L + F+G++ V++ F ++++P IY +Q FY
Sbjct: 1083 RFAGDISTVDDTLPQSLRSWITCFLGIISTLVMICMATPVFTIIVIPLGIIYVSVQMFYV 1142
Query: 1061 STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1120
STSR+LRRLDSV+RSPIY+ F+ET++G IRAF+ + F+ + + Q+ +S +T
Sbjct: 1143 STSRQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRIDTNQKCVFSWIT 1202
Query: 1121 ASLWLSLRLQ-------------------------VGLALSYAAPIVSLLGNFLSSFTET 1155
++ WL++RL+ VG LS A I L + +E
Sbjct: 1203 SNRWLAIRLELVGNLTVFFSALMMVIYRDTLSGDTVGFVLSNALNITQTLNWLVRMTSEI 1262
Query: 1156 EKEMVSLERVLEYMDVPQE-ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINF 1214
E +V++ER+ EY V E + PDWP +G I+F N +RY+P L L I
Sbjct: 1263 ETNIVAVERITEYTKVENEAPWVTDKRPPPDWPSKGKIQFNNYQVRYRPELDLVLRGITC 1322
Query: 1215 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1274
I ++G+VGRTGAGKSS+ N LFR+ GGQI++DG++I + + DLR + ++PQ
Sbjct: 1323 DIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGQIIIDGVDIASIGLHDLREKLTIIPQ 1382
Query: 1275 SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISFSVGQR 1332
P LF GSLR NLDPF+ D +IW LE H+K V + +GL V E+G + S+GQR
Sbjct: 1383 DPILFSGSLRMNLDPFNNYSDEEIWKALELAHLKSFVASLQLGLSHEVTEAGGNLSIGQR 1442
Query: 1333 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMD 1392
QL+CL RALL+ SK+L LDE TA VD +T +++Q I +E TVITIAHR+ T+++ D
Sbjct: 1443 QLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIAHRLHTIMDSD 1502
Query: 1393 EILILDHGHLVEQGNPQTLLQ 1413
++++LD+G ++E G+P+ LLQ
Sbjct: 1503 KVMVLDNGKIIECGSPEELLQ 1523
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/1220 (35%), Positives = 666/1220 (54%), Gaps = 115/1220 (9%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 344
LLK+V D + F P LL LI F+ + + GY+ AI L ++++S Y FH+
Sbjct: 325 LLKLVYDLLTFLNPQLLKLLITFVSDPNSYAWLGYIFAILLFAVALIQSICLQTY-FHMC 383
Query: 345 -KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLP 403
L + + +++M +Y+K L + + +++ GE MSVD + +++ N H WS
Sbjct: 384 FNLGMCVGTTVMATVYKKALTISNLAKRQYTIGETVNLMSVDAQKLMDVTNFIHLVWSSV 443
Query: 404 FQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEI 463
QI +++Y L+ ++ + ++G+ + +LLIPVN +A N K MK KD+R+R EI
Sbjct: 444 LQIVLSIYFLWVELGPSVLAGVGVMVLLIPVNGILATKNRNIQFKNMKYKDKRLRIMNEI 503
Query: 464 LTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF 523
L+ ++ LK + WE F + R E+K+L T Y+ + +F TP L S+ TF ++
Sbjct: 504 LSGMKILKYFAWEPSFKDQVHNLRKKELKNLRTFAYMQSVVMFLLYLTPVLVSVTTFSVY 563
Query: 524 ALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581
L+ LDA FT + LFN L P++ P VI+ ++ A +S+ RL ++L +
Sbjct: 564 VLVDSNNILDAEKAFTSITLFNILRFPMSMLPNVISAMLQASVSVDRLEKYLSGDDLDTS 623
Query: 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVA 641
Q P++ D AV +A+ +W N E + V+L + G LVA
Sbjct: 624 AIQ--RDPNF-----------DKAVQFSEASFTWDRNLEP----TIRNVNLDIMPGQLVA 666
Query: 642 VIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQ 701
V+G VGSGKSSL++++LGEM HG I G+ AYVPQ WI +GTI+DNILFG +D +
Sbjct: 667 VVGTVGSGKSSLMSAMLGEMENVHGHITIKGTTAYVPQQSWIQNGTIKDNILFGAEFDER 726
Query: 702 SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 761
Y L+AC L D+ ++ GGD+A IGEKG+NLSGGQ+ R++LARA Y SDIY+LDD L
Sbjct: 727 RYQRVLEACALLPDLEILPGGDLAEIGEKGINLSGGQKQRISLARASYQNSDIYILDDPL 786
Query: 762 SAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQ--------- 810
SAVDA V + I N ++GP+ L KTR+L TH++ + D +VV++ G
Sbjct: 787 SAVDAHVGKHIF-NKVLGPNGLLNGKTRLLVTHSLHFLPQVDEIVVVENGTILEKGSYSS 845
Query: 811 ---------------VKWIGSSADLAVS------------LYSGFWSTNEFDTSLHMQKQ 843
VK S ++ V+ L S E SL ++++
Sbjct: 846 LLAKKGVFAKNLKMFVKHTDSEGEVTVNDGSEEDDDDDSGLISSIEEFPEDSISLTLKRE 905
Query: 844 ------------------EMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVE 885
+ N+ A +E++VV Q++I+ E + G+V+
Sbjct: 906 NSLHRTLSRSSRSSGRRLKSLKNSLKAQNGKTPKEEEVVK----GQKLIKKEFMETGKVK 961
Query: 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTS---FY 941
++Y Y + GW + I + +L + G++LWLS W D+ + T Y S
Sbjct: 962 FSIYLKYLQAIGWCSIVGIIFAYVLNSVAFIGSNLWLSAWTSDSNTYNGTNYPASQRDLR 1021
Query: 942 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 1001
+ + + + LV +F A G A+ +H LL I+ AP+ FF+ TP GRI+NR
Sbjct: 1022 IGIFGVLGLAQGLTVLVASFWSASGCAHASNILHKQLLNNILRAPMSFFNTTPIGRIVNR 1081
Query: 1002 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061
F+ D+ +DD+LP L + F+ ++ +++ F ++++P IY +Q FY +
Sbjct: 1082 FAGDISTVDDTLPQSLRSWMMCFLAIISTLIMICMATPVFAVIIIPLAIIYVAVQVFYVA 1141
Query: 1062 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121
TSR+LRRLDSV+RSPIY+ FTET++G IRAF+ + F+ + + + Q+ S +T+
Sbjct: 1142 TSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEHQQRFLKQNEIGIDTNQKCVSSWITS 1201
Query: 1122 SLWLSLRLQ-------------------------VGLALSYAAPIVSLLGNFLSSFTETE 1156
+ WL+ RL+ VG LS A I L + +ETE
Sbjct: 1202 NRWLAFRLELVGNLVVFSSALMMVIYRDTLSGDVVGFVLSNALNITQTLNWLVRMTSETE 1261
Query: 1157 KEMVSLERVLEYMDVPQEELCGYQSLSP-DWPFQGLIEFQNVTMRYKPSLPAALHDINFT 1215
+V++ER+ EY+ V E P WP +G I+F N +RY+P L L IN
Sbjct: 1262 TNIVAVERITEYIKVENEAPWVTDKRPPAGWPHKGEIQFSNYQVRYRPELDLVLKGINCD 1321
Query: 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1275
I+ ++G+VGRTGAGKSS+ N LFR+ GG I +DG++I + + DLRG+ ++PQ
Sbjct: 1322 IKSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGHITIDGIDIASIGLHDLRGKLTIIPQD 1381
Query: 1276 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQ 1333
P LF GSLR NLDPF+ D +IW LE H+K V + GL V E+ + S+GQRQ
Sbjct: 1382 PVLFSGSLRMNLDPFNNYSDEEIWRALELAHLKSFVAGLQHGLSREVSEAEDNLSIGQRQ 1441
Query: 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDE 1393
L+CL RALL+ SK+L LDE TA VD +T ++Q I +E TVITIAHR+ T+++ D+
Sbjct: 1442 LLCLGRALLRKSKILVLDEATAAVDLETDHLIQTTIRNEFSHCTVITIAHRLHTIMDSDK 1501
Query: 1394 ILILDHGHLVEQGNPQTLLQ 1413
I++LD+G++VE G+P+ LL+
Sbjct: 1502 IMVLDNGNIVEYGSPEELLE 1521
|
Mediates hepatobiliary excretion of numerous organic anions. Oryctolagus cuniculus (taxid: 9986) |
| >sp|B2RX12|MRP3_MOUSE Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/1232 (34%), Positives = 686/1232 (55%), Gaps = 104/1232 (8%)
Query: 266 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIA 324
PS +RA+ + + ++ + +GF P LL+ LI+F+ + G++LA
Sbjct: 295 QPSFLRALVRTFTSSLLMSACFNLIQNLLGFVNPQLLSILIRFISDPTAPTWWGFLLAGL 354
Query: 325 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 384
+ L+S +++ QY + + L+LR++I+ +IY+K L + + + E + GE+ MSV
Sbjct: 355 MFLSSTMQTLILHQYYHCIFVMALRLRTAIIGVIYRKALVITNSVKRESTVGEMVNLMSV 414
Query: 385 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
D R ++++ + WS P Q+ +A+Y L+ + + ++G+A+ +LLIP+N ++ +
Sbjct: 415 DAQRFMDVSPFINLLWSAPLQVILAIYFLWQILGPSALAGVAVIVLLIPLNGAVSMKMKT 474
Query: 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504
K MK KD RI+ EIL I+ LK+Y WE F + R SE++ L YL A
Sbjct: 475 YQVKQMKFKDSRIKLMSEILNGIKVLKLYAWEPSFLEQVKGIRQSELQLLRKGAYLQAIS 534
Query: 505 VFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDA 562
F W TP L +L T G++ + LDA F L+LFN L PLN P +I+GL A
Sbjct: 535 TFIWICTPFLVTLITLGVYVYVDESNVLDAEKAFVSLSLFNILKIPLNMLPQLISGLTQA 594
Query: 563 FISIRRLTRFLGCSEYKHE-LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 621
+S++R+ FL +E + +E+ SP Y A+ + + T +W +
Sbjct: 595 SVSLKRIQDFLNQNELDPQCVERKTISPGY-------------AITIHNGTFTW----AQ 637
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
+ L+ +++ +PKG+LVAV+G VG GKSSL++++LGEM G + GS+AYVPQ
Sbjct: 638 DLPPTLHSLNIQIPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGVVSVKGSVAYVPQQA 697
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + T+++N+LFG+ +P+ Y + L+ C L D+ ++ GGD IGEKG+NLSGGQR R
Sbjct: 698 WIQNCTLQENVLFGQPMNPKRYQQALETCALLADLDVLPGGDQTEIGEKGINLSGGQRQR 757
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILCTHNVQAISA 799
++LARAVY ++I++LDD LSAVD+ VA+ I + ++GP + KTR+L TH + +
Sbjct: 758 VSLARAVYSDANIFLLDDPLSAVDSHVAKHIF-DQVIGPEGVLAGKTRVLVTHGISFLPQ 816
Query: 800 ADMVVVMDKGQVKWIG--------------------------------SSADLAVSLYSG 827
D ++V+ GQV +G +A+ V L
Sbjct: 817 TDFIIVLAGGQVSEMGHYSALLQHDGSFANFLRNYAPDEDQEDHEAALQNANEEVLLLED 876
Query: 828 FWSTNEFDTS-----LHMQKQEMRTNASSANKQIL------------LQEKDVVSVSDDA 870
ST+ T ++KQ MR +S +++ + L+++ +V+ + +
Sbjct: 877 TLSTHTDLTDNEPAIYEVRKQFMREMSSLSSEGEVQNRTMPKKHTNSLEKEALVTKTKET 936
Query: 871 QEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG 930
+I+ E + G V+L+VY +YAK G TL ICL A+ G ++WLS W +
Sbjct: 937 GALIKEEIAETGNVKLSVYWDYAKSMGLCTTLSICLLYGGQSAAAIGANVWLSAWSNDAE 996
Query: 931 SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFF 990
+ TS L V + L ++ AF+ G+++AA +H LL + +P FF
Sbjct: 997 EHGQQNKTSVRLGVYAALGILQGLLVMLSAFTMVVGAIQAARLLHEALLHNKIRSPQSFF 1056
Query: 991 DQTPGGRILNRFSSDLYMIDDSL-PFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1049
D TP GRILNRFS D+Y+ID+ L P IL +L + F + I V+++ +F +++L P
Sbjct: 1057 DTTPSGRILNRFSKDIYVIDEVLAPTILMLLNSFFTSISTIMVIVASTPLFMVVVL-PLA 1115
Query: 1050 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVV 1109
+Y +Q FY +TSR+L+RL+S+SRSPI++ F+ET+ G+S IRA+ F V
Sbjct: 1116 VLYGFVQRFYVATSRQLKRLESISRSPIFSHFSETVTGTSVIRAYGRIQDFKVLSDTKVD 1175
Query: 1110 LYQRTSYSELTASLWLSLRLQ-------------------------VGLALSYAAPIVSL 1144
Q++SY + ++ WL + ++ VGL++SYA +
Sbjct: 1176 NNQKSSYPYIASNRWLGVHVEFVGNCVVLFAALFAVIGRNSLNPGLVGLSVSYALQVTMA 1235
Query: 1145 LGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS-LSPD-WPFQGLIEFQNVTMRYK 1202
L + ++ E ++++ERV EY E +S +P+ WP +G++EF+N ++RY+
Sbjct: 1236 LNWMIRMISDLESNIIAVERVKEYSKTKTEAPWVVESNRAPEGWPTRGMVEFRNYSVRYR 1295
Query: 1203 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1262
P L L ++ ++GG +VGIVGRTGAGKSS+ LFR+ G+I++DGLN+ + +
Sbjct: 1296 PGLELVLKNVTVHVQGGEKVGIVGRTGAGKSSMTLCLFRILEAAEGEIVIDGLNVAHIGL 1355
Query: 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFV 1320
DLR + ++PQ P LF G+LR NLDPF + IW LE H+ V + GL+
Sbjct: 1356 HDLRSQLTIIPQDPILFSGTLRMNLDPFGRYSEEDIWRALELSHLNTFVSSQPAGLDFQC 1415
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1380
E G + SVGQRQL+CLARALL+ S+VL LDE TA +D +T ++Q I ++ + TV+T
Sbjct: 1416 AEGGDNLSVGQRQLVCLARALLRKSRVLVLDEATAAIDLETDDLIQGTIRTQFEDCTVLT 1475
Query: 1381 IAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1412
IAHR++T+++ + +L+LD G + E +P L+
Sbjct: 1476 IAHRLNTIMDYNRVLVLDKGVVAEFDSPVNLI 1507
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Mus musculus (taxid: 10090) |
| >sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/1227 (34%), Positives = 671/1227 (54%), Gaps = 89/1227 (7%)
Query: 266 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAI 323
PSL + + +G PY + L K ++D + FAGP +L +I F+ + + GY
Sbjct: 311 EPSLFKVLYKTFG-PYFLMSFLYKALHDLMMFAGPKILELIINFVNDREAPDWQGYFYTA 369
Query: 324 ALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFM 382
L +++ L++ QY FH+ + ++++++++ +Y+K L + A R + GEI M
Sbjct: 370 LLFVSACLQTLALHQY-FHICFVSGMRIKTAVVGAVYRKALLITNAARKSSTVGEIVNLM 428
Query: 383 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 442
SVD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ IL++P+N +A
Sbjct: 429 SVDAQRFMDLATYINMIWSAPLQVILALYFLWLSLGPSVLAGVAVMILMVPLNAVMAMKT 488
Query: 443 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 502
MK KD RI+ EIL I+ LK+Y WE F +M R E+K L YL A
Sbjct: 489 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMSIRQEELKVLKKSAYLAA 548
Query: 503 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 560
F W TP L +L TF +F + + LDA F LALFN L PLN P VI+ ++
Sbjct: 549 VGTFTWVCTPFLVALSTFAVFVTVDERNILDAKKAFVSLALFNILRFPLNILPMVISSIV 608
Query: 561 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 620
A +S++RL FL ELE + I +G N ++ +++AT +W
Sbjct: 609 QASVSLKRLRIFLS----HEELEPDSIERRSIKSGEGN------SITVKNATFTW----A 654
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680
+ LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 655 RGEPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQ 714
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740
WI + ++R+NILFG Y ++AC L D+ ++ GD IGEKGVNLSGGQ+
Sbjct: 715 AWIQNDSLRENILFGHPLQENYYKAVMEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 774
Query: 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS 798
R++LARAVY SDIY+ DD LSAVDA V + I ++GP L KTRIL TH + +
Sbjct: 775 RVSLARAVYSNSDIYLFDDPLSAVDAHVGKHIFEK-VVGPMGLLKNKTRILVTHGISYLP 833
Query: 799 AADMVVVMDKGQVKWIGSSADL-----AVSLYSGFWSTNEFD------------------ 835
D+++VM G++ +GS +L A + + ++ E D
Sbjct: 834 QVDVIIVMSGGKISEMGSYQELLDRDGAFAEFLRTYANAEQDLASEDDSVSGSGKESKPV 893
Query: 836 ---------TSLHMQKQEMRTNASSAN---KQILLQEKDVVSVSDDAQEIIEVEQRKEGR 883
H+Q+ +++ S + + + E ++ +++E ++ + G+
Sbjct: 894 ENGMLVTDTVGKHLQRHLSNSSSHSGDTSQQHSSIAELQKAGAKEETWKLMEADKAQTGQ 953
Query: 884 VELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYL 942
V+L+VY NY K G FIT + + S ++ WLS W D + T+ + +F L
Sbjct: 954 VQLSVYWNYMKAIGLFITFLSIFLFLCNHVSALASNYWLSLWTDDPPVVNGTQANRNFRL 1013
Query: 943 VVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRF 1002
V + + + + G + A+ ++H LL ++ +P+ FF++TP G ++NRF
Sbjct: 1014 SVYGALGILQGAAIFGYSMAVSIGGIFASRRLHLDLLYNVLRSPMSFFERTPSGNLVNRF 1073
Query: 1003 SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062
S +L +D +P ++ + + + ++G +++ +++ P +Y +Q FY ++
Sbjct: 1074 SKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFYVAS 1133
Query: 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122
SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y + A+
Sbjct: 1134 SRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1193
Query: 1123 LWLSLRLQ-------------------------VGLALSYAAPIVSLLGNFLSSFTETEK 1157
WL++RL+ VGL++SY+ I + L + +E E
Sbjct: 1194 RWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQITAYLNWLVRMSSEMET 1253
Query: 1158 EMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLPAALHDINFT 1215
+V++ER+ EY + +E Q +P WP G +EF++ +RY+ L L IN T
Sbjct: 1254 NIVAVERLKEYSETEKEAPWQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLVLKHINVT 1313
Query: 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1275
IEGG +VGIVGRTGAGKSS+ LFR+ G+I++DG+NI + +LR + ++PQ
Sbjct: 1314 IEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGVNIAKIGLHNLRFKITIIPQD 1373
Query: 1276 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQ 1333
P LF GSLR NLDPF D ++W LE H+K V A+ L E G + SVGQRQ
Sbjct: 1374 PVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENLSVGQRQ 1433
Query: 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDE 1393
L+CLARALL+ +K+L LDE TA VD +T +++Q+ I ++ + TV+TIAHR++T+++
Sbjct: 1434 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTR 1493
Query: 1394 ILILDHGHLVEQGNPQTLLQDECSVFS 1420
+++LD G + E G P LLQ +S
Sbjct: 1494 VIVLDKGEVRECGAPSELLQQRGIFYS 1520
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Mus musculus (taxid: 10090) |
| >sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/1230 (34%), Positives = 678/1230 (55%), Gaps = 91/1230 (7%)
Query: 266 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAI 323
+PSL + + +G PY + L K ++D + FAGP +L +I F+ + + GY+
Sbjct: 311 DPSLFKVLYKTFG-PYFLMSFLYKALHDLMMFAGPEILELIINFVNDREAPDWQGYLYTA 369
Query: 324 ALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFM 382
L +++ L++ QY FH+ + ++++++++ +Y+K L + + R + GEI M
Sbjct: 370 LLFVSACLQTLALHQY-FHICFVTGMRIKTAVVGAVYRKALVITNSARKSSTVGEIVNLM 428
Query: 383 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 442
SVD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ IL++P N +A
Sbjct: 429 SVDAQRFMDLATYINMIWSAPLQVTLALYFLWLNLGPSVLAGVAVMILMVPFNAVMAMKT 488
Query: 443 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 502
MK KD RI+ EIL I+ LK+Y WE F +M R E+K L YL A
Sbjct: 489 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMNIRQEELKVLKKSAYLAA 548
Query: 503 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 560
F W TP L +L TF +F + + LDA F LALFN L PLN P VI+ ++
Sbjct: 549 VGTFTWVCTPFLVALSTFAVFVTVDEKNILDAKKAFVSLALFNILRFPLNILPMVISSIV 608
Query: 561 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 620
A +S++RL FL ELE + I +G NS + +++AT +W
Sbjct: 609 QASVSLKRLRIFLS----HEELEPDSIERWSIKDG-GGMNS----ITVKNATFTW----A 655
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680
++ LN ++ +P G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 656 RDEPPTLNGITFAIPDGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQ 715
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740
WI + ++R+NILFG+ Y ++AC L D+ ++ GD+ IGEKGVNLSGGQ+
Sbjct: 716 AWIQNDSLRENILFGRPLQEHCYKAVMEACALLPDLEILPSGDLTEIGEKGVNLSGGQKQ 775
Query: 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS 798
R++LARAVY SDIY+LDD LSAVDA V + I ++GP L KTRIL TH + +
Sbjct: 776 RVSLARAVYCNSDIYLLDDPLSAVDAHVGKHIFEK-VVGPMGLLKNKTRILVTHGISYLP 834
Query: 799 AADMVVVMDKGQVKWIGSSADL-----AVSLYSGFWSTNEFD----------------TS 837
D+++VM G++ +GS +L A + + ++ E D S
Sbjct: 835 QVDVIIVMSGGKISEMGSYQELLDRDGAFAEFVRTYANTEQDLASEDDSKNGVSGLGKES 894
Query: 838 LHMQKQEMRTNA-----------SSANKQILLQEKDVVS------VSDDAQEIIEVEQRK 880
++ + T+A SS++ + Q+ + V ++ +++E ++ +
Sbjct: 895 KPVENGILVTDAVGKPLQRHLSNSSSHSVVTNQQHSSTAELQKSGVKEETWKLMEADKAQ 954
Query: 881 EGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTS 939
G+V+L+VY NY K G I+ + + S ++ WLS W D + + T+ + +
Sbjct: 955 TGQVKLSVYWNYMKAIGLCISFLSIFLFLCNHVSALASNYWLSLWTDDRPAVNGTQENRN 1014
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
F L V + + + + G + A+ ++H LL ++ +P+ FF++TP G ++
Sbjct: 1015 FRLSVYGALGILQGVAVFGYSMAVSIGGIFASRRLHLDLLQNVLRSPMSFFERTPSGNLV 1074
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1059
NRFS +L +D +P ++ + + + ++G +++ +++ P +Y +Q FY
Sbjct: 1075 NRFSKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFY 1134
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEL 1119
++SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y +
Sbjct: 1135 VASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSI 1194
Query: 1120 TASLWLSLRLQ-------------------------VGLALSYAAPIVSLLGNFLSSFTE 1154
A+ WL++RL+ VGL++SY+ I + L + +E
Sbjct: 1195 VANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQITAYLNWLVRMSSE 1254
Query: 1155 TEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLPAALHDI 1212
E +V++ER+ EY + +E Q +P WP G +EF++ +RY+ L L I
Sbjct: 1255 METNIVAVERLKEYSETEKEASWQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLVLKHI 1314
Query: 1213 NFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1272
N TIEGG +VGIVGRTGAGKSS+ LFR+ G+I++DG+NI + +LR + ++
Sbjct: 1315 NVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHNLRFKITII 1374
Query: 1273 PQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVG 1330
PQ P LF GSLR NLDPF D ++W LE H+K V A+ L E G + SVG
Sbjct: 1375 PQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENLSVG 1434
Query: 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1390
QRQL+CLARALL+ +K+L LDE TA VD +T ++Q+ I ++ + TV+TIAHR++T+++
Sbjct: 1435 QRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDSTVLTIAHRLNTIMD 1494
Query: 1391 MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
+++LD G + E G P LLQ +S
Sbjct: 1495 YTRVIVLDKGEIRECGAPSELLQQRGVFYS 1524
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Rattus norvegicus (taxid: 10116) |
| >sp|O15438|MRP3_HUMAN Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/1234 (34%), Positives = 669/1234 (54%), Gaps = 105/1234 (8%)
Query: 266 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIA 324
PS ++A+ +G ++ K++ D + F P LL+ LI+F+ + G+++A
Sbjct: 296 KPSFLKALLATFGSSFLISACFKLIQDLLSFINPQLLSILIRFISNPMAPSWWGFLVAGL 355
Query: 325 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 384
+ L S+++S Y ++ +K R+ IM +IY+K L + + + + GEI MSV
Sbjct: 356 MFLCSMMQSLILQHYYHYIFVTGVKFRTGIMGVIYRKALVITNSVKRASTVGEIVNLMSV 415
Query: 385 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
D R ++LA + WS P QI +A+Y L+ + + ++G+A +LLIP+N +A +
Sbjct: 416 DAQRFMDLAPFLNLLWSAPLQIILAIYFLWQNLGPSVLAGVAFMVLLIPLNGAVAVKMRA 475
Query: 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504
K MK KD RI+ EIL I+ LK+Y WE F + R E++ L T YL
Sbjct: 476 FQVKQMKLKDSRIKLMSEILNGIKVLKLYAWEPSFLKQVEGIRQGELQLLRTAAYLHTTT 535
Query: 505 VFFWATTPTLFSLFTFGLFALM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDA 562
F W +P L +L T ++ + + LDA F ++LFN L PLN P +I+ L A
Sbjct: 536 TFTWMCSPFLVTLITLWVYVYVDPNNVLDAEKAFVSVSLFNILRLPLNMLPQLISNLTQA 595
Query: 563 FISIRRLTRFLGCSEYKHE-LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 621
+S++R+ +FL E + +E+ SP Y A+ + T +W +
Sbjct: 596 SVSLKRIQQFLSQEELDPQSVERKTISPGY-------------AITIHSGTFTW----AQ 638
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
+ L+ + + +PKG+LVAV+G VG GKSSL++++LGEM G +H GS+AYVPQ
Sbjct: 639 DLPPTLHSLDIQVPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGKVHMKGSVAYVPQQA 698
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + T+++N+LFGK +P+ Y +TL+AC L D+ ++ GGD IGEKG+NLSGGQR R
Sbjct: 699 WIQNCTLQENVLFGKALNPKRYQQTLEACALLADLEMLPGGDQTEIGEKGINLSGGQRQR 758
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILCTHNVQAISA 799
++LARAVY +DI++LDD LSAVD+ VA+ I + I GP + KTR+L TH + +
Sbjct: 759 VSLARAVYSDADIFLLDDPLSAVDSHVAKHIFDHVI-GPEGVLAGKTRVLVTHGISFLPQ 817
Query: 800 ADMVVVMDKGQVKWIGS------------------SADLAVSLYSGFWS----------- 830
D ++V+ GQV +G + D W+
Sbjct: 818 TDFIIVLADGQVSEMGPYPALLQRNGSFANFLCNYAPDEDQGHLEDSWTALEGAEDKEAL 877
Query: 831 ------------TNEFDTSLHMQKQEMRT-NASSAN----------KQILLQEKDVVSVS 867
T+ + +QKQ MR +A S++ + + EK V+ +
Sbjct: 878 LIEDTLSNHTDLTDNDPVTYVVQKQFMRQLSALSSDGEGQGRPVPRRHLGPSEKVQVTEA 937
Query: 868 DDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVD 927
+ + E+ G VEL+V+ +YAK G TL ICL + A+ G ++WLS W +
Sbjct: 938 KADGALTQEEKAAIGTVELSVFWDYAKAVGLCTTLAICLLYVGQSAAAIGANVWLSAWTN 997
Query: 928 TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987
+ + +TS L V + FL ++ A + A G ++AA +H LL + +P
Sbjct: 998 DAMADSRQNNTSLRLGVYAALGILQGFLVMLAAMAMAAGGIQAARVLHQALLHNKIRSPQ 1057
Query: 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047
FFD TP GRILN FS D+Y++D+ L ++ +LL +F + VV+ F ++++P
Sbjct: 1058 SFFDTTPSGRILNCFSKDIYVVDEVLAPVILMLLNSFFNAISTLVVIMASTPLFTVVILP 1117
Query: 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1107
+Y+ +Q FY +TSR+L+RL+SVSRSPIY+ F+ET+ G+S IRA+ F
Sbjct: 1118 LAVLYTLVQRFYAATSRQLKRLESVSRSPIYSHFSETVTGASVIRAYNRSRDFEIISDTK 1177
Query: 1108 VVLYQRTSYSELTASLWLSLRLQ-------------------------VGLALSYAAPIV 1142
V QR+ Y + ++ WLS+ ++ VGL++SY+ +
Sbjct: 1178 VDANQRSCYPYIISNRWLSIGVEFVGNCVVLFAALFAVIGRSSLNPGLVGLSVSYSLQVT 1237
Query: 1143 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMR 1200
L + ++ E +V++ERV EY E + P WP +G +EF+N ++R
Sbjct: 1238 FALNWMIRMMSDLESNIVAVERVKEYSKTETEAPWVVEGSRPPEGWPPRGEVEFRNYSVR 1297
Query: 1201 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1260
Y+P L L D++ + GG +VGIVGRTGAGKSS+ LFR+ G+I +DGLN+ +
Sbjct: 1298 YRPGLDLVLRDLSLHVHGGEKVGIVGRTGAGKSSMTLCLFRILEAAKGEIRIDGLNVADI 1357
Query: 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLET 1318
+ DLR + ++PQ P LF G+LR NLDPF + IW LE H+ V + GL+
Sbjct: 1358 GLHDLRSQLTIIPQDPILFSGTLRMNLDPFGSYSEEDIWWALELSHLHTFVSSQPAGLDF 1417
Query: 1319 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTV 1378
E G + SVGQRQL+CLARALL+ S++L LDE TA +D +T +++Q I ++ TV
Sbjct: 1418 QCSEGGENLSVGQRQLVCLARALLRKSRILVLDEATAAIDLETDNLIQATIRTQFDTCTV 1477
Query: 1379 ITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1412
+TIAHR++T+++ +L+LD G + E +P L+
Sbjct: 1478 LTIAHRLNTIMDYTRVLVLDKGVVAEFDSPANLI 1511
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1428 | ||||||
| 255543321 | 1395 | multidrug resistance-associated protein, | 0.893 | 0.914 | 0.745 | 0.0 | |
| 356547472 | 1384 | PREDICTED: ABC transporter C family memb | 0.943 | 0.973 | 0.687 | 0.0 | |
| 225443168 | 1305 | PREDICTED: ABC transporter C family memb | 0.869 | 0.951 | 0.750 | 0.0 | |
| 156556172 | 1457 | Multidrug Resistance associated Protein | 0.993 | 0.973 | 0.658 | 0.0 | |
| 334184186 | 1404 | multidrug resistance-associated protein | 0.946 | 0.962 | 0.639 | 0.0 | |
| 298286923 | 1410 | RecName: Full=ABC transporter C family m | 0.949 | 0.961 | 0.639 | 0.0 | |
| 297831764 | 1193 | ATMRP11 [Arabidopsis lyrata subsp. lyrat | 0.812 | 0.972 | 0.686 | 0.0 | |
| 298204674 | 1205 | unnamed protein product [Vitis vinifera] | 0.730 | 0.865 | 0.723 | 0.0 | |
| 5001458 | 1146 | putative ABC transporter [Arabidopsis th | 0.745 | 0.929 | 0.692 | 0.0 | |
| 358346459 | 1539 | ABC transporter C family member [Medicag | 0.789 | 0.732 | 0.657 | 0.0 |
| >gi|255543321|ref|XP_002512723.1| multidrug resistance-associated protein, putative [Ricinus communis] gi|223547734|gb|EEF49226.1| multidrug resistance-associated protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1979 bits (5126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 978/1312 (74%), Positives = 1114/1312 (84%), Gaps = 36/1312 (2%)
Query: 149 EVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQ 208
+VL+CLKE ++LLD++F ISINIIR++ AS + SSIE+ LLS D D+E+ DSGN Q
Sbjct: 88 QVLECLKESSVILLDVLFSISINIIRIRAASPKNSSIEDPLLSADIDIEQAYPVDSGNIQ 147
Query: 209 SYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPS 268
S W+LM FKSI VM RG+IKQLDFEDLLGLP DM+P +CH +L CWQAQ++ +NP
Sbjct: 148 SCWNLMTFKSITPVMKRGIIKQLDFEDLLGLPDDMEPLSCHDRLSCCWQAQQTS--SNPL 205
Query: 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLT 328
L++AICCAYG+PY +GLLKV ND IGFAGPLLLNKLI+FLQ+GS H DGY+LA++LGLT
Sbjct: 206 LLKAICCAYGWPYFRIGLLKVFNDCIGFAGPLLLNKLIRFLQRGSAHWDGYLLALSLGLT 265
Query: 329 SILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDR 388
S+LKSF DTQYSFHL+KLKLKLR+SIMT+IYQKCL V LAERS+FS+GEIQTFMSVD DR
Sbjct: 266 SVLKSFLDTQYSFHLAKLKLKLRASIMTVIYQKCLCVTLAERSKFSEGEIQTFMSVDADR 325
Query: 389 TVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEK 448
TVNL NSFHD WSLP QIGVALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEK
Sbjct: 326 TVNLCNSFHDVWSLPLQIGVALYLLYTQVKFAFLSGLAITILLIPVNKWISELIASATEK 385
Query: 449 MMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508
MMKQKDERIR+TGEILT+IRTLKMYGWE +FSS LM+TRS+EVKHL+TRKYLDAWCVFFW
Sbjct: 386 MMKQKDERIRKTGEILTYIRTLKMYGWEHLFSSRLMETRSTEVKHLATRKYLDAWCVFFW 445
Query: 509 ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRR 568
ATTPTLFSLFTFGLF LMGHQL+AA VFTCLALFN+LISPLNSFPWVINGLIDAFIS RR
Sbjct: 446 ATTPTLFSLFTFGLFTLMGHQLEAATVFTCLALFNNLISPLNSFPWVINGLIDAFISTRR 505
Query: 569 LTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 628
L++FLGC E KH+LEQ S S N SNF S DMAV+M D C+W +E++QN+VLN
Sbjct: 506 LSKFLGCPENKHKLEQRTESLS--PNYQSNFVSDDMAVMMHDVCCAWSSGDEQQQNLVLN 563
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTI 688
V++ LPKGS +A++GEVGSGKSSLL +ILGEM GS+H+SGS AYVPQVPWILSGT+
Sbjct: 564 NVTVTLPKGSFIAIVGEVGSGKSSLLGAILGEMRFIRGSVHSSGSRAYVPQVPWILSGTV 623
Query: 689 RDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748
R+NILFGKNYD + Y +T+KAC LDVDIS+M GGDMAYIGEKGVNLSGGQRAR+ALARA+
Sbjct: 624 RENILFGKNYDSERYLDTIKACALDVDISMMAGGDMAYIGEKGVNLSGGQRARIALARAI 683
Query: 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808
Y GSD+YMLDDVLSAVDA+VAR IL NAI+GP + QKTR+LCTHNVQAIS+AD +VVM++
Sbjct: 684 YQGSDVYMLDDVLSAVDAEVARCILQNAILGPLLDQKTRVLCTHNVQAISSADRIVVMER 743
Query: 809 GQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSD 868
G VKW+G+S DLAVS YS F NEFDT ++Q Q +R N S+ + + +K+ + VS+
Sbjct: 744 GHVKWVGNSTDLAVSSYSAFSLQNEFDTLSYVQGQGLRINTSTESIKSPSVDKESICVSE 803
Query: 869 DAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT 928
+AQEI EVE RK GRVEL VYKNY FSG FI +VI LSAILMQASRNGNDLWLSYWVDT
Sbjct: 804 EAQEIFEVELRKAGRVELAVYKNYVAFSGCFIIVVIGLSAILMQASRNGNDLWLSYWVDT 863
Query: 929 TGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 988
TGSS +STSFYL VLCIFC+ NS LTLVRAFSFAFG LRAA++VHNTLL K+++AP+
Sbjct: 864 TGSSHGGFSTSFYLAVLCIFCIVNSSLTLVRAFSFAFGGLRAAIQVHNTLLKKLIDAPIQ 923
Query: 989 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1048
FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGIA++LSYVQV FLLLL+PF
Sbjct: 924 FFDQTPAGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAIILSYVQVAFLLLLLPF 983
Query: 1049 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1108
WFIYSKLQFFYRSTSRELRRLDSVSRSPIYA+FTETL+G+STIRAFKSED F+AKF EHV
Sbjct: 984 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYATFTETLDGTSTIRAFKSEDCFLAKFTEHV 1043
Query: 1109 VLYQRTSYSELTASLWLSLRLQ-------------------------------VGLALSY 1137
LYQRTSYSE ASLWLSLRLQ VGLALSY
Sbjct: 1044 GLYQRTSYSETIASLWLSLRLQLIAAFIISFVAVMAVVGSRGYLPISSGTPGLVGLALSY 1103
Query: 1138 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1197
AAPIVSLLG+FL+SFTETEKEMVS+ER L+YMD+ QEEL G QSL PDWPFQGLIEFQNV
Sbjct: 1104 AAPIVSLLGSFLTSFTETEKEMVSVERALQYMDISQEELEGSQSLGPDWPFQGLIEFQNV 1163
Query: 1198 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1257
TMRYKPSLP AL + FT+ GGTQVGIVGRTGAGKSSILNALFRL+PI GG ILVDGLNI
Sbjct: 1164 TMRYKPSLPPALDGVTFTVAGGTQVGIVGRTGAGKSSILNALFRLSPISGGCILVDGLNI 1223
Query: 1258 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGL 1316
I+ PVRDLR F+VVPQ+PFLFEGSLRDNLDP + DLKIWS LE+CH+KEEVE A GL
Sbjct: 1224 IDVPVRDLRAHFSVVPQTPFLFEGSLRDNLDPLQTSSDLKIWSTLEQCHIKEEVEMAGGL 1283
Query: 1317 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1376
+ VK SG SFSVGQRQL+CLARALLKSS+VLCLDECTANVD QTASILQNAIS+EC+GM
Sbjct: 1284 DALVKGSGSSFSVGQRQLLCLARALLKSSRVLCLDECTANVDTQTASILQNAISTECEGM 1343
Query: 1377 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1428
TVITIAHRISTV+NMD IL+LD G+++EQGNPQ LL+D + FSSF +ASTM
Sbjct: 1344 TVITIAHRISTVMNMDHILVLDRGNVIEQGNPQALLRDGFTRFSSFAKASTM 1395
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547472|ref|XP_003542136.1| PREDICTED: ABC transporter C family member 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1966 bits (5093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 982/1429 (68%), Positives = 1148/1429 (80%), Gaps = 82/1429 (5%)
Query: 37 IILIIGITQRSPR----QNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSY 92
+I+++G Q+ R + ++ L EK L+++P VGACLS VD+I L K+ + FV Y
Sbjct: 1 MIVVLGFNQKIGRGFRLSDSQMTLPEKFVLNLIPAVGACLSIVDLIFLWKKDHNSHFVGY 60
Query: 93 HEWLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLK 152
H+W +SCSE +W +
Sbjct: 61 HKWFNSCSELILWVSV-------------------------------------------- 76
Query: 153 CLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWD 212
C+ E +VLL+I F I+IN+IR+K S + S +E+ LLS D+EE D GNN ++WD
Sbjct: 77 CIMESLVVLLNISFSIAINVIRIKIPSFKSSLLEDPLLSNGVDLEEGGYNDLGNNGNFWD 136
Query: 213 LMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRA 272
LM FK I VMN GVIKQLD EDLL LPTD+ PS+CH +LSCWQAQ S N +NPSL RA
Sbjct: 137 LMTFKFITPVMNHGVIKQLDPEDLLPLPTDIGPSSCHDVILSCWQAQLSNNDSNPSLFRA 196
Query: 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILK 332
+C AYG+PY+CLGLLKV+ND IGFAGPLLLNKLI+FLQQGS +LDGY+LA++LGLTSI+K
Sbjct: 197 LCSAYGWPYLCLGLLKVINDCIGFAGPLLLNKLIQFLQQGSVNLDGYLLALSLGLTSIIK 256
Query: 333 SFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNL 392
SF DTQY+FHLSKLKLKLRSSIMT+IY+KCL V LAERS+F++GEIQTFMSVD DRTVNL
Sbjct: 257 SFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNL 316
Query: 393 ANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ 452
NSFHD WSLP QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWI+ LIA ATE+MMK+
Sbjct: 317 CNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISQLIARATEQMMKE 376
Query: 453 KDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 512
KDERIRRTGE+LT+IRTLKMYGWE +FSSWLM TRS EVKHL+TRKYLDAWCVFFWATTP
Sbjct: 377 KDERIRRTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTP 436
Query: 513 TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRF 572
TLFSLFTFGLFALMGH+LDAAMVFTCLALFN+LISPLNSFPWVINGLIDA IS RRL+RF
Sbjct: 437 TLFSLFTFGLFALMGHELDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRF 496
Query: 573 LGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSL 632
L C E K ++ +SPS + + + + + V +QDA C+W + E+ N+VLN V+L
Sbjct: 497 LSCPERKFKVGDTNSSPSSFLSKQPD-SVQGLGVFIQDACCTWSSSEEQALNLVLNHVTL 555
Query: 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNI 692
+ +GS VAVIGEVGSGKSSLL SILGEM L GS++++ SIAYVPQVPWILSGT+RDNI
Sbjct: 556 SVSQGSFVAVIGEVGSGKSSLLYSILGEMQLARGSVYSNESIAYVPQVPWILSGTVRDNI 615
Query: 693 LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752
LFGK+YDP+ Y++TL+AC LDVD+S+MV GDMAYIGEKGVNLSGGQRARLALARA+YH S
Sbjct: 616 LFGKSYDPERYTDTLQACALDVDVSMMVRGDMAYIGEKGVNLSGGQRARLALARAMYHDS 675
Query: 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
D+ MLDDVLSAVD QVA+ IL NAI+GP M +KTR+LCTHN+QAIS+ADM+VVMDKG++K
Sbjct: 676 DVVMLDDVLSAVDVQVAQRILHNAILGPLMQRKTRLLCTHNIQAISSADMIVVMDKGRIK 735
Query: 813 WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQE 872
W+G+SAD +S Y+ F NE D++LH +Q TN SS +K+ L D+V V + A+E
Sbjct: 736 WMGNSADFPISSYTEFSPLNEIDSALHNHRQSCSTNLSSKSKEQSLPNSDIVHVLEGAEE 795
Query: 873 IIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG-S 931
I+EVE RKEG+VEL VYK+YA F+GWF+T++ICLSAILMQASRNGNDLWLS+WVDTT S
Sbjct: 796 IVEVELRKEGKVELGVYKSYAVFTGWFMTVIICLSAILMQASRNGNDLWLSFWVDTTTES 855
Query: 932 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 991
SQT+YS SFYL +LC+FC+ NS TLVRAFSFAFG L+AA KVHN LL K+VNAPV FFD
Sbjct: 856 SQTRYSVSFYLAILCLFCIMNSLFTLVRAFSFAFGGLQAATKVHNKLLNKLVNAPVQFFD 915
Query: 992 QTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1051
QTPGGRILNR SSDLY IDDSLPFI+NILLANFVGLLGI ++L YVQVFFLLLL+PFW+I
Sbjct: 916 QTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGITIILCYVQVFFLLLLLPFWYI 975
Query: 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1111
YS+LQFFYRSTSRELRRLDSVSRSPIY SFTETL+GSSTIRAFK+ED+F AKF EH+ LY
Sbjct: 976 YSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKAEDFFFAKFIEHITLY 1035
Query: 1112 QRTSYSELTASLWL-------------------------SLRLQ------VGLALSYAAP 1140
Q+TSY+E+ ASLWL SL + VGLALSYAAP
Sbjct: 1036 QKTSYTEIVASLWLSLRLQLLGAFIVSFIAVMAVVGSHGSLPINFGTPGLVGLALSYAAP 1095
Query: 1141 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMR 1200
IVSLLG+FLSSFTETEKEMVS+ER L+YMD+PQEE G LSPDWP QG+IEFQ+VT++
Sbjct: 1096 IVSLLGSFLSSFTETEKEMVSVERALQYMDIPQEEQTGCLYLSPDWPNQGVIEFQSVTLK 1155
Query: 1201 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1260
Y PSLPAAL +++F I GGTQVGI+GRTGAGKSS+LNALFRLTPIC G I +DG++I N
Sbjct: 1156 YMPSLPAALCNLSFRIVGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSITIDGVDIKNI 1215
Query: 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF 1319
PVR+LR A+VPQSPFLFEGSLRDNLDP MNDDLKIW+VLEKCHVKEEVEA GL+
Sbjct: 1216 PVRELRTHLAIVPQSPFLFEGSLRDNLDPLKMNDDLKIWNVLEKCHVKEEVEAAGGLDVL 1275
Query: 1320 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1379
VKE+G+SFSVGQRQL+CLARALLKSSKVLCLDECTANVD QTAS+LQN ISSECKGMTVI
Sbjct: 1276 VKEAGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQNTISSECKGMTVI 1335
Query: 1380 TIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1428
TIAHRISTV+NMD ILILDHG L EQGNPQ LL+D S+FSSFVRAS M
Sbjct: 1336 TIAHRISTVINMDSILILDHGKLAEQGNPQILLKDGTSIFSSFVRASAM 1384
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443168|ref|XP_002264313.1| PREDICTED: ABC transporter C family member 13-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1932 bits (5004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 964/1284 (75%), Positives = 1078/1284 (83%), Gaps = 42/1284 (3%)
Query: 186 EESLLSVDGDVEEDCNTDS------GNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGL 239
+E L S ++E + N D+ G QSYW L+ FK+I SVMN GV+KQLDFEDLL L
Sbjct: 23 KELLFSKTYNLEVEANMDTLTGQLKGKTQSYWHLLTFKAITSVMNHGVVKQLDFEDLLQL 82
Query: 240 PTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 299
P DMDPS+CH+ LLSCW AQ+ NC+NPSL RAICCAYG+PY LGLLKVVND IGF GP
Sbjct: 83 PIDMDPSSCHATLLSCWHAQQRHNCSNPSLFRAICCAYGWPYFRLGLLKVVNDCIGFVGP 142
Query: 300 LLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 359
+LLN LI+FLQQGSG+LDGY+LA+A+GL I KSF DTQY+FHLSKLKLKLRSSIMT+IY
Sbjct: 143 VLLNNLIRFLQQGSGNLDGYILAVAMGLIPIFKSFLDTQYTFHLSKLKLKLRSSIMTVIY 202
Query: 360 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKF 419
KCL V LAERS+FS+GEIQTFMSVD DR VNL NSFHD WSLP QIG+ALYLLYTQVKF
Sbjct: 203 HKCLCVNLAERSKFSEGEIQTFMSVDADRIVNLCNSFHDMWSLPLQIGLALYLLYTQVKF 262
Query: 420 AFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIF 479
AFVSG+AITILLIPVNKWI+ IA ATEKMMK+KDERI +T EIL +IRTLKMYGWE +F
Sbjct: 263 AFVSGIAITILLIPVNKWISKFIARATEKMMKKKDERISKTAEILAYIRTLKMYGWELLF 322
Query: 480 SSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCL 539
SWLM+ RSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF LMG+QLDAAMVFTCL
Sbjct: 323 MSWLMEIRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGYQLDAAMVFTCL 382
Query: 540 ALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK-HELEQAANSPSYISNGLS- 597
ALFN+LISPLNSFPWVINGLIDA IS RRL+RFL CSE+K ELEQ A SPS S
Sbjct: 383 ALFNTLISPLNSFPWVINGLIDAIISTRRLSRFLSCSEHKPAELEQTAGSPSSPSFSGQF 442
Query: 598 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI 657
NF +DMAV M DA+C+W + E E+++VL+ V+L LP+GSLVA+IGEVGSGKSSLLNSI
Sbjct: 443 NFKLEDMAVAMYDASCAWSSSEEVEKDLVLHHVTLGLPRGSLVAIIGEVGSGKSSLLNSI 502
Query: 658 LGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717
L EM L HGSI++ GSI YVPQVPWILSGTIR+NILFGK YDP YS+ L+AC LD+DIS
Sbjct: 503 LKEMRLIHGSIYSDGSITYVPQVPWILSGTIRENILFGKAYDPTRYSDVLEACALDIDIS 562
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
LMVGGDMAYIG+KGVNLSGGQRARLALARA+YHGSDI+MLDDVLSAVD QVAR IL NAI
Sbjct: 563 LMVGGDMAYIGDKGVNLSGGQRARLALARAIYHGSDIFMLDDVLSAVDTQVARCILHNAI 622
Query: 778 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 837
+GP M Q TR+LCTHN+QA+S+ADM+VVMDKG VKW+GSS D +VS YS F S NEF S
Sbjct: 623 LGPLMNQHTRVLCTHNIQAMSSADMIVVMDKGHVKWVGSSTDFSVSSYSTFCSLNEFTVS 682
Query: 838 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897
++ E TN S+ KQ E+D + V +AQEIIEVE RKEGRVELTVYK+YA +SG
Sbjct: 683 -QVRSLECSTNTSTETKQDCKPERDSICVPGEAQEIIEVELRKEGRVELTVYKSYATYSG 741
Query: 898 WFITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFYLVVLCIFCMFNSFLT 956
WFIT+VICLSAILMQASRNGNDLWLSYWVD TTGSS T+YSTSFYLVVLCIFC+ NSFLT
Sbjct: 742 WFITVVICLSAILMQASRNGNDLWLSYWVDTTTGSSHTEYSTSFYLVVLCIFCVINSFLT 801
Query: 957 LVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1016
LVRAFSFAFG LRAAV+VHNTLL+K++NAPV FFD+TPGGRILNR SSDLY IDDSLPFI
Sbjct: 802 LVRAFSFAFGGLRAAVQVHNTLLSKLINAPVHFFDKTPGGRILNRMSSDLYTIDDSLPFI 861
Query: 1017 LNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSP 1076
LNILLAN VGLLGIA+VLSYVQV FLLLL+PFW++YSK+QF+YRSTSRELRRLDSVSRSP
Sbjct: 862 LNILLANIVGLLGIAIVLSYVQVVFLLLLLPFWYVYSKIQFYYRSTSRELRRLDSVSRSP 921
Query: 1077 IYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA--------------- 1121
I+ASFTETL+GSSTIRAFK ED F +F EHV LYQ+TSYSEL A
Sbjct: 922 IFASFTETLDGSSTIRAFKCEDLFFTRFSEHVALYQQTSYSELIASLWLSLRLQLLAALV 981
Query: 1122 --------------SLWLSLRLQ--VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERV 1165
SL +SL VGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERV
Sbjct: 982 ISFVAMMAVIGSRDSLPISLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERV 1041
Query: 1166 LEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIV 1225
L+YMD+PQEEL G QSLSP+WP +G I FQNV++RY PSLP ALHDI FTI GGTQVGI+
Sbjct: 1042 LQYMDIPQEELNGCQSLSPNWPSEGYIMFQNVSLRYLPSLPDALHDITFTISGGTQVGII 1101
Query: 1226 GRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1285
GRTGAGKSSILNALFRLTPIC G ILVDGL+I + PVRDLR FAVVPQSPFLFEGSLRD
Sbjct: 1102 GRTGAGKSSILNALFRLTPICKGCILVDGLDIADVPVRDLRSHFAVVPQSPFLFEGSLRD 1161
Query: 1286 NLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKS 1344
NLDPF ++DDLKIW LE+CHVKEEVE A GL+ VKESG SFSVGQRQL+CLARALLKS
Sbjct: 1162 NLDPFRVSDDLKIWKTLERCHVKEEVEVAGGLDIHVKESGTSFSVGQRQLLCLARALLKS 1221
Query: 1345 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVE 1404
SKVLCLDECTAN+DAQT+S+LQNAI +EC+GMTVITIAHRISTVL+MD ILILD G LVE
Sbjct: 1222 SKVLCLDECTANIDAQTSSVLQNAILTECRGMTVITIAHRISTVLSMDNILILDRGILVE 1281
Query: 1405 QGNPQTLLQDECSVFSSFVRASTM 1428
QGNPQ LLQD S FS F +ASTM
Sbjct: 1282 QGNPQVLLQDHSSRFSGFAKASTM 1305
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|156556172|emb|CAO94660.1| Multidrug Resistance associated Protein 1 [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 1910 bits (4949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 964/1463 (65%), Positives = 1162/1463 (79%), Gaps = 44/1463 (3%)
Query: 1 MDFICPNSPFVWDGSTFSKCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKV 60
+ ICP+SP+VW+G+ S+CF +++L F NM T+ +I+++G+T+RS R+++RI+L K+
Sbjct: 4 LKHICPDSPYVWNGNGVSRCFSNIVLGFGANMATLIVIVLVGVTRRSGRRSRRIHLSAKI 63
Query: 61 FLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHCL 120
L +P +GA +S ++++LL++ + G ++ E+L S F VW ++L+S C + +
Sbjct: 64 LLFTVPALGAFVSFFEIVVLLRKIVGGYPFAFQEYLFPGSLFGVWVTVLLVSICDYWFVI 123
Query: 121 FCHRILCFWWIIKPVMGILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASS 180
FC+R+LC WWIIKP + I H V F+S E+L CL E L LD FGI INII+ K AS
Sbjct: 124 FCNRLLCLWWIIKPFLWIPHLQVVFTSQELLPCLGESFLAFLDFTFGILINIIKSKWASH 183
Query: 181 RRS--SIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLG 238
R S SIEE LL D + C G + W ++ FKSIDSVM GV +QLDF DLL
Sbjct: 184 RSSCDSIEEPLLPCKVDAKGHCGI-LGLANNLWRIITFKSIDSVMENGVKRQLDFNDLLQ 242
Query: 239 LPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAG 298
LP DMD S C++ L CW+AQ+ N +NPSL++A+CCAYG+PY +GLLKV+ND + F G
Sbjct: 243 LPEDMDSSCCYNLLQHCWEAQQRNNNSNPSLLKAVCCAYGWPYFRIGLLKVINDCLSFVG 302
Query: 299 PLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII 358
P+LLNKLIKFLQQGS H DGY+ AI+LGL+S+LKSF DTQYSFHL+++KLKLRSSIMTI+
Sbjct: 303 PVLLNKLIKFLQQGSNHYDGYIFAISLGLSSVLKSFLDTQYSFHLARIKLKLRSSIMTIV 362
Query: 359 YQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVK 418
Y KCL VRLAERS+FS+GEIQTFMSVD DRTVNL NSFHD WSLP QIGVALYLLY QVK
Sbjct: 363 YCKCLSVRLAERSKFSEGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYVQVK 422
Query: 419 FAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQI 478
FAF+SG+AITILLIPVNKWIA LIA AT+ MM+QKDERIRRT E+LT+IRTLKMYGWE +
Sbjct: 423 FAFLSGIAITILLIPVNKWIAQLIAKATKSMMEQKDERIRRTAELLTYIRTLKMYGWELL 482
Query: 479 FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTC 538
F+SWLMKTRS EVKHLSTRKYLDAWCVFFWATTPTLFSL TFGL+ LMGHQLDAA VFTC
Sbjct: 483 FASWLMKTRSLEVKHLSTRKYLDAWCVFFWATTPTLFSLCTFGLYTLMGHQLDAATVFTC 542
Query: 539 LALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS-YISNGLS 597
LALFN+LISPLNSFPWVINGLIDAFIS RL+ +L C E+K LE+ N P+ SN L
Sbjct: 543 LALFNNLISPLNSFPWVINGLIDAFISSGRLSNYLSCCEHKVALEKTGNYPTPSCSNNLE 602
Query: 598 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI 657
N MAV + DA C+W ++++E +++L++++L +PKG LVAV+GEVGSGKS+LLN I
Sbjct: 603 N-----MAVTICDACCTWSSSDKKEFDLLLHKITLQVPKGCLVAVVGEVGSGKSALLNLI 657
Query: 658 LGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717
L E+ L GS+ +GS+ YVPQVPWILSGTIRDNILFG ++P+ YS+ LKAC LD DIS
Sbjct: 658 LEEVRLVSGSLSLTGSVTYVPQVPWILSGTIRDNILFGTEFNPRRYSDVLKACALDFDIS 717
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
LM+GGDMA IGEKG+NLSGGQRARLALARA+Y GS+IYMLDDVLSAVDA VA IL+NAI
Sbjct: 718 LMMGGDMACIGEKGLNLSGGQRARLALARAIYCGSEIYMLDDVLSAVDAHVASSILNNAI 777
Query: 778 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 837
+GP M Q+TRILCTHN+QAI AAD+VV MDKG+VKW+GS ++L VS Y S + + S
Sbjct: 778 LGPLMNQQTRILCTHNIQAIYAADVVVEMDKGRVKWVGSPSNLTVSSYLALPSIDNLNGS 837
Query: 838 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897
+ K+ +R+ +S + +QE+D +++ + QE IE E RKEG+VEL VYKNYA F+G
Sbjct: 838 SEVHKKVIRSAVASETIE-EVQEQDHLNLLEAVQETIEAETRKEGKVELIVYKNYAAFAG 896
Query: 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTL 957
WFIT+ C SAI MQASRNGNDLWLSYWVDTTGSSQ +ST+FYLV+LC+FC NS LTL
Sbjct: 897 WFITIATCFSAIFMQASRNGNDLWLSYWVDTTGSSQKNFSTTFYLVILCLFCFVNSSLTL 956
Query: 958 VRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFIL 1017
VRAFSFA+G LRAA VH+ +L +++NA V F+DQTP GRILNRFSSDLY IDDSLPFIL
Sbjct: 957 VRAFSFAYGGLRAAKVVHDQMLNRLINATVSFYDQTPTGRILNRFSSDLYTIDDSLPFIL 1016
Query: 1018 NILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPI 1077
NILLANFVGLLGIA+VLSYVQV FLLLL+PFW+IYSK+QF+YRSTSRELRRLDSVSRSPI
Sbjct: 1017 NILLANFVGLLGIAIVLSYVQVLFLLLLLPFWYIYSKIQFYYRSTSRELRRLDSVSRSPI 1076
Query: 1078 YASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLW------------- 1124
YASFTETL+G+STIRAFKSED+F+ +F +H+ LYQRTSYSE+TASLW
Sbjct: 1077 YASFTETLDGASTIRAFKSEDFFLFRFIQHITLYQRTSYSEVTASLWLSLRLQLLAAFIV 1136
Query: 1125 --------------LSLRLQ----VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVL 1166
L + L VGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERVL
Sbjct: 1137 SFVAVMAVIGAHKHLPINLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVL 1196
Query: 1167 EYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVG 1226
+YMD+PQEE+ + +WP G I+FQNVT+RY PSLPAALHD++FTI GGTQVG++G
Sbjct: 1197 QYMDIPQEEVG--MLIEHNWPSHGEIQFQNVTLRYMPSLPAALHDVSFTISGGTQVGVIG 1254
Query: 1227 RTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN 1286
RTGAGKSSILNALFRL I GG+ILVD ++I +R LR + AVVPQSPFLF+ SLR N
Sbjct: 1255 RTGAGKSSILNALFRLNSITGGRILVDDVDISIVSLRHLRSQLAVVPQSPFLFKASLRAN 1314
Query: 1287 LDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSS 1345
LDPF DD IW+VL+KCHVKEEVEA+ GL+ VKESG SFSVGQRQL+CLARALLKSS
Sbjct: 1315 LDPFKEKDDADIWNVLKKCHVKEEVEALGGLDIEVKESGTSFSVGQRQLLCLARALLKSS 1374
Query: 1346 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1405
KVLCLDECTAN+D QTAS LQNAI++EC+G TVITIAHRISTVLNMD ILILD G LVEQ
Sbjct: 1375 KVLCLDECTANIDTQTASKLQNAIANECRGTTVITIAHRISTVLNMDNILILDQGILVEQ 1434
Query: 1406 GNPQTLLQDECSVFSSFVRASTM 1428
GNP LLQD+ S+FSSF RAS M
Sbjct: 1435 GNPNVLLQDDSSLFSSFFRASKM 1457
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184186|ref|NP_178811.7| multidrug resistance-associated protein 11 [Arabidopsis thaliana] gi|330251033|gb|AEC06127.1| multidrug resistance-associated protein 11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1788 bits (4631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1443 (63%), Positives = 1110/1443 (76%), Gaps = 92/1443 (6%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQ 257
N S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CWQ
Sbjct: 191 R-----IEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCWQ 245
Query: 258 AQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD 317
Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 246 LQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK---------- 295
Query: 318 GYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGE 377
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+GE
Sbjct: 296 ---------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEGE 340
Query: 378 IQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKW 437
IQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKW
Sbjct: 341 IQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKW 400
Query: 438 IANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTR 497
I+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TR
Sbjct: 401 ISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLATR 460
Query: 498 KYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVIN 557
KYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVIN
Sbjct: 461 KYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVIN 520
Query: 558 GLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYC 617
GLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 521 GLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWSS 569
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AYV
Sbjct: 570 NVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYV 629
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737
PQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSGG
Sbjct: 630 PQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSGG 689
Query: 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 797
QRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QAI
Sbjct: 690 QRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQAI 749
Query: 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANKQ 855
S ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 750 SCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------ET 800
Query: 856 ILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASR 915
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ SR
Sbjct: 801 LSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGSR 860
Query: 916 NGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 975
NGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV VH
Sbjct: 861 NGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHVH 920
Query: 976 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLS 1035
N L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVLS
Sbjct: 921 NALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLS 980
Query: 1036 YVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFK 1095
YVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAFK
Sbjct: 981 YVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFK 1040
Query: 1096 SEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ------------------------- 1130
SE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQ
Sbjct: 1041 SEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPIS 1100
Query: 1131 ------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP 1184
VGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1101 FGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLSD 1160
Query: 1185 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1244
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLTP
Sbjct: 1161 KWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTP 1220
Query: 1245 ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1304
+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+K
Sbjct: 1221 VCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDK 1280
Query: 1305 CHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
C VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TAS
Sbjct: 1281 CKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTAS 1340
Query: 1364 ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1423
+L N ISSECKG+TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSFV
Sbjct: 1341 LLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSFV 1400
Query: 1424 RAS 1426
RAS
Sbjct: 1401 RAS 1403
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298286923|sp|Q9SKX0.3|AB13C_ARATH RecName: Full=ABC transporter C family member 13; Short=ABC transporter ABCC.13; Short=AtABCC13; AltName: Full=ATP-energized glutathione S-conjugate pump 11; AltName: Full=Glutathione S-conjugate-transporting ATPase 11; AltName: Full=Multidrug resistance-associated protein 11 | Back alignment and taxonomy information |
|---|
Score = 1785 bits (4622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1444 (63%), Positives = 1110/1444 (76%), Gaps = 88/1444 (6%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDCNT-DSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW 256
N S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CW
Sbjct: 191 RIVRRLFLEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCW 250
Query: 257 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 316
Q Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 251 QLQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK--------- 301
Query: 317 DGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 376
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+G
Sbjct: 302 ----------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEG 345
Query: 377 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 436
EIQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNK
Sbjct: 346 EIQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNK 405
Query: 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 496
WI+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+T
Sbjct: 406 WISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLAT 465
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
RKYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVI
Sbjct: 466 RKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVI 525
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 616
NGLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 526 NGLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWS 574
Query: 617 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY 676
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AY
Sbjct: 575 SNVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAY 634
Query: 677 VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736
VPQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSG
Sbjct: 635 VPQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSG 694
Query: 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796
GQRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QA
Sbjct: 695 GQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQA 754
Query: 797 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANK 854
IS ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 755 ISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------E 805
Query: 855 QILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQAS 914
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ S
Sbjct: 806 TLSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGS 865
Query: 915 RNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974
RNGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV V
Sbjct: 866 RNGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHV 925
Query: 975 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL 1034
HN L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVL
Sbjct: 926 HNALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVL 985
Query: 1035 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094
SYVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAF
Sbjct: 986 SYVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAF 1045
Query: 1095 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ------------------------ 1130
KSE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQ
Sbjct: 1046 KSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPI 1105
Query: 1131 -------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1183
VGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1106 SFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLS 1165
Query: 1184 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1243
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLT
Sbjct: 1166 DKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLT 1225
Query: 1244 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
P+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+
Sbjct: 1226 PVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILD 1285
Query: 1304 KCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
KC VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TA
Sbjct: 1286 KCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTA 1345
Query: 1363 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1422
S+L N ISSECKG+TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSF
Sbjct: 1346 SLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSF 1405
Query: 1423 VRAS 1426
VRAS
Sbjct: 1406 VRAS 1409
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831764|ref|XP_002883764.1| ATMRP11 [Arabidopsis lyrata subsp. lyrata] gi|297329604|gb|EFH60023.1| ATMRP11 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1677 bits (4343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1236 (68%), Positives = 986/1236 (79%), Gaps = 76/1236 (6%)
Query: 223 MNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYI 282
M G +KQL+FE+LL LP DMDP TC LL CWQ Q N + PSL+ +I YG+PY
Sbjct: 1 MKHGSVKQLEFENLLPLPPDMDPFTCCENLLRCWQLQECNNYSTPSLIWSISGVYGWPYF 60
Query: 283 CLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFH 342
LGLLKV ND IGFAGPL LN+LIK SF DTQY+F
Sbjct: 61 RLGLLKVFNDCIGFAGPLFLNRLIK-------------------------SFLDTQYTFR 95
Query: 343 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 402
LSK KLKLRSSIM++IY+KCL+V A RS FS+GEIQTFMSVD DR VNL NS HD WSL
Sbjct: 96 LSKFKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTFMSVDADRIVNLCNSLHDMWSL 155
Query: 403 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGE 462
P QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEKMMK KDERIR+TGE
Sbjct: 156 PLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVLIASATEKMMKLKDERIRKTGE 215
Query: 463 ILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGL 522
+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLDAWCVFFWATTPTLFSL TFGL
Sbjct: 216 LLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLDAWCVFFWATTPTLFSLCTFGL 275
Query: 523 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582
FALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLIDAFIS RR+++FL C E+ +
Sbjct: 276 FALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLIDAFISTRRVSKFLCCLEHSRDF 335
Query: 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 642
I +GL+ S+D+AV ++DA+ +W N EE+ N+ + VSL +PKGS VAV
Sbjct: 336 S--------IDSGLT---SEDLAVFVEDASSTWSSNLEEDYNLTIKHVSLRVPKGSFVAV 384
Query: 643 IGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQS 702
IGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVPWILSGTIR+NILFGK +D +S
Sbjct: 385 IGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVPWILSGTIRENILFGKPFDSKS 444
Query: 703 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 762
Y ETL AC LDVDISLM GGDMA IG+KGVNLSGGQRARLALARAVYHGSD+Y+LDDVLS
Sbjct: 445 YFETLSACALDVDISLMAGGDMACIGDKGVNLSGGQRARLALARAVYHGSDMYLLDDVLS 504
Query: 763 AVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822
AVD+QV WIL A++GP + +KTR++CTHN+QAIS ADM+VVMDKG+VKW G+ D+
Sbjct: 505 AVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQAISCADMIVVMDKGKVKWSGTVTDMPK 564
Query: 823 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEG 882
S+ F +N+FD N + K+ L +KD + +A +I+++E+RKEG
Sbjct: 565 SISPTFSLSNDFDMP--------SPNHLTKRKEPLSIKKDDLDEISEAADIVKLEERKEG 616
Query: 883 RVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYL 942
RVE+TVY+NYA FSGWFI +VI +SA+LMQASRNGNDLWLSYWVD TG + YSTSFYL
Sbjct: 617 RVEVTVYRNYAAFSGWFIAIVILVSAVLMQASRNGNDLWLSYWVDKTGRGVSHYSTSFYL 676
Query: 943 VVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRF 1002
+VLCIFC+ NS LTLVRAFSFAFG L+AAV VH+ L++K++NAP FFDQTP GRILNRF
Sbjct: 677 MVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHSALISKLINAPTQFFDQTPSGRILNRF 736
Query: 1003 SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062
SSDLY IDDSLPFILNILLANFVGLLGI VLSYVQV FLLLL+PFW+IYSKLQFFYRST
Sbjct: 737 SSDLYTIDDSLPFILNILLANFVGLLGIIAVLSYVQVLFLLLLLPFWYIYSKLQFFYRST 796
Query: 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122
SRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++F+A+F EH+ LYQRTSYSE+ AS
Sbjct: 797 SRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVARFIEHLTLYQRTSYSEIIAS 856
Query: 1123 LWLSLRLQ-------------------------------VGLALSYAAPIVSLLGNFLSS 1151
LWLSLRLQ VGLALSYAAP+VSLLG+FL+S
Sbjct: 857 LWLSLRLQLLGAMIVLFVAVMAVLGSRGNFPISFGTPGLVGLALSYAAPLVSLLGSFLTS 916
Query: 1152 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1211
FTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP QGL+EF NVTMRY +LP AL+
Sbjct: 917 FTETEKEMVSIERVLQYMDVPQEEVSGRQSLSGKWPVQGLVEFHNVTMRYISTLPPALNH 976
Query: 1212 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271
I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G+ILVDG+NI + P+R LR AV
Sbjct: 977 ISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCNGEILVDGININHLPIRKLRSHLAV 1036
Query: 1272 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGLETFVKESGISFSVG 1330
VPQSPFLF+GSLRDNLDP +++D +IW +LEKC VK EVE A GL++ VKESG S+SVG
Sbjct: 1037 VPQSPFLFQGSLRDNLDPLGLSEDWRIWEILEKCKVKAEVESAGGLDSNVKESGCSYSVG 1096
Query: 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1390
QRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N IS+ECKG+TVITIAHRISTVL+
Sbjct: 1097 QRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISTECKGVTVITIAHRISTVLD 1156
Query: 1391 MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426
+D ILILD G LVEQG PQ LLQD+ S FSSFVRAS
Sbjct: 1157 LDSILILDRGILVEQGKPQHLLQDDSSTFSSFVRAS 1192
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204674|emb|CBI25172.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1623 bits (4204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/1143 (72%), Positives = 919/1143 (80%), Gaps = 100/1143 (8%)
Query: 362 CLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAF 421
CL V LAERS+FS+GEIQTFMSVD DR VNL NSFHD WSLP QIG+ALYLLYTQVKFAF
Sbjct: 87 CLCVNLAERSKFSEGEIQTFMSVDADRIVNLCNSFHDMWSLPLQIGLALYLLYTQVKFAF 146
Query: 422 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSS 481
VSG+AITILLIPVNKWI+ IA ATEKMMK+KDERI +T EIL +IRTLKMYGWE +F S
Sbjct: 147 VSGIAITILLIPVNKWISKFIARATEKMMKKKDERISKTAEILAYIRTLKMYGWELLFMS 206
Query: 482 WLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLAL 541
WLM+ RSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF LMG+QLDAAMVFTCLAL
Sbjct: 207 WLMEIRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGYQLDAAMVFTCLAL 266
Query: 542 FNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK-HELEQAANSPSYISNGLS-NF 599
FN+LISPLNSFPWVINGLIDA IS RRL+RFL CSE+K ELEQ A SPS S NF
Sbjct: 267 FNTLISPLNSFPWVINGLIDAIISTRRLSRFLSCSEHKPAELEQTAGSPSSPSFSGQFNF 326
Query: 600 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
+DMAV M DA+C+W + E E+++VL+ V+L LP+GSLVA+IGEVGSGKSSLLNSIL
Sbjct: 327 KLEDMAVAMYDASCAWSSSEEVEKDLVLHHVTLGLPRGSLVAIIGEVGSGKSSLLNSILK 386
Query: 660 EMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
EM L HGSI++ GSI YVPQVPWILSGTIR+NILFGK YDP YS+ L+AC LD+DISLM
Sbjct: 387 EMRLIHGSIYSDGSITYVPQVPWILSGTIRENILFGKAYDPTRYSDVLEACALDIDISLM 446
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
VGGDMAYIG+KGVNLSGGQRARLALARA+YHGSDI+MLDDVLSAVD QVAR IL NAI+G
Sbjct: 447 VGGDMAYIGDKGVNLSGGQRARLALARAIYHGSDIFMLDDVLSAVDTQVARCILHNAILG 506
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLH 839
P M Q TR+LCTHN+QA+S+ADM+VVMDKG VKW+G
Sbjct: 507 PLMNQHTRVLCTHNIQAMSSADMIVVMDKGHVKWVG------------------------ 542
Query: 840 MQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWF 899
++ E TN S+ KQ E+D + V +AQEIIEVE RKEGRVELTVYK+YA +SGWF
Sbjct: 543 IRSLECSTNTSTETKQDCKPERDSICVPGEAQEIIEVELRKEGRVELTVYKSYATYSGWF 602
Query: 900 ITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFY----------------- 941
IT+VICLSAILMQASRNGNDLWLSYWVD TTGSS T+YSTSFY
Sbjct: 603 ITVVICLSAILMQASRNGNDLWLSYWVDTTTGSSHTEYSTSFYLVLLVLIKEEFVKSMVE 662
Query: 942 ------------------------LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 977
LVVLCIFC+ NSFLTLVRAFSFAFG LRAAV+VHNT
Sbjct: 663 HEQFYVNVQCFLNEFEANGVSFFLLVVLCIFCVINSFLTLVRAFSFAFGGLRAAVQVHNT 722
Query: 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYV 1037
LL+K++NAPV FFD+TPGGRILNR SSDLY IDDSLPFILNILLAN VGLLGIA+VLSYV
Sbjct: 723 LLSKLINAPVHFFDKTPGGRILNRMSSDLYTIDDSLPFILNILLANIVGLLGIAIVLSYV 782
Query: 1038 QVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE 1097
QV FLLLL+PFW++YSK+QF+YRSTSRELRRLDSVSRSPI+ASFTETL+GSSTIRAFK E
Sbjct: 783 QVVFLLLLLPFWYVYSKIQFYYRSTSRELRRLDSVSRSPIFASFTETLDGSSTIRAFKCE 842
Query: 1098 DYFMAKFKEHVVLYQRTSYSELTA-----------------------------SLWLSLR 1128
D F +F EHV LYQ+TSYSEL A SL +SL
Sbjct: 843 DLFFTRFSEHVALYQQTSYSELIASLWLSLRLQLLAALVISFVAMMAVIGSRDSLPISLG 902
Query: 1129 LQ--VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1186
VGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERVL+YMD+PQEEL G QSLSP+W
Sbjct: 903 TPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLQYMDIPQEELNGCQSLSPNW 962
Query: 1187 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1246
P +G I FQNV++RY PSLP ALHDI FTI GGTQVGI+GRTGAGKSSILNALFRLTPIC
Sbjct: 963 PSEGYIMFQNVSLRYLPSLPDALHDITFTISGGTQVGIIGRTGAGKSSILNALFRLTPIC 1022
Query: 1247 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1306
G ILVDGL+I + PVRDLR FAVVPQSPFLFEGSLRDNLDPF ++DDLKIW LE+CH
Sbjct: 1023 KGCILVDGLDIADVPVRDLRSHFAVVPQSPFLFEGSLRDNLDPFRVSDDLKIWKTLERCH 1082
Query: 1307 VKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
VKEEVE A GL+ VKESG SFSVGQRQL+CLARALLKSSKVLCLDECTAN+DAQT+S+L
Sbjct: 1083 VKEEVEVAGGLDIHVKESGTSFSVGQRQLLCLARALLKSSKVLCLDECTANIDAQTSSVL 1142
Query: 1366 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425
QNAI +EC+GMTVITIAHRISTVL+MD ILILD G LVEQGNPQ LLQD S FS F +A
Sbjct: 1143 QNAILTECRGMTVITIAHRISTVLSMDNILILDRGILVEQGNPQVLLQDHSSRFSGFAKA 1202
Query: 1426 STM 1428
STM
Sbjct: 1203 STM 1205
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5001458|gb|AAD37023.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1553 bits (4021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 782/1130 (69%), Positives = 917/1130 (81%), Gaps = 65/1130 (5%)
Query: 332 KSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVN 391
+SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+GEIQTFMSVD DR VN
Sbjct: 46 RSFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTFMSVDADRIVN 105
Query: 392 LANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMK 451
L NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEKMMK
Sbjct: 106 LCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVLIASATEKMMK 165
Query: 452 QKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 511
KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLDAWCVFFWATT
Sbjct: 166 LKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLDAWCVFFWATT 225
Query: 512 PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 571
PTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLIDAFIS RR+++
Sbjct: 226 PTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLIDAFISTRRVSK 285
Query: 572 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVS 631
FL C E+ + I +G F S+D+AV ++DA+C+W N EE+ N+ + QVS
Sbjct: 286 FLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWSSNVEEDYNLTIKQVS 334
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDN 691
L +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVPW+LSGT+R+N
Sbjct: 335 LRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVPWLLSGTVREN 394
Query: 692 ILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751
ILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSGGQRAR ALARAVYHG
Sbjct: 395 ILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSGGQRARFALARAVYHG 454
Query: 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQ 810
SD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+Q + + M+VVMDKG+
Sbjct: 455 SDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQVSNLSTHMIVVMDKGK 514
Query: 811 VKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANKQILLQEKDVVSVSD 868
V W GS D+ S+ F TNEFD S H+ K++ + + ++E V +S+
Sbjct: 515 VNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------ETLSIKEDGVDEISE 565
Query: 869 DAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT 928
A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ SRNGNDLWLSYWVD
Sbjct: 566 AAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGSRNGNDLWLSYWVDK 625
Query: 929 TGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 988
TG +VLCIFC+ NS LTLVRAFSFAFG L+AAV VHN L++K++NAP
Sbjct: 626 TGKG----------MVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHNALISKLINAPTQ 675
Query: 989 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1048
FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVLSYVQV FLLLL+PF
Sbjct: 676 FFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLSYVQVLFLLLLLPF 735
Query: 1049 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1108
W+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++F+ +F EH+
Sbjct: 736 WYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVGRFIEHL 795
Query: 1109 VLYQRTSYSELTASLWLSLRLQ-------------------------------VGLALSY 1137
LYQRTSYSE+ ASLWLSLRLQ VGLALSY
Sbjct: 796 TLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPISFGTPGLVGLALSY 855
Query: 1138 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1197
AAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP GL+EF NV
Sbjct: 856 AAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLSDKWPVHGLVEFHNV 915
Query: 1198 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1257
TMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G+ILVDG NI
Sbjct: 916 TMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSGEILVDGKNI 975
Query: 1258 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GL 1316
+ P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+KC VK VE+V GL
Sbjct: 976 SHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVKAAVESVGGL 1035
Query: 1317 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1376
+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N ISSECKG+
Sbjct: 1036 DSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISSECKGV 1095
Query: 1377 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426
TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSFVRAS
Sbjct: 1096 TVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSFVRAS 1145
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358346459|ref|XP_003637285.1| ABC transporter C family member [Medicago truncatula] gi|355503220|gb|AES84423.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1546 bits (4004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 768/1168 (65%), Positives = 924/1168 (79%), Gaps = 41/1168 (3%)
Query: 4 ICPNSPFVWDG--STFSKCFDDMIL----DFATNMVTIFIILIIGITQR-----SPRQNQ 52
ICPNSP V + ++L FA N+VTI +IL++GI Q+ + R +
Sbjct: 13 ICPNSPSVPFKIIKVLYEFHISLVLVYFTGFAVNVVTIAMILVLGIKQKISGRGTQRSDA 72
Query: 53 RINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLS 112
+++L+EK L+ +P +GAC S ++++ LLK++ G FV YH WL SCSE VW I+L +
Sbjct: 73 QMSLLEKFVLYFVPAIGACCSVLEIMFLLKKEHDGHFVGYHRWLHSCSELLVWANIILFT 132
Query: 113 RCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINI 172
+CA HC+ +R+LCFWWI+ P++GI H + F S EV C+ E +VL+++ FG+ IN+
Sbjct: 133 KCASIHCIVFNRVLCFWWILNPILGIFHLITNFPSLEVSACIMESLVVLMNLSFGVVINV 192
Query: 173 IRVKRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLD 232
IR+KR SS+ S +E+ LLS GD+EE N D NN ++WD M FK I VMN+GV+KQLD
Sbjct: 193 IRLKRLSSKSSLLEDPLLSNGGDLEEGGNHDLENNCNFWDFMTFKFISPVMNQGVLKQLD 252
Query: 233 FEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVND 292
+DLL L DM PS CH +L+ W+AQ S N NPSL A+C AYG+PY+CLGLLKV+ND
Sbjct: 253 SDDLLPLLPDMGPSFCHDIILNSWRAQVSNNSLNPSLFSALCNAYGWPYLCLGLLKVIND 312
Query: 293 SIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352
IGFAGPLLLNKLIKFLQQGS DGY+LA++LGLTSI+KSF DTQY+F LSKLKLKLRS
Sbjct: 313 GIGFAGPLLLNKLIKFLQQGSASWDGYLLALSLGLTSIIKSFLDTQYTFRLSKLKLKLRS 372
Query: 353 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL 412
SIMT+IY+KCLYV LAERS+F++GEIQTFMSVD DRTVNL NSFHD WSLP QIGVALYL
Sbjct: 373 SIMTLIYEKCLYVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYL 432
Query: 413 LYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKM 472
LYTQVKFAFVSGLAI ILLIPVNKWI+ LIA ATE+MMK+KDERIRRTGE+LT+IRTLKM
Sbjct: 433 LYTQVKFAFVSGLAIAILLIPVNKWISTLIARATEQMMKEKDERIRRTGELLTYIRTLKM 492
Query: 473 YGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDA 532
YGWE +FSSWLM TRS EVKHL+TRKYLDAWCVFFWATTP+LFSL TFGLFALMGHQLDA
Sbjct: 493 YGWELLFSSWLMATRSLEVKHLATRKYLDAWCVFFWATTPSLFSLSTFGLFALMGHQLDA 552
Query: 533 AMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYI 592
A VFTC+ALFN+LISPLNSFPWVINGLIDA IS RRL+RFL C E++ E+ + NS
Sbjct: 553 ATVFTCIALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHRREVGE--NSSCSS 610
Query: 593 SNGLSNFNS-KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 651
S +S +D+AV +QDA CSW +EE +N+VLN V+L L KGS VAVIGEVGSGKS
Sbjct: 611 SFLSKQPDSLQDLAVFIQDACCSWSSGDEEAKNLVLNHVTLSLSKGSFVAVIGEVGSGKS 670
Query: 652 SLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711
SL+ SILGEM L HGSI++ GS+AYVPQVPW++SGT+RDNILFGK+Y+P+ Y++T+ AC
Sbjct: 671 SLIYSILGEMRLDHGSIYSHGSVAYVPQVPWVISGTVRDNILFGKSYNPERYADTINACA 730
Query: 712 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 771
LDVDIS MVGGDMAYIGEKGVNLSGGQRARLALAR +YH SD+ MLDD+LSAVD QVA+W
Sbjct: 731 LDVDISSMVGGDMAYIGEKGVNLSGGQRARLALARVLYHDSDVIMLDDILSAVDVQVAQW 790
Query: 772 ILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWST 831
IL NAI+GP + KTR+LCTHN+QAIS+ADM +V+DKG VKW+G S+D SLY+ F
Sbjct: 791 ILHNAILGPLLKGKTRLLCTHNIQAISSADMTIVLDKGCVKWMGISSDFPTSLYTEFSPL 850
Query: 832 NEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKN 891
NE D++ H +Q N+S + +Q L ++ V+ + +++IEVE RKEG+VEL VYKN
Sbjct: 851 NEMDSTPHNHQQSCSINSSISEEQS-LPDRIVMDTLEGEEDVIEVELRKEGKVELGVYKN 909
Query: 892 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCM 950
YA F+GWFI ++ICLSA+LMQASRN NDLWLSYWVDTT QT YS SFYL +LC+FC+
Sbjct: 910 YAAFTGWFIAVIICLSALLMQASRNANDLWLSYWVDTTTEDGQTSYSMSFYLAILCLFCI 969
Query: 951 FNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN-------RFS 1003
NS TLVRAFSFAFG L+AA KVHN LL+K++NAPV FFDQTPGGRILN R S
Sbjct: 970 MNSIFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLEYDVFRLS 1029
Query: 1004 SDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQ------------------VFFLLLL 1045
SDLY IDDSLPFILNILLANFVGLLGIA++LSYVQ VFFL+LL
Sbjct: 1030 SDLYTIDDSLPFILNILLANFVGLLGIAIILSYVQVFMIFLSFFFLCTAILKFVFFLVLL 1089
Query: 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFK 1105
+PFW+IYS+LQFFYRSTSRELRRLDSVSRSPIY SFTETL+GSSTIRAFKSED+F +KF
Sbjct: 1090 LPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFSKFT 1149
Query: 1106 EHVVLYQRTSYSELTASLWLSLRLQVGL 1133
+H+ LYQ+TSY+E+ ASLWLSLRLQV L
Sbjct: 1150 DHITLYQKTSYTEIVASLWLSLRLQVSL 1177
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1428 | ||||||
| UNIPROTKB|E1C368 | 1515 | ABCC10 "Uncharacterized protei | 0.534 | 0.503 | 0.353 | 6.4e-240 | |
| UNIPROTKB|E1BNL1 | 1490 | ABCC10 "Uncharacterized protei | 0.398 | 0.381 | 0.381 | 7.7e-216 | |
| RGD|1306696 | 1499 | Abcc10 "ATP-binding cassette, | 0.412 | 0.392 | 0.371 | 2.9e-212 | |
| MGI|MGI:2386976 | 1501 | Abcc10 "ATP-binding cassette, | 0.421 | 0.401 | 0.365 | 4.2e-212 | |
| UNIPROTKB|Q5T3U5 | 1492 | ABCC10 "Multidrug resistance-a | 0.441 | 0.422 | 0.364 | 5.6e-212 | |
| UNIPROTKB|F1PF73 | 1490 | ABCC10 "Uncharacterized protei | 0.413 | 0.396 | 0.361 | 6.1e-212 | |
| FB|FBgn0032018 | 1487 | CG7806 [Drosophila melanogaste | 0.632 | 0.607 | 0.345 | 1.5e-192 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.404 | 0.374 | 0.351 | 5.3e-179 | |
| UNIPROTKB|I3L4X2 | 1440 | ABCC1 "Multidrug resistance-as | 0.466 | 0.462 | 0.335 | 3.8e-178 | |
| TAIR|locus:2028155 | 1495 | ABCC11 "ATP-binding cassette C | 0.623 | 0.595 | 0.295 | 1.5e-177 |
| UNIPROTKB|E1C368 ABCC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1184 (421.8 bits), Expect = 6.4e-240, Sum P(4) = 6.4e-240
Identities = 278/786 (35%), Positives = 424/786 (53%)
Query: 206 NNQSYWDLMAFKSIDSVMNRGVIKQLDF-EDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 264
+ +S+ + ++ +M RG +L+ +D+ LP + + + +CWQ
Sbjct: 228 DGESWLSRFFYAWMNPLMKRGYQWKLNQPQDVCLLPRKLQAARVCDRFYACWQKSHHAQE 287
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAI 323
T L+ + A+G + LGLLK+ +GF+GPLLLN L+ F++ L G + A+
Sbjct: 288 T-VRLLSVLHAAFGLRFYSLGLLKLAGSLLGFSGPLLLNLLVNFMESRQEPLSHGVLYAL 346
Query: 324 ALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 383
L S + + Q+S+ +++ IY+K L V S F+ GEI FMS
Sbjct: 347 GLFAGSFVGALLRNQFSYEVQKVTLMVRAAVISAIYRKALRVGSTSLSCFTVGEIVNFMS 406
Query: 384 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 443
DT R VN SFH+ WSLPFQ + LYLLY QV AF+ GLA+ +LL+P+NK IAN I
Sbjct: 407 TDTSRLVNFCLSFHEVWSLPFQFAITLYLLYQQVGVAFLGGLALALLLVPINKVIANRIM 466
Query: 444 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503
+ +M++ KD R++ E L+ IR +K Y WE+ FS+ + R+ E++ L KYLDA
Sbjct: 467 ESNAEMLEHKDARVKLMTEFLSGIRVIKFYAWEKHFSTRINTCRAKELQKLRAIKYLDAV 526
Query: 504 CVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAF 563
CV+ WA P + S+ F + LMGHQL A VFT LAL LI PLNSFPWV+NG ++A
Sbjct: 527 CVYLWAALPVVVSIVIFITYVLMGHQLTATKVFTALALVGMLILPLNSFPWVLNGTLEAK 586
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMA-VIMQDATCSWYCXXXXX 622
+S+ R+ RFL + E A SPS + + + D + V +++ + S
Sbjct: 587 VSLDRIQRFLELVDQDLEAYYALGSPSGTATAI-DIRGADFSWVPVKEESTS---QPLST 642
Query: 623 XXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---SIAYVPQ 679
+L + KG L+ V+G+VGSGKSSLL +I GE++ G ++ Q
Sbjct: 643 GSLQLHIENLSVRKGMLLGVVGKVGSGKSSLLAAITGELIKQGGQVYICDLEQGFGLATQ 702
Query: 680 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQX 739
PWI T+R+NILFG+ YD + Y E ++AC L D++++ GD +GE GV LSGGQ
Sbjct: 703 EPWIQFTTVRENILFGRQYDARLYEEVVEACALSEDLNILPAGDQTEVGENGVTLSGGQK 762
Query: 740 XXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAIS 798
VY ++Y+LDD L+AVDA VA ++ I+G +LQ KTRILCTH + +
Sbjct: 763 ARIALARAVYQEKELYLLDDPLAAVDADVANHLMQKCILG--ILQHKTRILCTHRTEFLE 820
Query: 799 AADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILL 858
AD +++MD G++ G AD+ + L + + + K + ++ ++ ++
Sbjct: 821 KADALLLMDNGRIIKTGPPADI-LPLVESVPKFKDMNKRRN-DKASVPADSDEQGQEEVI 878
Query: 859 QEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGN 918
+ + S+ D + + E++KEG ++ VYK Y G + L I S +LMQASRN +
Sbjct: 879 ETEAEESLQDKCL-LHKEEEKKEGALDFQVYKAYWLAMGSCLALSILFSLLLMQASRNIS 937
Query: 919 DLWLSYWVD----TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974
D WLS+W+ T +S STS L +F + ++ ++A A A+V V
Sbjct: 938 DWWLSHWISSISQTANTSVMASSTSLPSTKLLLFSIVG-LVSPIQALDTAPVPSNASVDV 996
Query: 975 HNTLLT 980
N LT
Sbjct: 997 -NFYLT 1001
|
|
| UNIPROTKB|E1BNL1 ABCC10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1023 (365.2 bits), Expect = 7.7e-216, Sum P(4) = 7.7e-216
Identities = 229/601 (38%), Positives = 334/601 (55%)
Query: 225 RGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICL 284
RG ++Q +D LP + P+ + WQ L R + A+G+ Y+ L
Sbjct: 238 RGELRQP--QDTCRLPHRLHPTYLARVFQAQWQE-------GARLWRTLHGAFGHCYLAL 288
Query: 285 GLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLT--SILKSFFDTQYSFH 342
GLLK+V +GF+GPLLL+ L+ FL++G L + L ALGLT ++L + QY +
Sbjct: 289 GLLKLVGTMLGFSGPLLLSLLVGFLEEGREPLS-HGLLYALGLTGGAVLGAVLQNQYGYE 347
Query: 343 XXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 402
++ I+Y+K L +L R + GE+ + D++R +N A SFH+AW L
Sbjct: 348 VRKVALQARGAVLNILYRKAL--QLGPRRPPA-GEVLNLLGTDSERLLNFAGSFHEAWGL 404
Query: 403 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGE 462
P Q+ + LYLL+ QV AFV GL + +LL+PVNK IA I + ++M++ KD R++ E
Sbjct: 405 PLQLAITLYLLHQQVGVAFVGGLILALLLVPVNKVIATRIMASNQEMLQHKDARVKLVTE 464
Query: 463 ILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGL 522
+L+ +R +K +GWEQ + + R+ E+ L KYLDA CV+ WA P + S+ F
Sbjct: 465 LLSGMRVIKFFGWEQALGTRVEACRARELGRLRVIKYLDAACVYLWAALPVVISIVIFIT 524
Query: 523 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582
+ LMGHQL A VFT LAL LI PLN+FPWVINGL++A +S+ R+ FL + +
Sbjct: 525 YVLMGHQLTATKVFTALALVRMLILPLNNFPWVINGLLEAKVSLDRIQCFLDLPNHDPQA 584
Query: 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXXXXXXXXXXXSLCLPKGSLVAV 642
+ + P+ S L + +A SW L + KG LV +
Sbjct: 585 YYSPDPPTEPSTALE----------LHEALFSW---DPVGTSQETFISHLEVKKGMLVGI 631
Query: 643 IGEVGSGKSSLLNSILGEMMLTHGSIHASG---SIAYVPQVPWILSGTIRDNILFGKNYD 699
+G+VG GKSSLL +I GE+ G + G Q PWI TIRDNILFGK +D
Sbjct: 632 VGKVGCGKSSLLAAITGELHRLRGQVAVWGLSKGFGLATQEPWIQFATIRDNILFGKTFD 691
Query: 700 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSDIYMLDD 759
Q Y E L+AC LD D+S++ GD +GEKGV LSGGQ VY ++Y+LDD
Sbjct: 692 AQLYKEVLEACALDEDLSILPAGDQTEVGEKGVTLSGGQRARIALARAVYQEKELYLLDD 751
Query: 760 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSAD 819
L+AVDA VA +L I+G + TR+LCTH + + ADMV++++ G++ G ++
Sbjct: 752 PLAAVDADVATHLLHRCILGA-LSHTTRLLCTHRTEYLERADMVLLLEAGRLVRAGPPSE 810
Query: 820 L 820
+
Sbjct: 811 I 811
|
|
| RGD|1306696 Abcc10 "ATP-binding cassette, subfamily C (CFTR/MRP), member 10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1015 (362.4 bits), Expect = 2.9e-212, Sum P(4) = 2.9e-212
Identities = 231/622 (37%), Positives = 341/622 (54%)
Query: 206 NNQSYWDLMAFKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 264
+ +S+ ++ + ++ RGV +L +D LP + P+ + W+
Sbjct: 217 DGESWLSRFSYAWLAPLLARGVRGELRQPQDTCRLPRRLHPAYLARAFQAHWKE------ 270
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-G--YVL 321
L RA+ A+G YI LGLLK+V +GF+GPLLL+ L+ FL++G L G YVL
Sbjct: 271 -GAQLWRALYGAFGCCYIALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSHGLLYVL 329
Query: 322 AIALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTF 381
+A G S++ + QY + +++I+Y+K L +L S GE+
Sbjct: 330 GLASG--SVISAVLQNQYGYEVRKVTLQARVAVLSILYRKTL--KLGP-SRPPTGEVLNL 384
Query: 382 MSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANL 441
+ D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVNK IA
Sbjct: 385 LGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYEQVGVAFLAGLVLALLLVPVNKVIATR 444
Query: 442 IANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 501
I ++M++ KD R++ E+L+ IR LK + WEQ + R+ E+ L KYLD
Sbjct: 445 IMANNQEMLRHKDARVKLMTELLSGIRVLKFFRWEQALGDRVKACRTQELGRLRVIKYLD 504
Query: 502 AWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLID 561
A CV+ WA P + + F + L+GHQL A VFT LAL + LI PLN+FPWVINGL++
Sbjct: 505 AACVYLWAALPVVICIVIFITYVLLGHQLTATKVFTALALVHMLILPLNNFPWVINGLLE 564
Query: 562 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXX 621
+ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 565 SKVSLDRIQRFLDLPSYSPEAYYSPDPPTEPSTVLE----------LHEALFSW---DPT 611
Query: 622 XXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---SIAYVP 678
L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 612 GTSQKTFISHLQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSDLSKGFGLAT 671
Query: 679 QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
Q PWI TIRDN+LFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV LSGGQ
Sbjct: 672 QEPWIQCATIRDNVLFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGVTLSGGQ 731
Query: 739 XXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
VY +Y+LDD L+AVDA VA +L I+G + TR+LCTH + +
Sbjct: 732 RARIALARAVYQEKTLYLLDDPLAAVDADVANHLLHRCILGV-LGHTTRLLCTHRTEYLE 790
Query: 799 AADMVVVMDKGQVKWIGSSADL 820
AD+V++M+ G++ G +++
Sbjct: 791 RADLVLLMEAGRLVRAGPPSEI 812
|
|
| MGI|MGI:2386976 Abcc10 "ATP-binding cassette, sub-family C (CFTR/MRP), member 10" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1013 (361.7 bits), Expect = 4.2e-212, Sum P(4) = 4.2e-212
Identities = 233/637 (36%), Positives = 343/637 (53%)
Query: 206 NNQSYWDLMAFKSIDSVMNRGVIKQLDF-EDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 264
+ +S+ ++ + ++ RGV +L D LP + P+ + W+
Sbjct: 217 DGESWLSRFSYAWLAPLLARGVRGELQQPRDTCRLPRRLHPAFLARVFQAHWKE------ 270
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-G--YVL 321
L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L G YVL
Sbjct: 271 -GAQLWRALYRAFGCCYLALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSHGLLYVL 329
Query: 322 AIALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTF 381
+A G +++ + QY + +++ +Y+K L +L S GE+
Sbjct: 330 GLAGG--TVISAVLQNQYGYEVRKVTLQARVAVLSTLYRKAL--KLGP-SRPPTGEVLNL 384
Query: 382 MSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANL 441
+ D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVNK IA
Sbjct: 385 LGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGMAFLAGLVLALLLVPVNKVIATR 444
Query: 442 IANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 501
I + ++M++ KD R++ E+L+ IR +K + WEQ + R+ E+ L KYLD
Sbjct: 445 IMASNQEMLRHKDARVKLMTELLSGIRVIKFFRWEQALGDRVKACRTKELGRLRVIKYLD 504
Query: 502 AWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLID 561
A CV+ WA P + + F + LMGHQL A VFT LAL LI PLN+FPWVINGL++
Sbjct: 505 AACVYLWAALPVVICITIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWVINGLLE 564
Query: 562 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXX 621
+ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 565 SKVSLDRIQRFLDLPSYSPEAYYSPDPPAEPSTALE----------LHEALFSW---DPI 611
Query: 622 XXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGSIAYVP 678
L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 612 GASQKTFISHLQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSELSKGFGLAT 671
Query: 679 QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
Q PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV LSGGQ
Sbjct: 672 QEPWIQCATIRDNILFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGVTLSGGQ 731
Query: 739 XXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
VY +Y+LDD L+AVDA VA +L I+G + TR+LCTH + +
Sbjct: 732 RARIALARAVYQEKALYLLDDPLAAVDADVANHLLHRCILGV-LSHTTRLLCTHRTEYLE 790
Query: 799 AADMVVVMDKGQVKWIGSSADLA--VSLYSGFWSTNE 833
AD+V++M+ GQ+ G +++ V W+ E
Sbjct: 791 RADVVLLMEAGQLVRTGPPSEILPLVQAVPTAWAEKE 827
|
|
| UNIPROTKB|Q5T3U5 ABCC10 "Multidrug resistance-associated protein 7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1011 (360.9 bits), Expect = 5.6e-212, Sum P(4) = 5.6e-212
Identities = 245/672 (36%), Positives = 356/672 (52%)
Query: 206 NNQSYWDLMAFKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 264
+ +S+ ++ + ++ RG +L +D+ LP + P+ + WQ
Sbjct: 216 DGESWLSRFSYAWLAPLLARGACGELRQPQDICRLPHRLQPTYLARVFQAHWQE------ 269
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAI 323
L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L G + A+
Sbjct: 270 -GARLWRALYGAFGRCYLALGLLKLVGTMLGFSGPLLLSLLVGFLEEGQEPLSHGLLYAL 328
Query: 324 ALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 383
L ++L + QY + ++ I+Y K L +L S GE +
Sbjct: 329 GLAGGAVLGAVLQNQYGYEVYKVTLQARGAVLNILYCKAL--QLGP-SRPPTGEALNLLG 385
Query: 384 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 443
D++R +N A SFH+AW LP Q+ + LYLLY QV AFV GL + +LL+PVNK IA I
Sbjct: 386 TDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGVAFVGGLILALLLVPVNKVIATRIM 445
Query: 444 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503
+ ++M++ KD R++ E+L+ IR +K GWEQ + + R+ E+ L KYLDA
Sbjct: 446 ASNQEMLQHKDARVKLVTELLSGIRVIKFCGWEQALGARVEACRARELGRLRVIKYLDAA 505
Query: 504 CVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAF 563
CV+ WA P + S+ F + LMGHQL A VFT LAL LI PLN+FPWVINGL++A
Sbjct: 506 CVYLWAALPVVISIVIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWVINGLLEAK 565
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXXXX 623
+S+ R+ FL + + + + P+ S L + A SW
Sbjct: 566 VSLDRIQLFLDLPNHNPQAYYSPDPPAEPSTVLE----------LHGALFSW---DPVGT 612
Query: 624 XXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---SIAYVPQV 680
L + KG LV ++G+VG GKSSLL +I GE+ G + G Q
Sbjct: 613 SLETFISHLEVKKGMLVGIVGKVGCGKSSLLAAIAGELHRLRGHVAVRGLSKGFGLATQE 672
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXX 740
PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV LSGGQ
Sbjct: 673 PWIQFATIRDNILFGKTFDAQLYKEVLEACALNDDLSILPAGDQTEVGEKGVTLSGGQRA 732
Query: 741 XXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISA 799
VY ++Y+LDD L+AVDA VA +L I+G ML TR+LCTH + +
Sbjct: 733 RIALARAVYQEKELYLLDDPLAAVDADVANHLLHRCILG--MLSYTTRLLCTHRTEYLER 790
Query: 800 ADMVVVMDKGQVKWIGSSADLA--VSLYSGFWSTN--EFD--TSLHMQKQEMRTNASSAN 853
AD V++M+ G++ G +++ V W+ N E D T+ +Q E +T
Sbjct: 791 ADAVLLMEAGRLIRAGPPSEILPLVQAVPKAWAENGQESDSATAQSVQNPE-KTKEGLEE 849
Query: 854 KQI----LLQEK 861
+Q LLQE+
Sbjct: 850 EQSTSGRLLQEE 861
|
|
| UNIPROTKB|F1PF73 ABCC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1007 (359.5 bits), Expect = 6.1e-212, Sum P(4) = 6.1e-212
Identities = 224/620 (36%), Positives = 340/620 (54%)
Query: 206 NNQSYWDLMAFKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 264
+ +S+ ++ + ++ RG +L +D LP + P+ + WQ
Sbjct: 216 DGESWLSRFSYAWLTPLLARGARGELRQPQDTCHLPRRLHPTYLARIFQAHWQE------ 269
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAI 323
L +A+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L +G + A+
Sbjct: 270 -GVRLWKALYKAFGRHYLALGLLKLVGTMLGFSGPLLLSLLVGFLEEGQEPLSNGLLYAL 328
Query: 324 ALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 383
L +IL + QY + ++ I+Y+K L +L R + GE +
Sbjct: 329 GLAGGAILGAVLQNQYGYEIRKVTLQARGAVLNILYRKAL--QLGPRRPPA-GEALNLLG 385
Query: 384 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 443
D++R +N A SFH+AW LP Q+ + LYLL+ QV AFV GL + +LL+PVNK IA I
Sbjct: 386 TDSERLLNFAGSFHEAWGLPLQLAITLYLLHQQVGVAFVGGLILALLLVPVNKVIATRIM 445
Query: 444 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503
+ ++M++ KD R++ E+L+ +R +K +GWEQ + + R+ E+ L KYLDA
Sbjct: 446 ASNQEMLQHKDARVKLMTELLSGVRVIKFFGWEQALGARVEACRAQELGRLRVIKYLDAA 505
Query: 504 CVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAF 563
CV+ WA P + S+ F + LMGHQL A VFT LAL LI PLN+FPWVINGL++A
Sbjct: 506 CVYLWAALPVVISIVIFITYVLMGHQLTATKVFTALALVRLLILPLNNFPWVINGLLEAK 565
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXXXX 623
+S+ R+ RFL + ++ + + P+ S L + +A SW
Sbjct: 566 VSLDRIQRFLDLPNHSPQVYYSPDPPTEPSTALE----------LHEALFSW---DPVGT 612
Query: 624 XXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---SIAYVPQV 680
L + KG LV ++G+VG GKSSLL ++ GE+ G + G Q
Sbjct: 613 SQEIFINHLEVKKGVLVGIVGKVGCGKSSLLAAVAGELHRLRGRVAVWGLSKGFGLATQE 672
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXX 740
PWI TIRDNILFGK +D Q Y E ++AC L D+ ++ GD +GEKGV LSGGQ
Sbjct: 673 PWIQFATIRDNILFGKTFDAQLYKEVIEACALTDDLHILPAGDQTEVGEKGVTLSGGQRA 732
Query: 741 XXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAA 800
+Y ++Y+LDD L+AVDA VA +L I+G + TR+LCTH + + A
Sbjct: 733 RIALARAIYQEKELYLLDDPLAAVDADVASHLLHRCILGV-LSHTTRLLCTHRTEYLEKA 791
Query: 801 DMVVVMDKGQVKWIGSSADL 820
D+V++M+ G++ G +++
Sbjct: 792 DLVLLMEAGRLLRAGPPSEI 811
|
|
| FB|FBgn0032018 CG7806 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1292 (459.9 bits), Expect = 1.5e-192, Sum P(2) = 1.5e-192
Identities = 341/987 (34%), Positives = 513/987 (51%)
Query: 216 FKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKL-LSCWQAQRSCNCTNPSLVRAI 273
F + ++ +GV +L EDL LP ++ + KL L+ Q+Q SL RA+
Sbjct: 238 FHWVQPLILKGVAGKLRKIEDLFDLPDALNITRLSEKLHLALSQSQ--------SLWRAL 289
Query: 274 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIALGL--TSI 330
+G + +G+L+++ D GFAGPLLL L++ H D V ALGL +++
Sbjct: 290 HRCFGVEFYLIGILRLIADLSGFAGPLLLGGLLR-----QDHADPNQVYYYALGLFGSTL 344
Query: 331 LKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTV 390
L + T + + ++ IY+K L R + S+ ++ MS DTDR V
Sbjct: 345 LSAVCATHFDWRMAMVSMKMRVGVVNSIYRKALEARGLKESK---PDLLNLMSTDTDRIV 401
Query: 391 NLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMM 450
N SFH WS+PF++ LYLLY Q+ AF++G+ LLIP+N+W+A I + +M
Sbjct: 402 NSCISFHFFWSIPFKLFTTLYLLYLQLGAAFLAGVIFAALLIPINRWLAKRIGIFSSGLM 461
Query: 451 KQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWAT 510
KD R+ T E + + +K+ WE IF + + R E++ LS RKYLDA CV+FWAT
Sbjct: 462 TAKDARLSATTETMQGAKQIKINAWEDIFITKIRGLRQEELRFLSKRKYLDAMCVYFWAT 521
Query: 511 TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLT 570
TP L L TFG+ LMG+ L A+ +T +AL LI PLN+FPWV+NGLI+A++SI+R+
Sbjct: 522 TPVLMCLLTFGVSVLMGNPLIASTTYTSVALLYMLIGPLNAFPWVLNGLIEAWVSIKRVQ 581
Query: 571 RFLGCSEYKHELEQAANSPSYISNGLSNFNSKDM--AVIMQDATCSWYCXXXXXXXXXX- 627
+ + + +G + D A ++Q C+ +C
Sbjct: 582 QLMDVPNLDYSSYYNPIMRGSGGSGAGDDAPLDAPKASVLQ-MKCASFCHDSDEQTSPTP 640
Query: 628 ---XXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGSIAYVPQVP 681
++ + G LV + G VG GKSS L++I+ + T G + + YVPQ P
Sbjct: 641 FRMKDINVDIKAGQLVCIEGPVGGGKSSFLSAIVANLQCTDGEVCVQELTTGFGYVPQSP 700
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXX 741
W+ GTIRDNI++G +D Q Y L AC L+ D+ ++ GGD+ +GE G LSGGQ
Sbjct: 701 WLQRGTIRDNIVWGAQFDEQWYKTVLHACALEEDLQIL-GGDLVGVGENGRTLSGGQRAR 759
Query: 742 XXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISAA 800
VY +Y+LDDVLS++DA VAR I+ + I+ +L+ KTRI+ T N+Q A
Sbjct: 760 VALARAVYQDKKVYLLDDVLSSLDAHVARHIIKHCIL--RLLKHKTRIVVTRNIQLFFHA 817
Query: 801 DMVVVMDKGQV---KWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQIL 857
+ ++ + GQ+ +++ S +L++ + D Q+ +R + + Q
Sbjct: 818 NQILQVKDGQLLPSEYMTQSIELSLD--------EDADDE---QEPTVRRRSVELSNQY- 865
Query: 858 LQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNG 917
+K + S+ ++E E R+ G + V+ Y K + + LS +LMQ +RN
Sbjct: 866 -DKKSLDSL------LLE-ELREYGHLSGNVFTCYWKAVTSPLAFTVLLSVVLMQLTRNL 917
Query: 918 NDLWLSYWV----------DT---------TGSSQTK--YSTSFYLVVLCIFCMFNSFLT 956
+D WL+YWV DT T ++T+ ++T FYL + + NS +T
Sbjct: 918 SDAWLAYWVTETTLDPHKNDTSLDHILMRPTVGNETESGHTTKFYLSIFTAIAVSNSLVT 977
Query: 957 LVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1016
L RAF FA+ ++AA+ +H LL K++ A FFD T GRILNRFSSD +DDSLPFI
Sbjct: 978 LARAFLFAYAGIKAAIFMHEKLLKKVMFAKFNFFDITSVGRILNRFSSDTNTVDDSLPFI 1037
Query: 1017 LNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFYRSTSRELRRLDSVSRSP 1076
LNILLA GL+G IY LQ YR SR+++RL S + SP
Sbjct: 1038 LNILLAQLAGLVGALCVSLYAMPWLGLVIIPMVPIYLSLQQRYRHASRDIKRLSSNAMSP 1097
Query: 1077 IYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQV-GLAL 1135
+Y FTETL G +TIR+ ++ F F+ + + ++ A WL+LRLQ+ G L
Sbjct: 1098 LYTHFTETLQGLTTIRSMRASPRFQRDFQVKLEESIKAQLTQSAAQQWLALRLQLLGTLL 1157
Query: 1136 SYAAPIVSLLGNFLSSFTETEKEMVSL 1162
A LL +S T T +V L
Sbjct: 1158 VGGA---GLLAAITASHT-TNPGLVGL 1180
|
|
| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 850 (304.3 bits), Expect = 5.3e-179, Sum P(5) = 5.3e-179
Identities = 215/611 (35%), Positives = 327/611 (53%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHX- 343
LLKVV D + F P LL LI F +L GY+ +I L + ++++SF QY F
Sbjct: 326 LLKVVYDILTFLNPQLLKLLIAFANDRGIYLWTGYLYSILLFVVALIQSFC-LQYYFQLC 384
Query: 344 XXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLP 403
IM +Y+K L V R +++ GE MSVD + +++ N H WS
Sbjct: 385 FMLGMKVRTTIMASVYKKALTVSNRARKQYTIGETVNLMSVDAQKLMDVTNFIHLLWSNV 444
Query: 404 FQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEI 463
QI +A+Y L+ ++ + ++G+ + ++LIP+N +A K MK KD R++ EI
Sbjct: 445 LQIALAIYFLWAELGPSVLAGVGVMVILIPINGVLATRNRAIQVKNMKNKDSRLKIMNEI 504
Query: 464 LTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF 523
L+ I+ LK + WE F + + R E+++L L + +F TP L S+ TF ++
Sbjct: 505 LSGIKILKYFAWEPSFQNQVHNLRKKELRNLLRFGQLQSAIMFLLYLTPVLVSVITFSVY 564
Query: 524 ALM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581
L+ + LDA FT + LFN L P++ P +I+ ++ A +S RL ++LG +
Sbjct: 565 VLVDSSNVLDAQKAFTSITLFNILRFPMSMLPMLISSMLQASVSTERLEKYLGGDD---- 620
Query: 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXXXXXXXXXXXSLCLPKGSLVA 641
L+ +A I + + NS D AV +A+ +W +L + G LVA
Sbjct: 621 LDTSA-----IRH---DCNSADKAVQFSEASFTW----DHDLGVTIQDVNLDIMPGQLVA 668
Query: 642 VIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQ 701
V+G VGSGKSSL++++LGEM HG I GS+AYVPQ WI +GTI++NILFG D +
Sbjct: 669 VVGTVGSGKSSLMSAMLGEMENVHGHITVKGSVAYVPQQSWIQNGTIKENILFGSELDEK 728
Query: 702 SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVL 761
Y L+AC L D+ ++ GGDMA IGEKG+NLSGGQ Y SDIY+LDD L
Sbjct: 729 KYQRVLEACALLPDLEVLPGGDMAEIGEKGINLSGGQKQRISLARATYQNSDIYILDDPL 788
Query: 762 SAVDAQVARWILSNAIMGPH-MLQ-KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSAD 819
SAVDA V + I N ++GP+ +L+ KTRIL TH++ + D +VV+ G + GS +
Sbjct: 789 SAVDAHVGKHIF-NKVLGPNGLLKGKTRILVTHSIHFLPQVDEIVVVGNGTIMEKGSYST 847
Query: 820 LAVSLYSGFWSTNEFDTSLHMQ--KQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVE 877
L + G ++ N T + + E N S + L V SV + +++ +
Sbjct: 848 LLAN--KGLFAKN-LKTFVKQTGPEDEATVNEDSEDDDCGL----VPSVEEIPEDVASLS 900
Query: 878 QRKEGRVELTV 888
+KE + T+
Sbjct: 901 MKKENDLHRTL 911
|
|
| UNIPROTKB|I3L4X2 ABCC1 "Multidrug resistance-associated protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 3.8e-178, Sum P(4) = 3.8e-178
Identities = 237/706 (33%), Positives = 357/706 (50%)
Query: 266 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQQGSG-HLDGYVLAI 323
NPSL + + +G PY + K ++D + F+GP +L LIKF+ GY +
Sbjct: 209 NPSLFKVLYKTFG-PYFLMSFFFKAIHDLMMFSGPQILKLLIKFVNDTKAPDWQGYFYTV 267
Query: 324 ALGLTSILKSFFDTQYSFHX-XXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFM 382
L +T+ L++ QY FH ++ +Y+K L + + R + GEI M
Sbjct: 268 LLFVTACLQTLVLHQY-FHICFVSGMRIKTAVIGAVYRKALVITNSARKSSTVGEIVNLM 326
Query: 383 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 442
SVD R ++LA + WS P Q+ +ALYLL+ + + ++G+A+ +L++PVN +A
Sbjct: 327 SVDAQRFMDLATYINMIWSAPLQVILALYLLWLNLGPSVLAGVAVMVLMVPVNAVMAMKT 386
Query: 443 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 502
MK KD RI+ EIL I+ LK+Y WE F ++ R E+K L YL A
Sbjct: 387 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAYLSA 446
Query: 503 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 560
F W TP L +L TF ++ + LDA F LALFN L PLN P VI+ ++
Sbjct: 447 VGTFTWVCTPFLVALCTFAVYVTIDENNILDAQTAFVSLALFNILRFPLNILPMVISSIV 506
Query: 561 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXX 620
A +S++RL FL E E + P + +G NS + +++AT +W
Sbjct: 507 QASVSLKRLRIFLSHEEL--EPDSIERRP--VKDG-GGTNS----ITVRNATFTW----A 553
Query: 621 XXXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680
+ +P+G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 554 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQ 613
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXX 740
WI + ++R+NILFG + Y ++AC L D+ ++ GD IGEKGVNLSGGQ
Sbjct: 614 AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 673
Query: 741 XXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQ-KTRILCTHNVQAIS 798
VY +DIY+ DD LSAVDA V + I N I GP ML+ KTRIL TH++ +
Sbjct: 674 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI-GPKGMLKNKTRILVTHSMSYLP 732
Query: 799 AADMVVVMDKGQVKWIGSSADLAV--SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQI 856
D+++VM G++ +GS +L ++ F T T Q+Q+ N S+ +
Sbjct: 733 QVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYA-STE---QEQDAEENGSTVMDE- 787
Query: 857 LLQEKDVVSVSDDAQEIIEVEQR-----KEGRVELTVYKNYAKFSGWFITLVICLSAILM 911
+E V VS +E ++E G+ + + +SG I+ +A L
Sbjct: 788 --EEAGVTGVSGPGKEAKQMENGMLVTDSAGKQLQRQLSSSSSYSG-DISRHHNSTAELQ 844
Query: 912 QASRNGNDLWLSYWVDTTGSSQTKYSTSF-YLVVLCIFCMFNS-FL 955
+A + W D + Q K S + Y+ + +F F S FL
Sbjct: 845 KAEAKKEETWKLMEADKAQTGQVKLSVYWDYMKAIGLFISFLSIFL 890
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| TAIR|locus:2028155 ABCC11 "ATP-binding cassette C11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1071 (382.1 bits), Expect = 1.5e-177, Sum P(3) = 1.5e-177
Identities = 272/922 (29%), Positives = 454/922 (49%)
Query: 216 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICC 275
F + +M G K + D+ L T + CW + P L+RA+
Sbjct: 240 FSWMTPLMQLGYRKPITERDVWQLDQWDQTETLIKRFQRCWTEES--RRPKPWLLRALNN 297
Query: 276 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFF 335
+ G + G+ KV +D F GP++L+ +++ + +G GYV A +
Sbjct: 298 SLGRRFWLGGIFKVGHDLSQFVGPVILSHILQSMIEGDPAWVGYVYAFLIFFGVTFGVLC 357
Query: 336 DTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 395
+QY H ++ I+ K L + R F+ G++ ++ D + +A
Sbjct: 358 QSQYFQHVGRVGFRLRSTLVAAIFHKSLRLTNKARKNFASGKVTNMITTDANALQLIAEQ 417
Query: 396 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 455
H WS PF+I V++ LLY Q+ A + G I LLIP I + T++ ++ D+
Sbjct: 418 LHGLWSAPFRIIVSMVLLYQQLGVASIFGSLILFLLIPFQTLIVRKMRKLTKEGLQWTDK 477
Query: 456 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLF 515
R+ EIL + +K Y WE+ F S + R+ E+ + L A+ F +TP +
Sbjct: 478 RVGIIYEILASMDIVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSTPVVV 537
Query: 516 SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 575
+L +FG++ L+G L A FT L+LF L SPL++ P +I+ ++A +S++R+ L
Sbjct: 538 TLVSFGVYVLLGGDLTPARAFTSLSLFAVLRSPLSTLPNLISQAVNANVSLQRIEELL-L 596
Query: 576 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXXXXXXXXXXXSLCLP 635
SE E A N P + G A+ +++ SW +L +P
Sbjct: 597 SE---ERILAQNPP--LQPGAP-------AISIKNGYFSW---DSKTSKPTLSDINLEIP 641
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAYVPQVPWILSGTIRDNILF 694
GSLVA++G G GK+SL++++LGE+ S+ GS+AYVPQV WI + T+R+NILF
Sbjct: 642 VGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVDIRGSVAYVPQVSWIFNATLRENILF 701
Query: 695 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSDI 754
G +++ + Y + L D+ L G D IGE+GVN+SGGQ VY SDI
Sbjct: 702 GSDFESERYWRAIDVTALQHDLDLFPGRDRTEIGERGVNISGGQKQRVSMARAVYSNSDI 761
Query: 755 YMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWI 814
Y+ DD SA+DA VA + + + + KTR+L T+ + + D ++++ +G +K
Sbjct: 762 YIFDDPFSALDAHVAHQVFDSCVKH-ELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEE 820
Query: 815 GSSADLAVS--LYSGFW-STNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDA- 870
G+ A+L+ S L+ + + D + + + + I + E+ + S+
Sbjct: 821 GNFAELSKSGTLFKKLMENAGKMDATQEVNTNDENISKLGPTVTIDVSERSLGSIQQGKW 880
Query: 871 --QEIIEVEQRKEGRVELTVYKNYAK-FSGWFITLVICLSAILMQASRNGNDLWLSYWVD 927
+++ E+R+ G + V Y K G ++ +++ + + + R + WLS W D
Sbjct: 881 GRSMLVKQEERETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTEVLRVLSSTWLSIWTD 940
Query: 928 TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987
S+ YS FY+VV + +T +F SL AA ++H+ +L I+ AP+
Sbjct: 941 Q--STPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPM 998
Query: 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXX 1047
LFF+ P GR++NRFS D+ ID ++ ++N+ + LL
Sbjct: 999 LFFETNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGIVSTISLWAIMP 1058
Query: 1048 XXXIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1107
++ +Y+STSRE+RRLDSV+RSPIYA F E LNG S+IRA+K+ D MAK
Sbjct: 1059 LLILFYATYIYYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYKAYDR-MAKINGK 1117
Query: 1108 VVLYQ-RTSYSELTASLWLSLR 1128
+ R + + +++ WL++R
Sbjct: 1118 SMDNNIRFTLASTSSNRWLTIR 1139
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SKX0 | AB13C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6391 | 0.9495 | 0.9617 | yes | no |
| Q54U44 | ABCCC_DICDI | No assigned EC number | 0.3303 | 0.8088 | 0.8730 | yes | no |
| Q8R4P9 | MRP7_MOUSE | No assigned EC number | 0.3705 | 0.8620 | 0.8201 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | ATMRP11 | ATMRP11; ATPase, coupled to transmembrane movement of substances; member of MRP subfamily ; Pump for glutathione S-conjugates (By similarity) (1251 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT4G08455 | BTB/POZ domain-containing protein; BTB/POZ domain-containing protein; FUNCTIONS IN- protein bin [...] (243 aa) | • | 0.821 | |||||||
 | CYP705A32 | CYP705A32; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding; m [...] (526 aa) | • | 0.786 | |||||||
 | AT1G12570 | glucose-methanol-choline (GMC) oxidoreductase family protein; glucose-methanol-choline (GMC) ox [...] (572 aa) | • | 0.716 | |||||||
 | HAG2 | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone ac [...] (467 aa) | • | 0.677 | |||||||
 | AT1G77540 | H3/H4 histone acetyltransferase; Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT [...] (114 aa) | • | 0.655 | |||||||
 | AT2G20270 | glutaredoxin family protein; glutaredoxin family protein; FUNCTIONS IN- electron carrier activi [...] (179 aa) | • | 0.599 | |||||||
 | ABC1At | ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter; Encodes an ABC1-like protein, mem [...] (623 aa) | • | 0.597 | |||||||
 | EIF3K | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K); translation initiation factor; Encodes ini [...] (226 aa) | • | 0.510 | |||||||
 | PDR13 | PDR13; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; PDR13; FUNCTIONS IN [...] (1390 aa) | • | • | 0.451 | ||||||
 | AT5G44410 | FAD-binding domain-containing protein; FAD-binding domain-containing protein; FUNCTIONS IN- ele [...] (535 aa) | • | 0.435 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1428 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-169 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-104 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-102 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-89 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-72 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-71 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-67 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-66 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-66 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-63 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-62 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-60 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-58 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-57 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-55 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-54 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-53 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-52 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-52 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-51 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-51 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-50 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-50 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-47 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 5e-47 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-47 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-46 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-45 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-45 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-44 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-43 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-43 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-42 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-42 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-41 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-40 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-40 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-38 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-37 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-36 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-36 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-35 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-35 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-35 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-35 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-34 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-34 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-34 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-33 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-33 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-32 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-32 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-31 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-31 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-30 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-30 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-29 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-29 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-29 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-28 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-28 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-28 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-28 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-28 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-28 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-27 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-26 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-26 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-26 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-26 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-26 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-25 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-25 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-25 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-25 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-25 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-25 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-25 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 7e-25 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-25 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-24 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-24 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-24 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-24 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-24 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-24 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-24 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-23 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-23 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-23 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-23 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-23 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 8e-23 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 8e-23 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-23 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-22 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-22 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-22 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-22 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-22 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-22 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-22 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-22 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-21 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-21 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-21 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-21 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-21 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-21 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-21 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 5e-21 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 6e-21 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-21 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-20 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-20 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-20 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-20 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-19 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-19 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-19 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-19 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-19 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-19 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-19 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 8e-19 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-18 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-18 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-18 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-18 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-18 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-18 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-18 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-18 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-18 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-17 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-17 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-17 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-17 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-17 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-17 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-17 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-17 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-16 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-16 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-16 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-16 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-16 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-16 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-16 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-16 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-16 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-16 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-16 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-16 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-16 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-16 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 9e-16 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-15 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-15 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-15 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-15 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-15 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-15 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-15 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-14 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-14 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-14 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-14 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-14 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-14 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-14 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-14 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-14 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-14 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-14 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-14 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-14 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 8e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 9e-14 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 9e-14 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-14 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 9e-14 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-13 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-13 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-13 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-13 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-13 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 6e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-13 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-13 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 7e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-13 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-13 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 9e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-12 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-12 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-12 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-12 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-12 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-12 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-12 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 9e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 9e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-11 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 7e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 8e-11 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 9e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-10 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-10 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-10 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-10 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-10 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-10 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-10 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 9e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-10 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-09 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-09 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-09 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-09 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-09 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 5e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-09 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 9e-09 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 9e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-08 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-08 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 8e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 9e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-07 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-07 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-07 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 9e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 9e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 5e-04 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 5e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 5e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 7e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 8e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 8e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.001 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.001 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.001 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 0.001 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.001 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.001 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 0.001 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.002 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.002 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 0.002 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.003 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.003 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.003 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 787 bits (2033), Expect = 0.0
Identities = 422/1221 (34%), Positives = 661/1221 (54%), Gaps = 89/1221 (7%)
Query: 266 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG-HLDGYVLAIA 324
PSL + + +G ++ K ++D + F GP +L+ LI+F+ GY
Sbjct: 304 KPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGL 363
Query: 325 LGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 383
L + + L++ QY FH+ + +++++++M +Y+K L + + R + GEI MS
Sbjct: 364 LFVCACLQTLILHQY-FHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMS 422
Query: 384 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 443
VD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ +L++P+N +A
Sbjct: 423 VDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTK 482
Query: 444 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503
MK KD RI+ EIL I+ LK+Y WE F + R E+K L YL A
Sbjct: 483 TYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV 542
Query: 504 CVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLID 561
F W TP L +L TF ++ + LDA F LALFN L PLN P VI+ ++
Sbjct: 543 GTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQ 602
Query: 562 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 621
A +S++RL FL ELE + I G N ++ + +AT +W
Sbjct: 603 ASVSLKRLRIFLS----HEELEPDSIERRTIKPGEGN------SITVHNATFTW----AR 648
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
+ LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM G +H GS+AYVPQ
Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQA 708
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + ++R+NILFGK + + Y + L+AC L D+ ++ GD IGEKGVNLSGGQ+ R
Sbjct: 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISAA 800
++LARAVY +DIY+ DD LSAVDA V + I + I +L+ KTRIL TH + +
Sbjct: 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828
Query: 801 DMVVVMDKGQVKWIGSSADLAV--SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILL 858
D+++VM G++ +GS +L ++ F T D + S K+ L
Sbjct: 829 DVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKL 888
Query: 859 QEKDVVSVSDDAQE-------------------------------------IIEVEQRKE 881
E + + V+D + ++E ++ +
Sbjct: 889 IE-NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQT 947
Query: 882 GRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFY 941
G+VEL+VY +Y K G FIT + + S ++ WLS W D + T+ +TS
Sbjct: 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR 1007
Query: 942 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 1001
L V + F + + + G ++A+ +H LL + +P+ FF++TP G ++NR
Sbjct: 1008 LSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNR 1067
Query: 1002 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061
FS +L +D +P ++ + + + ++G +V+ +++ P +Y +Q FY +
Sbjct: 1068 FSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVA 1127
Query: 1062 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121
+SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y + A
Sbjct: 1128 SSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1187
Query: 1122 SLWLSLRLQ-------------------------VGLALSYAAPIVSLLGNFLSSFTETE 1156
+ WL++RL+ VGL++SY+ + L + +E E
Sbjct: 1188 NRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEME 1247
Query: 1157 KEMVSLERVLEYMDVPQEELCGYQSLSP--DWPFQGLIEFQNVTMRYKPSLPAALHDINF 1214
+V++ER+ EY + +E Q +P WP +G +EF+N +RY+ L L IN
Sbjct: 1248 TNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINV 1307
Query: 1215 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1274
TI GG +VGIVGRTGAGKSS+ LFR+ G+I++DGLNI + DLR + ++PQ
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367
Query: 1275 SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQR 1332
P LF GSLR NLDPF D ++W LE H+K V A+ L+ E G + SVGQR
Sbjct: 1368 DPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427
Query: 1333 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMD 1392
QL+CLARALL+ +K+L LDE TA VD +T +++Q+ I ++ + TV+TIAHR++T+++
Sbjct: 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYT 1487
Query: 1393 EILILDHGHLVEQGNPQTLLQ 1413
+++LD G + E G P LLQ
Sbjct: 1488 RVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 776 bits (2007), Expect = 0.0
Identities = 424/1257 (33%), Positives = 684/1257 (54%), Gaps = 68/1257 (5%)
Query: 216 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICC 275
F + +M G + L +D+ L T T + CW + P L+RA+
Sbjct: 240 FGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKK--PKPWLLRALNN 297
Query: 276 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFF 335
+ G + G K+ ND F GPLLLN L++ +Q G GY+ A ++ + +L
Sbjct: 298 SLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLC 357
Query: 336 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 395
+ QY ++ ++ +LRS+++ +++K L + R +F+ G+I M+ D + +
Sbjct: 358 EAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ 417
Query: 396 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 455
H WS PF+I +A+ LLY Q+ A + G + +L+ P+ +I + + T++ +++ D+
Sbjct: 418 LHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477
Query: 456 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLF 515
RI E+L + T+K Y WE F S + R E+ + L A+ F + P L
Sbjct: 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLV 537
Query: 516 SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 575
++ +FG+F L+G L A FT L+LF L PL P +I ++A +S++RL L
Sbjct: 538 TVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELL-- 595
Query: 576 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 635
E N P + GL A+ +++ SW E L+ ++L +P
Sbjct: 596 --LAEERVLLPNPP--LEPGLP-------AISIKNGYFSWDSKAERP---TLSNINLDVP 641
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEM-MLTHGSIHASGSIAYVPQVPWILSGTIRDNILF 694
GSLVA++G G GK+SL++++LGE+ + S+ G++AYVPQV WI + T+RDNILF
Sbjct: 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701
Query: 695 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDI 754
G +DP+ Y + L D+ L+ GGD+ IGE+GVN+SGGQ+ R+++ARAVY SD+
Sbjct: 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761
Query: 755 YMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWI 814
Y+ DD LSA+DA V R + I + KTR+L T+ + +S D ++++ +G +K
Sbjct: 762 YIFDDPLSALDAHVGRQVFDKCIKD-ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820
Query: 815 GSSADLAVS------LYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVS--- 865
G+ +L+ + L E+ ++ + ++ AN +KD S
Sbjct: 821 GTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKK 880
Query: 866 VSDDAQEIIEVEQRKEGRVELTVYKNY-AKFSGWFITLVICLSAILMQASRNGNDLWLSY 924
+ +I+ E+R+ G V V + Y G ++ +++ L +L + R + WLS
Sbjct: 881 SKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSE 940
Query: 925 WVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984
W D + FY ++ + +TL+ ++ SL AA ++H+ +L I+
Sbjct: 941 WTDQGTPKT--HGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILR 998
Query: 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1044
AP+ FF P GRI+NRF+ DL ID ++ +N+ L LL V++ V L
Sbjct: 999 APMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWA 1058
Query: 1045 LVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1104
++P ++ +Y+ST+RE++RLDS++RSP+YA F E LNG STIRA+K+ D MA+
Sbjct: 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MAEI 1117
Query: 1105 KEHVVLYQ-RTSYSELTASLWLSLRL------------------------------QVGL 1133
+ R + ++++ WL++RL +GL
Sbjct: 1118 NGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGL 1177
Query: 1134 ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS--LSPDWPFQGL 1191
LSYA I SLL L + E + ++ERV Y+D+P E ++ P WP G
Sbjct: 1178 LLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGS 1237
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I+F++V +RY+P LP LH ++F I +VGIVGRTGAGKSS+LNALFR+ + G+IL
Sbjct: 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRIL 1297
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
+DG +I + DLR ++PQ+P LF G++R NLDPF+ ++D +W LE+ H+K+ +
Sbjct: 1298 IDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVI 1357
Query: 1312 E--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
++GL+ V E+G +FSVGQRQL+ LARALL+ SK+L LDE TA VD +T +++Q I
Sbjct: 1358 RRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1417
Query: 1370 SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426
E K T++ IAHR++T+++ D IL+LD G +VE P+ LL +E S FS V+++
Sbjct: 1418 REEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 721 bits (1863), Expect = 0.0
Identities = 423/1270 (33%), Positives = 697/1270 (54%), Gaps = 79/1270 (6%)
Query: 207 NQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW--QAQRSCNC 264
S + + F + +M G K + +D+ L T + CW +++R
Sbjct: 231 YASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRP--- 287
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIA 324
P L+RA+ + G + G+ K+ +D F GP++L+ L++ +Q+G GYV A
Sbjct: 288 -KPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFL 346
Query: 325 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 384
+ ++QY ++ ++ +LRS+++ I+ K L + R F+ G++ ++
Sbjct: 347 IFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITT 406
Query: 385 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
D + +A H WS PF+I V++ LLY Q+ A + G I LLIP+ I +
Sbjct: 407 DANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRK 466
Query: 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504
T++ ++ D+R+ EIL + T+K Y WE+ F S + R+ E+ + L A+
Sbjct: 467 LTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFN 526
Query: 505 VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFI 564
F + P + +L +FG+F L+G L A FT L+LF L SPLN P +++ +++A +
Sbjct: 527 SFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANV 586
Query: 565 SIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQN 624
S++R+ L E A N P + G A+ +++ SW + +
Sbjct: 587 SLQRIEELL----LSEERILAQNPP--LQPGAP-------AISIKNGYFSW---DSKTSK 630
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASGSIAYVPQVP 681
L+ ++L +P GSLVA++G G GK+SL++++LGE L+H S+ GS+AYVPQV
Sbjct: 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE--LSHAETSSVVIRGSVAYVPQVS 688
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + T+R+NILFG +++ + Y + L D+ L+ G D+ IGE+GVN+SGGQ+ R
Sbjct: 689 WIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR 748
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAAD 801
+++ARAVY SDIY+ DD LSA+DA VA + ++ M + KTR+L T+ + + D
Sbjct: 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVF-DSCMKDELKGKTRVLVTNQLHFLPLMD 807
Query: 802 MVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ-KQEMRTNASSANK-----Q 855
++++ +G +K G+ A+L+ SG + + M QE+ TN + K
Sbjct: 808 RIILVSEGMIKEEGTFAELS---KSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVT 864
Query: 856 ILLQEKDVVSVSDDAQE---IIEVEQRKEGRVELTVYKNYAK-FSGWFITLVICLSAILM 911
I + E+++ S + +++ E+R+ G + V Y K G ++ +++ + +
Sbjct: 865 IDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTT 924
Query: 912 QASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAA 971
+ R + WLS W D S+ YS FY+VV + +T +F SL AA
Sbjct: 925 EVLRVSSSTWLSIWTDQ--STPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAA 982
Query: 972 VKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIA 1031
++H+ +L I+ AP+LFF P GR++NRFS D+ ID ++ ++N+ + LL
Sbjct: 983 KRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTF 1042
Query: 1032 VVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTI 1091
++ V L ++P ++ +Y+STSRE+RRLDSV+RSPIYA F E LNG S+I
Sbjct: 1043 ALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSI 1102
Query: 1092 RAFKSEDYFMAKFKEHVVLYQ-RTSYSELTASLWLSLRLQ-------------------- 1130
RA+K+ D MAK + R + + +++ WL++RL+
Sbjct: 1103 RAYKAYDR-MAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGN 1161
Query: 1131 ----------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQ 1180
+GL LSY I +LL L ++ E + S+ERV Y+D+P E +
Sbjct: 1162 AENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIE 1221
Query: 1181 SLSP--DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1238
+ P WP +G I+F++V +RY+P LP LH ++F + +VG+VGRTGAGKSS+LNA
Sbjct: 1222 NNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNA 1281
Query: 1239 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1298
LFR+ + G+I++D ++ + DLR +++PQSP LF G++R N+DPF ++D +
Sbjct: 1282 LFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADL 1341
Query: 1299 WSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
W LE+ H+K+ ++ GL+ V E G +FSVGQRQL+ LARALL+ SK+L LDE TA+
Sbjct: 1342 WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATAS 1401
Query: 1357 VDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1416
VD +T S++Q I E K T++ IAHR++T+++ D+IL+L G ++E +PQ LL +
Sbjct: 1402 VDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDT 1461
Query: 1417 SVFSSFVRAS 1426
S F V ++
Sbjct: 1462 SAFFRMVHST 1471
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 547 bits (1411), Expect = e-169
Identities = 302/886 (34%), Positives = 460/886 (51%), Gaps = 89/886 (10%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ 679
E E V+L VS+ +P+G L V+G GSGKS+LL S+L + ++ G + A SIAYVPQ
Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQ 728
Query: 680 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739
WI++ T+R NILF D ++ ++ L+ D++ + GG IGEKGVNLSGGQ+
Sbjct: 729 QAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
AR++LARAVY D+Y+LDD LSA+DA V ++ +G + KTR+L TH V +
Sbjct: 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATHQVHVVPR 847
Query: 800 ADMVVVMDKGQVKWIGSSADLA-VSLYSGFW-------------STNEFDTSLHMQKQEM 845
AD VV + G+V++ GSSAD SLY+ + E +
Sbjct: 848 ADYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAV 907
Query: 846 RTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG----WFIT 901
A ++ + D ++ A ++ E++ G V + Y Y +F G
Sbjct: 908 DHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFV 967
Query: 902 LVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAF 961
L L+ S + +WLS W +T S K S + YL V + + ++ F
Sbjct: 968 LATFAVTELVTVS---SGVWLSMW--STRS--FKLSAATYLYVY-LGIVLLGTFSVPLRF 1019
Query: 962 SFAFGSLR-AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNIL 1020
++ ++R + +H LL + + FFD TP GRILNRFS D+ ++D++LP L
Sbjct: 1020 FLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYL 1079
Query: 1021 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYAS 1080
L + +V S Q F L+ LVP ++Y +L FY S +RE+RR+ SV++SP++
Sbjct: 1080 LQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTL 1139
Query: 1081 FTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ---------- 1130
E L GS+TI A+ M + + + SY E A+ WL +R++
Sbjct: 1140 LEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVI 1199
Query: 1131 -------------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMD- 1170
V L+L+ A + L + E +M S+ER+L Y D
Sbjct: 1200 ALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDE 1259
Query: 1171 VPQEEL--------------------CGYQSLSPDWPFQ--------GLIEFQNVTMRYK 1202
VP E++ G + P P G + F+ V MRY+
Sbjct: 1260 VPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYR 1319
Query: 1203 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1262
LP L ++F I +VGIVGRTG+GKS++L R+ +CGG+I V+G I +
Sbjct: 1320 EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL 1379
Query: 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFV 1320
R+LR +F+++PQ P LF+G++R N+DPF ++W+ LE ++E V E+ G+++ V
Sbjct: 1380 RELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRV 1439
Query: 1321 KESGISFSVGQRQLICLARALLK-SSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1379
E G ++SVGQRQL+C+ARALLK S + +DE TAN+D +Q + S TVI
Sbjct: 1440 LEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVI 1499
Query: 1380 TIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425
TIAHR+ TV D+I+++DHG + E G+P+ L+ + S+F S V A
Sbjct: 1500 TIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 330 bits (850), Expect = e-104
Identities = 115/221 (52%), Positives = 162/221 (73%), Gaps = 2/221 (0%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
G IEF+NV++RY+P+LP L +I+F+I+ G +VGIVGRTG+GKSS+L ALFRL + G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
IL+DG++I + DLR R +++PQ P LF G++R NLDPF D ++W LE+ +KE
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1310 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
VE++ GL+T V+E G + SVGQRQL+CLARALL+ SK+L LDE TA+VD +T +++Q
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1368 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1408
I K TV+TIAHR+ T+++ D IL+LD G +VE +P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 324 bits (834), Expect = e-102
Identities = 107/205 (52%), Positives = 149/205 (72%), Gaps = 1/205 (0%)
Query: 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665
+ ++DA+ +W + E+E + L ++L +PKG LVA++G VGSGKSSLL+++LGE+
Sbjct: 1 ISVEDASFTW-DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS 59
Query: 666 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
GS+ GSIAYV Q PWI +GTIR+NILFGK +D + Y + +KAC L+ D+ ++ GD+
Sbjct: 60 GSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
IGEKG+NLSGGQ+ R++LARAVY +DIY+LDD LSAVDA V R I N I+G + K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 786 TRILCTHNVQAISAADMVVVMDKGQ 810
TRIL TH +Q + AD +VV+D G+
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 301 bits (772), Expect = 3e-89
Identities = 139/520 (26%), Positives = 255/520 (49%), Gaps = 41/520 (7%)
Query: 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 1000
L++L + + L ++++ + + + L K++ P+ FFD+ G +++
Sbjct: 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLIS 113
Query: 1001 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPFWFIYSKLQF 1057
R ++D+ + + + +L ++ + + L+G V+L + LLL++P + +
Sbjct: 114 RLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL---VLS 170
Query: 1058 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYS 1117
SR+L R + + A E+L+G I+AF +ED + +F+E +R +
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 1118 E------------------LTASLWLSLRL---------QVGLALSYAAPIVSLLGNFLS 1150
L L L + + Y +++ +
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGE 290
Query: 1151 SFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALH 1210
+ ++ + ER+ E +D E P G IEF+NV+ Y P L
Sbjct: 291 VVSLLQRASAAAERLFELLDEEPEVE---DPPDPLKDTIGSIEFENVSFSYPGKKPV-LK 346
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270
DI+F+IE G +V IVG +G+GKS+++ L RL G+IL+DG++I + + LR R
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406
Query: 1271 VVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1327
+V Q P LF G++R+N+ + D +I L+ + E + + G +T V E G++
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466
Query: 1328 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1387
S GQRQ + +ARALL++ +L LDE T+ +D +T +++Q+A+ KG T + IAHR+ST
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST 526
Query: 1388 VLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427
+ N D I++LD+G +VE+G + LL +++ +A
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 1e-72
Identities = 96/223 (43%), Positives = 141/223 (63%), Gaps = 16/223 (7%)
Query: 1186 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1245
WP G IE +N+++RY P LP L +++F ++ G ++GIVGRTGAGKS+++ ALFR
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1246 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1305
G+I +DG++I P+ DLR ++PQ P LF G++R NLDPF D +I+ L
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1306 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
V E G++ S GQRQL+CLARALLK +VL LDE TA++D T +++
Sbjct: 119 --------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164
Query: 1366 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1408
Q I E T++TIAHR+ T+++ D+IL++D G + E +P
Sbjct: 165 QKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 254 bits (652), Expect = 1e-71
Identities = 152/526 (28%), Positives = 250/526 (47%), Gaps = 57/526 (10%)
Query: 933 QTKYSTSFYLV-VLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 991
ST L L + +F + L L+R + A R +++ ++ P+ +F+
Sbjct: 187 DASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246
Query: 992 QTPGGRILNRFSSDLYMIDDSLP-FILNILLANFVGLLGIAVVLSY-------VQVFFLL 1043
+ G I++R +L I + L IL +++ L+ +AV+ Y V L
Sbjct: 247 KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPL 305
Query: 1044 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1103
++ Q R +R+L + + ET+ G T++A +E F ++
Sbjct: 306 NVLITLIF----QPLLRRKTRKLIEESAE----QQSFLVETIKGIETVKALAAEPRFRSQ 357
Query: 1104 FK----EHVVLYQRTSYSELTASLWLSL--------------------RLQVG------- 1132
+ + V + +T L + SL L +G
Sbjct: 358 WDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNM 417
Query: 1133 LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1192
LA + +PI L + F + + V+LER+ + +D P E+ G ++L QG I
Sbjct: 418 LAGYFISPITRLS-QLWTDFQQAK---VALERLGDILDTPPEQ-EGDKTLIHLPKLQGEI 472
Query: 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252
EF+NV+ RY P P L D++ I G +V IVGR+G+GKS++L L L G+IL+
Sbjct: 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532
Query: 1253 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK-IWSVLEKCHVKEEV 1311
DG+++ + + LR + V Q PFLF GS+R+N+ + + I + E +
Sbjct: 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFI 592
Query: 1312 EAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
E + G +T V E G + S GQRQ + LARALL K+L LDE T+ +D +T +I+ +
Sbjct: 593 ENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652
Query: 1370 SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
+G TVI IAHR+ST+ + D I++LD G +VEQG+ + LL
Sbjct: 653 LQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 1e-67
Identities = 181/647 (27%), Positives = 305/647 (47%), Gaps = 83/647 (12%)
Query: 222 VMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPY 281
++ +G ++L+ D+ +P+ +L W + + NP L+ A+ + + +
Sbjct: 23 ILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82
Query: 282 ICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-------GYVLAIALGLTSILKSF 334
+ G+L ++ PLLL ++I S Y LA+ L L I+++
Sbjct: 83 VFYGILLYFGEATKAVQPLLLGRII-----ASYDPFNAPEREIAYYLALGLCLLFIVRTL 137
Query: 335 FDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAER--SEFSDGEIQTFMSVDT---DRT 389
F L L +++R ++ ++IY+K L +L+ R + S G++ + +S + D
Sbjct: 138 LLHPAIFGLHHLGMQMRIALFSLIYKKTL--KLSSRVLDKISTGQLVSLLSNNLNKFDEG 195
Query: 390 VNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKM 449
+ LA H W P Q+ + + L++ ++ GL ILL + + +K
Sbjct: 196 LALA---HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKR 252
Query: 450 MKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509
+ ER+ T EI+ +I+++K Y WE+ + R E+K TRK A+ +F++
Sbjct: 253 AGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELK--LTRKI--AYLRYFYS 308
Query: 510 TTPTLFSLFTFGLFALMGHQLDAAM----VFT----CLALFNSLISPLNSFPWVINGLID 561
+ FS F +++ + L + +FT C+ L ++ FP I D
Sbjct: 309 SA-FFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVT---RQFPGAIQTWYD 364
Query: 562 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW------ 615
+ +I ++ FL EYK LE +N V M + T SW
Sbjct: 365 SLGAITKIQDFLCKEEYK-TLE---------------YNLTTTEVEMVNVTASWDEGIGE 408
Query: 616 ------YCNNEEEQ----------------NVVLNQVSLCLPKGSLVAVIGEVGSGKSSL 653
N +Q VL +S L KG L+AV G GSGKSSL
Sbjct: 409 LFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSL 468
Query: 654 LNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713
L I+GE+ + G I SG I++ PQ WI+ GTI+DNI+FG +YD Y+ +KAC L+
Sbjct: 469 LMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLE 528
Query: 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 773
DI+L D +GE G+ LSGGQRAR++LARAVY +D+Y+LD + +D + I
Sbjct: 529 EDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF 588
Query: 774 SNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ + M KTRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 589 ESCLC-KLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 2e-66
Identities = 159/534 (29%), Positives = 274/534 (51%), Gaps = 46/534 (8%)
Query: 937 STSFYLVVLCIFCMFNSFLTL--VRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTP 994
TS Y + +S L L R L + ++H +L ++ AP+ +
Sbjct: 921 PTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMK 980
Query: 995 GGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK 1054
GRILNRF+ D+ +IDD LP L + + +LG V+S +Q + + +P I+
Sbjct: 981 AGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIM 1040
Query: 1055 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRT 1114
L+ ++ TS++L++L+S +RSPI++ +L G TIRAF + YF F + + L+
Sbjct: 1041 LRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN 1100
Query: 1115 SYSELTASLWLSLRL------------------------QVGLALSYAAPIVSLLGNFLS 1150
+ L+ W +R+ +VG+ L+ A I+S L ++
Sbjct: 1101 WFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVN 1160
Query: 1151 SFTETEKEMVSLERVLEYMDVPQEE----------------LCGYQSLSPDWPFQGLIEF 1194
S + + M S+ RV +++D+PQEE + WP G ++
Sbjct: 1161 SSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDV 1220
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
Q +T +Y + A L D++F++EGG +VG++GRTG+GKS++L+AL RL G+I +DG
Sbjct: 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST-EGEIQIDG 1279
Query: 1255 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV 1314
++ + ++ R F V+PQ F+F G+ R NLDP+ D +IW V E+ +K +E
Sbjct: 1280 VSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQF 1339
Query: 1315 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1372
L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T I++ +
Sbjct: 1340 PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399
Query: 1373 CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426
TVI HR+ +L + L+++ + + + Q LL +E S+F + A+
Sbjct: 1400 FSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAMSAA 1452
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 2e-66
Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 4/227 (1%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
G IEF+NV Y P L DINF+I+ G V IVG TGAGK++++N L R GQ
Sbjct: 1 GEIEFENVNFSYDEKKPV-LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK-CHVK 1308
IL+DG++I + + LR VV Q FLF G++ +N+ N + K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1309 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ + + G +T + E+G + S G+RQL+ +ARA+L+ K+L LDE T+N+D +T ++Q
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
A+ KG T I IAHR+ST+ N D+IL+LD G ++E+G LL
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 3e-63
Identities = 76/210 (36%), Positives = 113/210 (53%), Gaps = 39/210 (18%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IEF+NV+ Y L D++ TI+ G +V IVG +G+GKS++L L RL G+IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
+DG+++ + + LR A VPQ PFLF G++R+N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1312 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1371
S GQRQ I +ARALL+ +L LDE T+ +D +T +++ A+ +
Sbjct: 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 1372 ECKGMTVITIAHRISTVLNMDEILILDHGH 1401
KG TVI IAHR+ST+ + D I++LD G
Sbjct: 142 LAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 3e-62
Identities = 159/529 (30%), Positives = 261/529 (49%), Gaps = 51/529 (9%)
Query: 926 VDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985
+DT G + + + + +C+ + +S +R SF + R +++ L ++
Sbjct: 188 IDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQ 247
Query: 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFV---GLLGIAVVLSYVQVFFL 1042
+ FFD+ G + +R SSD + SL +N+LL N V GLLG + LS
Sbjct: 248 DLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVT 307
Query: 1043 LLLVPFWFIYSK-LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFM 1101
L+ +P F+ K Y+ S EL+ ++V+++ A E L+G T+R+F +E+
Sbjct: 308 LINLPLVFLAEKVFGKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEA 363
Query: 1102 AKFKEHV----VLYQRTSY--------SELTASLWLSLRLQVGLALSYAAPIVSLLGNFL 1149
++FKE + L +R + + + L L L G L + S GN +
Sbjct: 364 SRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSS--GNLV 421
Query: 1150 S------SFTETEKEMVSL-----------ERVLEYMD-VPQEELCGYQSLSPDWPFQGL 1191
S E + + + E+V EY+D P L G +L+P +GL
Sbjct: 422 SFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG--TLAPLN-LEGL 478
Query: 1192 IEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
IEFQ+V+ Y +P +P L + FT+ G V +VG +G+GKS++ L L GGQ
Sbjct: 479 IEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVK 1308
+L+DG+ ++ L + A+V Q P LF GS+R+N+ D +I + + +
Sbjct: 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAH 597
Query: 1309 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ + G +T V E G S GQ+Q I +ARAL++ +VL LDE T+ +DA+ +LQ
Sbjct: 598 DFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQ 657
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
S TV+ IAHR+STV D+IL+L G +VE G + L++D+
Sbjct: 658 E--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 1e-60
Identities = 104/238 (43%), Positives = 151/238 (63%), Gaps = 2/238 (0%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
G I+ ++ +RY+ +L L + I+ G +VGI GRTG+GKSS+ A FR+ I G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
I++DG++I P+ LR R +++ Q P LF GS+R NLDP D ++W LE +K
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1310 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
V+++ GL+ V E G +FSVGQRQL CLARA ++ S +L +DE TA++D T +ILQ
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1368 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425
+ + TV+TIAHR+ST+L+ D +L+L G LVE P+ LL E VF+S VR
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 2e-58
Identities = 153/581 (26%), Positives = 260/581 (44%), Gaps = 74/581 (12%)
Query: 893 AKFSGWFITLVICLSAILM--QASRNGNDLWLSYWVDTTGSSQ--TKYSTSFYLVVLCI- 947
+ + L+I +A L A R D S SS +Y +V L +
Sbjct: 18 GRVLAALVALLITAAATLSLPYAVRLMIDHGFS-----KDSSGLLNRYFAFLLVVALVLA 72
Query: 948 ---FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSS 1004
F L +R AV H +++ FFD+ G +++R ++
Sbjct: 73 LGTAARFYLVTWLGERVV---ADIRRAVFAH------LISLSPSFFDKNRSGEVVSRLTT 123
Query: 1005 DLYMIDDSLPFILNILLAN---FVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061
D ++ + L++ L N +G L + + S +LL VP + + F
Sbjct: 124 DTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPL--VLLPILLF--- 178
Query: 1062 TSRELRRL-----DSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV-----VLY 1111
R +R+L D ++ + YA ETL T++AF ED ++F V
Sbjct: 179 -GRRVRKLSRESQDRIADAGSYAG--ETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAAR 235
Query: 1112 QRT-------------SYSELTASLWLSLRLQVGLALS---------YAAPIVSLLGNFL 1149
QR + + LW+ + +S YA + +G
Sbjct: 236 QRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLS 295
Query: 1150 SSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KPSLPA 1207
+ E ++ + ER++E + + + P +G IEF+ V Y +P PA
Sbjct: 296 EVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA 355
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
L +N T+ G V +VG +GAGKS++ L R G+IL+DG+++ +LR
Sbjct: 356 -LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 1268 RFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEAV--GLETFVKES 1323
R A+VPQ P LF S+ +N+ + D D ++ + H E + A+ G +T++ E
Sbjct: 415 RMALVPQDPVLFAASVMENIR-YGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGER 473
Query: 1324 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1383
G++ S GQRQ I +ARA+LK + +L LDE T+ +DA++ ++Q A+ + KG T + IAH
Sbjct: 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAH 533
Query: 1384 RISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424
R++TVL D I+++D G +V QG L+ + +++ R
Sbjct: 534 RLATVLKADRIVVMDQGRIVAQGTHAELIA-KGGLYARLAR 573
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 2e-57
Identities = 139/510 (27%), Positives = 242/510 (47%), Gaps = 56/510 (10%)
Query: 942 LVVLCIFCMFNS--FLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
L VL C F S L+ V S + + + K++ PV FFD+ P G +L
Sbjct: 63 LAVLRGICSFVSTYLLSWV--------SNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLL 114
Query: 1000 NRFSSDLYMIDDSLPFILNILL---ANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056
+R + D + + +L+ +GL + + S+ +++++P L
Sbjct: 115 SRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV------LS 168
Query: 1057 FFYRSTSRELRRLDS---VSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF---KEHVVL 1110
R S+ LRR+ S + ETL G ++ F + Y +F
Sbjct: 169 ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRR 228
Query: 1111 YQR---------TSYSELTASLWLSLRLQVGLALS---------YAAPIVSLLGNF--LS 1150
+ ++L ASL L++ L + L + + A I +++ L
Sbjct: 229 LAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLK 288
Query: 1151 SFTET----EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP 1206
S T ++ + + E + +D P E+ G +++ +G +EF+NVT RY
Sbjct: 289 SLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIER---ARGDVEFRNVTFRYPGRDR 345
Query: 1207 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1266
AL I+ IE G V +VGR+G+GKS+++N + R GQIL+DG ++ + + LR
Sbjct: 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405
Query: 1267 GRFAVVPQSPFLFEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAV--GLETFVKE 1322
+ A+V Q LF ++ +N+ D +I L + ++ V+ + GL+T + E
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 1323 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1382
+G+ S GQRQ + +ARALLK + +L LDE T+ +D ++ ++Q A+ +G T + IA
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA 525
Query: 1383 HRISTVLNMDEILILDHGHLVEQGNPQTLL 1412
HR+ST+ D I+++D G +VE+G LL
Sbjct: 526 HRLSTIEKADRIVVMDDGRIVERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 3e-55
Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 3/227 (1%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+EF+NVT RY P L DI+ I G V +VG +G+GKS+++N + R + G+IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEE 1310
+DG ++ + + LR + +V Q FLF ++ +N+ ++ + E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1311 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
+ + G +T + E G+ S GQRQ I +ARALLK +L LDE T+ +D ++ ++Q A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1369 ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
+ K T IAHR+ST+ N D I++L+ G +VE+G + LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-54
Identities = 88/238 (36%), Positives = 132/238 (55%), Gaps = 28/238 (11%)
Query: 1192 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
IEF+NV+ RY PS P L ++ TI G V +VG +G GKS++++ L R G+
Sbjct: 1 IEFKNVSFRY-PSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
IL+DG++I + +R LR + +V Q P LF+G++ +N+ + D +E
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIR-YGKPDA----------TDEE 108
Query: 1310 EVEAV--------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
EA G +T V E G S GQ+Q I +ARALL++ K+L LDE T+
Sbjct: 109 VEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATS 168
Query: 1356 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
+DA++ ++Q A+ KG T I IAHR+ST+ N D I +L +G +VEQG L+
Sbjct: 169 ALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 1e-53
Identities = 122/568 (21%), Positives = 229/568 (40%), Gaps = 47/568 (8%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSK 345
LL +++ + PLL+ ++I L G L L + L L ++L S+ S+
Sbjct: 21 LLLLLSALLSLLLPLLIGRIIDALLADLGEL--LELLLLLLLLALLGGVLRALQSYLGSR 78
Query: 346 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVN-LANSFHDAWSLPF 404
L K+ + + +++K L + L+ + G++ + ++ D + N ++ ++
Sbjct: 79 LGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSIL 138
Query: 405 Q-IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEI 463
IG + L + A + L + +L + + +A + ++ + E R E
Sbjct: 139 LLIGSLVLLFSLSWRLALILLLILPLLALVL-SLLARKSRKLSRRVREALGELNARLLES 197
Query: 464 LTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP----TLFSLFT 519
L+ IR +K +G E + + + + + +
Sbjct: 198 LSGIRVIKAFGAEDRELKRFEEANEELRR--ANLRASRLEALLAPLMLLLSSLGTVLVLA 255
Query: 520 FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 579
G F ++ L + + L++P+ V++ L A + RL L
Sbjct: 256 LGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELL------ 309
Query: 580 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSL 639
+ + + ++ ++ + S+ + VL +S + G
Sbjct: 310 -------DEEPEVEDPPDPLKDTIGSIEFENVSFSY-----PGKKPVLKDISFSIEPGEK 357
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSG 686
VA++G GSGKS+L+ +L T G I G I V Q P + SG
Sbjct: 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417
Query: 687 TIRDNILFGKNYDPQSY-SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
TIR+NI G+ E LK I+ + G +GE+GVNLSGGQR RLA+A
Sbjct: 418 TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RA+ I +LD+ SA+D + I + + +T ++ H + I AD ++V
Sbjct: 478 RALLRNPPILILDEATSALDTETEALIQDA--LKKLLKGRTTLIIAHRLSTIKNADRIIV 535
Query: 806 MDKGQVKWIGSSADLAV--SLYSGFWST 831
+D G++ G+ +L LY+ +
Sbjct: 536 LDNGRIVERGTHEELLAKGGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 2e-52
Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 8/227 (3%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IEF+NVT Y P P L D++FTI G +V IVG +G+GKS+IL LFR + G IL
Sbjct: 1 IEFENVTFAYDPGRPV-LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVK 1308
+DG +I + LR VVPQ LF ++ N+ P +++ + + +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEE--VIEAAKAAQIH 117
Query: 1309 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+++ G +T V E G+ S G++Q + +ARA+LK+ +L LDE T+ +D T +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
A+ KG T I IAHR+ST++N D+I++L G +VE+G + LL
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 4e-52
Identities = 82/229 (35%), Positives = 130/229 (56%), Gaps = 3/229 (1%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
I +N++ RY P AL D+N TI+ G +VG +GAGKS++LN L G
Sbjct: 318 PIEISLENLSFRY-PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK-IWSVLEKCHV 1307
+I V+G+++ + R + + V Q+P+LF G++R+N+ + + I + L++ +
Sbjct: 377 EIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGL 436
Query: 1308 KEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
E V GL+T + E G S GQ Q + LARALL + +L LDE TA++DA+T I+
Sbjct: 437 LEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIIL 496
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
A+ K TV+ I HR+ + D I++LD+G LVEQG + L + +
Sbjct: 497 QALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQ 545
|
Length = 559 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 4e-51
Identities = 87/229 (37%), Positives = 128/229 (55%), Gaps = 7/229 (3%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I F++V RYKP P L +I+ I+ G VGIVGR+G+GKS++ + R G++L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1306
VDG ++ LR + VV Q LF S+RDN+ DP + + + L H
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ E E G +T V E G S GQRQ I +ARAL+ + ++L DE T+ +D ++ +
Sbjct: 121 ISELPE--GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
+ C G TVI IAHR+STV N D I++++ G +VEQG+ LL +
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN 227
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 5e-51
Identities = 134/447 (29%), Positives = 207/447 (46%), Gaps = 66/447 (14%)
Query: 1008 MIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKL-QFFYRSTSREL 1066
+ID LPF L LL + ++G +V + L+ +P + L Q + E
Sbjct: 267 LID--LPFALLFLLV--IAIIGGPLV------WVPLVAIPLILLPGLLLQRPLSRLAEES 316
Query: 1067 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1126
R S R A E+L+G TI+A +E F ++ E V + S L + +
Sbjct: 317 MRE-SAQR---NAVLVESLSGLETIKALNAEGRFQRRW-EQTVAA--LARSGLKSRFLSN 369
Query: 1127 L---------------------------RLQVG-------LALSYAAPIVSLLGNFLSSF 1152
L L +G L+ AP+ L G L+ +
Sbjct: 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAG-LLTRY 428
Query: 1153 TETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDI 1212
+ + + SL+ E M +P E G + L QG IEF+NV+ Y AL ++
Sbjct: 429 QQAKTALQSLD---ELMQLPVERPEGTRFLHRP-RLQGEIEFRNVSFAYPGQETPALDNV 484
Query: 1213 NFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1272
+ TI G +V I+GR G+GKS++L L L G +L+DG++I DLR V
Sbjct: 485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYV 544
Query: 1273 PQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISF 1327
PQ P LF G+LRDN+ P+ DD +I E V E V GL+ + E G S
Sbjct: 545 PQDPRLFYGTLRDNIALGAPYA--DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602
Query: 1328 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1387
S GQRQ + LARALL+ +L LDE T+ +D ++ ++ + G T++ + HR S
Sbjct: 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS- 661
Query: 1388 VLNM-DEILILDHGHLVEQGNPQTLLQ 1413
+L++ D I+++D+G +V G +L+
Sbjct: 662 LLDLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-50
Identities = 108/455 (23%), Positives = 202/455 (44%), Gaps = 41/455 (9%)
Query: 996 GRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW----FI 1051
G +LNR +D+ +D+ ++ + V + + + LS+ + LLL I
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1111
L FYR+ + L R+ + + FT+ + G + + F +ED + + +
Sbjct: 175 IPTL--FYRAGRKFGAHLAQ-GRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231
Query: 1112 QRTSYSELTASLW--LSLRLQVGLALSYAAPIVSLLGNF------------------LSS 1151
+ + + L L GL + ++ L +
Sbjct: 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEA 291
Query: 1152 FT--------ETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKP 1203
F + + S R+ + +D E + + +E +NV+ Y
Sbjct: 292 FEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATT---GQALELRNVSFTYPG 348
Query: 1204 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1263
AL + N T+ G +V I+GR+G+GKS++L L G I ++G+ I + +
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQ 408
Query: 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEA--VGLETFV 1320
LR +V+ Q LF G+LRDNL + + D ++W+ L++ +++ +E+ GL T++
Sbjct: 409 ALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWL 468
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1380
E G S G+R+ + LARALL + + LDE T +D T + + +G T++
Sbjct: 469 GEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLM 528
Query: 1381 IAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
+ HR+ + MD I++LD+G ++E+G LL +
Sbjct: 529 VTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANN 563
|
Length = 573 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 5e-50
Identities = 142/524 (27%), Positives = 230/524 (43%), Gaps = 74/524 (14%)
Query: 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 998
+ ++ + IF L +R + FA + R V++ L ++ P+ +F+ G
Sbjct: 182 ALAMLAVAIFEPA---LGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDT 238
Query: 999 LNRF-----------SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047
+ R S L ++ D L F++ L F + L+ V + L+
Sbjct: 239 VARVRELEQIRNFLTGSALTVVLD-LLFVVVFLAVMFF----YSPTLTGVVIGSLVCYAL 293
Query: 1048 FWFIYSKLQFFYRSTSRELRRL--DSVSRSPIYASF-TETLNGSSTIRAFKSEDYFMAKF 1104
+ LR+ D RS SF E++ G TI+A +E F ++
Sbjct: 294 LSVFVGPI----------LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRW 343
Query: 1105 KEHVVLYQRTSY----------------SELTAS--LWLSLRLQVGLALS---------- 1136
+ Y S+ +LT + LW L +G ALS
Sbjct: 344 DRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNML 403
Query: 1137 ---YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1193
P++ L F +T ++LER+ + ++ P E L+ +G I
Sbjct: 404 AGRVTQPVLRL-AQLWQDFQQT---GIALERLGDILNSPTEP--RSAGLAALPELRGAIT 457
Query: 1194 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1253
F+N+ RY P P L ++N I+ G +GIVG +G+GKS++ L RL GQ+LVD
Sbjct: 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517
Query: 1254 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSV-LEKCHVKE 1309
G+++ LR + VV Q LF S+RDN+ +P + I + L H
Sbjct: 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKLAGAHDFI 576
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
G T V E G + S GQRQ I +ARAL+ + ++L DE T+ +D ++ +++ +
Sbjct: 577 SELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM 636
Query: 1370 SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
C+G TVI IAHR+STV D I++L+ G + E G + LL
Sbjct: 637 REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 3e-47
Identities = 133/484 (27%), Positives = 224/484 (46%), Gaps = 70/484 (14%)
Query: 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILL---ANFVGLLGIAVVL 1034
L ++ PV FFD+ G +L+R + D + S L ++ A+ +GL +
Sbjct: 104 LFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163
Query: 1035 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLD---SVSRSPIYASFTETLNGSSTI 1091
S+ L+++ P + R S+ R + + + S + L G +
Sbjct: 164 SWQLSLILIVIAPI------VSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEV 217
Query: 1092 RAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS---LRLQVGLALS---YAAPIVSLL 1145
F ++ +F + V R ++ ++ +S ++L LAL+ YAA S++
Sbjct: 218 LIFGGQEVETKRF-DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM 276
Query: 1146 GNFLS-SFTETEKEMVSLERVL---------------------EYMDVPQEELCGYQSLS 1183
+ + T M++L R L +D+ QE+ G + +
Sbjct: 277 DTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIE 336
Query: 1184 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1243
+G IEF+NVT Y AL +INF I G V +VGR+G+GKS+I N L R
Sbjct: 337 R---AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393
Query: 1244 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
I G+IL+DG ++ + + LR + A+V Q+ LF ++ +N I
Sbjct: 394 DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN-----------IAYART 442
Query: 1304 KCHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348
+ + +E++E GL+T + E+G+ S GQRQ I +ARALL+ S +L
Sbjct: 443 EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPIL 502
Query: 1349 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1408
LDE T+ +D ++ +Q A+ K T + IAHR+ST+ DEIL+++ G +VE+G
Sbjct: 503 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTH 562
Query: 1409 QTLL 1412
LL
Sbjct: 563 AELL 566
|
Length = 582 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 170 bits (431), Expect = 5e-47
Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 1/195 (0%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
VL ++L + KG ++A+ G GSGK+SLL ILGE+ + G I SG I++ Q WI+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 686 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
GTI++NI+FG +YD Y +KAC L+ DI+ D +GE G+ LSGGQRAR++LA
Sbjct: 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RAVY +D+Y+LD +D + I + + M KTRIL T ++ + AD +++
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESCVC-KLMANKTRILVTSKMEHLKKADKILI 230
Query: 806 MDKGQVKWIGSSADL 820
+ +G + G+ ++L
Sbjct: 231 LHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 5e-47
Identities = 148/502 (29%), Positives = 235/502 (46%), Gaps = 86/502 (17%)
Query: 969 RAAVKVHNTLLTKIVNA----PVLFFDQTPGGRILNRFSSDLYMIDD-----------SL 1013
RAAV V L T +++A P+ FD P G++++R ++D +I D S
Sbjct: 91 RAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150
Query: 1014 PFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVS 1073
I +L+A F L + L + +F +L+V IY Q + R +R
Sbjct: 151 ALIGAMLVAMF--SLDWRMALVAIMIFPAVLVV--MVIY---QRYSTPIVRRVRAY---- 199
Query: 1074 RSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGL 1133
+ I F E +NG S I+ F+ + A+F E + S S A + +LRL G
Sbjct: 200 LADINDGFNEVINGMSVIQQFRQQ----ARFGERM---GEASRSHYMARMQ-TLRLD-GF 250
Query: 1134 ALSYAAPIVSLLG----------------------------NFLSSFTE------TEKEM 1159
L P++SL ++L E T++ M
Sbjct: 251 LLR---PLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSM 307
Query: 1160 -----VSLERVLEYMDVPQEELCGYQSLSPDWPFQ-GLIEFQNVTMRYKPSLPAALHDIN 1213
V+ ERV E MD P++ Y + D P Q G I+ NV+ Y+ L +IN
Sbjct: 308 LQQAVVAGERVFELMDGPRQ---QYGN--DDRPLQSGRIDIDNVSFAYRDDNLV-LQNIN 361
Query: 1214 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1273
++ V +VG TG+GKS++ + L P+ G+I +DG + + LR A+V
Sbjct: 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421
Query: 1274 QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQ 1331
Q P + + N+ + ++W LE + E ++ GL T + E G + SVGQ
Sbjct: 422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481
Query: 1332 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM 1391
+QL+ LAR L+++ ++L LDE TAN+D+ T +Q A+++ + T++ IAHR+ST++
Sbjct: 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEA 541
Query: 1392 DEILILDHGHLVEQGNPQTLLQ 1413
D IL+L G VEQG Q LL
Sbjct: 542 DTILVLHRGQAVEQGTHQQLLA 563
|
Length = 592 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 2e-46
Identities = 137/570 (24%), Positives = 235/570 (41%), Gaps = 59/570 (10%)
Query: 294 IGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352
+ A PL +I K L S VLAI L L ++ ++ ++ ++ L +L
Sbjct: 169 LALATPLFSQIVIDKVLPDASRSTL-TVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDL 227
Query: 353 SIMTIIYQKCLYVRLAERSEFSDGEIQT-FMSVDTDR---TVNLANSFHDAWSLPFQIGV 408
+ ++ L + L+ + S GEI + ++ R T ++ D L F +
Sbjct: 228 ELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREFLTGSILTLIID---LLFALIF 284
Query: 409 ALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIR 468
+ K + LA L + + L+ T K++++ E+ E + I
Sbjct: 285 LAVMFLYSWKLTLIV-LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIE 343
Query: 469 TLKMYGWE-QIFSSW---LMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 524
T+K E + S W L K + K L+ + L + FG
Sbjct: 344 TVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVL--ILWFGAIL 401
Query: 525 LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 584
++ +L + L ISP+ + A +++ RL L
Sbjct: 402 VLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL----------- 450
Query: 585 AANSPSYISNGLSNFN--SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 642
++P + + + ++ + + ++ V L +SL +P G VA+
Sbjct: 451 --DTPPEQEGDKTLIHLPKLQGEIEFENVS---FRYGPDDPPV-LEDLSLEIPPGEKVAI 504
Query: 643 IGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIR 689
+G GSGKS+LL +LG G I G + YV Q P++ SG+IR
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564
Query: 690 DNILFGKNYDPQ-SYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
+NI G +P+ + E ++A L I + G +GE G NLSGGQR RLALA
Sbjct: 565 ENIALG---NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RA+ I +LD+ SA+D + IL N + + +T I+ H + I +AD ++V
Sbjct: 622 RALLSKPKILLLDEATSALDPETEAIILQN--LLQILQGRTVIIIAHRLSTIRSADRIIV 679
Query: 806 MDKGQVKWIGSSADLAVS--LYSGFWSTNE 833
+D+G++ GS +L LY+ + E
Sbjct: 680 LDQGKIVEQGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 1e-45
Identities = 89/244 (36%), Positives = 135/244 (55%), Gaps = 5/244 (2%)
Query: 1188 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1247
+G +EF +V+ Y S + D++F + G V IVG TGAGKS+++N L R+
Sbjct: 331 VKGAVEFDDVSFSYDNSRQG-VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389
Query: 1248 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1304
G+IL+DG +I LR AVV Q LF S+ DN+ P +++++ + +
Sbjct: 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ 449
Query: 1305 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364
H E + G +T V E G S G+RQ + +ARALLK +L LDE T+ +D +T +
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 1365 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424
++ A+ KG T IAHR+STV N D IL+ D+G +VE G+ L+ F++ +R
Sbjct: 510 VKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVA-RGGRFAALLR 568
Query: 1425 ASTM 1428
A M
Sbjct: 569 AQGM 572
|
Length = 588 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 2e-45
Identities = 83/223 (37%), Positives = 117/223 (52%), Gaps = 9/223 (4%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
G IEF+NV+ Y AL +++ TI G +V I+GR G+GKS++L L L G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH 1306
+L+DG +I DLR VPQ LF G+LRDN+ P DD +I E
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--DDERILRAAELAG 118
Query: 1307 VKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364
V + V GL+ + E G S GQRQ + LARALL +L LDE T+ +D +
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1365 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
L+ + T+I I HR S +L++ D I+++D G +V G
Sbjct: 179 LKERLRQLLGDKTLIIITHRPS-LLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 4e-44
Identities = 77/260 (29%), Positives = 137/260 (52%), Gaps = 13/260 (5%)
Query: 1161 SLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGT 1220
SL LE ++ G + L+ + P IE +++ + P +NFT+ G
Sbjct: 323 SLVTFLETPLAHPQQ--GEKELASNDPVT--IEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1280
++ +VG +GAGK+S+LNAL P G + ++G+ + R + V Q+P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1281 GSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLI 1335
G+LRDN+ +P +D+ ++ LE V E + + GL+T + + SVGQ Q +
Sbjct: 437 GTLRDNVLLGNP-DASDE-QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494
Query: 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEIL 1395
LARALL+ ++L LDE TA++DA + ++ A+++ + T + + H++ + D+I
Sbjct: 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554
Query: 1396 ILDHGHLVEQGNPQTLLQDE 1415
++ G +V+QG+ L Q
Sbjct: 555 VMQDGQIVQQGDYAELSQAG 574
|
Length = 588 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-43
Identities = 76/210 (36%), Positives = 120/210 (57%), Gaps = 6/210 (2%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+EF V++ Y P AL ++FT+ G +V +VG +GAGKS++LN L G I
Sbjct: 322 LEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKE 1309
V+G+ + + R + A VPQ PFLF G++ +N+ D D +I LE+ + E
Sbjct: 381 VNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIR-LARPDASDAEIREALERAGLDE 439
Query: 1310 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
V A+ GL+T + E G S GQ Q + LARA L+ + +L LDE TA++DA+T + +
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 1368 AISSECKGMTVITIAHRISTVLNMDEILIL 1397
A+ + +G TV+ + HR++ D I++L
Sbjct: 500 ALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 6e-43
Identities = 139/529 (26%), Positives = 232/529 (43%), Gaps = 94/529 (17%)
Query: 950 MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1009
+ LT ++ + ++ AV + L I+ PV FF Q G I +R
Sbjct: 205 LLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQ------ 258
Query: 1010 DDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK--------------L 1055
LN +A F+ L V + F LL+ +Y L
Sbjct: 259 -------LNDQVAEFLSGQLATTALDAVMLVFYALLM---LLYDPVLTLIGIAFAAINVL 308
Query: 1056 QFFYRSTSREL--RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF--------- 1104
S R RRL + + + L T++A E F +++
Sbjct: 309 ALQLVSRRRVDANRRLQQDAGKLTGVAIS-GLQSIETLKASGLESDFFSRWAGYQAKLLN 367
Query: 1105 --KEHVVLYQR-----TSYSELTASLWLSL--------RLQVG-------LALSYAAPIV 1142
+E VL Q T + L ++L L + +L +G L S+ P+
Sbjct: 368 AQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVN 427
Query: 1143 SLLGNFLSSFTETEKEMVSLERVLEY-MDVPQEELCGYQSLS-PDWPFQGLIEFQNVTMR 1200
+L+G F + E E ++ L+ VL +D EE + S P G +E +N+T
Sbjct: 428 NLVG-FGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFG 486
Query: 1201 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG------GQILVDG 1254
Y P P + + + T++ G +V +VG +G+GKS+I +L + G G+IL DG
Sbjct: 487 YSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA----KL--VAGLYQPWSGEILFDG 540
Query: 1255 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH---VK 1308
+ P L A+V Q FLFEG++RDNL DP + D ++ C +
Sbjct: 541 IPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDA----DLVRACKDAAIH 595
Query: 1309 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ + + G + + E G + S GQRQ + +ARAL+++ +L LDE T+ +D +T I+
Sbjct: 596 DVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIID 655
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
+ + +G T I +AHR+ST+ + DEI++L+ G +V++G + L
Sbjct: 656 DNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG 702
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-42
Identities = 136/503 (27%), Positives = 236/503 (46%), Gaps = 53/503 (10%)
Query: 950 MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1009
+ L+ ++ F R ++ + + + + P+ FF G I++RF+ +I
Sbjct: 207 IIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSII 266
Query: 1010 DDSLPFILNILL-ANFVGLLGIAVVLSYVQVFFLLLL-VPFWFIYSKLQFFYRSTSRELR 1067
D IL++ L + ++G+ +V + +F L LL +P +Y+ + ++ T +L
Sbjct: 267 DALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIP---VYAVIIILFKRTFNKLN 323
Query: 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSE-------DYFMAKFKEHVVLYQRTSYSE-- 1118
+ + + +S E LNG TI++ SE D + YQ+ +
Sbjct: 324 HDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383
Query: 1119 LTASLWLSL---------------RLQVGLALSYAAPIVSLLGNFLSSF-------TETE 1156
+ A L L +L +G +++ A LL FL+ + +
Sbjct: 384 IKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNA----LLSYFLTPLENIINLQPKLQ 439
Query: 1157 KEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTI 1216
V+ R+ E V E + + + G I +V+ Y L DI+ TI
Sbjct: 440 AARVANNRLNEVYLVDSEFINKKKRTELNNL-NGDIVINDVSYSYGYGSNI-LSDISLTI 497
Query: 1217 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSP 1276
+ ++ IVG +G+GKS++ L G+IL++G ++ + LR +PQ P
Sbjct: 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557
Query: 1277 FLFEGSLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVG 1330
++F GS+ +NL D+ IW+ E +K+++E +G +T + E G S S G
Sbjct: 558 YIFSGSILENLLLGAKENVSQDE--IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615
Query: 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKGMTVITIAHRISTVL 1389
Q+Q I LARALL SKVL LDE T+N+D T I+ N ++ + K T+I +AHR+S
Sbjct: 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK--TIIFVAHRLSVAK 673
Query: 1390 NMDEILILDHGHLVEQGNPQTLL 1412
D+I++LDHG ++EQG+ LL
Sbjct: 674 QSDKIIVLDHGKIIEQGSHDELL 696
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-42
Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 22/203 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--------------- 671
L+ +++ +P G L ++G+VG GKSSLL +ILGEM G +H S
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 672 --GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
S+AY Q PW+L+ T+ +NI FG ++ Q Y AC+L DI L+ GD IGE
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ---KT 786
+G+NLSGGQR R+ +ARA+Y ++I LDD SA+D ++ ++ I+ LQ +T
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL--KFLQDDKRT 194
Query: 787 RILCTHNVQAISAADMVVVMDKG 809
+L TH +Q + AD ++ M G
Sbjct: 195 LVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-41
Identities = 80/232 (34%), Positives = 133/232 (57%), Gaps = 4/232 (1%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGD 59
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
I +DG++ + P++ R F V+PQ F+F G+ R NLDP+ D +IW V E+ +K
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1310 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T +++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1368 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVF 1419
+ TVI HRI +L L+++ + + + Q LL +E S F
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHF 230
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 1e-40
Identities = 120/446 (26%), Positives = 208/446 (46%), Gaps = 56/446 (12%)
Query: 1007 YMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFF--LLLLVPFWFIYSKLQFFYRSTSR 1064
+++ + LP ++ I L +L + ++L + F I S R
Sbjct: 58 WILFNILPTLVEISLV--AVILWRVYGWWFALTTLVTVILYLLFTVIVS--------DWR 107
Query: 1065 -ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL 1123
+ RRL + + S A ++L T++ F +E+Y ++ + Y++ + + L
Sbjct: 108 TDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLL 167
Query: 1124 WLSL------------------------RLQVG---LALSYAAPIVSLLGNFLSSFTETE 1156
L+ +L VG + + L S+ E
Sbjct: 168 VLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIR 227
Query: 1157 KEMVSLERVLEYMDVPQEELCGYQSLSPD----WPF-QGLIEFQNVTMRYKPSLPAALHD 1211
+ + +E++ + +DV E S +PD WP G + F NV+ Y P P L+
Sbjct: 228 QALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPI-LNG 281
Query: 1212 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271
I+FTI G V IVG +GAGKS+IL LFR + G I +DG +I + + LR +
Sbjct: 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341
Query: 1272 VPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEA--VGLETFVKESGISF 1327
VPQ LF ++ N+ + D ++ + E + + +++ G +T V E G+
Sbjct: 342 VPQDTVLFNDTIAYNIK-YGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400
Query: 1328 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1387
S G++Q + +AR +LK+ +L LDE T+ +D T +Q A+ G T + IAHR+ST
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLST 460
Query: 1388 VLNMDEILILDHGHLVEQGNPQTLLQ 1413
+++ DEI++LD+G +VE+G + LL
Sbjct: 461 IIDADEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 2e-40
Identities = 132/479 (27%), Positives = 212/479 (44%), Gaps = 90/479 (18%)
Query: 996 GRILNRFSSDLYMID--DSLPF-ILNILLANFVGLLGIAVVLSYVQV-------FFLLLL 1045
G +LNR +D +D D L +++ L+A V +L + + LS+ + LLLL
Sbjct: 117 GDLLNRLVAD---VDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLL 173
Query: 1046 VPFWFIYSKLQFFYR---STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMA 1102
+ L FYR ++L L + R TE L G + + F +ED +
Sbjct: 174 ---LLLLPLL--FYRLGKKPGQDLTHLRAQYRV----QLTEWLQGQAELTLFGAEDRYRQ 224
Query: 1103 KFK--EHVVLYQRTSYSELT----ASLWLSLRLQVGLALSYAAPIV-------SLLGNF- 1148
+ + E L + + LT A + L+ L V L L AA V +L+ F
Sbjct: 225 QLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFV 284
Query: 1149 ---LSSFTETEKEMV---------------SLERVLEYMDVPQEELCGYQSLSPDWPFQG 1190
L++F E + S R+ E + Q+ + + S Q
Sbjct: 285 FAALAAF-----EALMPVAGAFQHLGQVIASARRINEITE--QKPEVTFPTTSTAAADQV 337
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+ NV+ Y L ++ I+ G +V ++GRTG GKS++L L R G+I
Sbjct: 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHV 1307
L++G I + LR +VV Q LF +LRDNL P D + VL++
Sbjct: 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP--NASDEALIEVLQQ--- 452
Query: 1308 KEEVEAVGLETFVK----------ESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
VGLE ++ E G S G+++ + +ARALL + +L LDE T +
Sbjct: 453 ------VGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGL 506
Query: 1358 DAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
DA+T IL+ ++ + TV+ I HR++ + D I ++D+G ++EQG Q LL +
Sbjct: 507 DAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564
|
Length = 574 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 4e-40
Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 10/243 (4%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+IE +N+T +Y A L ++F +E G G++G GAGK+++L L L G+I
Sbjct: 4 VIEVRNLTKKYGGDKTA-LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLK-IWSVLEKCHVK 1308
LV G +++ P +R R VPQ P L+ ++R+NL+ F L + + ++
Sbjct: 63 LVLGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFAR---LYGLSKEEAEERIE 118
Query: 1309 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
E +E GLE + + S G +Q + +A ALL ++L LDE T+ +D ++ +
Sbjct: 119 ELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 1369 ISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425
+ K G+T++ H + + D ++IL+ G ++ +G P+ L + +
Sbjct: 179 LRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEP 238
Query: 1426 STM 1428
+
Sbjct: 239 ERL 241
|
Length = 293 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-38
Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 9/228 (3%)
Query: 1181 SLSPDWPFQGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1238
SL+PD +G+++FQNVT Y P+ P L D++FT+ G +VG +G+GKS+++
Sbjct: 2 SLAPD-HLKGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVAL 59
Query: 1239 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DL 1296
L GGQ+L+DG I + L + ++V Q P LF SL+DN+ + +
Sbjct: 60 LENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI-AYGLQSCSFE 118
Query: 1297 KIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354
+ +K H + A G +T V E G S GQ+Q + +ARAL+++ +VL LDE T
Sbjct: 119 CVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT 178
Query: 1355 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1402
+ +DA++ +Q A+ + TV+ IAHR+STV D+IL+LD G +
Sbjct: 179 SALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-38
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 26/219 (11%)
Query: 1192 IEFQNVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
I ++ + + L DIN + G V IVG G+GKSS+L+AL G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKC 1305
+ V G A V Q P++ G++R+N+ PF D+ + V++ C
Sbjct: 61 SVSV-------------PGSIAYVSQEPWIQNGTIRENILFGKPF---DEERYEKVIKAC 104
Query: 1306 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
++ ++E + G T + E GI+ S GQ+Q I LARA+ + + LD+ + VDA
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 1364 -ILQNAISSECKGM-TVITIAHRISTVLNMDEILILDHG 1400
I +N I T I + H++ + + D+I++LD+G
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 1e-37
Identities = 144/518 (27%), Positives = 220/518 (42%), Gaps = 80/518 (15%)
Query: 955 LTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLP 1014
L ++R + SL+AAV + LL PV FF Q G + +R + I L
Sbjct: 198 LAVLRLETRMDASLQAAV--WDRLL----RLPVSFFRQYSTGDLASRAMG-ISQIRRILS 250
Query: 1015 -FILNILLANFVGLLGIAVVLSY------VQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1067
L LL+ LL + ++ Y V V L+ + + LQ R L
Sbjct: 251 GSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRK---ERRLL 307
Query: 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMA----KFKEHVVLYQRTSYSE-LTAS 1122
L I + +NG S +R +E+ A F L E L
Sbjct: 308 ELSG----KISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTV 363
Query: 1123 LWLSLRLQVGLALSYAAPIVSLLGN----------FLSSFTETEKEMVSL-ERVLEYMDV 1171
L + AL AA +SLLG F ++F + L ++ + V
Sbjct: 364 FNAVLPVLTSAALFAAA--ISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAV 421
Query: 1172 -PQEELCGYQSLSPDW--------------PFQGLIEFQNVTMRYKPSLPAALHDINFTI 1216
P ++ P G IE VT RY+P P L D++ I
Sbjct: 422 IPL-----WERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQI 476
Query: 1217 EGGTQVGIVGRTGAGKSSILNALFRL-----TPICGGQILVDGLNIINTPVRDLRGRFAV 1271
E G V IVG +G+GKS+ L RL TP G + DG ++ V+ +R + V
Sbjct: 477 EPGEFVAIVGPSGSGKST----LLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVRRQLGV 531
Query: 1272 VPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGIS 1326
V Q+ L GS+ +N+ P +++ W + E++ A +G+ T + E G +
Sbjct: 532 VLQNGRLMSGSIFENIAGGAPLTLDE---AWEAARMAGLAEDIRAMPMGMHTVISEGGGT 588
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1386
S GQRQ + +ARAL++ ++L DE T+ +D +T +I+ S E +T I IAHR+S
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE--SLERLKVTRIVIAHRLS 646
Query: 1387 TVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424
T+ N D I +LD G +V+QG L+ E +F+ R
Sbjct: 647 TIRNADRIYVLDAGRVVQQGTYDELMARE-GLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-36
Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 13/316 (4%)
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIALG 326
SL+R + A Y K+++D P+LL +KFL + G L + L
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLF 292
Query: 327 LTSILKSFFDTQYSFHLS-KLKLKLRSSIMTIIYQKCLYV--RLAERSEFSDGEIQTFMS 383
LT +++S ++ +++S + L+ RS++ +I++KC + + + + + G I MS
Sbjct: 293 LTQLIQSVCLHRF-YYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMS 351
Query: 384 VDTDRTVNLANSFHD----AWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 439
D +R NSF WS P + +++ LL V + + +A+ ++ +P+N I
Sbjct: 352 TDVER----INSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIM 407
Query: 440 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKY 499
A K+ K D R++ T E + IR K WE F + + R+ E+++L +
Sbjct: 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467
Query: 500 LDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGL 559
F TPTL F ++ L+GH+L +VF +AL L P PWV +
Sbjct: 468 ARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTV 527
Query: 560 IDAFISIRRLTRFLGC 575
+ +SI+R++ FL C
Sbjct: 528 LQFLVSIKRISTFLEC 543
|
Length = 1560 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 64/204 (31%), Positives = 87/204 (42%), Gaps = 56/204 (27%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
VL VSL + G VA++G GSGKS+LL +L T G I G
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD 70
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+IAYVPQ P++ SGTIR+NI
Sbjct: 71 LESLRKNIAYVPQDPFLFSGTIRENI---------------------------------- 96
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
LSGGQR R+A+ARA+ I +LD+ SA+D + IL + KT
Sbjct: 97 -------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA--LRALAKGKT 147
Query: 787 RILCTHNVQAISAADMVVVMDKGQ 810
I+ H + I AD ++V+D G+
Sbjct: 148 VIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-35
Identities = 75/220 (34%), Positives = 121/220 (55%), Gaps = 5/220 (2%)
Query: 1198 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1257
Y + AL ++NFT++ G +GI G TG+GKS++L+ + R + G I + +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 1258 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV-- 1314
+ R R AVV Q+PFLF ++ +N+ + +I V V +++ +
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 1315 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSEC 1373
G +T V E G+ S GQ+Q I +ARALL ++++L LD+ + VD +T IL N +
Sbjct: 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWG 498
Query: 1374 KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
+G TVI AHR+S + EIL++ HGH+ ++GN L Q
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 3e-35
Identities = 85/240 (35%), Positives = 135/240 (56%), Gaps = 5/240 (2%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
G +EF+++T + + + D++F + G V IVG TGAGK++++N L R+ GQ
Sbjct: 333 GAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVK 1308
IL+DG++I LR A V Q LF S+R+N+ D +++ +
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451
Query: 1309 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ + G +T V E G S G+RQ + +ARA+LK++ +L LDE T+ +D +T + ++
Sbjct: 452 DFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426
NAI + K T IAHR+STV N D +L LD G L+E+G+ Q L+Q + F +R S
Sbjct: 512 NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRFYKLLRRS 570
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 5e-35
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 40/210 (19%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E +NV+ RY + P L +++F+IE G + I+G +G+GKS++ + L G++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
+DG +I +L +PQ LF GS+ +N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1312 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1371
S GQRQ + LARAL + ++L LDE +++D + L AI++
Sbjct: 97 ---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
Query: 1372 -ECKGMTVITIAHRISTVLNMDEILILDHG 1400
+ G T I IAHR T+ + D IL+L+ G
Sbjct: 142 LKAAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 9e-35
Identities = 100/442 (22%), Positives = 188/442 (42%), Gaps = 73/442 (16%)
Query: 995 GGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL------------ 1042
G +L R +D +D + +++ V L+ A ++ + V +
Sbjct: 109 RGDLLGRLGAD---VDALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLL 165
Query: 1043 -LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFM 1101
+ P + + R+ + L RL R + A T+ L+G++ + A + +
Sbjct: 166 AGFVAPLVSLRAA-----RAAEQALARL----RGELAAQLTDALDGAAELVASGALPAAL 216
Query: 1102 AKF----KEHVVLYQRTSYSE--------------LTASLWLS-------------LRLQ 1130
A+ +E +R + + + +LW L +
Sbjct: 217 AQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAVL 276
Query: 1131 VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQG 1190
V L L+ A + L T + ER++E +D G +
Sbjct: 277 VLLPLA-AFEAFAALPAAAQQLTRVRA---AAERIVEVLDAAGPVAEGSAPAAGAVGLGK 332
Query: 1191 L-IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
+E ++++ Y + P L ++ + G +V I+G +G+GKS++L L L G+
Sbjct: 333 PTLELRDLSAGYPGA-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE 391
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-----DPFHMNDDLKIWSVLEK 1304
+ +DG+ + + ++R R +V Q LF+ ++R+NL D D ++W+ LE+
Sbjct: 392 VTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDA----TDEELWAALER 447
Query: 1305 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
+ + + A+ GL+T + E G S G+RQ + LARALL + +L LDE T ++DA+TA
Sbjct: 448 VGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETA 507
Query: 1363 SILQNAISSECKGMTVITIAHR 1384
L + + G TV+ I H
Sbjct: 508 DELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 31/239 (12%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPIC-- 1246
IE +++ + Y AL DI+ I G ++G +G GKS++L L RL P
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1247 GGQILVDGLNI--INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1304
G++L+DG +I ++ V +LR R +V Q P F GS+ DN+ L++ + K
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAY-----GLRLHGIKLK 113
Query: 1305 CHVKEEVEA----VGLETFVKE--SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
+ E VE L VK+ + S GQ+Q +CLARAL +VL LDE T+ +D
Sbjct: 114 EELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
Query: 1359 AQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTL 1411
+ + ++ I+ K T++ + H R++ D L +G LVE G + +
Sbjct: 174 PISTAKIEELIAELKKEYTIVIVTHNMQQAARVA-----DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 5e-34
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 31/243 (12%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ L+ ++L + G L A++G G+GKS+LLN +LG + T G I +G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP 390
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMV----GGD 723
I++V Q P++ +GTIR+NIL + P + E + A + V G D
Sbjct: 391 EAWRKQISWVSQNPYLFAGTIRENILLAR---PDASDEEIIAALDQAGLLEFVPKPDGLD 447
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
IGE G LSGGQ RLALARA+ + + +LD+ + +DA+ + IL +
Sbjct: 448 TV-IGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA--LQELAK 504
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQ 843
QKT ++ TH ++ + AD +VV+D G++ G+ +L +L Q++
Sbjct: 505 QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEEL--------SEKQGLYANLLKQQE 556
Query: 844 EMR 846
R
Sbjct: 557 GRR 559
|
Length = 559 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 8e-34
Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+ NV+ Y L +++ ++ G ++ ++GR+G+GKS++L L G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
+DG+ + + + L +V+ Q P+LF+ +LR+NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1312 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1371
G FS G+RQ + LAR LL+ + ++ LDE T +D T L + I
Sbjct: 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143
Query: 1372 ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1406
K T+I I H ++ + +MD+IL L++G ++ QG
Sbjct: 144 VLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 20/237 (8%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
++E +N++ Y L D++F+I G GI+G G+GKS++L L L G++
Sbjct: 2 MLEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRD--------NLDPFHMNDDLKIWSV 1301
L+DG +I + ++L + A VPQSP G ++ + +L F S
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF------GRPSK 113
Query: 1302 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1361
++ V+E +E +GLE S G+RQ + +ARAL + + +L LDE T+++D
Sbjct: 114 EDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 1362 ASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
+ + + G+TV+ + H ++ D +++L G +V QG P+ +L +E
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230
|
Length = 258 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 5e-33
Identities = 112/514 (21%), Positives = 200/514 (38%), Gaps = 80/514 (15%)
Query: 343 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 402
LS L+++L ++K + A + G++ + D D L N +
Sbjct: 90 LSALRVRL--------FEKLEPLSPALLLRYRSGDLLNRLVADVD---ALDNLYLRV-IA 137
Query: 403 PFQIGVALYLLYTQVKFAFVSGLAITI--------LLIPVNKWIANLIANATEKMMKQKD 454
P + + L + T F LA+ + L+IP + + Q
Sbjct: 138 PAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIP---TLFYRAGRKFGAHLAQGR 194
Query: 455 ERIR-RTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPT 513
+R + + + L ++G E + + L T +S +K +
Sbjct: 195 AALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL----L 250
Query: 514 LFSLFT-FGLFALMGHQLD---------AAMVFTCLALFNSLISPLNSFPWVINGLIDAF 563
L + GL M Q+ A + A + + +I
Sbjct: 251 LIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIA-- 308
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQ 623
S RRL L + E + A+ +++ + ++ +Q
Sbjct: 309 -SARRLNDIL-----DQKPEVTFPDE--------QTATTGQALELRNVSFTY----PGQQ 350
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L +L L +G VA++G GSGKS+LL + G GSI +G
Sbjct: 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410
Query: 673 --SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMV----GGDMAY 726
+I+ + Q + SGT+RDN+ P + E L A V + ++ G +
Sbjct: 411 RETISVLTQRVHLFSGTLRDNLRLAN---PDASDEELWAALQQVGLEKLLESAPDGLNTW 467
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+GE G LSGG+R RLALARA+ H + +++LD+ +D R +L A++ H KT
Sbjct: 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL--ALLFEHAEGKT 525
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
++ TH ++ + D ++V+D G++ G+ A+L
Sbjct: 526 LLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559
|
Length = 573 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 10/215 (4%)
Query: 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252
E +N++ Y AL DI+ TI+ G V IVG G+GKS++L L L G++LV
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1253 DGLNIINTPVRDLRGRFAVVPQSPF--LFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVK 1308
DG ++ +++LR + +V Q+P F ++ + + ++ + + E+ V+
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEE--IEER--VE 116
Query: 1309 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
E +E VGLE S + S GQ+Q + +A L +L LDE TA +D L
Sbjct: 117 EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 1369 ISS-ECKGMTVITIAHRISTVLN-MDEILILDHGH 1401
+ + +G T+I + H + +L D +++L+ G
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 4e-32
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 56/211 (26%)
Query: 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252
E +N++ RY AL +++ T++ G V +VG G+GKS++L A+ L G+IL+
Sbjct: 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1253 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1312
DG +I P+ +LR R VPQ
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ-------------------------------------- 80
Query: 1313 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1372
S GQRQ + LARALL + +L LDE T+ +D + L +
Sbjct: 81 --------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 1373 C-KGMTVITIAHRISTVLN-MDEILILDHGH 1401
+G TVI + H D +++L G
Sbjct: 127 AEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 15/234 (6%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+IE +N++ RY AAL D++ IE G +V ++G G+GKS++L L L G++
Sbjct: 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1251 LVDGLNI-INTPVRDLRGRFAVVPQSP--FLFEGSLRDNLD---PFHMNDDLKIWSVLEK 1304
LVDGL+ + +LR + +V Q+P LF ++ D + +I
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER--- 118
Query: 1305 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364
V E +E VGLE + + S GQ+Q + +A L ++L LDE TA +D +
Sbjct: 119 --VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 1365 LQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415
L + E G T+I + H + VL D +++LD G ++ G+P + D
Sbjct: 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ VL +SL +P G VA++G GSGKS+L+N I + G I G
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT 70
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMA 725
I V Q ++ + T+ +NI +G+ + E +A I + G
Sbjct: 71 LASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT 130
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ- 784
IGE+GV LSGGQR R+A+ARA+ I +LD+ SA+D + R + A+ +++
Sbjct: 131 VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV-QAAL--ERLMKN 187
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T + H + I AD +VV++ G++ G+ +L
Sbjct: 188 RTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEEL 223
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+E+ VL ++ + G VA++G G+GK++L+N ++ G I G
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQ-SYSETLKACTLDVDISLMVGGDMAY 726
I V Q ++ SGTI +NI G+ E K I + G
Sbjct: 73 KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+GE G NLS G+R LA+ARA+ I +LD+ S +D + + I + M +T
Sbjct: 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI--QEALEKLMKGRT 190
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGS 816
I+ H + I AD ++V+D G++ G+
Sbjct: 191 SIIIAHRLSTIKNADKILVLDDGKIIEEGT 220
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 28/215 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMMLTHGSI------HASG 672
+L +SL +P G VA++G G GKS++++ + GE++L I
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 673 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYIG 728
I V Q P + GTI +NI +GK E +A D +SL G D +G
Sbjct: 78 QIGLVSQEPVLFDGTIAENIRYGKPDATDE--EVEEAAKKANIHDFIMSLPDGYD-TLVG 134
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQK 785
E+G LSGGQ+ R+A+ARA+ I +LD+ SA+DA+ + + L A+ G +
Sbjct: 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKG-----R 189
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
T I+ H + I AD++ V+ GQV G+ +L
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDEL 224
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-30
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 16/197 (8%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L VS +P G VA++G G+GKS+LLN +LG + T GSI +G
Sbjct: 335 RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394
Query: 673 --SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
IA+VPQ P++ +GTI +NI + E L+ LD ++ + G IGE
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
G LSGGQ RLALARA + + +LD+ + +DA+ +L + +T +L
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL--EALRALAQGRTVLL 512
Query: 790 CTHNVQAISAADMVVVM 806
TH + + AD +VV+
Sbjct: 513 VTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 4e-30
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 43/254 (16%)
Query: 1191 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---- 1244
L+E +N+T+ + A+ D++F +E G +GIVG +G+GKS++ AL L P
Sbjct: 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1245 ICGGQILVDGLNIIN---TPVRDLRG-RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1300
I G++++DG +++ +R LRG R A++ Q P SL N + I
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM---TSL---------NPVMTIGD 112
Query: 1301 VLEKCH------VKEEVEAVGLETFVKESGIS-----------FSVGQRQLICLARALLK 1343
+ + + E +E ++ G+ S G RQ + +A AL
Sbjct: 113 QIREALRLHGKGSRAEARKRAVELL-EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL 171
Query: 1344 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHG 1400
K+L DE T +D T + + + + + GM V+ I H + V + D ++++ G
Sbjct: 172 KPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231
Query: 1401 HLVEQGNPQTLLQD 1414
+VE G + +L +
Sbjct: 232 EIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-30
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 44/214 (20%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +N++ RY AL DI+ T+E G G++G GAGK++++ + L G+I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
V G +I P +++ R +P+ P L+E ++R+NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
S G +Q + LA+ALL ++L LDE T+ +D ++ +
Sbjct: 96 ----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLR 139
Query: 1371 SECK-GMTVITIAHRISTVLNM-DEILILDHGHL 1402
K G T++ +H + + D + IL++G +
Sbjct: 140 ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 1e-29
Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 30/237 (12%)
Query: 1191 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
L+E +N+++ + AL D++F+I+ G +G+VG +G+GKS++ A+ L G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 1249 QILVDGLNIINTP---VRDLRGRFAVVPQSPFLFEGSLRDNLDP-----FHMNDDLKIWS 1300
I+ DG +++ + R +V Q P +L+P + + L+I
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS-------SLNPRMTIGEQIAEPLRIHG 113
Query: 1301 VLEKCHVKEEVEAVGLETFVKESGIS------FSVGQRQLICLARALLKSSKVLCLDECT 1354
L K ++E + L + S GQRQ + +ARAL + K+L DE T
Sbjct: 114 KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 1355 ANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+ +D AQ +L+ + E G+T++ I H + V + D + ++ G +VE+G
Sbjct: 174 SALDVSVQAQILDLLKK-LQEE-LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-29
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 26/227 (11%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E + ++ Y AL D++ T+E G + ++G +G GK+++L + L G+IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLEKC 1305
+DG ++ P R +V Q LF P H+ ++ LK+ V +
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALF---------P-HLTVAENIAFGLKLRGVPKAE 106
Query: 1306 H---VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
V+E +E VGLE + S GQ+Q + LARAL + +L LDE + +DA+
Sbjct: 107 IRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166
Query: 1363 SILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
L+ + + G+T I + H L + D I +++ G +V+ G
Sbjct: 167 EELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 46/244 (18%), Positives = 99/244 (40%), Gaps = 8/244 (3%)
Query: 898 WFITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFYL-VVLCIFCMFNSFL 955
+ L++ + L+ L L ++D + + S+ L ++L + L
Sbjct: 4 AILLLILAGATALVFP------LLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLL 57
Query: 956 TLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPF 1015
+ R ++ LL +I+ P+ FFD G + +R ++D+ I D L
Sbjct: 58 LQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGD 117
Query: 1016 ILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRS 1075
L + + ++G +V+ Y L+L+ + L R+L R + + +
Sbjct: 118 KLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYA 177
Query: 1076 PIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLAL 1135
+ E+L+G T++AF E+Y + ++ + + ++ + + Q+ L
Sbjct: 178 KAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 1136 SYAA 1139
SYA
Sbjct: 238 SYAL 241
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-29
Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 1193 EFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
E +++T+ Y P L D++F ++ G + IVG GAGKS++L A+ L G I
Sbjct: 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI 56
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQS---PFLFEGSLRD----NLDPFHMNDDLKIWSVLE 1303
V G P+ R R VPQ F S+RD L H + S +
Sbjct: 57 RVFGK-----PLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG-HKG-LFRRLSKAD 109
Query: 1304 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
K V E +E VGL S GQ+Q + LARAL++ +L LDE A VD +T
Sbjct: 110 KAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQE 169
Query: 1364 ILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406
+ + +GMT++ + H + VL D +L+L+ +V G
Sbjct: 170 DIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR-TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-29
Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 15/233 (6%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+IE +N+T+ Y L DI+ ++E G ++G GAGKS++L A+ L G+I
Sbjct: 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSP---FLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1304
+ G + R R R VPQ F +++D + + + +K
Sbjct: 62 KIFGKPV---RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW-FRRLNKKDK 117
Query: 1305 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364
V E +E VG+E S GQ+Q + LARAL ++ +L LDE VD
Sbjct: 118 EKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177
Query: 1365 LQNAISSE-CKGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDE 1415
+ + + +G TV+ + H + V+ D ++ L + HL+ G P+ +L +E
Sbjct: 178 IYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTEE 229
|
Length = 254 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
VL +S + G V ++G GSGKSSLL ++ + L+ GSI G
Sbjct: 14 PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL 73
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSE-----TLKACTLDVDISLMVG 721
I+ +PQ P + SGTIR N+ DP YS+ L+ L + + G
Sbjct: 74 HDLRSRISIIPQDPVLFSGTIRSNL------DPFGEYSDEELWQALERVGLKEFVESLPG 127
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
G + E G NLS GQR L LARA+ S I +LD+ ++VD + ++ I
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA-LIQKTIRE-A 185
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816
T + H + I +D ++V+DKG+V S
Sbjct: 186 FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-28
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 55/205 (26%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 673
+ VL VS + G +A+IG GSGKS+L ILG + T G + G+
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 674 -------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+ Y+PQ + SG+I +NIL
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
SGGQR RL LARA+Y I +LD+ S +D + R + AI T
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAAGAT 148
Query: 787 RILCTHNVQAISAADMVVVMDKGQV 811
RI+ H + +++AD ++V++ G+V
Sbjct: 149 RIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-28
Identities = 69/212 (32%), Positives = 102/212 (48%), Gaps = 21/212 (9%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ L +S L G +A+IG GSGKS+L I+G T GS+ G
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 673 -----SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTL-DVDISLMVGGDMA 725
I Y+PQ + GT+ +NI FG+N DP+ E K + ++ + L G D
Sbjct: 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYD-T 446
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWILSNAIMGPHML 783
IG G LSGGQR R+ALARA+Y + +LD+ S +D + A L+NAI
Sbjct: 447 VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA---LANAIKALKAR 503
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815
T ++ TH + D ++V+ G++ G
Sbjct: 504 GITVVVITHRPSLLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 24/209 (11%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ L+ VSL + G VA+IG VGSGKS+LL + G T GS+ G
Sbjct: 14 NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP 73
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY- 726
+I YVPQ + GT+RDNI G L+A L +
Sbjct: 74 ADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLD 131
Query: 727 --IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN--AIMGPHM 782
IGE+G LSGGQR +ALARA+ + I +LD+ SA+D + ++G
Sbjct: 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-- 189
Query: 783 LQKTRILCTHNVQAISAADMVVVMDKGQV 811
KT I+ TH + D ++VMD G++
Sbjct: 190 --KTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-28
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 42/215 (19%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E +NV+ RY L+D++ IE G V ++G +G+GKS++L + L G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1252 VDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
+DG L + + LR R +V Q LF H+ +VLE
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALF----------PHL-------TVLENI---- 97
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
A+GL SG GQ+Q + LARAL VL LDE T+ +D T ++ +
Sbjct: 98 ---ALGL------SG-----GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143
Query: 1370 SSECK--GMTVITIAHRISTVLNM-DEILILDHGH 1401
S G+TV+ + H + + D +++L G
Sbjct: 144 KSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 110 bits (279), Expect = 8e-28
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 42/218 (19%)
Query: 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252
E +N+++ Y L D++ +IE G VGI+G GAGKS++L L L G+IL+
Sbjct: 1 EVENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1253 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1312
DG ++ + ++L + A VPQ+ +E
Sbjct: 59 DGKDLASLSPKELARKIAYVPQA-----------------------------------LE 83
Query: 1313 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISS 1371
+GL S G+RQ + LARAL + +L LDE T+++D A +L+ +
Sbjct: 84 LLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE-LLRR 142
Query: 1372 ECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+ G TV+ + H ++ D +++L G +V QG
Sbjct: 143 LARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-27
Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 29/242 (11%)
Query: 1191 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1247
+IE +NV+ + AL D++ I G GI+G +GAGKS++L + L
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 1248 GQILVDGLNIINT---PVRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1302
G + VDG ++ +R LR + ++ Q L ++ +N+ P L++ V
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP------LELAGVP 114
Query: 1303 -EKCH--VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+ V E +E VGL S GQ+Q + +ARAL + K+L DE T+ +D
Sbjct: 115 KAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 1360 QTA-SILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NP 1408
+T SIL+ I+ E G+T++ I H + V + D + +LD G LVE+G NP
Sbjct: 175 ETTQSILELLKDINRE-LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233
Query: 1409 QT 1410
+
Sbjct: 234 KH 235
|
Length = 339 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-26
Identities = 75/213 (35%), Positives = 104/213 (48%), Gaps = 32/213 (15%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ L+ VSL + G VA+IG +GSGKS+LL +LG T GS+ G
Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM----VGGD 723
+I YVPQ P + GT+RDNI G Y E L+A L + G D
Sbjct: 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLD 592
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
M IGE+G +LSGGQR +ALARA+ I +LD+ SA+D + L
Sbjct: 593 MQ-IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK-------DRL 644
Query: 784 Q-----KTRILCTHNVQAISAADMVVVMDKGQV 811
+ KT +L TH + D ++VMD G++
Sbjct: 645 KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 39/242 (16%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E +N+ Y S L ++ T+ G V ++GR GAGK+++L + L P G I
Sbjct: 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1252 VDGLNIINTPVRDL--RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1308
DG +I P + G VP+ +F ++ +NL L + K
Sbjct: 59 FDGRDITGLPPHERARAG-IGYVPEGRRIFPELTVEENL--------LLGAYARRRAKRK 109
Query: 1309 EEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECTA-- 1355
+E V E F +KE SG G++Q++ +ARAL+ K+L LDE +
Sbjct: 110 ARLERV-YELFPRLKERRKQLAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSEGL 163
Query: 1356 --NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
+ + ++ + E G+T++ + L + D +L+ G +V +G LL
Sbjct: 164 APKIVEEIFEAIR-ELRDE--GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
Query: 1413 QD 1414
D
Sbjct: 221 AD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-26
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 21/216 (9%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ VL +SL + G VA++G G GKS+LL + G I +G
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE 409
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM--- 724
+I+ V Q + S T+RDN+L P + E L V + ++ D
Sbjct: 410 AALRQAISVVSQRVHLFSATLRDNLLLAA---PNASDEALIEVLQQVGLEKLLEDDKGLN 466
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
A++GE G LSGG++ RL +ARA+ H + + +LD+ +DA+ R IL ++ H
Sbjct: 467 AWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQIL--ELLAEHAQN 524
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
KT ++ TH + + D + VMD GQ+ G+ +L
Sbjct: 525 KTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQEL 560
|
Length = 574 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-26
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 21/216 (9%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ +L +S L G + +IG GSGKS+L ++G T GS+ G
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405
Query: 673 -----SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTL-DVDISLMVGGDMA 725
I Y+PQ + GTI +NI FG+ DP+ E + + ++ + L G D
Sbjct: 406 EQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYD-T 464
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWILSNAIMGPHML 783
IGE G LSGGQR R+ALARA+Y + +LD+ S +D++ A L+ AI+
Sbjct: 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA---LAAAILAAKAR 521
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSAD 819
T ++ H A+++ D ++V+ G++ G +
Sbjct: 522 GGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 4e-26
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 6/219 (2%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
QG + + +T L I+F ++ G +GI+G +G+GKS++ L + P G
Sbjct: 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 1249 QILVDGLNIINTPVRDLRGRFA-VVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCH 1306
+ +DG ++ L GR +PQ LF+G++ +N+ F D K+
Sbjct: 392 SVRLDGADLRQWDREQL-GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450
Query: 1307 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364
V E + + G +T + E G + S GQRQ I LARAL ++ LDE +N+D++ +
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 1365 LQNAI-SSECKGMTVITIAHRISTVLNMDEILILDHGHL 1402
L AI +++ +G TV+ IAHR S + ++D+IL+L G +
Sbjct: 511 LAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 1192 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
+E +NV+ Y A AL DI+ ++E G V +VG +G GKS++L + L G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDN--LDPFHMNDDLKIWSVLE-KC 1305
+LVDG PV V Q L ++ DN L +L+ E +
Sbjct: 61 VLVDG-----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-----ELQGVPKAEARE 110
Query: 1306 HVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360
+E +E VGL F SG G RQ + LARAL VL LDE + +DA
Sbjct: 111 RAEELLELVGLSGFENAYPHQLSG-----GMRQRVALARALAVDPDVLLLDEPFSALDAL 165
Query: 1361 TASILQN---AISSECKGMTVITIAHRISTVLNM-DEILIL 1397
T LQ I E G TV+ + H I + + D +++L
Sbjct: 166 TREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-26
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 24/231 (10%)
Query: 1191 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
L+ +N+++ Y AL++++ IE G +GIVG +G+GKS++ L L G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1249 QILVDGLNIIN-TPVRDLRGRFAVVPQSPFL-------FEGSLRDNLDPFHMND-DLKIW 1299
IL+DG + + +V Q P+ L + L P ++ +I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 1300 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+L++ + L+ E S GQRQ I +ARAL+ K+L LDE T+ +D
Sbjct: 123 ELLDQVGLPPSF----LDRRPHE----LSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 1360 QT-ASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
A IL N + K G+T + I+H ++ V +M D I ++D+G +VE G
Sbjct: 175 SVQAQIL-NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224
|
Length = 252 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 1e-25
Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 48/331 (14%)
Query: 520 FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVIN---GLIDAFISIRRLTR-FLGC 575
G + +M +L + T AL + ++PL + +IN L A ++ RL +L
Sbjct: 399 TGAYLVMRGKLTLGQLITFNALLSYFLTPLEN---IINLQPKLQAARVANNRLNEVYLVD 455
Query: 576 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW-YCNNEEEQNVVLNQVSLCL 634
SE+ ++ ++ + ++N + + D + S+ Y +N +L+ +SL +
Sbjct: 456 SEFINKKKR-----TELNNLNGDIV-------INDVSYSYGYGSN------ILSDISLTI 497
Query: 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVP 681
S ++G GSGKS+L ++G G I +G I Y+PQ P
Sbjct: 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLSGGQ 738
+I SG+I +N+L G + S E AC + DI M G + E+G ++SGGQ
Sbjct: 558 YIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
+ R+ALARA+ S + +LD+ S +D + I++N + ++ KT I H +
Sbjct: 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL---NLQDKTIIFVAHRLSVAK 673
Query: 799 AADMVVVMDKGQVKWIGSSADLAVSLYSGFW 829
+D ++V+D G++ GS +L +GF+
Sbjct: 674 QSDKIIVLDHGKIIEQGSHDELL--DRNGFY 702
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-25
Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 31/247 (12%)
Query: 1191 LIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1241
L+ +N++ RY A+ D++F + G +G+VG +G+GKS++ L
Sbjct: 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339
Query: 1242 LTPICGGQILVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSL------RDNL-DPFHM 1292
L P G I+ DG ++ T +R LR R +V Q P+ SL D L +P +
Sbjct: 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY---SSLNPRMTVGDILAEPLRI 396
Query: 1293 NDDLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351
+ + V E +E VGL F+ S GQRQ + +ARAL K+L LD
Sbjct: 397 HGGGS--GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD 454
Query: 1352 ECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
E + +D AQ ++L++ G+T + I+H ++ V + D + ++ G +VE+G
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEEL--GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512
Query: 1407 NPQTLLQ 1413
+ + +
Sbjct: 513 PTEKVFE 519
|
Length = 539 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-25
Identities = 74/252 (29%), Positives = 116/252 (46%), Gaps = 29/252 (11%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+IEF+NV+ RY A+ D+N TIE G + ++G +G+GK++ L + RL G+I
Sbjct: 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--------DDLKIWSVL 1302
L+DG +I + +LR + V Q LF P H+ L W
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLF---------P-HLTVAENIATVPKLLGWDK- 107
Query: 1303 EKCH--VKEEVEAVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
E+ E ++ VGL+ + S GQ+Q + +ARAL +L +DE +D
Sbjct: 108 ERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1359 AQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
T LQ I K G T++ + H I L + D I ++D G +V+ P +L +
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227
Query: 1416 CSVF-SSFVRAS 1426
+ F F S
Sbjct: 228 ANDFVEDFFGES 239
|
Length = 309 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 25/232 (10%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ +N+T YK A+ D++ + G G++G GAGK++ L L G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
++G + I T + R PQ LF+ ++R++L + + + + +KEE
Sbjct: 61 INGYS-IRTDRKAARQSLGYCPQFDALFDELTVREHLRFYAR-----LKGLPKS-EIKEE 113
Query: 1311 VEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
VE +GL + + S G ++ + LA AL+ VL LDE T+ +D + +
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDE-------ILILDHGHLVEQGNPQTL 1411
+ I KG ++I H +MDE I I+ G L G+PQ L
Sbjct: 174 DLILEVRKGRSIILTTH------SMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IEF+ V+ Y L DI+ EGG IVG +GAGKS+++ + RL G IL
Sbjct: 4 IEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
+DG++I V DLR + +V Q P LFEG+++DN++ M K V+ +
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYL 115
Query: 1312 EAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
VGL + + S G+ Q + +AR L + +VL LDE T+ +D + I++ I
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 1371 --SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQ 1409
+TVI I H + + D L+ G LVE NPQ
Sbjct: 176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQ 224
|
Length = 241 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 12/230 (5%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE + +T + L ++ + G + I+G +G+GKS++L + L G++L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1252 VDGLNI---INTPVRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEKCH 1306
+DG +I + LR R ++ QS LF+ ++ +N+ P + L + E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-- 116
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
V E++EAVGL S G ++ + LARAL ++L DE TA +D + ++
Sbjct: 117 VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1367 NAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1413
+ I S + G+T I + H + T + D I +L G +V +G P+ L
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
L+E + V+ + + L DIN ++E G V I+G +G GKS++L + L G++
Sbjct: 3 LLEIEGVSKSF-GGVEV-LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKC 1305
L+DG PV V Q L ++ DN L+ +
Sbjct: 61 LLDG-----RPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE------ 109
Query: 1306 HVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360
KE +E VGL F + SG G RQ + +ARAL K+L LDE +DA
Sbjct: 110 RAKELLELVGLAGFEDKYPHQLSG-----GMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1361 TASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILD 1398
T LQ+ + + TV+ + H + + + D +++L
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS 205
|
Length = 248 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-25
Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 11/242 (4%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E +NV + L D+N IE G V ++G +G GKS++L + L G+IL
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
+DG ++ + P RG A+V Q+ L+ ++ +N+ F + + ++K VKE
Sbjct: 62 IDGRDVTDLPPEK-RGI-AMVFQNYALYPHMTVYENIA-FGLKLRGVPKAEIDK-RVKEV 117
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL--QNA 1368
+ +GLE + + S GQRQ + LARAL++ KV LDE +N+DA+ ++ +
Sbjct: 118 AKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177
Query: 1369 ISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFVRAS 1426
E G T I + H + + D I++++ G + + G P L + ++F + F+ +
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSP 237
Query: 1427 TM 1428
M
Sbjct: 238 PM 239
|
Length = 338 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 18/221 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL VS +P G VA++G GSGKS++L + ++ GSI G
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75
Query: 673 SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+I VPQ + + TI NI +G+ + + E KA + I G +GE+G
Sbjct: 76 AIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERG 135
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+ LSGG++ R+A+ARA+ I +LD+ SA+D R I + + +T I+
Sbjct: 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA--LRDVSKGRTTIVIA 193
Query: 792 HNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFWS 830
H + I AD ++V+ G++ G+ +L LY+ W
Sbjct: 194 HRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-25
Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 18/238 (7%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +N++ Y P AL D+N I G V I+G +GAGKS++L +L L G+IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1252 VDGLNIINTP---VRDLRGRFAVVPQSP------FLFEGSLRDNLDPFHMN---DDLKIW 1299
+G+ I +R LR ++ Q + E L L + + ++
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG--YTSTWRSLFGLF 120
Query: 1300 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
S +K + +E VG+ + + S GQ+Q + +ARAL++ K++ DE A++D
Sbjct: 121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180
Query: 1360 QTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
++A + + + + G+TVI H++ D I+ L G +V G L +
Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE 238
|
Length = 258 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 59/246 (23%), Positives = 117/246 (47%), Gaps = 36/246 (14%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS---ILNALFRLTPI 1245
+I+ +NV+ Y S AL +++F I G V I+G G+GKS+ IL L +
Sbjct: 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-- 62
Query: 1246 CGGQILVDGLNIINTPVRDLRGRFAVVPQSP--------------FLFEGSLRDNLDPFH 1291
G+I +DG+ I ++++R + ++ Q+P F E + P
Sbjct: 63 -SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKK 118
Query: 1292 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351
M D I + +K VG+E ++ + + S GQ+Q + +A L + +++ D
Sbjct: 119 MKD--IIDDLAKK---------VGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD 167
Query: 1352 ECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1409
E T+ +D + ++ + + + T+I+I H + + D++++ G L+ QG P+
Sbjct: 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPK 227
Query: 1410 TLLQDE 1415
+L ++
Sbjct: 228 EILNNK 233
|
Length = 271 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 39/239 (16%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+IE +N++ + L I+ ++E G V I+G +G+GKS++L L L G I
Sbjct: 2 MIEIKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1251 LVDGLNIINTP-VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC---- 1305
VDG ++ + + LR + +V Q LF H+ +VLE
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFP----------HL-------TVLENVTLAP 102
Query: 1306 -HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1352
V K E VGL S GQ+Q + +ARAL KV+ DE
Sbjct: 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162
Query: 1353 CTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1409
T+ +D + + + + + GMT+I + H + + D ++ +D G ++E+G P+
Sbjct: 163 PTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221
|
Length = 240 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+I F+NV+ Y P AL D++F I G V + G +GAGKS++L ++ G+I
Sbjct: 1 MIRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1251 LVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE---- 1303
LV+G ++ R+ LR + VV Q F + D +V E
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQD--------------FRLLPDR---TVYENVAL 102
Query: 1304 --------KCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351
++ V VGL+ + S G++Q + +ARA++ VL D
Sbjct: 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162
Query: 1352 ECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDE-ILILDHGHLV 1403
E T N+D + I++ G TV+ H + V M +L L+ G LV
Sbjct: 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-24
Identities = 92/472 (19%), Positives = 167/472 (35%), Gaps = 70/472 (14%)
Query: 358 IYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQV 417
+Y++ LA R G++ + D D +L +P + + +
Sbjct: 92 VYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVR----VIVPAGVALVVGAAAVAA 147
Query: 418 KFAF--------VSGLAITILLIPVNKWIANLIANATEKMMKQ-KDERIRRTGEILTHIR 468
+GL + + P ++ A A E+ + + + E + + L
Sbjct: 148 IAVLSVPAALILAAGLLLAGFVAP---LVSLRAARAAEQALARLRGELAAQLTDALDGAA 204
Query: 469 TLKMYG--------WEQIFSSWL-MKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT 519
L G E+ + R++ L + A +
Sbjct: 205 ELVASGALPAALAQVEEADRELTRAERRAAAATALGA-------ALTLLAAGLAVLGALW 257
Query: 520 FGLFALMGHQLD----AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 575
G A+ +L A +V LA F + P L + R+ L
Sbjct: 258 AGGPAVADGRLAPVTLAVLVLLPLAAFE----AFAALPAAAQQLTRVRAAAERIVEVLDA 313
Query: 576 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 635
+ E A + ++D + + VL+ VSL LP
Sbjct: 314 AGPVAEGSAPAAGAV---------GLGKPTLELRDLSAGY-----PGAPPVLDGVSLDLP 359
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------------IAYVPQVPW 682
G VA++G GSGKS+LL ++ G + G + G ++ Q
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAH 419
Query: 683 ILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
+ T+R+N+ + + + L+ L + + G +GE G LSGG+R R
Sbjct: 420 LFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQR 479
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LALARA+ + I +LD+ +DA+ A +L + + + +T +L TH+
Sbjct: 480 LALARALLADAPILLLDEPTEHLDAETADELLEDLLAA--LSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 22/213 (10%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
V+L+ +SL + G +V ++G GSGKS+L I + +G + G
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75
Query: 673 -SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTL---DVDISLMVGGDMAYI 727
+ V Q + + +IRDNI DP S ++A L IS + G +
Sbjct: 76 RQVGVVLQENVLFNRSIRDNIALA---DPGMSMERVIEAAKLAGAHDFISELPEGYDTIV 132
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
GE+G LSGGQR R+A+ARA+ H I + D+ SA+D + I+ N M +T
Sbjct: 133 GEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN--MHDICAGRTV 190
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
I+ H + + AD ++VM+KG++ GS +L
Sbjct: 191 IIIAHRLSTVKNADRIIVMEKGRIVEQGSHDEL 223
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-24
Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 4/218 (1%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+G + +NVT+ L I+F+++ G + I+G +G+GKS++ + + P G
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHV 1307
+ +DG ++ +PQ LF G++ +N+ F N D KI + V
Sbjct: 374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGV 433
Query: 1308 KEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
E + + G +T + G + S GQRQ I LARAL K++ LDE +N+D + L
Sbjct: 434 HELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQAL 493
Query: 1366 QNAISS-ECKGMTVITIAHRISTVLNMDEILILDHGHL 1402
NAI + + +G+TV+ I HR S + +D+IL+L G +
Sbjct: 494 ANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 1191 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPI 1245
+IE +NV+ + + AL D++ ++ G GI+GR+GAGKS+++ N L R T
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-- 58
Query: 1246 CGGQILVDGLNIINTP---VRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWS 1300
G +LVDG ++ +R R R ++ Q L ++ +N+ P L+I
Sbjct: 59 -SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP------LEIAG 111
Query: 1301 VLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
V K ++E V VGLE S GQ+Q + +ARAL + KVL DE T+
Sbjct: 112 V-PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1357 VDAQ-TASILQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQG------- 1406
+D + T SIL + G+T++ I H + V + D + +++ G +VE+G
Sbjct: 171 LDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
Query: 1407 NPQ 1409
NPQ
Sbjct: 231 NPQ 233
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-24
Identities = 68/229 (29%), Positives = 101/229 (44%), Gaps = 35/229 (15%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQ 1249
+IEF NV+ Y AALHD++ I G + + G +GAGK+++L L+ LTP GQ
Sbjct: 1 MIEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQ 58
Query: 1250 ILVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS------ 1300
+ + G ++ R LR R VV Q F + D ++
Sbjct: 59 VRIAGEDVNRLRGRQLPLLRRRIGVVFQD--------------FRLLPDRTVYENVALPL 104
Query: 1301 -VLEKC------HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353
V K V + VGLE S G++Q + +ARA++ S +L DE
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164
Query: 1354 TANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHG 1400
T N+D + IL +G TVI H +S V + ++ILD G
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 31/212 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L+ +SL + G +A++G G GK++LL I G G I G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 673 SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
+I V Q P + T+ +NI FG + ++ V + ++
Sbjct: 73 NIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN---R 126
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQ 784
Y E LSGGQ+ R+ALARA+ + +LD+ LSA+DA++ R L + L
Sbjct: 127 YPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKL-REELREELKELQRELG 181
Query: 785 KTRILCTHNVQ-AISAADMVVVMDKGQVKWIG 815
T I TH+ + A++ AD + VM++G++ +G
Sbjct: 182 ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 24/241 (9%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +N++ Y P+ AL D++ +I G V ++G +GAGKS++L L L G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1252 VDGLNIINTP---VRDLRGRFAVVPQSPFLFE----------GSL--RDNLDPFHMNDDL 1296
+DG +I +R LR + ++ Q L E G L R
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSL-----F 114
Query: 1297 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
++ EK +E VGL + S GQ+Q + +ARAL++ K++ DE A+
Sbjct: 115 GLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 1357 VDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQ 1413
+D ++ + + + +G+TVI H++ D I+ L G +V G P L
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234
Query: 1414 D 1414
+
Sbjct: 235 E 235
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-23
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 16/215 (7%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 668
+ + L V+ L G ++ + G GSGKS+LL+ I ++ G I
Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL 384
Query: 669 -HASGSIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+A V Q P++ S T+ +NI G+ + Q + ++ DI + G
Sbjct: 385 DSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTE 444
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+GE+GV LSGGQ+ R+++ARA+ ++I +LDD LSAVD + IL N +T
Sbjct: 445 VGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRT 502
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821
I+ H + A++ A ++VM G + G+ LA
Sbjct: 503 VIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 20/232 (8%)
Query: 1192 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1245
I+ +N+T Y P AL ++N IE G VG++G TG+GKS++ LN L + T
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-- 60
Query: 1246 CGGQILVDGLNIINTPV--RDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSV 1301
G+I++DG++I + V D+R + +V Q P LFE ++ ++ +N L +
Sbjct: 61 -SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEI 119
Query: 1302 LEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+ VK + VGL E + +S S GQ++ + +A + K+L LDE TA +D
Sbjct: 120 ENR--VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 1360 QTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1408
+ + N I + MT+I ++H + V + D I++++ G QG P
Sbjct: 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
Length = 287 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 18/228 (7%)
Query: 1191 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+IE +NV+ Y AL D+N IE G V IVG +G+GKS++LN L L G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 1249 QILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1302
++L++G ++ ++L R + V Q+ L ++ +N++ P +
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA----- 115
Query: 1303 EKCHVKEE--VEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+ E +E +GLE + + S S GQ+Q + +ARAL+ + K++ DE T N+D+
Sbjct: 116 GRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175
Query: 1360 QTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQ 1405
+TA + + K G T+I + H D ++ L G + E+
Sbjct: 176 KTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 27/244 (11%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+ +E +NV+ + A+ DI+ I+ G V ++G +G GK+++L + G
Sbjct: 3 KPALEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVL 1302
+IL+DG +I + P + +V QS LF P HM ++ LK+ L
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALF---------P-HMTVEENVAFGLKVRKKL 108
Query: 1303 EKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
+K +K VE VGLE F S GQ+Q + LARAL+ KVL LDE + +D
Sbjct: 109 KKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 1359 AQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
A+ ++ + G+T + + H L M D I +++ G + + G P+ + +
Sbjct: 169 AKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228
Query: 1416 CSVF 1419
+ F
Sbjct: 229 ATRF 232
|
Length = 352 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-23
Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 17/206 (8%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAY 676
++ LP G +A++G G+GK+SLLN++LG + GS+ +G +++
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 677 VPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735
V Q P + GT+RDN+L G + + + L+ + + L+ G IG++ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 795
GQ RLALARA+ + +LD+ +++DA + ++ A+ ++T ++ TH ++
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALN-AASRRQTTLMVTHQLE 545
Query: 796 AISAADMVVVMDKGQVKWIGSSADLA 821
++ D + VM GQ+ G A+L+
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAELS 571
|
Length = 588 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 4e-23
Identities = 58/226 (25%), Positives = 109/226 (48%), Gaps = 9/226 (3%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
++E ++T Y A+ D++F E G G++G GAGK+++L + L G++
Sbjct: 1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1251 LVDGLNIINTPVRDLRGRFAVVP-QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
+DG++ + P +R + V+ + + R+NL F + L K + E
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLS--RKEIKARIAE 116
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
+ + L ++ FS G +Q + +ARAL+ +L LDE T+ +D +T + I
Sbjct: 117 LSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 1370 SSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
+ K G VI +H + V + D +++L G +V +G+ + L
Sbjct: 177 -KQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 6e-23
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 21/207 (10%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SI 674
+ VL VS + G +A++G G+GKS+LL +ILG + T GSI G I
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 675 AYVPQ---VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDMAY--I 727
YVPQ + ++RD +L G + KA VD +L VG ++A I
Sbjct: 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI 130
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
GE LSGGQ+ R+ LARA+ D+ +LD+ + VD + I + T
Sbjct: 131 GE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE-LLRELRREGMTI 185
Query: 788 ILCTHNVQAISA-ADMVVVMDKGQVKW 813
++ TH++ + D V+++++ V
Sbjct: 186 LVVTHDLGLVLEYFDRVLLLNRTVVAS 212
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-23
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 22/212 (10%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L+ ++L + G VA++G G+GKS+L +L G I G
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 673 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETL----KACTLDVDISLMVGGDMAYIG 728
+A VPQ P + + ++ +NI +G+ P + E + +A IS + G Y+G
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGR---PDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
E+GV LSGGQR R+A+ARA+ + I +LD+ SA+DA+ + ++ A+ M +T +
Sbjct: 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE-SEQLVQQALETL-MKGRTTL 529
Query: 789 LCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ H + + AD +VVMD+G++ G+ A+L
Sbjct: 530 IIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 8e-23
Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 51/234 (21%)
Query: 1191 LIEFQNVTMRY-------KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1243
L+E +N+ + K A+ ++F+I+ G +G+VG +G GKS++ + L
Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63
Query: 1244 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
G+IL +G +I ++ + + E
Sbjct: 64 EPTSGEILFEGKDIT--------------------------------KLSKEER----RE 87
Query: 1304 KCHVKEEVEAVGLETFVKESG-ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT- 1361
+ V E +E VGL S GQRQ I +ARAL + K++ DE + +D
Sbjct: 88 R--VLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ 145
Query: 1362 ASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
A IL + E G+T + I+H +S V + D I ++ G +VE G + +
Sbjct: 146 AQILNLLKDLQEE-LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198
|
Length = 268 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 8e-23
Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 42/249 (16%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+IEF+NV+ + P+ LH+I+ I+ G V I+G +G+GKS++L + +L I G +
Sbjct: 1 MIEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1251 LVDGLNIINTP---VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC-- 1305
+VDGL +N P R +R +V Q +LF H+ + LE
Sbjct: 59 IVDGLK-VNDPKVDERLIRQEAGMVFQQFYLFP----------HL-------TALENVMF 100
Query: 1306 ---HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1350
V KEE E VGL S GQ+Q + +ARAL K++
Sbjct: 101 GPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
Query: 1351 DECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNMDEILI-LDHGHLVEQGNP 1408
DE T+ +D + +L+ +GMT++ + H I + LI +D G + E G+P
Sbjct: 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220
Query: 1409 QTLLQDECS 1417
Q L+++ S
Sbjct: 221 QVLIKNPPS 229
|
Length = 240 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-22
Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 30/292 (10%)
Query: 1142 VSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEEL----CGYQSLSPDWPFQGLIEFQNV 1197
+++L +SS + VSL+R+ ++ EEL +++ P I N
Sbjct: 590 LNILPMVISSIVQAS---VSLKRLRIFLS--HEELEPDSIERRTIKPGEGNS--ITVHNA 642
Query: 1198 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1257
T + LP L+ I F+I G V +VG+ G GKSS+L+AL G +
Sbjct: 643 TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV------- 695
Query: 1258 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--G 1315
++G A VPQ ++ SLR+N+ ++ VLE C + ++E + G
Sbjct: 696 ------HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG 749
Query: 1316 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSE-- 1372
T + E G++ S GQ+Q + LARA+ ++ + D+ + VDA I ++ I E
Sbjct: 750 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809
Query: 1373 CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424
K T I + H IS + +D I+++ G + E G+ Q LLQ + + F+ F+R
Sbjct: 810 LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGA-FAEFLR 860
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 16/200 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
VL VS L G + A++G GSGKS+++ + G + G
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88
Query: 674 -IAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
++ V Q P + + +++DNI +G + E + IS + G +GEKG
Sbjct: 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG 148
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
LSGGQ+ R+A+ARA+ + +LD+ SA+DA+ + + A+ ++T ++
Sbjct: 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQQVQQALYDWPE-RRTVLVIA 206
Query: 792 HNVQAISAADMVVVMDKGQV 811
H + + AD ++V+D G++
Sbjct: 207 HRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 1e-22
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 48/222 (21%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------ 672
L +SL + +G VA++G G GKS+LL I G T G + G
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP 71
Query: 673 --SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSET-------LKACTLDVDISLM 719
YV Q +PW+ T+ DN+ G +E L+ L
Sbjct: 72 GPDRGYVFQQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLS------ 122
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
G + AY + LSGG R R+ALARA+ D+ +LD+ SA+DA + +
Sbjct: 123 -GFENAYPHQ----LSGGMRQRVALARALAVDPDVLLLDEPFSALDAL------TREQLQ 171
Query: 780 PHML------QKTRILCTHNV-QAISAADMVVVMDK--GQVK 812
+L KT +L TH++ +A+ AD VVV+ G++
Sbjct: 172 EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 1e-22
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 36/208 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------I 674
VL ++L + KG VA++G G GKS+LL I G T G + G I
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDI 74
Query: 675 AYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG----GDMA 725
YV Q +PW+ T+ DN+ G +S +E + ++ L +VG D
Sbjct: 75 GYVFQEDALLPWL---TVLDNVALGLELRGKSKAEA-RERAKEL---LELVGLAGFED-K 126
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
Y + LSGG R R+A+ARA+ + +LD+ A+DA R L + ++ + ++
Sbjct: 127 YPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT-REELQDELL--RLWEE 179
Query: 786 TR---ILCTHNVQ-AISAADMVVVMDKG 809
TR +L TH+V A+ AD VVV+
Sbjct: 180 TRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 2e-22
Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 42/255 (16%)
Query: 1191 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---- 1244
L+E +N+++ + A+ ++F ++ G +GIVG +G+GKS + A+ L P
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 1245 -ICGGQILVDGLNIINTP---VRDLRGR-FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1299
I GG+IL DG ++++ +R +RG+ A++ Q P +L+P D I
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPVMTIGDQ-IA 112
Query: 1300 SVLEKCHV---KEEVEAVGLETFVKESGIS------------FSVGQRQLICLARALLKS 1344
VL K+E + +E + GI S G RQ + +A AL +
Sbjct: 113 EVLRLHGKGLSKKEAKERAIELL-ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 1345 SKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDH 1399
K+L DE T +D AQ +L+ + E KG +I I H + V + D + ++
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKE-LQRE-KGTALILITHDLGVVAEIADRVAVMYA 229
Query: 1400 GHLVEQGNPQTLLQD 1414
G +VE+G + + ++
Sbjct: 230 GRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 3e-22
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IEF NVT Y P+ AAL IN +I G V +VG +GAGKS++L +++ G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1252 VDGLNIINTPVRD---LRGRFAVVPQ-SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1307
V+G ++ + R LR + VV Q L + ++ +N+ F + + K V
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENV-AFALEVTGVPPREIRK-RV 117
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+E VGL + S G++Q + +ARA++ S +L DE T N+D T + N
Sbjct: 118 PAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 1368 AI-SSECKGMTVITIAHRISTVLNMDE-ILILDHGHL 1402
+ G TV+ H V ++ L+ G L
Sbjct: 178 LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-22
Identities = 115/446 (25%), Positives = 192/446 (43%), Gaps = 67/446 (15%)
Query: 409 ALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIR 468
L LLY V + G+A + + + ++ +A ++ + + + TG ++ ++
Sbjct: 286 LLMLLYDPV-LTLI-GIAFAAINVLALQLVSRRRVDANRRLQQ---DAGKLTGVAISGLQ 340
Query: 469 ---TLKMYGWE-QIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT----- 519
TLK G E FS W + K L+ ++ L PTL +
Sbjct: 341 SIETLKASGLESDFFSRWA----GYQAKLLNAQQELGVLTQIL-GVLPTLLTSLNSALIL 395
Query: 520 -FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS-E 577
G +M QL M+ +L +S + P+N+ L + + RL L +
Sbjct: 396 VVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455
Query: 578 YKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKG 637
E E+A + S S LS + V +++ T + + E ++ N SL L G
Sbjct: 456 PLLEEEEAPAAGSEPSPRLSGY------VELRNITFGY---SPLEPPLIEN-FSLTLQPG 505
Query: 638 SLVAVIGEVGSGKSS-------LLNSILGEMM--------LTHGSIHASGSIAYVPQVPW 682
VA++G GSGKS+ L GE++ + + + S+A V Q +
Sbjct: 506 QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL--ANSVAMVDQDIF 563
Query: 683 ILSGTIRDNILFGKNYDPQSYSETL-----KACTLDVDISLMVGGDMAYIGEKGVNLSGG 737
+ GT+RDN+ +DP L A DV I+ GG A + E G NLSGG
Sbjct: 564 LFEGTVRDNLTL---WDPTIPDADLVRACKDAAIHDV-ITSRPGGYDAELAEGGANLSGG 619
Query: 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHNV 794
QR RL +ARA+ I +LD+ SA+D + + I N L++ T I+ H +
Sbjct: 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN-------LRRRGCTCIIVAHRL 672
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL 820
I D ++V+++G+V G+ +L
Sbjct: 673 STIRDCDEIIVLERGKVVQRGTHEEL 698
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 5e-22
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L+ VS + G + ++G G+GK++LL + G + T G I G
Sbjct: 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVR 77
Query: 673 -SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMVGGD 723
I YVPQ P + T+R+N+ F K + E L+ L+ + V
Sbjct: 78 RRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT- 136
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHM 782
LSGG + RL++A A+ H ++ +LD+ S +D + +R + +
Sbjct: 137 ----------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLRELAKE 185
Query: 783 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T +L TH ++ A D V++++ G++ G+ +L
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224
|
Length = 293 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 5e-22
Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 22/224 (9%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ +N+T RY AL ++ T+ G G++G GAGK++++ L LTP G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC---HV 1307
+DG +++ P + LR R +PQ ++ ++R+ LD ++ + L+ V
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLD--YI-------AWLKGIPSKEV 107
Query: 1308 KEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
K V E V L K+ S S G R+ + +A+AL+ +L +DE TA +D +
Sbjct: 108 KARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERI 167
Query: 1364 ILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+N +S + VI H + V ++ +++ +L+ G LV +G
Sbjct: 168 RFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 8e-22
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 1192 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
IE +N++ Y AL ++ +IE G V IVG +G+GKS++LN L L G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1250 ILVDGLNIINTPVRDL----RGRFAVVPQS----PFLFEGSLRDNLD-PFHMNDDLKIWS 1300
+ VDG +I ++L R V QS P L + +N++ P + K
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL---TALENVELPLLLAGVPK-KE 116
Query: 1301 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360
E+ E +E VGL + S GQ+Q + +ARAL K++ DE T N+D++
Sbjct: 117 RRERAE--ELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSE 174
Query: 1361 TASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1402
T + + K G T++ + H D I+ L G +
Sbjct: 175 TGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 9e-22
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 6/207 (2%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
A+ +NF + G G +G GAGK++ + L L G V G +++ P R +R
Sbjct: 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP-RKVRR 66
Query: 1268 RFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1326
+VPQ + E + R+NL+ L E+ +E +E L +
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLP-KDEAEE-RAEELLELFELGEAADRPVGT 124
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRI 1385
+S G R+ + +A +L+ VL LDE T +D +T + + I + + G+T++ H +
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184
Query: 1386 STVLNM-DEILILDHGHLVEQGNPQTL 1411
+ D I I+DHG ++ +G P+ L
Sbjct: 185 EEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-21
Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 43/189 (22%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
L+ VSL L G +VA++G GSGKS+LL +I G + T G I G +
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG-----KDIAK 65
Query: 683 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742
+ +R I Y PQ LSGGQR R+
Sbjct: 66 LPLEELRRRIG----YVPQ--------------------------------LSGGQRQRV 89
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAAD 801
ALARA+ D+ +LD+ S +D +L + +T I+ TH+ A AAD
Sbjct: 90 ALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIVTHDPELAELAAD 148
Query: 802 MVVVMDKGQ 810
V+V+ G+
Sbjct: 149 RVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-21
Identities = 56/277 (20%), Positives = 106/277 (38%), Gaps = 11/277 (3%)
Query: 281 YICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG--YVLAIALGLTSILKSFFDTQ 338
+ LL ++ + PLLL + + L G+G LAI L +L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 339 YSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHD 398
+ +L ++R + + ++ L + ++ S GE+ + ++ D + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 399 AWSLPFQIGVALYLL--YTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDER 456
+ V +++ Y K V LAI LLI ++ +A + K K +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVL-LAILPLLILLSAVLAKKLRKLNRKEQKAYAKA 179
Query: 457 IRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF---WATTPT 513
E L+ IRT+K +G E+ ++ E + K + F +
Sbjct: 180 GSVAEESLSGIRTVKAFGREEYELE--RYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 514 LFSL-FTFGLFALMGHQLDAAMVFTCLALFNSLISPL 549
++L FG + ++ L VF L+L L PL
Sbjct: 238 SYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IEF+NVT RY A++++N I G + ++G +G+GK++ + + RL G+I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDN--LDPFHMNDDLKIWSVLE-KCHV 1307
+DG +I +LR + V Q LF ++ +N L P L W + +
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVP-----KLLKWPKEKIRERA 114
Query: 1308 KEEVEAVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
E + VGL+ F S GQ+Q + +ARAL +L +DE +D T L
Sbjct: 115 DELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 1366 QNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
Q + G T++ + H I + D I I+ +G +V+ G P +L
Sbjct: 175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 1e-21
Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 39/245 (15%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
++E +N++ Y AL ++ +E G V ++GR GAGK+++L + L G+I
Sbjct: 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 1251 LVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEKCH 1306
+ DG +I P R G A VP+ +F ++ +NL + D +
Sbjct: 61 IFDGEDITGLPPHERARLG-IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ------- 112
Query: 1307 VKEEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
+ ++E V E F +KE SG G++Q++ +ARAL+ K+L LDE +
Sbjct: 113 -ERDLEEV-YELFPRLKERRNQRAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSE 165
Query: 1356 ----NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1410
+ + ++ GMT++ + L + D +L++G +V G
Sbjct: 166 GLAPKIVEEIFEAIKELRKEG--GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223
Query: 1411 LLQDE 1415
LL D
Sbjct: 224 LLADP 228
|
Length = 237 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 1e-21
Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 26/239 (10%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+I F+NV+ +Y+ L D++F I G IVG G+GKS+I + + + G+I
Sbjct: 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGS---------LRDNLDPFHMNDDLKIWS 1300
+ I + LR +V Q+P F GS L ++ P+
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY---------- 116
Query: 1301 VLEKCH--VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
++ H V E ++ V + + S GQ+Q + +A L + V+ LDE T+ +D
Sbjct: 117 --DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 1359 AQTASILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
L + + +T+I+I H +S + D +++++ G + ++G P +
Sbjct: 175 PDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 17/220 (7%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ ++T Y L DI+ ++ G G +G GAGK++ + + L G+I
Sbjct: 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVK 1308
DG + + R + ++P + NL +L++ + L K +
Sbjct: 59 FDGKSYQKN--IEALRRIGALIEAPGFY-----PNLTARE---NLRLLARLLGIRKKRID 108
Query: 1309 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
E ++ VGL+ K+ FS+G +Q + +A ALL + +L LDE T +D L+
Sbjct: 109 EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELREL 168
Query: 1369 ISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
I S G+TV+ +H +S + + D I I++ G L+E+G
Sbjct: 169 ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 3e-21
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 8/221 (3%)
Query: 1191 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+I +T R++ A+ ++FT++ G G++G GAGK++ L L L G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHV 1307
VDG +++ P + R R V S L++ + R+NL+ F LK + + +
Sbjct: 61 FATVDGFDVVKEP-AEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR--L 117
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+E + +G+E + FS G RQ + +ARAL+ VL LDE T +D L+
Sbjct: 118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
Query: 1368 AISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
I G ++ H + V + D +++L G +V +G
Sbjct: 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 4e-21
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 42/241 (17%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1247
+I ++++ RY + AL D++F++ G V IVG G+GKS++ LN L
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---A 61
Query: 1248 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDDLKIWSVLEK 1304
G I V G+ + V D+R + +V Q+P DN F + DD+ LE
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNP--------DN--QFVGATVQDDVAF--GLEN 109
Query: 1305 C---------HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
V + + VG+E F+ S GQ+Q + +A L ++ LDE T+
Sbjct: 110 IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169
Query: 1356 NVDAQ-------TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1408
+D + T L+ KG+TV++I H + D +++++ G ++E+G P
Sbjct: 170 MLDPRGRREVLETVRQLKEQ-----KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224
Query: 1409 Q 1409
+
Sbjct: 225 E 225
|
Length = 279 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 5e-21
Identities = 70/250 (28%), Positives = 116/250 (46%), Gaps = 48/250 (19%)
Query: 1192 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
IE +N++ + AL++++ I G G++G +GAGKS+++ + L G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1250 ILVDGLNIINTPVRDL---RGRFAVVPQSPFLFEGSLRDNLDPFHMN--------DD--- 1295
+LVDG ++ ++L R + ++ Q H N D+
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQ----------------HFNLLSSRTVFDNVAL 105
Query: 1296 -LKI--WSVLE-KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351
L++ E K V E +E VGL S GQ+Q + +ARAL + KVL D
Sbjct: 106 PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD 165
Query: 1352 ECTANVDAQ-TASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG- 1406
E T+ +D T SIL+ I+ E G+T++ I H + V + D + ++D G LVEQG
Sbjct: 166 EATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
Query: 1407 ------NPQT 1410
+P+
Sbjct: 225 VSEVFSHPKH 234
|
Length = 343 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 6e-21
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 17/215 (7%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ ++L+ VSL + G VA++G GSGKS+LL +LG GS+ G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+ V Q ++SG+I +NI G E + L DI M G
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTV 581
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
I E G LSGGQR RL +ARA+ I + D+ SA+D + I+S ++ L+ T
Sbjct: 582 ISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA-IVSESLER---LKVT 637
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821
RI+ H + I AD + V+D G+V G+ +L
Sbjct: 638 RIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 6e-21
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 32/246 (13%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
++E +N++ Y P+ AL +IN I G V I+G +GAGKS++L + RL G I
Sbjct: 1 MLEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1251 LVDGLNIINTPVRDLRG----------RFAVVPQSPFL---------FEGSLRDNLDPFH 1291
L++G +I + LR + ++ + L ++ + R L F
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1292 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351
D + S LE+ VGL + S GQ+Q + +ARAL + ++ D
Sbjct: 120 EEDKERALSALER---------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170
Query: 1352 ECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1408
E A++D +T+ + + + K G+TVI H++ D I+ L G +V G P
Sbjct: 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230
Query: 1409 QTLLQD 1414
L +
Sbjct: 231 SELDDE 236
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 7e-21
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 19/210 (9%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ V+L +P GSLVA++G GSGKS+LL I G G I +G
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRK 73
Query: 674 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
I +V Q + T+RDNI FG + + + + ++ + L+ + +G++
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFG--LEIRKHPKAKIKARVEELLELV---QLEGLGDRYP 128
Query: 733 N-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
N LSGGQR R+ALARA+ + +LD+ A+DA+V + + S + T + T
Sbjct: 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188
Query: 792 HN-VQAISAADMVVVMDKGQVKWIGSSADL 820
H+ +A+ AD +VVM G+++ IGS ++
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 8e-21
Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 17/210 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L+ +SL + G VA++G GSGKS+L+N I G I G
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 673 SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+A V Q + + TI +NI +G+ D L A + + G IGE
Sbjct: 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
GV LSGGQR RLA+ARA+ + I +LD+ SA+D + R + A + M +T ++
Sbjct: 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV--QAALERLMQGRTTLVI 524
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL 820
H + I AD +VVMD G++ G+ +L
Sbjct: 525 AHRLSTIEKADRIVVMDDGRIVERGTHNEL 554
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-20
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 52/205 (25%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 673
E++ VL +SL L +G +A++G GSGKS+LL + G++ G I G
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE 70
Query: 674 ------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
I+ + Q P++ T+R+N+
Sbjct: 71 KALSSLISVLNQRPYLFDTTLRNNL----------------------------------- 95
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
G SGG+R RLALAR + + I +LD+ +D R +LS ++ + KT
Sbjct: 96 ---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS--LIFEVLKDKTL 150
Query: 788 ILCTHNVQAISAADMVVVMDKGQVK 812
I TH++ I D ++ ++ G++
Sbjct: 151 IWITHHLTGIEHMDKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 21/250 (8%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
LIE + VT + L ++ + G + I+G +G+GKS++L + L G+I
Sbjct: 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1251 LVDGLNIINTPVRDL---RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1306
L+DG +I +L R R V+ Q LF ++ +N+ F + + K+ L +
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV-AFPLREHTKLPESLIREL 124
Query: 1307 VKEEVEAVGLETFVKE------SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360
V ++E VGL + SG G R+ + LARA+ ++L LDE T+ +D
Sbjct: 125 VLMKLELVGLRGAAADLYPSELSG-----GMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 1361 TASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECS 1417
+A ++ I + G+TVI + H + ++L + D + +L G ++ +G P+ LL +
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDP 239
Query: 1418 VFSSFVRAST 1427
F
Sbjct: 240 WVRQFFNGIR 249
|
Length = 263 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-20
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 1233 SSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLF-EGSLRDNLDPF 1290
S++L + L G IL+DG + R LR R VV Q P LF E ++R+NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1291 HMNDDLK--IWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICLARALLKSSKV 1347
+ + LE+ VGL F+ +E + S GQ+Q + +ARALLK K+
Sbjct: 61 LRDKEADARAEEALER---------VGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKL 111
Query: 1348 LCLDECTA 1355
L LDE TA
Sbjct: 112 LLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-20
Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 21/237 (8%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICGG 1248
+EF++V+ Y S AL+DI+F+I G+ ++G G+GKS+I +N L
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-------NDDLKIWS 1300
+I VDG+ + V D+R + +V Q+P F G+ + F + + +KI
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI-- 123
Query: 1301 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-A 1359
V++ + VG+ ++ + S GQ+Q + +A L K++ LDE T+ +D A
Sbjct: 124 ------VRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 1360 QTASILQNAIS-SECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
IL+ + +TVI+I H I D++L+LD G L+ QG+P +
Sbjct: 178 GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKV 234
|
Length = 282 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +N+ + L I+ T++ G V I+G +G+GKS++L + L G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1252 VDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV-- 1307
+DGL + + + +LR + +V Q LF H+ +VLE +
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFP----------HL-------TVLENITLAP 101
Query: 1308 -------KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1352
K E E VGL S GQ+Q + +ARAL + KV+ DE
Sbjct: 102 IKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161
Query: 1353 CTANVDAQTA-----SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1402
T+ +D + + A GMT++ + H + + D ++ +D G +
Sbjct: 162 PTSALDPELVGEVLDVMKDLAEE----GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 3e-20
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 26/229 (11%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ VL+ ++L + G + ++G GSGKS+L + HG + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQ-SYSETLKACTL----DVDISLMVGG 722
+ V Q + S +IRDNI +P + + A L D L G
Sbjct: 527 AWLRRQMGVVLQENVLFSRSIRDNIALC---NPGAPFEHVIHAAKLAGAHDFISELPQGY 583
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
+ +GEKG NLSGGQR R+A+ARA+ I + D+ SA+D + I+ N M
Sbjct: 584 NTE-VGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN--MREIC 640
Query: 783 LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFW 829
+T I+ H + + A D ++V++KGQ+ G +L LY+ W
Sbjct: 641 RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLW 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 5e-20
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 35/219 (15%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
VL V+L + G V ++G G GKS+LL I G T G I G
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75
Query: 674 -IAYVPQVPWIL--SGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGD 723
IA V Q + L T+ +NI FG K + E K L+
Sbjct: 76 GIAMVFQ-NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE---------- 124
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 782
+ K + LSGGQR R+ALARA+ +++LD+ LS +DA++ R ++ + I H
Sbjct: 125 -HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL-RVLMRSEIKKLHER 182
Query: 783 LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T I TH+ V+A++ AD +VVM+ G+++ +G+ +L
Sbjct: 183 LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 6e-20
Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 48/275 (17%)
Query: 1161 SLERVLEY---MDVPQEELCGYQSLSPDWPFQ----GLIEFQNVTMRYKPSLPAA---LH 1210
+L R+ E+ ++ Q + F I +N+++R P L
Sbjct: 355 TLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLR----TPDGQTLLS 410
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270
++NF + G ++ I G +GAGK+S+L AL L P G+I + P
Sbjct: 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI--------SMPADS---ALL 459
Query: 1271 VVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESG--- 1324
+PQ P+L +G+LR+ L + D ++ +VL K GL +
Sbjct: 460 FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV---------GLGDLAERLDEED 510
Query: 1325 ---ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITI 1381
S G++Q + AR LL K + LDE T+ +D +T L + E TVI++
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570
Query: 1382 AHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1416
HR T+ N + L++ Q L
Sbjct: 571 GHR-PTLWNFHSRQL----ELLDDAGGQNLKPPAL 600
|
Length = 604 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
+L+ +S +PKG + ++G GSGKS+LL + G + G + G
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 674 ----IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETL-KACTLDVDISL-MVGGDMAY 726
+AYVPQ P G T+ + +L G+ Y K V+ +L ++G + +
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGR-YPHLGLFGRPSKEDEEIVEEALELLG--LEH 130
Query: 727 IGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+ ++ V+ LSGG+R R+ +ARA+ + I +LD+ S +D +L
Sbjct: 131 LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGL 190
Query: 786 TRILCTHNV-QAISAADMVVVMDKGQVKWIGS 816
T ++ H++ A AD ++++ G++ G+
Sbjct: 191 TVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-19
Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 30/258 (11%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+ F +VT R+ L +NF++ G +V ++G +G+GKS+IL L L PI GQI
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 1252 VDGLNIINTP-------------VRDLRGRFAVVPQSPFLF-EGSLRDN--LDPFHMNDD 1295
V+G + + P +R +R + +V QS LF ++ DN P +
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--- 115
Query: 1296 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
L + + E ++ VGL S GQ+Q + +ARAL KV+ DE T+
Sbjct: 116 LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTS 175
Query: 1356 NVDAQTASILQNAI---SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1411
+D + + N I +SE +T++ + H + D + D G +VEQG P +
Sbjct: 176 ALDPELVGEVLNVIRRLASEHD-LTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
Query: 1412 L----QDECSVFSSFVRA 1425
++ F S V A
Sbjct: 235 FRQPKEERTREFLSKVIA 252
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1246
IE +++ + Y AL DIN I ++G +G GKS++L L R L P
Sbjct: 8 IEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 1247 GGQILVDGLNI--INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1304
G++L+DG NI V +LR R +V Q P F S+ DN+ L++ + +K
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV-----AYGLRLHGIKDK 120
Query: 1305 CHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
+ E VE L VK +S + S GQ+Q +C+ARAL +VL +DE T+
Sbjct: 121 -ELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1357 VDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQT 1410
+D + ++ I+ K T++ + H R+S D G LVE G
Sbjct: 180 LDPISTLKIEELITELKKKYTIVIVTHNMQQAARVS-----DYTAFFYLGELVEFGPTDK 234
Query: 1411 L 1411
+
Sbjct: 235 I 235
|
Length = 253 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 1e-19
Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 28/243 (11%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E + +T R+ L AL D++F++ G G++G GAGK+++ N + G +L
Sbjct: 1 LEVRGLTKRFG-GL-VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL 58
Query: 1252 VDGLNIINTPVRDLRGR-----FAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEK 1304
DG +I P ++ F Q P LF ++ +N+ + +
Sbjct: 59 FDGEDITGLPPHEIARLGIGRTF----QIPRLFPELTVLENVMVAAQARTGSGLLLARAR 114
Query: 1305 CHVKEEVEA-------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
+E E VGL S GQ++ + +ARAL K+L LDE A +
Sbjct: 115 REEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 1358 D----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
+ + A +++ +G+TV+ + H + V+++ D + +LD G ++ +G P +
Sbjct: 175 NPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231
Query: 1413 QDE 1415
+
Sbjct: 232 NNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 2e-19
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 53/204 (25%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
VL+ +SL + G +V ++G G+GKS+LL ++ G + + G I G
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 674 ----IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
IAYVPQ L+ +A++ +
Sbjct: 71 LARKIAYVPQA--------------------------LELL------------GLAHLAD 92
Query: 730 KGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
+ N LSGG+R R+ LARA+ I +LD+ S +D +L KT +
Sbjct: 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152
Query: 789 LCTHNV-QAISAADMVVVMDKGQV 811
+ H++ A AD V+++ G++
Sbjct: 153 MVLHDLNLAARYADRVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-19
Identities = 61/189 (32%), Positives = 107/189 (56%), Gaps = 14/189 (7%)
Query: 1248 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH- 1306
G+IL+DG++I + ++DLR F++V Q P LF S+ +N+ +D V C
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK--FGKEDATREDVKRACKF 1334
Query: 1307 --VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
+ E +E++ +T V G S S GQ+Q I +ARALL+ K+L LDE T+++D+ +
Sbjct: 1335 AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394
Query: 1363 SILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDH----GHLVE-QGNPQTLLQDE 1415
+++ I + T+ITIAHRI+++ D+I++ ++ G V+ G + LL +
Sbjct: 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQ 1454
Query: 1416 CSVFSSFVR 1424
V+ +V+
Sbjct: 1455 DGVYKKYVK 1463
|
Length = 1466 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-19
Identities = 71/242 (29%), Positives = 125/242 (51%), Gaps = 28/242 (11%)
Query: 1192 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPI 1245
I+F+NV Y P P L +I+F +E G+ V +VG TG+GKS+++ NAL + +
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-- 60
Query: 1246 CGGQILVDGLNII----NTPVRDLRGRFAVVPQSP--FLFEGSLRDNLD--P--FHMNDD 1295
G I + G +I N ++ LR + ++V Q P LFE ++ +++ P F ++D
Sbjct: 61 -SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED 119
Query: 1296 LKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354
K + ++ VGL E + +S S GQ + + +A + ++LCLDE
Sbjct: 120 EA------KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 1355 ANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412
A +D + ++Q + G TVI + H + V D++L+L+HG L++ +P+ +
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233
Query: 1413 QD 1414
D
Sbjct: 234 SD 235
|
Length = 287 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-19
Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 12/233 (5%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE N++ R+ AL D+N + G+ V ++G +G+GKS++L + L G+I
Sbjct: 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
++G + RD + F V Q LF+ ++RDN+ F + + K K V+E
Sbjct: 59 LNGQDATRVHARDRKIGF--VFQHYALFKHLTVRDNI-AFGL-EIRKHPKAKIKARVEEL 114
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN--- 1367
+E V LE S GQRQ + LARAL +VL LDE +DA+ L++
Sbjct: 115 LELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLR 174
Query: 1368 AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF 1419
+ E TV + H + + D I+++ +G + + G+P + + F
Sbjct: 175 KLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 4e-19
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 25/213 (11%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673
L ++ +P G VA++G GSGKS++ N + + G I G
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKA----CTLDVDISLMVGGDMAYIGE 729
+A V Q + + TI +NI + + + S + +A +D I+ M G IGE
Sbjct: 419 VALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAMDF-INKMDNGLDTVIGE 476
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR-- 787
GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I + A+ LQK R
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA-AL---DELQKNRTS 532
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
++ H + I AD ++V++ G++ G+ A+L
Sbjct: 533 LVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
|
Length = 582 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 85.9 bits (214), Expect = 4e-19
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 35/193 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
+ L+ +SL + KG + ++G G+GK++L+ ILG + G I
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI-------------- 57
Query: 683 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG---VNLSGGQR 739
+ GK D + E +K I + Y + LSGG +
Sbjct: 58 ---------KVLGK--DIKKEPEEVKR-----RIGYLPEEPSLYENLTVRENLKLSGGMK 101
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
RLALA+A+ H ++ +LD+ S +D + R + KT +L +H ++
Sbjct: 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLSSHILEEAER 160
Query: 800 -ADMVVVMDKGQV 811
D V +++ G++
Sbjct: 161 LCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 4e-19
Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 11/230 (4%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1247
+I +NV+ Y PA L +IN I+ G +GI+G+ G+GKS++ LN L R
Sbjct: 1 MIRLENVSYSYPDGTPA-LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---K 56
Query: 1248 GQILVDGLNIIN-TPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1305
G++LV G++ + + ++ +R +V Q+P F G + D ++L + + +
Sbjct: 57 GKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEE-DLAFGPENLCLPPIEIRK 115
Query: 1306 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SI 1364
V + +GLE + S + S GQ Q + LA L + L DE T+ +D + ++
Sbjct: 116 RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
Query: 1365 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414
L+ KG T++ I H + + + D I+++D G +V +G P+ +L D
Sbjct: 176 LERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 5e-19
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 23/208 (11%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672
VL +SL + KG + A+IG G+GKS+LL +ILG + + G I G
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKR 74
Query: 673 -SIAYVPQ---VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDMAY 726
I YVPQ V T++D +L G+ + K VD +L VG D+
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD 134
Query: 727 --IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
IGE LSGGQ+ R+ LARA+ D+ +LD+ + VD + + + +
Sbjct: 135 RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK-EIYDLLKELRQEG 189
Query: 785 KTRILCTHNVQAISA-ADMVVVMDKGQV 811
KT ++ TH++ + A D V+ +++ +
Sbjct: 190 KTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 7e-19
Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 23/240 (9%)
Query: 1192 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1245
I FQ V RY+ P AL+D+N +I G+ V I+G TG+GKS++ LN L + T
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS- 61
Query: 1246 CGGQILVDGLNII-----NTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKI 1298
G + + G +I N ++ LR + +V Q P LFE ++ ++ MN +
Sbjct: 62 --GTVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE 118
Query: 1299 WSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
+K +E +E VGL E + S S GQ + + +A L +VL LDE TA +
Sbjct: 119 EDAKQK--AREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 1358 DAQTASILQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414
D + + + KG+T + + H + D+I+++ G + QG P+ + D
Sbjct: 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 8e-19
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSS-------LLNSILGEMML--------THGSIHA 670
VL ++ L G +VA++G GSGKS+ L G+++L H +H
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555
Query: 671 SGSIAYVPQVPWILSGTIRDNILFGKNYDPQS-YSETLKACTLDVDISLMVGGDMAYIGE 729
+A V Q P + SG++R+NI +G P KA I G +GE
Sbjct: 556 Q--VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR-- 787
KG LSGGQ+ R+A+ARA+ + +LD+ SA+DA+ ++ + +R
Sbjct: 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC------EQLLQESRSRASRTV 667
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+L H + + AD ++V+ KG V +G+ L
Sbjct: 668 LLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-18
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L ++ ++ G+ VG+VG GAGK+++L A+ G +LV G ++ R R
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 1269 FAVVPQSPFL-FEGSLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1323
A VPQ L FE +R ++ P H + W+ ++ V+ +E G+ F
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTP-HRSR-FDTWTETDRAAVERAMERTGVAQFADRP 136
Query: 1324 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVI 1379
S S G+RQ + LARAL +++ VL LDE TA++D +T +++ + G T +
Sbjct: 137 VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD---GKTAV 193
Query: 1380 TIAHRISTVLNM-----DEILILDHGHLVEQGNPQTLL 1412
H L++ DE+++L G + G P +L
Sbjct: 194 AAIHD----LDLAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672
L+ ++L + G V ++G G GK++ L I G T G I+ G
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 673 --SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
IA V Q P + T+ DNI FG + E ++ A L ++
Sbjct: 71 DRDIAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE------ 121
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+ K LSGGQR R+AL RA+ ++++D+ LS +DA++ R + +
Sbjct: 122 ---HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL-RVQMRAELKRLQ 177
Query: 782 M-LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIG 815
L T I TH+ V+A++ AD + VM+ GQ++ IG
Sbjct: 178 QRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 26/230 (11%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +NV+ Y + AL ++ I+ G ++G +G GK+++L + G+IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLE-- 1303
+DG +I N P + V Q+ LF P H+ ++ L++ + +
Sbjct: 59 LDGKDITNLPPH--KRPVNTVFQNYALF---------P-HLTVFENIAFGLRLKKLPKAE 106
Query: 1304 -KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
K V E ++ V LE + S GQ+Q + +ARAL+ KVL LDE +D +
Sbjct: 107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 1363 SILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1409
+Q + K G+T + + H L M D I +++ G + + G P+
Sbjct: 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPE 216
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 16/230 (6%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS---SILNALFRLTPICGG 1248
+E ++ RY AL D++FT+ G V ++G GAGKS S+L L+ G
Sbjct: 2 LEVAGLSFRYGAR--RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE---G 56
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNLDPFHMNDDLK-IWSVLEKCH 1306
QI V G ++ P L R VV Q P L + S+R NL +H L + +
Sbjct: 57 QISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLR-YHA--ALHGLSRAEARAR 112
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ E + +GL + + G R+ + +ARALL +L LDE T +D + + +
Sbjct: 113 IAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 1367 NAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414
+ + + G++V+ H + + D +++L G ++ G L
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 1e-18
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 54/199 (27%)
Query: 1192 IEFQNVTMRYKPSLPAA---LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
IE +N+++ + P L D++F I+ G ++ I G +G GKSS+ AL L P G
Sbjct: 1 IELENLSL----ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS-VLEKCHV 1307
+I +PQ P+L G+LR+ L + W VL
Sbjct: 57 RI-----------GMPEGEDLLFLPQRPYLPLGTLREQL--------IYPWDDVL----- 92
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
S G++Q + AR LL K + LDE T+ +D ++ L
Sbjct: 93 --------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 1368 AISSECKGMTVITIAHRIS 1386
+ G+TVI++ HR S
Sbjct: 133 LLKEL--GITVISVGHRPS 149
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
+N+ YK ++D++ + G VG++G GAGK++ + L G+IL+D
Sbjct: 8 ENLAKSYKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 1255 LNIINTPVRDLRGRFAV--VPQSPFLFEG-SLRDNLDPF--HMNDDLKIWSVLEKCHVKE 1309
+I P+ R R + +PQ +F ++ DN+ DLK K +
Sbjct: 66 EDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKK--AERKEELDA 122
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
+E + S S G+R+ + +ARAL + K + LDE A VD +Q I
Sbjct: 123 LLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII 182
Query: 1370 SS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
+ +G+ V+ H + L++ D I+ G ++ +G+P+ ++ +E
Sbjct: 183 KHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230
|
Length = 243 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 3e-18
Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 19/236 (8%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR-----LTPI 1245
LIE +++ Y S AL++INF +++ ++G GAGKS+ LFR L P
Sbjct: 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKST----LFRHFNGILKP- 56
Query: 1246 CGGQILVDGLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
G +L+ G I +R++R +V Q+P +F ++ ++ +N L +V
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH 116
Query: 1304 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
+ V + +GLE S G+++ + +A + +VL LDE TA +D Q
Sbjct: 117 R--VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 1364 ILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL-LQDE 1415
L + ++ E GMTVI H++ V M D I ++D G +V G + + LQ +
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 4e-18
Identities = 91/330 (27%), Positives = 145/330 (43%), Gaps = 40/330 (12%)
Query: 509 ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRR 568
A+T ++ + G ++ +L V + N LI L+ I F + +
Sbjct: 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFIT---QIFEARAK 305
Query: 569 LTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 628
L F + + E+ A++P L N AV + T + Q V
Sbjct: 306 LEDFFDLEDSVFQREEPADAPE-----LPNVKG---AVEFRHIT---FEFANSSQGV--F 352
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIA 675
VS G VA++G G+GK++L+N + T G I G SIA
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412
Query: 676 YVPQVPWILSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
V Q + + +IR+NI G+ D + Y A D + G D +GE+G
Sbjct: 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD-TLVGERGNR 471
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV-ARWILSNAIMGPHMLQKTR--ILC 790
LSGG+R RLA+ARA+ + I +LD+ SA+D + AR + NAI L+K R +
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEAR--VKNAI---DALRKNRTTFII 526
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL 820
H + + AD+V+ +D+G++ GS +L
Sbjct: 527 AHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 5e-18
Identities = 66/231 (28%), Positives = 101/231 (43%), Gaps = 21/231 (9%)
Query: 1191 LIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1247
+I N T + P AL+ ++ I G V ++G GAGKS++LNA+
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60
Query: 1248 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGS-----LRDNLDPFHMNDDLKIWSVL 1302
GQIL+DG+++ V A V Q P G+ + +NL + S
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDP--LAGTAPELTIEENLALAESRGKKRGLSSA 118
Query: 1303 E----KCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
+ +E + + GLE + + S GQRQ + L A L K+L LDE TA
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 1357 VDAQTASILQNA---ISSECKGMTVITIAHRISTVLNMDEILI-LDHGHLV 1403
+D +TA + I E K +T + + H + L+ LI L G +V
Sbjct: 179 LDPKTAEFVMELTAKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 31/218 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQ 679
V L+ VSL +P G LVA++G GSGK++LL I G G+I A+
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 680 VPWILSG-------TIRDNILFGKNYDPQSY--SETLKACTLDVDISLMVGGDMAYIGEK 730
V ++ T+ DN+ FG P+S E + + L+ + ++ ++
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV---QLDWLADR 132
Query: 731 GVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWI--LSNAIMGPHML 783
LSGGQR R+ALARA+ + +LD+ A+DA+V RW+ L L
Sbjct: 133 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH------DEL 186
Query: 784 QKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
T + TH+ +A+ AD VVVM+KG+++ +G+ ++
Sbjct: 187 HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 6e-18
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL VS + G + ++G G+GKS+L+ ++ + G I G
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 673 SIAYVPQVPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
S+ +PQ P + SGTIR N+ F + D + Y L+ + E G
Sbjct: 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY-GALR------------------VSEGG 123
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+NLS GQR L LARA+ + +LD+ +++D I + T +
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI--QKTIREEFTNSTILTIA 181
Query: 792 HNVQAISAADMVVVMDKGQVKWIGS 816
H ++ I D ++VMD G+VK
Sbjct: 182 HRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 6e-18
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 63/218 (28%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E + +T R+ + A L ++ ++ G ++G GAGKS+++ L L G+IL
Sbjct: 1 LELRGITKRF-GGVKA-LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
VD G P
Sbjct: 59 VD---------------------------GKEVSFASPRDARR----------------- 74
Query: 1312 EAVGLETFVKESGISF----SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+GI+ SVG+RQ++ +ARAL +++++L LDE TA + L
Sbjct: 75 -----------AGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
Query: 1368 AISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1403
I G+ VI I+HR+ V + D + +L G +V
Sbjct: 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 72/244 (29%), Positives = 110/244 (45%), Gaps = 33/244 (13%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC- 1246
IE +N+ + Y AL +IN I ++G +G GKS++L +L R L P
Sbjct: 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1247 -GGQILVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
G++L DG +I + V +LR R +V Q P F S+ DN+ ++ + +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI-----AYGPRLHGIKD 113
Query: 1304 KCHVKEEVEA----VGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
K + E VE L VK+ S + S GQ+Q +C+ARAL +VL LDE T+
Sbjct: 114 KKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 1356 NVDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQ 1409
+D ++ I K T++ + H RIS D G LVE G +
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARIS-----DRTAFFYDGELVEYGPTE 228
Query: 1410 TLLQ 1413
+
Sbjct: 229 QIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 7e-18
Identities = 61/234 (26%), Positives = 119/234 (50%), Gaps = 15/234 (6%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1247
++E +++ Y P AL INF E G V ++G GAGKS++ N + + T
Sbjct: 1 ILETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---S 56
Query: 1248 GQILVDG--LNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
G++L+ G + + ++R +V Q+P LF ++ +++ +N L V +
Sbjct: 57 GEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK 116
Query: 1304 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
+ VKE ++AVG+E F + S GQ++ + +A L +++ LDE T+ +D AS
Sbjct: 117 R--VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 1364 ILQNAISS-ECKGMTVITIAHRISTV-LNMDEILILDHGHLVEQGNPQTLLQDE 1415
+ + +G+T+I H + V + D++ ++ G ++++G P+ + D
Sbjct: 175 QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
Length = 275 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 8e-18
Identities = 62/210 (29%), Positives = 85/210 (40%), Gaps = 65/210 (30%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
Q VLN VSL + G +VA++G GSGKS+LL I G GSI G
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDEL 71
Query: 673 -----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
I V Q + T+ +NI G
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------- 100
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-----NAIMGPH 781
LSGGQ+ R+ALARA+ D+ +LD+ SA+D R + + A
Sbjct: 101 -------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA----- 148
Query: 782 MLQKTRILCTHNV-QAISAADMVVVMDKGQ 810
L T +L TH++ +A AD VVV+ G+
Sbjct: 149 QLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-17
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 25/208 (12%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672
+ N+VL ++L +P VA++G GSGKS+L + ++G LT G I G
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411
Query: 673 ----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+A V Q P +L+ T N+ G++ + + L+ L + G +G
Sbjct: 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR- 787
E+G NLS GQ+ LALAR + I +LD+ + +D+ + I L R
Sbjct: 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-------QQALAAVRE 524
Query: 788 ----ILCTHNVQAISAADMVVVMDKGQV 811
++ H + I AD ++V+ +GQ
Sbjct: 525 HTTLVVIAHRLSTIVEADTILVLHRGQA 552
|
Length = 592 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------- 673
+ L VSL + KG V +IG GSGKS+LL + G + T G + G
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73
Query: 674 -------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGD 723
+ V Q P + T+ D + FG ++ + V +VG
Sbjct: 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFG----LENLGLPREEIEERVAEALELVG-- 127
Query: 724 MAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG--P 780
+ + ++ NLSGGQ+ R+A+A + G +I +LD+ + +D + R +L ++
Sbjct: 128 LEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL--ELLKKLK 185
Query: 781 HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
KT I+ TH+++ + AD VVV+D G++ G A++
Sbjct: 186 EEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226
|
Length = 235 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 44/224 (19%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
++ +SL + KG + ++G G+GK++ L + GE+ T G+ + +G
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAA 73
Query: 673 --SIAYVPQ---VPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGG 722
S+ Y PQ + L T+R+++ F G +V++ L V G
Sbjct: 74 RQSLGYCPQFDALFDEL--TVREHLRFYARLKGLP---------KSEIKEEVELLLRVLG 122
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
++ LSGG + +L+LA A+ G + +LD+ S +D R I +
Sbjct: 123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-------L 175
Query: 783 LQKTR-----ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
+ + R IL TH++ A D + +M G+++ IGS +L
Sbjct: 176 ILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
+N++ ++ + L D+N TIE G I+G +G+GKS++LN + L GQ+ ++G
Sbjct: 2 KNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59
Query: 1255 ---LNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
+ + R + + Q+ L E ++ +NLD + K S EK K+
Sbjct: 60 QETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD---LGLKYKKLSKKEKREKKK 116
Query: 1310 EV-EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
E E VGL +K+ S G++Q + LARA+LK ++ DE T ++D + + +
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 1369 ISSECK-GMTVITIAH 1383
+ G T+I + H
Sbjct: 177 LLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 9/224 (4%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +N+ +Y A+ ++F + G G++G GAGK++ + L L G+
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
V G +++ P R++R R +V Q + + + +NL + + + + E
Sbjct: 59 VAGHDVVREP-REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP-GAERRE-RIDEL 115
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
++ VGL ++S G R+ + +AR+L+ +VL LDE T +D QT + + I
Sbjct: 116 LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175
Query: 1371 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1411
E GMT++ H + + D + I+DHG ++ +G P+ L
Sbjct: 176 KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 29/237 (12%)
Query: 1191 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLT 1243
+I+ +NV+ +Y+ + AL D+N ++ G + I+GR G+GKS+I +NAL L
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LI 61
Query: 1244 PICGGQILVDGLNIINTP-VRDLRGRFAVVPQSPFLFEGSLRDNL--------DPFHMND 1294
P G++ VDGL+ + + D+R + +V Q+P DN D +
Sbjct: 62 P-SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP--------DNQIVATIVEEDVAFGPE 112
Query: 1295 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354
+L I + V E ++ VG+ + + + S GQ+Q + +A L + + DE T
Sbjct: 113 NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172
Query: 1355 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1409
A +D + N I K G+T+I I H + + D I+++D G +V +G P+
Sbjct: 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPK 229
|
Length = 280 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 22/239 (9%)
Query: 1192 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
I QNV+ Y+ P AL D+N TIE G+ +G TG+GKS+I+ L L G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1249 QILVDGLNIINTP----VRDLRGRFAVV---PQSPFLFEGSLRD-NLDP--FHMNDDLKI 1298
+ VD I +T ++ +R + +V P+S E L+D P F ++ +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1299 WSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
EK + VG+ E+ +++ S GQ + + +A L K+L LDE TA +
Sbjct: 123 ALAREKLAL------VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1358 DAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
D + L GMT++ + H + V N D + +L+ G LV G P+ + QD
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
Length = 280 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 3e-17
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 40/231 (17%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN---TPVRD 1264
A+ I+ T+ G +G+VG +G+GKS++ AL RL P G+I DG +I +R
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 1265 LRGRFAVVPQSPFLFEGSLRDNL-------DPFHMNDDLKIWSVLEKCH-VKEEVEAVGL 1316
LR R VV Q P+ GSL + + +++ S E+ V E +E VGL
Sbjct: 361 LRRRMQVVFQDPY---GSLSPRMTVGQIIEEGLRVHE--PKLSAAERDQRVIEALEEVGL 415
Query: 1317 -----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQN 1367
+ E FS GQRQ I +ARAL+ +++ LDE T+ +D AQ +L++
Sbjct: 416 DPATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD 471
Query: 1368 AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQT 1410
+ G++ + I+H ++ V + ++++ G +VEQG NPQ
Sbjct: 472 L--QQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQH 520
|
Length = 534 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-17
Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 45/218 (20%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L +SL + KG V ++G G GK++LL I G T G+I+ G
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78
Query: 673 -----SIAYVPQVPWILSGTIRDNI---LFGKNYDPQSYSETLKACTLD-VDISLMVGGD 723
S A P + T+ DNI L + +E + A LD V + G +
Sbjct: 79 GIVFQSYALFPNL------TVADNIAYGLKNRGMGRAEVAERV-AELLDLVGLP---GSE 128
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
Y G+ LSGGQ+ R+ALARA+ + +LD+ LSA+DA+V R L I L
Sbjct: 129 RKYPGQ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARV-REHLRTEIRQ---L 180
Query: 784 QK----TRILCTHNV-QAISAADMVVVMDKGQVKWIGS 816
Q+ T I+ TH+ +A+S AD +VVM+ G ++ +G+
Sbjct: 181 QRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 3e-17
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 28/234 (11%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
L+E + ++ + AL ++ T+ G ++G GAGKS+++ L + P G+I
Sbjct: 8 LLELRGISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1251 LVDGLNI-INTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-------------PFHMNDDL 1296
L+DG + ++P L A V Q E SL NL F + D
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQ-----ELSLVPNLSVAENIFLGREPTRRFGLID-- 118
Query: 1297 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
+ + +E + +GL+ S+ QRQ++ +ARAL ++VL LDE TA
Sbjct: 119 --RKAMRR-RARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175
Query: 1357 VDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1408
+ + L + I + +G+ +I I+HR+ V + D I +L G +V
Sbjct: 176 LTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (207), Expect = 5e-17
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 13/243 (5%)
Query: 1182 LSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1241
L D+ + E +N Y LHD+N I+ +G +G GKS+ L L +
Sbjct: 71 LKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ 130
Query: 1242 LTPICGG-----QILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMND 1294
L + G +I G N + + +LR R +V Q P FE S+ DN+ N+
Sbjct: 131 LNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNN 190
Query: 1295 DLKIWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCL 1350
+ +LEK V++ +++ L VK+ +G + S GQ+Q +C+ARA+ +VL +
Sbjct: 191 GINDRKILEKI-VEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249
Query: 1351 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1409
DE T+ +D + ++ I K ++I + H ++ + DE + G + E G +
Sbjct: 250 DEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309
Query: 1410 TLL 1412
T+
Sbjct: 310 TIF 312
|
Length = 329 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 26/217 (11%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L +++ +E G I+G TG+GKS +L + G+IL++G +I N P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMND------DLKIWSVLEKCHVKEEV----EAVGLET 1318
+ VPQ+ LF HM LK V +K ++ +V E +G++
Sbjct: 73 ISYVPQNYALFP----------HMTVYKNIAYGLKKRKV-DKKEIERKVLEIAEMLGIDH 121
Query: 1319 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GM 1376
+ + S G++Q + +ARAL+ + K+L LDE + +D +T L+ + K G+
Sbjct: 122 LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181
Query: 1377 TVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
TV+ + H + D++ I+ +G L++ G P+ +
Sbjct: 182 TVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 6e-17
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 24/226 (10%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E +NVT R+ AL D+N I G V ++G +G GK++ L + L G+I
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLE---KCHV 1307
+ G ++ + P +D R A+V Q+ L+ ++ DN + LK+ V + V
Sbjct: 59 IGGRDVTDLPPKD-RD-IAMVFQNYALYPHMTVYDN-----IAFGLKLRKVPKDEIDERV 111
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+E E + +E + S GQRQ + L RA+++ KV +DE +N+DA+ L+
Sbjct: 112 REVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK----LRV 167
Query: 1368 AISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+ +E K G T I + H + M D I +++ G + + G
Sbjct: 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 6e-17
Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 33/218 (15%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 668
+ LN +SL + +G V VIG G+GKS+LLN+I G++ T G I
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 669 -HASGSIAYVPQVPWILSG-----TIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVG 721
+ +A V Q P L+G TI +N+ ++ + S L +
Sbjct: 76 AKRANLLARVFQDP--LAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 722 GDMAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LS 774
+ E ++ LSGGQR L+L A H I +LD+ +A+D + A ++ L+
Sbjct: 134 LGLGL--ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELT 191
Query: 775 NAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 811
I+ H L T ++ THN+ A+ + ++++ G++
Sbjct: 192 AKIVEEHKL--TTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (203), Expect = 7e-17
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 18/238 (7%)
Query: 1191 LIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1247
+I+F+ V Y+P+ P AL DI+ ++ G+ ++G TG+GKS++L L L
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 1248 GQILVDGLNIINT-------PVRDLRGRFAVVPQSPFLFEGSLRD-NLDPFHMNDDLKIW 1299
G++ V + + +T PVR G P+S E L+D P + I
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP----QNFGIP 116
Query: 1300 SVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
+ E++E VGL + F ++S S GQ + + +A L +VL LDE TA +D
Sbjct: 117 KEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 1359 AQTASILQNAISS-ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414
+ + S G TV+ + H + V + D + +L+ GH++ G P + Q+
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 9e-17
Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 17/248 (6%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+ + +N+T R+ + + ++N TI+ GT V ++G +G GK+++L + L G
Sbjct: 4 KNFVVLKNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61
Query: 1249 QILVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEK 1304
QI +DG ++ + + RD+ +V QS LF SL +N+ M L + K
Sbjct: 62 QIFIDGEDVTHRSIQQRDI----CMVFQSYALFPHMSLGENVGYGLKM---LGVPKEERK 114
Query: 1305 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364
VKE +E V L F S GQ+Q + LARAL+ KVL DE +N+DA
Sbjct: 115 QRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174
Query: 1365 LQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-S 1420
++ I + +T + + H S + D +++++ G +++ G+PQ L + S F +
Sbjct: 175 MREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMA 234
Query: 1421 SFVRASTM 1428
SF+ + +
Sbjct: 235 SFMGDANI 242
|
Length = 351 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 22/224 (9%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT---PIC--GGQILVDGLNI--INT 1260
L DIN I +G +G GKS+ L R+ P C G++ +DG+++ ++T
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFH--MNDDLKIWSVLEKCHVKEEVEAVG 1315
V LR + +V Q P F S+ DN+ H + K+ ++EK + +VG
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEK-----SLTSVG 134
Query: 1316 L----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1371
L +K+S S GQ+Q +C+ARA+ +L +DE + +D ++++N I
Sbjct: 135 LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
Query: 1372 ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
K T+I + H + + D + G +VE Q + ++
Sbjct: 195 LKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-16
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+E + +T R+ P + A D++ +++ G ++G GAGKS+++ LF L G+I
Sbjct: 4 ALEMRGITKRF-PGV-VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1251 LVDGLNI-INTPVRDLRGRFAVVPQSPFLFEG-SLRDNL-----DPFHMNDDLKIWSVLE 1303
VDG + I +P +R +V Q L ++ +N+ D +
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQ--ARA 119
Query: 1304 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA- 1362
+ +KE E GL SVG++Q + + +AL + +++L LDE TA + Q A
Sbjct: 120 R--IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177
Query: 1363 ---SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1408
IL+ + G T+I I H++ V+ + D + +L G +V +P
Sbjct: 178 ELFEILRRLAAE---GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP 224
|
Length = 501 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 23/243 (9%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
L+E + ++ R+ A++D++ + G VG++G GAGK+++ N + G +
Sbjct: 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61
Query: 1251 LVDGLNIINTPVRDLRGRFAVVP--QSPFLFEG-SLRDN-LDPFHMNDDLKIWSVL-EKC 1305
+ G +I P R + Q LF G ++ +N H L + +L
Sbjct: 62 IFRGRDITGLPPH-RIARLGIARTFQITRLFPGLTVLENVAVGAHAR--LGLSGLLGRPR 118
Query: 1306 HVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
KEE EA VGL + S GQ++ + +ARAL K+L LDE A
Sbjct: 119 ARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178
Query: 1356 NVDAQTASILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
++ + L I + G+T++ I H + V+ + D I++L++G ++ +G P+ +
Sbjct: 179 GLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238
Query: 1413 QDE 1415
+
Sbjct: 239 NNP 241
|
Length = 250 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
LN VSL + +G + ++GE GSGKS+L + G + GSI G
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 674 --IAYVPQVP-------WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ V Q P T+ + + P S++ + ++ VG
Sbjct: 82 RPVQMVFQDPYSSLNPRR----TVGRIL--SEPLRPHGLSKSQQR---IAELLDQVGLPP 132
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
+++ + LSGGQR R+A+ARA+ + +LD+ SA+D V IL+ + L+
Sbjct: 133 SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLL----ELK 188
Query: 785 KTR----ILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLA 821
K R + +H++ + D + VMD GQ+ IG + +L
Sbjct: 189 KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
|
Length = 252 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 38/221 (17%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
++ +SL + KG V ++G G GK++LL I G + G I G
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77
Query: 673 SIAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDM 724
I V Q S T+ +N+ FG + +KA + L +VG
Sbjct: 78 PIGMVFQ-----SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA---LELVGLEGF 129
Query: 725 A--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
A + LSGGQ+ R+ALARA+ + +LD+ LSA+DA++ R + +
Sbjct: 130 ADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL-REQMRKELKELQR 184
Query: 783 -LQKTRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 820
L T + TH+ Q A++ +D + VM+ G+++ +G+ ++
Sbjct: 185 ELGITFVYVTHD-QEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
L+E + V Y L++I+ ++ G + I G +G GKS++L + L G +
Sbjct: 3 LLELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKE 1309
L +G ++ R + + Q+P LF ++ DNL P+ + + ++ +
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR-----PDRAAALD 115
Query: 1310 EVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
+ L ++ + ++ S G++Q I L R L K+L LDE T+ +D ++
Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175
Query: 1369 I 1369
I
Sbjct: 176 I 176
|
Length = 223 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 2e-16
Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 18/220 (8%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRD 1264
AL DIN IE ++G +G GKS+ L R+ G + ++G ++ N V
Sbjct: 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76
Query: 1265 LRGRFAVVPQSPFLFEGSLRDNLD---PFHM------NDDLKIWSVLEKCHVKEEVEAVG 1315
LR +V Q P +F S+ +N+ H ++ + L+K + EEV+
Sbjct: 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK- 135
Query: 1316 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1375
+K++ ++ S GQ+Q +C+ARAL K+L LDE T+ +D ++ +++ +
Sbjct: 136 ----LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 1376 MTVITIAHRISTVLNMDEILILDH-GHLVEQGNPQTLLQD 1414
+++I + H + + + H G L+E G + ++
Sbjct: 192 LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 20/229 (8%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQ 1249
+ +V Y LP + T+ G V I+G +GAGKS++LN A F TP G+
Sbjct: 2 LALDDVRFSYG-HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGF-ETPA-SGE 55
Query: 1250 ILVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHV 1307
IL++G++ +P + R +++ Q LF ++ N+ ++ LK+ + ++ V
Sbjct: 56 ILINGVDHTASPPAE---RPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKV 110
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ 1366
+ VGL F+K S GQRQ + LAR L++ +L LDE + +D A A +L
Sbjct: 111 EAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLA 170
Query: 1367 --NAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412
+ + E + MT++ + H D ++ LD+G + QG+ Q LL
Sbjct: 171 LVSQLCDE-RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-16
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 33/245 (13%)
Query: 1192 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1245
I F NV+ Y+ P A+HD+N E G IVG+TG+GKS++ +NAL + T
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT- 61
Query: 1246 CGGQILVDGLNIINTP----VRDLRGRFAVVPQSP--FLFEGSLRDNLD--PFHMNDDLK 1297
G + VD + I + +R +R R +V Q P LFE ++ + P + +L
Sbjct: 62 --GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD 119
Query: 1298 IWSVLEKCHVKEEVEAVGLE-----TFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1352
VK + ++ + +S S GQ + I + L + ++ LDE
Sbjct: 120 --------EVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 1353 CTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1409
TA +D Q+ + + S + T+I ++H ++ V DE++++ G +V Q +P+
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231
Query: 1410 TLLQD 1414
L +D
Sbjct: 232 ELFKD 236
|
Length = 286 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 2e-16
Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 21/223 (9%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINTPV 1262
AL I+ IE + V +G +G GKS+ L R+ + G+I +DG NI + V
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 1263 R--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV------ 1314
+ +LR +V Q P F S+ +N+ L++ V + +++ VE
Sbjct: 78 QVDELRKNVGMVFQRPNPFPKSIFENV-----AYGLRVNGVKDNAFIRQRVEETLKGAAL 132
Query: 1315 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1372
++ +KES + S GQ+Q +C+ARA+ S VL +DE + +D + + ++ I
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 1373 CKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
K T++ + H + + D+ G +VE + + + +
Sbjct: 193 KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235
|
Length = 250 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 46/249 (18%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+I +NV+ Y + L D++ I G I+G GAGKS++L+ + RL G+I
Sbjct: 1 MITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL-------- 1302
+DGL + +TP ++L + +++ Q +N H+N L + ++
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQ----------EN----HINSRLTVRDLVGFGRFPYS 104
Query: 1303 -------EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
++ + E +E + LE S GQRQ +A L + + + LDE
Sbjct: 105 QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 1356 NVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVEQG 1406
N+D Q IL+ + G T++ + H I N D I+ L +G +V+QG
Sbjct: 165 NLDMKHSVQIMKILRRLA--DELGKTIVVVLHDI----NFASCYSDHIVALKNGKVVKQG 218
Query: 1407 NPQTLLQDE 1415
+P ++Q E
Sbjct: 219 SPDEIIQPE 227
|
Length = 252 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 44/225 (19%)
Query: 1192 IEFQNVTMRYKPSLPAA----LHDINFTIEGGTQVGIVGRTGAGKSSILNAL--FRLTPI 1245
+ F+N+T+ K S + L +++ + G I+G +GAGKS++LNAL R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 1246 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1305
G++L++G R R VPQ DD+ +
Sbjct: 64 VSGEVLING---RPLDKRSFRKIIGYVPQ-------------------DDI----LHPTL 97
Query: 1306 HVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364
V+E + A L G+ S G+R+ + +A L+ + +L LDE T+ +D+ +A
Sbjct: 98 TVRETLMFAAKL------RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
Query: 1365 LQNAISSECK-GMTVITIAHRIST-VLNM-DEILILDHGHLVEQG 1406
+ + + G T+I H+ S+ + + D++L+L G ++ G
Sbjct: 150 VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-16
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 10/232 (4%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+++ + + Y AL IN I+ G I+G GAGKS++ L + G+I
Sbjct: 5 ILKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1251 LVDG--LNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1306
L DG ++ + LR +V Q P LF S+ ++ +N L V ++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-- 121
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
V ++ G+E + S GQ++ + +A L+ KVL LDE TA +D S +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 1367 NAISSECKGM--TVITIAHRISTV-LNMDEILILDHGHLVEQGNPQTLLQDE 1415
+ K + T+I H I V L D + ++ G ++ QGNP+ + ++
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233
|
Length = 283 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-16
Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 53/237 (22%)
Query: 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664
+++ D T +W + L S +P GS+ A++G GSGKS+L +++G + L
Sbjct: 6 GIVVNDVTVTW-----RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA 60
Query: 665 HGSIHASGS----------IAYVPQ---VPWILSGTIRDNILFG-----------KNYDP 700
G I G +AYVPQ V W + D ++ G K D
Sbjct: 61 SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDR 120
Query: 701 QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV 760
Q + L VD MV IGE LSGGQ+ R+ LARA+ + +LD+
Sbjct: 121 QIVTAALAR----VD---MVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEP 169
Query: 761 LSAVDAQVARWILSNAIMGPHMLQ------KTRILCTHNVQAISAADMVVVMDKGQV 811
+ VD + I+S +L+ KT ++ THN+ +++ VM KG V
Sbjct: 170 FTGVDVKTEARIIS-------LLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTV 219
|
Length = 272 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 3e-16
Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E +N++ R+ A+++I+ T+ + G++G GAGKS++L + + G+I+
Sbjct: 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMN---DDLKIWSVLEKCHV 1307
DG +DL +++ +SP L+E + R+NL D +I VL
Sbjct: 59 FDGHPWTR---KDLHKIGSLI-ESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNI--- 111
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
V L K+ FS+G +Q + +A ALL K+L LDE T +D L+
Sbjct: 112 ------VDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE 165
Query: 1368 AISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
I S +G+TVI +H +S V + D I I+ G L QG
Sbjct: 166 LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 4e-16
Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 41/216 (18%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------HASGS---- 673
L+ VS + KG + ++GE GSGKS+L +ILG + T GSI S
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79
Query: 674 ----IAYVPQVPWILSG-----TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q P +S TI + I + + S E K L + + VG
Sbjct: 80 RRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV--GVGLP 135
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ LSGGQR R+A+ARA+ + + D+ SA+D V IL +L
Sbjct: 136 EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL-------DLL 188
Query: 784 QK-------TRILCTHNVQAISA-ADMVVVMDKGQV 811
+K T + TH++ ++ AD V VM G++
Sbjct: 189 KKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+L +S+ G++ ++G G+GKS+L+ I + T GSI G
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 673 -SIAYVPQVPWILSGTIRDNILFG------KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I V Q P + GT++DNI +G KN D + Y +VG +
Sbjct: 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS-------------IVGLNKE 123
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
Y NLSGG+ R+++AR + + ++ +LD+ SA+D I + + +
Sbjct: 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL 183
Query: 786 TRILCTHNV-QAISAADMVVVMDKGQV 811
T I THN+ QA D ++KG +
Sbjct: 184 TVIWITHNMEQAKRIGDYTAFLNKGIL 210
|
Length = 241 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI------LVDGLNIINTPVRD 1264
I+F + GI G +GAGKS++L + L GG I L D IN P +
Sbjct: 16 KIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 1265 LRGRFAVVPQSPFLFEG-SLRDNLD---PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1320
R + +V Q LF ++R+NL N + +I V E ++ +GL+ +
Sbjct: 75 -R-KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRI-------SVDELLDLLGLDHLL 125
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTV 1378
S G++Q + LARAL ++L LDE + +D L + K + V
Sbjct: 126 NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPV 185
Query: 1379 ITIAHRISTVLNM-DEILILDHGHLVEQG 1406
I + H +S + D I++++ G L G
Sbjct: 186 IFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 5e-16
Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG------------EMMLTHGSIHA-SG 672
L+ +SL + KG V ++G GSGKS+LL + G LT S+
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75
Query: 673 SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ V Q P T+ + + FG E + V+ +L + G
Sbjct: 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEER----VEEALELVGLEGLRDRS 131
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQ+ R+A+A + DI +LD+ + +D R +L + KT I+
Sbjct: 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL-ELLKKLKAEGKTIIIV 190
Query: 791 THNVQAISA-ADMVVVMDKGQ 810
TH++ + AD V+V++ G+
Sbjct: 191 THDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 5e-16
Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 66/271 (24%)
Query: 1192 IEFQNVTMRYKPSLPAALH-DINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICGGQ 1249
I+F+NV Y ++ D+NFT+ G VG +G GKS+IL + RL P G
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-----------SLRD--------NLDPF 1290
I+ D N+ + ++ R + VV Q P LF SL+D N D
Sbjct: 443 IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGN 502
Query: 1291 HMNDDL-KIWSVLEKC-----------------HVKEEVEAV------------------ 1314
++ K S KC +++ + +
Sbjct: 503 DSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFV 562
Query: 1315 -----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
ET V + S GQ+Q I +ARA++++ K+L LDE T+++D ++ ++Q I
Sbjct: 563 SALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI 622
Query: 1370 SSECKG---MTVITIAHRISTVLNMDEILIL 1397
++ KG I IAHR+ST+ + I +L
Sbjct: 623 NN-LKGNENRITIIIAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +NV+ R+ A L D++ I G V ++G +G+GK+++L + L G IL
Sbjct: 3 IEVRNVSKRF-GDFVA-LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLE------- 1303
G + + PV++ F V Q LF ++ DN+ F L++ E
Sbjct: 61 FGGEDATDVPVQERNVGF--VFQHYALFRHMTVFDNV-AF----GLRVKPRSERPPEAEI 113
Query: 1304 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
+ V E ++ V L+ S GQRQ + LARAL KVL LDE +DA+
Sbjct: 114 RAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173
Query: 1364 ILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1409
L+ + + +T + + H L + D +++++ G + + G P
Sbjct: 174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 33/241 (13%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1246
+E + ++ Y ALHDI+ E ++G +G GKS+ L L R L P
Sbjct: 7 MEARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV 64
Query: 1247 GGQILVDGLNIINT--PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1304
G+IL+DG NI + V +LR R +V Q P F S+ +N+ L++ V +K
Sbjct: 65 EGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENV-----AYGLRVNGVKDK 119
Query: 1305 CHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
++ E VE L VK ES + S GQ+Q +C+ARAL +VL +DE +
Sbjct: 120 AYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 1357 VDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQT 1410
+D ++ I T+I + H R+S D G L+E G +
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTHNMQQAARVS-----DVTAFFYMGKLIEVGPTEQ 234
Query: 1411 L 1411
+
Sbjct: 235 I 235
|
Length = 253 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 5e-16
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 39/218 (17%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVR-DL 1265
L + ++ G V IVG +G+GKS++L L L G++ + G L+ ++ R L
Sbjct: 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85
Query: 1266 RGR--------FAVVP--------QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
R R F ++P P G + + K
Sbjct: 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD----------------SRAGAKA 129
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA---SILQ 1366
+EAVGL + S G++Q + LARA VL DE T N+D T + L
Sbjct: 130 LLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVE 1404
A++ E +G T++ + H D L L G LVE
Sbjct: 190 FALNRE-RGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 23/211 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------SIAYVPQV 680
+ VS +G + ++GE G+GK++LL I ++ G + G ++
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 681 PWILSG--------TIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+L G T R+N+ F + + +KA ++ L + Y+ +
Sbjct: 78 G-VLFGERGLYARLTARENLKYFARLNGLSR--KEIKARIAELSKRLQLL---EYLDRRV 131
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
S G + ++A+ARA+ H I +LD+ S +D R + I + I +
Sbjct: 132 GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI-RTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 792 HNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
H +Q + A D V+V+ KG+V GS L
Sbjct: 191 HIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 23/222 (10%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNI--INT 1260
AL IN IE ++G +G GKS+ L L R L P G++L+DG +I +
Sbjct: 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77
Query: 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1320
V LR R +V Q P F S+ DN+ +K L++ V++ ++ L V
Sbjct: 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI-VEKSLKGAALWDEV 136
Query: 1321 KE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1376
K+ S + S GQ+Q +C+ARAL +VL +DE T+ +D + ++ I K
Sbjct: 137 KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196
Query: 1377 TVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLL 1412
T++ + H RIS D+ +G +VE G+ L
Sbjct: 197 TIVIVTHNMQQASRIS-----DKTAFFLNGEIVEFGDTVDLF 233
|
Length = 250 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 7e-16
Identities = 64/257 (24%), Positives = 101/257 (39%), Gaps = 58/257 (22%)
Query: 1191 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG- 1247
++E +N+++R + L D++ T+ G V I+G GAGKS++L AL G
Sbjct: 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL------SGE 51
Query: 1248 -----GQILVDGLNIINTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLK 1297
G++ ++G + + +L R AV+PQ PF E + P
Sbjct: 52 LSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP-------- 103
Query: 1298 IWSVLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALL------KSSKV 1347
+ V A V L S G++Q + LAR L +
Sbjct: 104 -HGLSRA-EDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161
Query: 1348 LCLDECTANVDAQ----TASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILD 1398
L LDE T+ +D + + G+ VI + H LN+ D I++L
Sbjct: 162 LLLDEPTSALDLAHQHHVLRLARQLAHER--GLAVIVVLHD----LNLAARYADRIVLLH 215
Query: 1399 HGHLVEQGNPQTLLQDE 1415
G LV G P +L E
Sbjct: 216 QGRLVADGTPAEVLTPE 232
|
Length = 258 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 7e-16
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 15/228 (6%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----- 1245
++E +++++ Y A++DI+ IE ++G +G GKS+ L ++ R+ +
Sbjct: 21 ILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 1246 CGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
G+IL +GLNI+ N V +LR +V Q P F S+ +N+ + SVL+
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 1304 KCHVKEEVEAVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+ V+E + L VK S +S S GQ+Q +C+AR L VL LDE + +D
Sbjct: 139 EI-VEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP 197
Query: 1360 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+ + ++ I+ + ++I + H + L + D +G LVE
Sbjct: 198 ISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 8e-16
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM-MLTHGSIHASGS--- 673
E+ L V+L + G VA++G GSGKS+LLN +LG + T G + +G
Sbjct: 12 GLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLT 70
Query: 674 --------------IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD 715
I +V Q +P T+ +N+ P +
Sbjct: 71 KLSEKELAKLRRKKIGFVFQNFNLLP---DLTVLENVEL-----PLLIAGKSAGRRKRAA 122
Query: 716 ISL--MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 773
L ++G + + +K LSGGQ+ R+A+ARA+ + I + D+ +D++ A+ +L
Sbjct: 123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVL 182
Query: 774 SNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
KT I+ TH+ + AD V+ + G++
Sbjct: 183 ELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 8e-16
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 64/270 (23%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL------------ 1239
IE +N+T ++ L +I+FTIE G +GI+GR+GAGKS +++ L
Sbjct: 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 1240 --FRLT------------------PICGGQ---ILVDGLNIINTPVRDLRGRFAVVPQSP 1276
+ + P+CGG VD N+ + R +R R A++ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 1277 FLFEGSLRDNLDPFHMNDDLKIWSVLEKCH------------VKEEVEAVGLETFVKESG 1324
F G DD + +VLE + +E V L +
Sbjct: 119 FALYG------------DDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166
Query: 1325 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIA 1382
S G++Q + LAR L K + DE T +D QTA ++ NA+ K G++++ +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 1383 HRISTVLNM-DEILILDHGHLVEQGNPQTL 1411
H + ++ D+ + L++G + E+G P +
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 9e-16
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 1224 IVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSL 1283
++G +G GK+++L L G I++DG ++ N P LR +V QS LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-HLRH-INMVFQSYALFP--- 55
Query: 1284 RDNLDPFHMNDD------LKIWSVLE---KCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334
HM + LK+ V K V E + V LE F S GQ+Q
Sbjct: 56 -------HMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQR 108
Query: 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM- 1391
+ LARAL+ K+L LDE + +D + +Q + + E G+T + + H + M
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 1392 DEILILDHGHLVEQGNPQTLLQDECSVFSS 1421
D I I+ G + + G P+ + ++ ++F +
Sbjct: 169 DRIAIMRKGKIAQIGTPEEIYEEPANLFVA 198
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-15
Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 35/233 (15%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIINTPV 1262
A+ I+F IE G + +VG +G+GKS ++ L P G IL DG +++
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 1263 RDLRG----RFAVVPQSPFLFEGSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEA 1313
R LRG + ++ Q P +L+P H + + L++ L + +
Sbjct: 85 RQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQLAEVLRLHRGLSRAAARARALE 137
Query: 1314 ----VGL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1362
VG+ E + S GQRQ + +A AL +L DE T +D AQ
Sbjct: 138 LLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL 197
Query: 1363 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+L+ + +E GM ++ I H + V D + ++ HG +VE G +TL
Sbjct: 198 DLLKE-LQAE-LGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
L +S + KG V +IG G+GKS+LL I G T G + +G +A L
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP----LIELG 97
Query: 686 G------TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739
T R+NI + E + ++ + + GD +I + S G
Sbjct: 98 AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAEL--GD--FIDQPVKTYSSGMY 153
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAI- 797
ARLA + A + DI +LD+VL+ DA + + + KT +L +H++ AI
Sbjct: 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQE--KCLERLNELVEKNKTIVLVSHDLGAIK 211
Query: 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSGF 828
D + ++ GQ++ GS + + Y
Sbjct: 212 QYCDRAIWLEHGQIRMEGSPEE-VIPAYEED 241
|
Length = 249 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 38/227 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
V+L+ V L +P+G ++A++G GSGKS+LL ILG + G I G
Sbjct: 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80
Query: 673 -----SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLM----VG 721
+ + Q + S T+ +N+ F + + E+L ++ LM VG
Sbjct: 81 YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIR-----ELVLMKLELVG 133
Query: 722 --GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
G A Y E LSGG R R+ALARA+ ++ LD+ S +D A I
Sbjct: 134 LRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIR 189
Query: 778 MGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLAVS 823
L T I+ TH++ ++ + AD V V+ G+V G+ +L S
Sbjct: 190 ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 35/206 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+LN +SL + G +A+ G G GKS+LL + + T G++ G
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 674 -IAYVPQVPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
++Y Q P + T+ DN++F + D + + L L I
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP-----------DSI 126
Query: 728 GEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
K + LSGG++ R+AL R + I +LD++ SA+D R I ++ ++ ++
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI--EEMIHRYVREQN 184
Query: 787 R--ILCTHN-VQAISAADMVVVMDKG 809
+ TH+ QAI AD V+ + G
Sbjct: 185 VAVLWITHDKDQAIRHADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 41/243 (16%)
Query: 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252
E N+ + Y S L ++ + G ++GR G GK+++L L L P+ G I +
Sbjct: 2 EVSNLNVYYGQSH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 1253 DGLNIINTP----VRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1304
DG +I P R G A VPQ P L ++ +NL + L
Sbjct: 60 DGEDITKLPPHERAR--AG-IAYVPQGREIFPRL---TVEENLL-----------TGLAA 102
Query: 1305 C-----HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT--- 1354
+ +E+ + L+ + G S GQ+Q + +ARAL+ K+L LDE T
Sbjct: 103 LPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162
Query: 1355 -ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
++ ++ + +E GM ++ + + + D +++ G +V G L
Sbjct: 163 QPSIIKDIGRVI-RRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
Query: 1413 QDE 1415
+D+
Sbjct: 221 EDK 223
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-15
Identities = 92/464 (19%), Positives = 172/464 (37%), Gaps = 49/464 (10%)
Query: 973 KVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1032
K+ + + KI++ P+ ++ R+L +SD+ I + + ++ A + LG A
Sbjct: 82 KLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIIL-TLGSAA 140
Query: 1033 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS----RELRRLDSVSRSPIYASFTETLNGS 1088
L+Y+ LL V + + F + R + + + L G
Sbjct: 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETED----KLQNDYQTILEGR 196
Query: 1089 S--TIRAFKSEDYFMAKFKE------------------HVVLYQRTSYSELTASLWLSLR 1128
T+ ++E + V + WL+L
Sbjct: 197 KELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS 256
Query: 1129 L---QVGLALSYAAPIVSL---LGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSL 1182
L +A + ++ L L + + V+ ++ + P +
Sbjct: 257 LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQA 316
Query: 1183 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1242
PDW +E +NV Y+ + + IN TI+ G V ++G G+GKS++ L L
Sbjct: 317 FPDWK---TLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL 372
Query: 1243 TPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL 1302
G+IL+DG + + D R F+ V LF+ L + ++ W L
Sbjct: 373 YQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL--GPEGKASPQLIEKW--L 428
Query: 1303 EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
++ + + S + S GQ++ + L ALL+ +L LDE A+ D
Sbjct: 429 QRLELAHKTSLNDGRF----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFR 484
Query: 1363 SILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVE 1404
+ K G T+ I+H ++ D +L + +G L E
Sbjct: 485 REFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 3e-15
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 42/222 (18%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+L VSL +P+G +VA++G G+GK++LL +I+G + GSI G
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 674 --IAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAY--- 726
I YVP+ I T+ +N+L G L + Y
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL---------------ERVYELF 119
Query: 727 ------IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ LSGG++ LA+ARA+ + +LD+ S A + AI
Sbjct: 120 PRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE-PSEGLAPKIVEEIFEAIREL 178
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLA 821
T +L N A+ AD V+++G+V G++A+L
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 3e-15
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 42/222 (18%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 672
E+ L VSL + KG VA++G GSGKS+LLN + G T G + G
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISK 70
Query: 673 ------------SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
I +V Q +L T +N+ P + K + L+
Sbjct: 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL-----PLLLAGVPKKERRERAEELL 125
Query: 720 --VG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
VG GD Y E LSGGQ+ R+A+ARA+ + I + D+ +D++ + ++
Sbjct: 126 ERVGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181
Query: 775 -----NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
N G T ++ TH+ + AD ++ + G++
Sbjct: 182 LLRELNKEAG-----TTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-15
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 36/220 (16%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ +SL + G LVA++G G+GKS+LL I G G I +G
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 674 ---IAYVPQVPWILSG-TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA- 725
+ +V Q + T+ DNI FG + P + L + L+ +A
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEEL---LRLVQLEGLAD 132
Query: 726 -YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA----RWILSNAIMGP 780
Y + LSGGQR R+ALARA+ + +LD+ A+DA+V RW+
Sbjct: 133 RYPAQ----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH---- 184
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 819
L T + TH+ +A+ AD VVV+++G+++ +G +
Sbjct: 185 DRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-15
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 20/206 (9%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
+ T G IVG +G+GKS++LN A F TP G++L++G+++ P D
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF-ETP-QSGRVLINGVDVTAAPPADR--- 70
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1323
P S E +L +L ++ LK+ + + ++ + VGL K
Sbjct: 71 ----PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ-AIEVALARVGLAGLEKRL 125
Query: 1324 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITI 1381
S G+RQ + LAR L++ VL LDE A +D + + + + MTV+ +
Sbjct: 126 PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV 185
Query: 1382 AHRISTVLNMDEILI-LDHGHLVEQG 1406
H+ + + ++ LD+G + QG
Sbjct: 186 THQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 4e-15
Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 30/237 (12%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1265
AL++++ + G G++G +GAGKS+++ + L G ++VDG ++ +L
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 1266 -RGRFAVVPQS-PFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCH--VKEEVEAVGLETFV 1320
R + ++ Q L ++ N+ P +++ K ++ V E + VGL
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK-----DEIKRKVTELLALVGLGDKH 134
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMT 1377
+ S GQ+Q + +ARAL + KVL DE T+ +D A T SIL+ I+ G+T
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLT 193
Query: 1378 VITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQTLLQDECSVFSSFVRAS 1426
++ I H + V + D + ++ +G L+EQG +P+T L + F+R++
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQK------FIRST 244
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 4e-15
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 14/231 (6%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+ +N++ RY ++ ++ +++ G VG++G GAGK++ + L G+IL
Sbjct: 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 1252 VDGLNIINTPVRDLRGRFAV--VPQSPFLFEG-SLRDNLDPF--HMNDDLKIWSVLEKCH 1306
+DG +I P+ R R + +PQ +F ++ +N+ K EK
Sbjct: 59 LDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE--EK-- 113
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
++E +E + K S S G+R+ + +ARAL + K L LDE A VD +Q
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 1367 NAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
I + +G+ V+ H + L++ D I+ G ++ +G P+ + +E
Sbjct: 174 KIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-15
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 26/240 (10%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I+ V+ Y A ++ ++FT+ G G++G GAGKS+I + +T G+I
Sbjct: 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSVLEKCHVKEE 1310
V G+ + R R R VVPQ DNLD F + ++L ++ + E
Sbjct: 100 VLGVP-VPARARLARARIGVVPQF---------DNLDLEFTVRENLLVFGRYFGMSTR-E 148
Query: 1311 VEAV--------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
+EAV LE+ S G ++ + LARAL+ ++L LDE T +D
Sbjct: 149 IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
Query: 1363 SILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE--CSV 1418
++ + S +G T++ H + + D + +L+ G + +G P L+ + C V
Sbjct: 209 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQV 268
|
Length = 340 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 4e-15
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 12/236 (5%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
L+E +N+T + A+ D++ TI G ++G +G GKS++L L GQI
Sbjct: 19 LLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 1251 LVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1308
++DG+++ + P R + F QS LF + F + D K+ V
Sbjct: 77 MLDGVDLSHVPPYQRPINMMF----QSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVN 131
Query: 1309 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
E + V ++ F K S GQRQ + LAR+L K K+L LDE +D + +Q
Sbjct: 132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191
Query: 1369 ISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVFSS 1421
+ E G+T + + H + M I I++ G V+ G P+ + + + +S+
Sbjct: 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSA 247
|
Length = 377 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 7/226 (3%)
Query: 1191 LIEFQNVTMRYKPSLPA-ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
+IE +N+T +YK L+D++F ++ G + I+G G+GKS+ + + L GQ
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHV 1307
I++DG + V D+R + +V Q+P F G+ ++ F + N + + E+ V
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER--V 121
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
E +E VG++ F + S GQ+Q + +A A+ K++ LDE T+ +D + L
Sbjct: 122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181
Query: 1368 AISS--ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1411
I + MTVI+I H + V D +L++ +G + P+ L
Sbjct: 182 TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 5e-15
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 41/222 (18%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI----------- 674
VLN +SL +P G +VA++G GSGK++LL I G L H SG I
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG---LEH---QTSGHIRFHGTDVSRLH 70
Query: 675 AYVPQVPWILSG-------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVGGDMAY 726
A +V ++ T+ DNI FG P+ A V L MV +A+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV--QLAH 128
Query: 727 IGEK-GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWI--LSNAIMG 779
+ ++ LSGGQ+ R+ALARA+ I +LD+ A+DAQV RW+ L
Sbjct: 129 LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--- 185
Query: 780 PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L+ T + TH+ + A+ AD VVVM +G ++ G+ +
Sbjct: 186 ---LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 5e-15
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 20/220 (9%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
LH ++ T G G++G G+GKS++L L R P G+IL+D + + + +
Sbjct: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86
Query: 1269 FAVVPQSPFLFEG-SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1323
A +PQ EG ++R+ + P+H L + ++ V+E + VGL+
Sbjct: 87 VAYLPQQLPAAEGMTVRELVAIGRYPWH--GALGRFGAADREKVEEAISLVGLKPLAHRL 144
Query: 1324 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMTVIT 1380
S S G+RQ +A + + S+ L LDE T+ +D A +L + +S E +G+TVI
Sbjct: 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIA 203
Query: 1381 IAHRISTVLNM-----DEILILDHGHLVEQGNPQTLLQDE 1415
+ H I NM D ++ L G ++ QG P L++ E
Sbjct: 204 VLHDI----NMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 13/219 (5%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E +NVT R+ AL DI+F++E G G++G GAGK++ + + + G++L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1252 VDGLNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
DG P+ R R +P+ L+ + D L LK + + E
Sbjct: 59 FDG-----KPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR--IDE 111
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
+E + L + + S G +Q + A++ ++L LDE + +D +L++ I
Sbjct: 112 WLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI 171
Query: 1370 SS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
G TVI H++ V + D +L+L+ G V G
Sbjct: 172 RELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 7e-15
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
++ V+L + +G + +IG GSGK++ L I + T G I G
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 673 SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I YV Q P + T+ +NI +D + + + +VG D +
Sbjct: 76 KIGYVIQQIGLFPHL---TVAENIATVPKLLGWDKERIKKRADE------LLDLVGLDPS 126
Query: 726 YIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-ML 783
++ + LSGGQ+ R+ +ARA+ I ++D+ A+D + R L I L
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-ITRKQLQEEIKELQKEL 185
Query: 784 QKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
KT + TH++ A+ AD + VMD G++ + ++
Sbjct: 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223
|
Length = 309 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-15
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 23/212 (10%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP----Q 679
V L+ VSL + +G ++G G GK++LL I G T G I G I +P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP 73
Query: 680 VPWILSG-------TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
V + T+ +NI FG K E + LD +V + Y
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE-ALD-----LVQLE-GYANR 126
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
K LSGGQ+ R+A+ARA+ + + +LD+ L A+D ++ + + L T +
Sbjct: 127 KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186
Query: 790 CTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
TH+ + A++ +D + VM+KG+++ IG+ ++
Sbjct: 187 VTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 9e-15
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 11/226 (4%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1265
++D + I G I+G +G+GKS+ + L RL GQI +DG NI+ +L
Sbjct: 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 1266 --RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-KCHVKEEVEAVGLETFVKE 1322
R + +V Q LF L + +L W E K E ++ VGLE +
Sbjct: 68 VRRKKIGMVFQQFALFPH--MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR 125
Query: 1323 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1380
S G +Q + LARAL +L +DE + +D +Q+ + T++
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 1381 IAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFVR 1424
I H + + + D I+I+ G +V+ G P +L++ + + F+
Sbjct: 186 ITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 668
+N L VS + +G VA++G GSGKS++ + G + G I
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL 78
Query: 669 -HASGSIAYVPQVP--WILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGG 722
I + Q P + T+ D+I FG K P+ + + V +
Sbjct: 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME----- 133
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
Y+ ++ NLSGGQ+ R+A+A + +I + D+ S +D + R I IM
Sbjct: 134 --DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK--IM--VD 187
Query: 783 LQKTR----ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
L+KTR I TH++ AD V+V +G++ G ++
Sbjct: 188 LRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229
|
Length = 271 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 31/235 (13%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I NV R+ + A L DI+ I+ G V ++G +GAGKS++L + L G+I
Sbjct: 3 IRINNVKKRF-GAFGA-LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 1252 VDG---LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKI-WSV 1301
++G ++ N VRD R + V Q LF HM D+ LK+
Sbjct: 61 LNGRVLFDVSNLAVRD-R-KVGFVFQHYALF----------PHMTVADNIAFGLKVRKER 108
Query: 1302 LE----KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
+ V+E + V LE S GQRQ + LARAL KVL LDE +
Sbjct: 109 PSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 1358 DAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1409
DA+ L+ + + G+T + + H L + D +++L+ G + + G P
Sbjct: 169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPD 223
|
Length = 345 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-14
Identities = 62/278 (22%), Positives = 108/278 (38%), Gaps = 78/278 (28%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTPICGGQ 1249
+I +N+++ Y L +++ T+ G ++G+VGR GAGKS++L L L P G
Sbjct: 3 MITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH-- 1306
GL R + Q P L ++ D + + ++ +L +
Sbjct: 61 TRPKGL------------RVGYLSQEPPLDPEKTVLDYV----IEGFGELRELLAELEEA 104
Query: 1307 ------------------------------VKEEVEAVGLETFVKESGISFSVGQRQLIC 1336
+E + +G + S S G R+ +
Sbjct: 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVS-SLSGGWRRRVA 163
Query: 1337 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH------RISTVLN 1390
LARALL+ +L LDE T ++D ++ L++ + TVI ++H ++T
Sbjct: 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG--TVIVVSHDRYFLDNVAT--- 218
Query: 1391 MDEILILDHGHLVE-QGNPQTLLQDECSVFSSFVRAST 1427
IL LD G L +GN +SS++
Sbjct: 219 --HILELDRGKLTPYKGN-----------YSSYLEQKA 243
|
Length = 530 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 29/243 (11%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQ 1249
+I +N++ L ++ + G + I+G GAGKS++L AL L+P G+
Sbjct: 1 MIRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGE 57
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1304
+ ++G+ + + P +L AV+PQ+ PF + ++ P + ++
Sbjct: 58 VTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE----PEEDE 113
Query: 1305 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK------SSKVLCLDECTANVD 1358
+ + A L + S G++Q + LAR L + S + L LDE T+ +D
Sbjct: 114 RIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173
Query: 1359 -AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVEQGNPQTLL 1412
A L+ A +G V+ + H LN+ D I++L G ++ G+PQ +L
Sbjct: 174 IAHQHHTLRLARQLAREGGAVLAVLHD----LNLAAQYADRIVLLHQGRVIASGSPQDVL 229
Query: 1413 QDE 1415
DE
Sbjct: 230 TDE 232
|
Length = 259 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-14
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 28/222 (12%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
++D + +E G I+G +G+GKS+++ L RL G+ILVDG +I +LR
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102
Query: 1268 ----RFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSV-LEKCHVK--EEVEAV 1314
+ ++V QS L P H ++ L++ V + + E +E V
Sbjct: 103 LRRKKISMVFQSFALL---------P-HRTVLENVAFGLEVQGVPKAEREERALEALELV 152
Query: 1315 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AISS 1371
GLE + + S G +Q + LARAL +L +DE + +D + +Q+ + +
Sbjct: 153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 1372 ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
+ K T++ I H + L + D I I+ G +V+ G P+ +L
Sbjct: 213 KLK-KTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253
|
Length = 386 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-----PICGGQILVDGLNIINTPVR 1263
L +N I T ++G +G+GKS++L RL G++ +DG +I V
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 1264 DLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1321
+LR R +V Q P S+ +N+ +N +K L++ V+ +E L VK
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-RVRWALEKAQLWDEVK 137
Query: 1322 ES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1377
+ S GQ+Q +C+ARAL +VL DE TAN+D + + +++ K MT
Sbjct: 138 DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMT 197
Query: 1378 VITIAH------RISTVLNMDEILILDHGHLVEQG 1406
++ + H RIS D + L G +VE G
Sbjct: 198 IVLVTHFPQQAARIS-----DYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 1203 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICGGQILVDG--LNI 1257
P P L +NF E G + ++G GAGKS++ LN L R G +L+DG L+
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDY 58
Query: 1258 INTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG 1315
+ + R R +V Q P LF + ++ +N L V + V+E + AVG
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR--VREALTAVG 116
Query: 1316 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISS 1371
+ S G+++ + +A A+ VL LDE TA +D Q +IL+ +
Sbjct: 117 ASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1372 ECKGMTVITIAHRI 1385
GMTV+ H +
Sbjct: 177 ---GMTVVISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 38/214 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 676
L +SL +PKG + A+IG G GKS+LL +L + G +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 677 ------------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
V Q P G+I DN+ +G E L V+ +L
Sbjct: 74 VDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE---RVEEAL----RK 126
Query: 725 AYIGE------KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
A + + + LSGGQ+ RL LARA+ + ++ +LD+ SA+D ++ + I
Sbjct: 127 AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP-ISTAKIEELIA 185
Query: 779 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 811
+ T ++ THN+ QA AD + G++
Sbjct: 186 ELKK-EYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 2e-14
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 21/222 (9%)
Query: 1207 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL------NIINT 1260
A L DI I + GI+G +G+GKS++L L RL I +I VDG +I
Sbjct: 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83
Query: 1261 PVRDLRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVG 1315
LR +V Q P F S+ DN L + + +I ++E+C + VG
Sbjct: 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEEC-----LRKVG 138
Query: 1316 LETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1371
L V + S GQ+Q + +ARAL KVL +DE T+ +D + ++ I+
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198
Query: 1372 ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
+ ++ ++H V + D + L +G LVE G+ +
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 68/249 (27%), Positives = 100/249 (40%), Gaps = 26/249 (10%)
Query: 1182 LSPDWPF----QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1237
LS ++P GL N K A+ DI+F I G VG +G GAGKS+ L
Sbjct: 9 LSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLK 68
Query: 1238 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF---EGSLRDN--LDPFHM 1292
L L G++ V+G + P R R + + D LD +
Sbjct: 69 MLTGLLLPTSGKVRVNGKD----PFRR---REEYLRSIGLVMGQKLQLWWDLPALDSLEV 121
Query: 1293 NDDLKIWSVLEKCHVKEE----VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348
I+ + + E E + LE F+K S+GQR LA ALL KVL
Sbjct: 122 LK--LIYEIPDD-EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178
Query: 1349 CLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1405
LDE T +D + ++ + + TV+ H + + D +L++D G LV
Sbjct: 179 FLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238
Query: 1406 GNPQTLLQD 1414
G L +
Sbjct: 239 GTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV--RDLRGR 1268
D++ T+ G VG++G GAGK++ + + P G I++D +I P+ R RG
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG- 79
Query: 1269 FAVVPQSPFLFEG-SLRDNLDP-FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1326
+PQ +F S+ DNL + DDL + + E +E +E G S
Sbjct: 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLS--AEQREDRANELMEEFHIEHLRDSMGQS 137
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHRI 1385
S G+R+ + +ARAL + K + LDE A VD + ++ I G+ V+ H +
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197
Query: 1386 STVLNMDE-ILILDHGHLVEQGNPQTLLQDE 1415
L + E I+ GHL+ G P +LQDE
Sbjct: 198 RETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 21/215 (9%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNII--NTP 1261
L ++N I + ++G +G GKS+ + L R+ + G I +DG++I
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 1262 VRDLRGRFAVVPQSPFLFEGSLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1317
V +LR + +V Q P F S+ DN L +D+ I V+E ++A L
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEER-----VEESLKAAALW 133
Query: 1318 TFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1373
VK+ S + S GQ+Q +C+AR + S +V+ +DE + +D + + +++ I
Sbjct: 134 DEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK 193
Query: 1374 KGMTVITIAHRISTVLNMDEIL-ILDHGHLVEQGN 1407
+ T++ + H + + + +G ++E G
Sbjct: 194 EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGL 228
|
Length = 250 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 2e-14
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 20/213 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI--------------LGEMMLTHGSIH 669
N VL+ +SL + G L+A+IG+ G GK++LL +I + + LTH H
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 670 ASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
G + DN+ FG ++ + + + + GD A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL--GDAAA--H 133
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
LSGG + R+A+ARA+ D+ +LD+ LSA+DA + + L + IL
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 790 C-THN-VQAISAADMVVVMDKGQVKWIGSSADL 820
C TH+ A++ AD +M G++ G L
Sbjct: 194 CVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 21/195 (10%)
Query: 1196 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1255
N++ YK L D++ + G + + G+ GAGK+++ L L G IL++G
Sbjct: 4 NISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
Query: 1256 NIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1313
I ++ R V Q LF S+R+ L D E+ E
Sbjct: 63 PI---KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAG----------NEQAET 109
Query: 1314 V----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
V L + +S S GQ+Q + +A ALL +L DE T+ +D + + I
Sbjct: 110 VLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169
Query: 1370 SSECK-GMTVITIAH 1383
G VI I H
Sbjct: 170 RELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-14
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 28/227 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+LN +S +P G VA++GE G+GKS++L + + GSI G
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 673 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYI 727
+I VPQ + + TI NI +G+ + E A D SL G D +
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTG-V 393
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS--NAIMGPHMLQK 785
GE+G+ LSGG++ R+A+AR + I +LD+ SA+D + I + +
Sbjct: 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR---- 449
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
T ++ H + I AD ++V+D G++ G+ +L A LY+ W
Sbjct: 450 TTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496
|
Length = 497 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 48/226 (21%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L VSL + +G +VA++G G+GK++LL +I+G + G I G
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 673 -SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDM----- 724
IAYVP+ I T+ +N+L G + E D++ ++
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE------RDLEEVY----ELFPRLK 127
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV---LS-AVDAQVARWILSNAIMGP 780
++ LSGG++ LA+ARA+ + +LD+ L+ + ++ I
Sbjct: 128 ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI-------- 179
Query: 781 HMLQK----TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADLA 821
L+K T +L N + A+ AD V++ G++ G++A+L
Sbjct: 180 KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 1191 LIEFQNV--TMRYKPSL-----PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1243
L+E +N+ T RY+ L A+ ++FT+ G + I+G G+GKS++ L +
Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 1244 PICGGQILVDG--LNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLK 1297
G+IL++ L+ + R R R + P L G + D P +N DL+
Sbjct: 64 EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD--FPLRLNTDLE 121
Query: 1298 IWSVLEKCHVKEEVEAVGL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354
++ + E + VGL + GQ+Q + LARAL+ K++ DE
Sbjct: 122 PEQRRKQ--IFETLRMVGLLPDHANYYPH--MLAPGQKQRVALARALILRPKIIIADEAL 177
Query: 1355 ANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1411
A++D S L N + E +G++ I + I + ++ D++L++ G +VE+G+ +
Sbjct: 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
Query: 1412 LQD 1414
L
Sbjct: 238 LAS 240
|
Length = 267 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 15/236 (6%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG 1247
++ +N+ + Y AL+DI +I ++G +G GKS++L R L P C
Sbjct: 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 1248 --GQILVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNL--DP-FH-MNDDLKIW 1299
G IL +G NI+++ V LR + +V Q P F S+ +N+ P H + +
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123
Query: 1300 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+++EK +K ++ + +S +S S GQ+Q +C+AR L + +V+ +DE + +D
Sbjct: 124 TIVEKS-LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 1360 QTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH-GHLVEQGNPQTLLQD 1414
+ +++ I K TVI + H + + + + G L+E + ++
Sbjct: 183 IATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-14
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQVPWILS 685
L + G +VA++G G+GKS+LLN I G + GSI +G Y V +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 686 G-------TIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGGDMAYIGEKGVNL 734
T+R NI G + LK VD + VG Y+ L
Sbjct: 78 ENNLFAHLTVRQNIGLGLH-------PGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQL 129
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794
SGGQR R+ALAR + + I +LD+ SA+D + +L+ Q+T ++ TH++
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 795 Q-AISAADMVVVMDKGQVKWIG 815
A + A + V+ +G++K +
Sbjct: 190 SDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 3e-14
Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 22/244 (9%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICG-- 1247
+IE +N + Y A+ ++ I I+G +G GK+++L ++ R+ I G
Sbjct: 3 IIEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 1248 --GQILVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
G+I G +I + V + R + +V Q P F S+ DN+ +K L+
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 1304 KCHVKEEVEAVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+ V+E ++ L VK + G S GQ+Q +C+ARAL +V+ LDE T+ +D
Sbjct: 121 RI-VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179
Query: 1360 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQTL 1411
++ + + T++ + H I + + D I + G L+E G P+
Sbjct: 180 IATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNK 239
Query: 1412 LQDE 1415
L +E
Sbjct: 240 LTEE 243
|
Length = 250 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 4e-14
Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 29/235 (12%)
Query: 1194 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILV 1252
F N ++ P L +I+F +E G + + G TG+GKSS+L + L P G+I
Sbjct: 431 FSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKI-- 483
Query: 1253 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1312
GR + PQ+ ++ G+++DN+ D+ + SV++ C ++E++
Sbjct: 484 -----------KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIA 532
Query: 1313 AVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAI 1369
+ T + E GI+ S GQR I LARA+ K + + LD ++D T I ++ +
Sbjct: 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592
Query: 1370 SSECKGM---TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1421
CK M T I + ++ + D+IL+L G G LQ + FSS
Sbjct: 593 ---CKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE-LQAKRPDFSS 643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 4e-14
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWI 683
G VA++G G+GKS+L+N + G I G +IA V Q +
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420
Query: 684 LSGTIRDNILFGKNYDPQSYSETL-----KACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
+ +I DNI G+ P + E + +A D I G +GE+G LSGG+
Sbjct: 421 FNRSIEDNIRVGR---PDATDEEMRAAAERAQAHDF-IERKPDGYDTVVGERGRQLSGGE 476
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
R RLA+ARA+ I +LD+ SA+D + + A + M +T + H + +
Sbjct: 477 RQRLAIARALLKDPPILILDEATSALDVETEAKV--KAALDELMKGRTTFIIAHRLSTVR 534
Query: 799 AADMVVVMDKGQVKWIGSSADLA 821
AD ++V D G+V GS +L
Sbjct: 535 NADRILVFDNGRVVESGSFDELV 557
|
Length = 588 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 4e-14
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Query: 1207 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI-----LVDGLNIINTP 1261
A L +IN I G IVG+ G GKSS+L A+ G++ + T
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 1262 VRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GL 1316
R+ R A Q P+L ++ +N+ PF+ + +V + C ++ +++ + G
Sbjct: 75 SRN-RYSVAYAAQKPWLLNATVEENITFGSPFNKQ---RYKAVTDACSLQPDIDLLPFGD 130
Query: 1317 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISS--EC 1373
+T + E GI+ S GQRQ IC+ARAL +++ ++ LD+ + +D + ++Q I +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 1374 KGMTVITIAHRISTVLNMDEILILDHG 1400
T++ + H++ + + D I+ + G
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 4e-14
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 21/228 (9%)
Query: 1207 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV--RD 1264
AL DI+ +++ G V ++G +G GK+++L + L G I G +I P RD
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77
Query: 1265 LRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1319
+ +V QS LF ++ DN L M V E+ V E ++ VGL
Sbjct: 78 ----YGIVFQSYALFPNLTVADNIAYGLKNRGMGRA----EVAER--VAELLDLVGLPGS 127
Query: 1320 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMT 1377
++ S GQ+Q + LARAL S +L LDE + +DA+ L+ I + G+T
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187
Query: 1378 VITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFV 1423
I + H L+M D I++++HG + + G PQ + + + F + FV
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFV 235
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 27/229 (11%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L+D++ ++ G ++G G GKS++L RL G + + I R L R
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 1269 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL---EKCHVKEEVEAVGLETFVKESG 1324
A++PQ EG ++R+ L + + L +W L + V + +E +
Sbjct: 78 LALLPQHHLTPEGITVRE-LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL 136
Query: 1325 ISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQ--NAISSECKGMTV 1378
S GQRQ LA L + + V+ LDE T +D + +++ N +G TV
Sbjct: 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-----QGKTV 191
Query: 1379 ITIAHRISTVLNM-----DEILILDHGHLVEQGNPQTLLQDE--CSVFS 1420
+T+ H LN D +++L +GH++ QG P+ ++ +VF
Sbjct: 192 VTVLHD----LNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFD 236
|
Length = 255 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 4e-14
Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 41/220 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA-SGSIAYVPQ-- 679
+ VLNQ+ L +P G VAV+G G GKS+LL + G + G + A + +A +
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDT 83
Query: 680 ---------VPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+PW + DN+ G + + + L A L D A
Sbjct: 84 RLMFQDARLLPW---KKVIDNVGLGLKGQWRDAAL-QALAAVGL---------ADRA--N 128
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--- 785
E LSGGQ+ R+ALARA+ H + +LD+ L A+DA + R + + I + Q+
Sbjct: 129 EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA-LTRIEMQDLIES--LWQQHGF 185
Query: 786 TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVSL 824
T +L TH+V +A++ AD V+++++G++ DL V L
Sbjct: 186 TVLLVTHDVSEAVAMADRVLLIEEGKI-----GLDLTVDL 220
|
Length = 257 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 48/221 (21%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
E + L VS +P+G + +IG G+GKS+LL + G G++ G ++ +
Sbjct: 29 KGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL 88
Query: 678 --------PQVPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGG 722
P+ L+G R+NI + + E ++ L G
Sbjct: 89 LGLGGGFNPE----LTG--RENIYLNGRLLGLSRKEIDEKIDEIIEFSEL---------G 133
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA-------QVARWILSN 775
D +I S G +ARLA A A DI ++D+VL+ DA + R +L
Sbjct: 134 D--FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 776 AIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIG 815
KT IL +H+ +I D +V++KG++++ G
Sbjct: 192 G--------KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 5e-14
Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I+F+NV RY L + ++F ++ G G++G GAGK++ L L LT G I
Sbjct: 8 IDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSV---LEKCHV 1307
+ G + + R R R VVPQ DNLDP F + ++L ++ L
Sbjct: 66 LCG-EPVPSRARHARQRVGVVPQF---------DNLDPDFTVRENLLVFGRYFGLSAAAA 115
Query: 1308 KEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
+ V E LE S G ++ + LARAL+ VL LDE T +D Q
Sbjct: 116 RALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 1364 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE--CSV 1418
++ + S +G T++ H + + D + +++ G + +G P L++ E C V
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDV 234
|
Length = 306 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 27/234 (11%)
Query: 1194 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1253
F N+ + P L +IN IE G + I G TG+GK+S+L + G+I
Sbjct: 42 FSNLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--- 94
Query: 1254 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1313
GR + Q ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 95 ----------KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITK 144
Query: 1314 VGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAIS 1370
+ T + E GI+ S GQR I LARA+ K + + LD +D T I ++ +
Sbjct: 145 FPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV- 203
Query: 1371 SECKGM---TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1421
CK M T I + ++ + D+ILIL G G LQ FSS
Sbjct: 204 --CKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE-LQSLRPDFSS 254
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 6e-14
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
L VSL + G VA+IG G+GKS+LL + G + T GS+ G+
Sbjct: 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75
Query: 674 ----IAYVPQ-VPWILSGTIRDNILFGK------------NYDPQSYSETLKACTL--DV 714
I + Q I ++ +N+L G+ + + E +A V
Sbjct: 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE---EKQRALAALERV 132
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
+ D AY + LSGGQ+ R+A+ARA+ + + D+ ++++D S
Sbjct: 133 GLL-----DKAYQ--RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP-----ASS 180
Query: 775 NAIMG-----PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+M T I+ H V A AD +V + G++ + G A+L
Sbjct: 181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 7e-14
Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 60/243 (24%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 673
+ + + VS + G ++ ++GE GSGKS+L +++G +L G SG
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG--LLPEGGRITSGEVILDGR 75
Query: 674 -----------------IAYVPQVPWIL---SGTIRDNI-----LFGKNYDPQSYSETLK 708
IA + Q P TI D I L GK ++ ++
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135
Query: 709 ACTLDVDISLMVGGDMAYIGEKGVN------LSGGQRARLALARAVYHGSDIYMLDDVLS 762
L+ VG + + LSGG R R+ +A A+ + + D+ +
Sbjct: 136 L--LE-----QVG-----LPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 763 AVDAQVARWILSNAIMGPHMLQKTR----ILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817
A+D IL + + LQ+ + TH++ ++ AD VVVM KG++ G +
Sbjct: 184 ALDVTTQAQIL-DLLKD---LQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239
Query: 818 ADL 820
++
Sbjct: 240 EEI 242
|
Length = 539 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 8e-14
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 38/222 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
Q+ +L VSL +PKG + V+G G GK++LL +++G + + GSI G
Sbjct: 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE 71
Query: 674 -----IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM----VGGD 723
IAYVPQ I T+ +N+L G L + + + V +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTG--------LAALPRRSRKIPDEIYELFPVLKE 123
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
M +G +G +LSGGQ+ +LA+ARA+ + +LD+ + + + I I L
Sbjct: 124 M--LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIR---RL 177
Query: 784 QKTR----ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ +L + A AD VM++G+V G+ +L
Sbjct: 178 RAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 9e-14
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 34/214 (15%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
E N VL +S + G V ++G GSGKS+LL++ L ++ T G I G
Sbjct: 14 EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPL 72
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDP--QSYSETLKACTLDVDISLMVG---G 722
+ +PQ +I SGT R KN DP + E + +V + ++ G
Sbjct: 73 QKWRKAFGVIPQKVFIFSGTFR------KNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPG 126
Query: 723 DMAYIGEK-GVNLSGGQRARLALARAVYHGSDIYMLDDV---LSAVDAQVARWILSNAIM 778
+ ++ G LS G + + LAR+V + I +LD+ L + QV R L A
Sbjct: 127 QLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA 186
Query: 779 GPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
T IL H ++A+ +V+++ +V+
Sbjct: 187 DC-----TVILSEHRIEAMLECQRFLVIEENKVR 215
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 9e-14
Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 30/240 (12%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I+ + Y AL DI G + ++G +GAGKSS+L L L G +
Sbjct: 3 IQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 1252 VDG--LNIINTP----VRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLE- 1303
+ G + TP +RDLR +V Q L+ ++++NL + ++ + +
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL----IEAPCRVLGLSKD 116
Query: 1304 --KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--- 1358
++ ++ + L+ + + S GQ+Q + +ARAL+ +VL DE TA +D
Sbjct: 117 QALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
Query: 1359 -AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG------NPQT 1410
AQ SI++ + G+T + + H + ++ +++GH+VEQG PQT
Sbjct: 177 TAQIVSIIKELAET---GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQT 233
|
Length = 242 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 9e-14
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVR 1263
+ D+N +++ G + +VG +G+GKS A+ L P G+IL+DG + P+
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLS 58
Query: 1264 DLRGR-FAVVPQSPFLFEGSLRDNLDPF-----HMNDDLKIWSVLEK---CHVKEEVEAV 1314
+RGR A + Q+P R +P H + L+ L K + E +EAV
Sbjct: 59 -IRGRHIATIMQNP-------RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV 110
Query: 1315 GL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAIS 1370
GL E +K+ S G Q + +A ALL L DE T ++D A +L+
Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1371 -SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1413
+ G ++ I H + V + DE+ ++D G +VE+G + +
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 9e-14
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 37/228 (16%)
Query: 1202 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1261
L AL ++FT+E G + +VG +G GKS++ L + GG++ G +++
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83
Query: 1262 ---VRDLRGRFAVVPQSPFLFEGSL------RDNL-DPFHMNDDLKIWSVLEKCHVKEEV 1311
+ LR + +V Q+P+ GSL L +P +N L S E+ +E+
Sbjct: 84 PEAQKLLRQKIQIVFQNPY---GSLNPRKKVGQILEEPLLINTSL---SAAER---REKA 134
Query: 1312 EA----VGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1362
A VGL FS GQRQ I +ARAL+ V+ DE + +D AQ
Sbjct: 135 LAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL 194
Query: 1363 SI---LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
++ LQ + G++ + I+H +S V ++ DE++++ G VE+G
Sbjct: 195 NLMMDLQQEL-----GLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237
|
Length = 327 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINTPV 1262
ALH I+ E ++G +G GKS+ L L R+ G+I +G NI + +
Sbjct: 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 1263 R--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE------AV 1314
+LR +V Q P F S+ DN+ LKI V +K + + VE A+
Sbjct: 79 DLVELRKEVGMVFQQPTPFPFSVYDNV-----AYGLKIAGVKDKELIDQRVEESLKQAAI 133
Query: 1315 GLET--FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1372
ET + + +FS GQ+Q IC+ARAL KV+ LDE T+ +D ++S ++ +
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 1373 CKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
T I + H + + D+ L +G L+E G
Sbjct: 194 KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228
|
Length = 251 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 25/215 (11%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-PICG----GQILVDGLNIINTP- 1261
A+ I+ E ++G +G+GKS+ L +L R+ I GQIL G++I N
Sbjct: 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI-NRKE 93
Query: 1262 --VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1319
V ++R +V Q P F S+ +N+ +K VL++ V+ ++ L
Sbjct: 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-VETSLKQAALWDQ 152
Query: 1320 VKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1375
VK+ S ++ S GQ+Q +C+ARA+ +L +DE + +D + L+ + K
Sbjct: 153 VKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN 212
Query: 1376 MTVITIAH------RISTVLNMDEILILDHGHLVE 1404
T+I + H R S D G L+E
Sbjct: 213 YTIIIVTHNMQQAARAS-----DYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 1192 IEFQNVTMRYKPSLPA---ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1245
I+ +N+ + LP AL +++ I G + I+G+TG+GK++ LNAL L P
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--LLPD 60
Query: 1246 CG-----------------GQILVDGLNIINTPVR------DLRGRFAVVPQSPF----L 1278
G + +++ L I T + ++R R VV Q F L
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ--FAEYQL 118
Query: 1279 FEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLI 1335
FE ++ ++ P M + ++ + +E VGL E++++ S S GQ++ +
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKE--EAKKR--AAKYIELVGLDESYLQRSPFELSGGQKRRV 174
Query: 1336 CLARALLKSSKVLCLDECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNMDE- 1393
LA L L DE TA +D Q IL+ + +G T+I + H + VL +
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234
Query: 1394 ILILDHGHLVEQGNPQTLLQDE 1415
+ G +++ G+ +L D
Sbjct: 235 TIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
+ L V+L + +G +VA+IG G+GKS+LL S+ G + T G I +G
Sbjct: 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKE 75
Query: 674 -------IAYVPQVP-WILSGTIRDNILFGK-NYDP--QS----YSETLKACTLD----V 714
I + Q + ++ +N+L G+ Y +S +S+ KA LD V
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
I D AY + LSGGQ+ R+A+ARA+ I + D+ ++++D + A+ ++
Sbjct: 136 GIL-----DKAYQ--RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 775 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T I+ H V A AD ++ + G++ + G +++L
Sbjct: 189 ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 54/230 (23%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
L VSL +PKG + +IG G+GKS+L+ I G T GS+ G
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78
Query: 673 ----SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMV 720
I + Q +LS T+ +N+ K + E L+ +V
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLE----------LV 128
Query: 721 G----GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-- 774
G D AY LSGGQ+ R+ +ARA+ + + + D+ SA+D + + IL+
Sbjct: 129 GLEDKAD-AYPA----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183
Query: 775 ---NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
N +G T +L TH ++ + D V VM+KG+V G+ ++
Sbjct: 184 RDINRELGL-----TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ +L+ +SL L G ++A+ G+ G+GK++L + G + + GSI +G
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKER 69
Query: 673 --SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
SI YV Q + + ++R+ +L G L D+
Sbjct: 70 RKSIGYVMQDVDYQLFTDSVREELLLGL--KELDAGNEQAETVLK---------DLDLYA 118
Query: 729 EKGVN---LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPH 781
K + LSGGQ+ RLA+A A+ G D+ + D+ S +D +V I A G
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG-- 176
Query: 782 MLQKTRILCTHNVQAIS-AADMVVVMDKGQVK 812
K I+ TH+ + ++ D V+++ G +
Sbjct: 177 ---KAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 16/221 (7%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQ 1249
+ V Y+ LP + + G V I+G +GAGKS++LN A F + P G
Sbjct: 1 LALDKVRYEYE-HLPMEF---DLNVADGEIVAIMGPSGAGKSTLLNLIAGF-IEPA-SGS 54
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1308
I V+ + + +++ Q LF ++R N+ ++ LK+ + ++ V
Sbjct: 55 IKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVV 110
Query: 1309 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
+ + VG+ ++ S GQRQ + LAR L++ + +L LDE + +D +
Sbjct: 111 DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170
Query: 1369 ISSEC--KGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+ C + T++ + H +S + +I ++ G +
Sbjct: 171 VKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 13/231 (5%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +++ RYK AL ++ +I G++ ++G GAGKS++L L + G++
Sbjct: 5 IEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
V G + + +R + +V Q P +F ++ D++ +N L V + V+E
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR--VEE 121
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASIL 1365
++AV + F + S GQ++ + +A L V+ LDE A +D IL
Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181
Query: 1366 QNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415
+ + ++ G TVI H + D++++L G ++ +G+ L ++
Sbjct: 182 -DRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 46/218 (21%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-----FRLTPICGGQILVDGLNIINTPV- 1262
L +N TI+ G ++G G+GKS++ + + +T G+IL G +I + P
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72
Query: 1263 -RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1321
R G F + Q P E+ V F++
Sbjct: 73 ERARLGIF-LAFQYP--------------------------------PEIPGVKNADFLR 99
Query: 1322 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS---SECKGMTV 1378
FS G+++ + + LL + LDE + +D ++ I+ E K + +
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 1379 ITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1416
IT R+ + D + +L G +V+ G+ + L+ E
Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 68/242 (28%), Positives = 106/242 (43%), Gaps = 35/242 (14%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1246
+E +N+ + Y AL DI+ I +G +G GKS++L R L C
Sbjct: 26 LEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83
Query: 1247 GGQILVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
G+I +DG NI D LR R +V Q P F S+ +N+ L++ +
Sbjct: 84 EGEIRLDGQNI-YDKKVDVAELRRRVGMVFQRPNPFPKSIYENV-----VYGLRLQGINN 137
Query: 1304 KCHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
+ + E VE L VK E+ S GQ+Q + +ARA+ +VL LDE T+
Sbjct: 138 RRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197
Query: 1356 NVDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQ 1409
+D + ++ I+ T++ + H R+S D + G LVE G+
Sbjct: 198 ALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVS-----DYTAFMYMGKLVEYGDTD 252
Query: 1410 TL 1411
TL
Sbjct: 253 TL 254
|
Length = 272 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-13
Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 21/219 (9%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1265
+ +I+FT+ G +G+VG +G+GKS+ AL RL G+I DG + N R L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLP 359
Query: 1266 -RGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKI-WSVLEKCHVKEEV----EAVGLET 1318
R R VV Q P SL L+ + + L++ L +++V E VGL+
Sbjct: 360 VRHRIQVVFQDPN---SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416
Query: 1319 FVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSEC 1373
+ + FS GQRQ I +ARAL+ ++ LDE T+++D AQ ++L++ +
Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL--QQK 474
Query: 1374 KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1411
+ + I+H + V + ++++L G +VEQG+ + +
Sbjct: 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
|
Length = 529 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 24/210 (11%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---- 1247
+E +N+ + Y AL+DIN I ++G +G GKS+ L L R+ +
Sbjct: 5 MESKNLNLWY--GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62
Query: 1248 -GQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKI--- 1298
G++L+DG NI + V +LR R +V Q P F S+ DN+ H D K
Sbjct: 63 EGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK 122
Query: 1299 ---WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
W+ L+K + +EV+ +K+S + S GQ+Q +C+AR + V+ +DE T+
Sbjct: 123 IVEWA-LKKAALWDEVK-----DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176
Query: 1356 NVDAQTASILQNAISSECKGMTVITIAHRI 1385
+D + +++ + K T++ + H +
Sbjct: 177 ALDPISTLKIEDLMVELKKEYTIVIVTHNM 206
|
Length = 251 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 44/209 (21%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------ 679
L VSL + G LV V+G G GK++LLN I G + + GSI +G P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79
Query: 680 ------VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+PW+ + DN+ FG + + E V + G + YI +
Sbjct: 80 FQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE---GAEHKYIWQ- 132
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR---------WILSNAIMGPH 781
LSGG R R+ +ARA+ + +LD+ A+DA W +
Sbjct: 133 ---LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG------ 183
Query: 782 MLQKTRILCTHNV-QAISAADMVVVMDKG 809
K +L TH++ +A+ A +VV+ G
Sbjct: 184 ---KQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 56/224 (25%), Positives = 107/224 (47%), Gaps = 26/224 (11%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-----TPICGGQILVDGLNIINTPV 1262
ALH ++ I G V ++G +G+GKS++L L L + ++L +
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78
Query: 1263 RDLRGRFAVVPQSPFLFEG-------SLRDNL-------DPFHMNDDLKIWSVLEKCHVK 1308
RD+R A + ++F+ S+ +N+ PF ++ +K
Sbjct: 79 RDIRKSRA---NTGYIFQQFNLVNRLSVLENVLIGALGSTPF-WRTCFSWFTREQKQRAL 134
Query: 1309 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
+ + VG+ F + + S GQ+Q + +ARAL++ +KV+ DE A++D ++A I+ +
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 1369 IS--SECKGMTVITIAHRISTVLNMDE-ILILDHGHLVEQGNPQ 1409
+ ++ G+TV+ H++ L E I+ L GH+ G+ Q
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238
|
Length = 262 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (174), Expect = 3e-13
Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 18/203 (8%)
Query: 1224 IVGRTGAGKSSILNALFRLT-PICG----GQILVDGLNIIN-TPVRDLRGRFAVVPQSPF 1277
++G TG+GK++ L L R+ + G G +L+ G +I N V + R R ++ Q P
Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111
Query: 1278 LFEGSLRDNLDP---FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVG 1330
F S+ DN+ H K + + + + E VGL VK+ S S G
Sbjct: 112 PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTE----VGLWDAVKDRLSDSPFRLSGG 167
Query: 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1390
Q+QL+CLAR L + +VL LDE T+ +D T ++ I S +TVI + H ++
Sbjct: 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAAR 227
Query: 1391 M-DEILILDHGHLVEQGNPQTLL 1412
+ D + G LVE+G + L
Sbjct: 228 ISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 4e-13
Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 24/239 (10%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I+ V+ Y + ++D++FTI G G++G GAGKS+I L + G+I
Sbjct: 5 IDLVGVSKSYGDKV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSVLEKCHVKEE 1310
V G + + R R VVPQ DNLDP F + ++L ++ +E
Sbjct: 63 VLG-EPVPSRARLARVAIGVVPQF---------DNLDPEFTVRENLLVFGRYFGMSTREI 112
Query: 1311 VEAVG-------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
+ LE+ S G ++ + LARAL+ ++L LDE T +D
Sbjct: 113 EAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARH 172
Query: 1364 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE--CSV 1418
++ + S +G T++ H + + D + +L+ G + +G P L+ ++ C+V
Sbjct: 173 LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNV 231
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 40/247 (16%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICG--- 1247
IE +N+ ++ LH I+ ++ G V I+G +G+GK+++L + L P G
Sbjct: 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 1248 -GQILVDG---LNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNL--DPFHMNDDLKIWS 1300
G I +D L+ +R LR V Q+ LF ++ +N+ P
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP----------- 110
Query: 1301 VLEKCHVKEEVEAVGLETFVKESGIS---------FSVGQRQLICLARALLKSSKVLCLD 1351
V+ K KEE A E K G++ S GQ+Q + +ARAL +V+ D
Sbjct: 111 VIVKGEPKEEATARARELLAK-VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD 169
Query: 1352 ECTANVDAQTASILQNAISS---ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1407
E T+ +D + + N I E + M ++T H +S ++ D + +D G +VEQG
Sbjct: 170 EPTSALDPELVGEVLNTIRQLAQEKRTMVIVT--HEMSFARDVADRAIFMDQGRIVEQGP 227
Query: 1408 PQTLLQD 1414
+ L D
Sbjct: 228 AKALFAD 234
|
Length = 250 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-13
Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 63/312 (20%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP---- 678
V++ + L + G + ++G G GK+++L I G G I G I +VP
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR 86
Query: 679 QVPWILSG-------TIRDNILFG--------KNYDPQSYSETLKACTLDVDISLMVGGD 723
V + T+ +N+ FG P+ E L+ L+ +
Sbjct: 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR-VMEALRMVQLE---------E 136
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
A K LSGGQ+ R+A+ARAV + + +LD+ LSA+D ++ R + N + L
Sbjct: 137 FA--QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKL-RKQMQNEL---KAL 190
Query: 784 QK----TRILCTHNV-QAISAADMVVVMDKGQVKWIGS-------SADLAVSLYSGFWST 831
Q+ T + TH+ +A++ +D +VVM G+++ G+ +L V+ + G
Sbjct: 191 QRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIG--EI 248
Query: 832 NEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQ-----------EIIEVEQRK 880
N FD ++ + E R A+ ++ + V EI + E +
Sbjct: 249 NIFDATVIERLDEQRVRANVEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEINDDEHAE 308
Query: 881 E--GRVELTVYK 890
G V YK
Sbjct: 309 GLIGYVRERNYK 320
|
Length = 375 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 5e-13
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 29/241 (12%)
Query: 1202 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1261
K ++D++ + G I+G +G+GKS++L + RL G++L+DG +I
Sbjct: 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS 92
Query: 1262 VRDLRG----RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE------- 1310
++LR + ++V QS L P H + LE V
Sbjct: 93 RKELRELRRKKISMVFQSFALL---------P-HRTVLENVAFGLEVQGVPRAEREERAA 142
Query: 1311 --VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN- 1367
+E VGLE + + S G +Q + LARAL +L +DE + +D +Q+
Sbjct: 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202
Query: 1368 --AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFV 1423
+ +E T++ I H + L + D I I+ G LV+ G P+ +L + + + F
Sbjct: 203 LLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFF 261
Query: 1424 R 1424
R
Sbjct: 262 R 262
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (173), Expect = 5e-13
Identities = 59/228 (25%), Positives = 112/228 (49%), Gaps = 9/228 (3%)
Query: 1191 LIEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
++E +N+ +Y K S L+ ++F+I G V I+G+ G+GKS+ + L G+
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHV 1307
+ +DG + V +LR + +V Q+P F G+ ++ F M N + ++++ V
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--V 121
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
E + AV + F S GQ+Q + +A + +++ LDE T+ +D +
Sbjct: 122 DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 1368 AISSECKG---MTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1412
I E K +TV++I H + + D IL++ G ++++ P L
Sbjct: 182 VIH-EIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 17/214 (7%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
AL +++F + G VG +G GAGKS+ + + P G + V G +++ P +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQR 75
Query: 1268 RFAVVPQ-SPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVEAVGL--ETFV 1320
+P+ +P + +R+ L + M L K V+E +E VGL E
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLL------KQRVEEMIELVGLRPEQHK 129
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1380
K + S G RQ + LA+AL+ KVL LDE T +D ++N I + K T+I
Sbjct: 130 KIGQL--SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIIL 187
Query: 1381 IAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1413
H + V + D ++I++ G +V L
Sbjct: 188 STHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 6e-13
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
V L+ VS + G + +IG G+GK++L N I G + T GS+ G
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA 73
Query: 674 ---IAYVPQVPWILSG-TIRDNILFG------KNYDPQSYSETLKACTLDVDISL-MVG- 721
I Q+P + T+ +N++ + + L VG
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAI 777
D+A LS GQ+ RL +ARA+ + +LD+ + ++ ++A I
Sbjct: 134 ADLAD--RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191
Query: 778 MGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQV 811
G T +L H++ + S AD V V+D+G+V
Sbjct: 192 RG-----ITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 73/229 (31%), Positives = 110/229 (48%), Gaps = 39/229 (17%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTP--ICGGQILVDGLNIINTPV 1262
AL +IN I +G +G GKS++L N ++ L P G+IL+DG NI+ TP
Sbjct: 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL-TPK 86
Query: 1263 RD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVG 1315
+D LR + +V Q P F S+ DN+ F ++++ L + + E VE
Sbjct: 87 QDIALLRAKVGMVFQKPTPFPMSIYDNI-AF----GVRLFEKLSRAEMDERVEWALTKAA 141
Query: 1316 LETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA-QTASILQNAIS 1370
L VK+ SG S S GQ+Q +C+AR + +VL LDE + +D T I + +
Sbjct: 142 LWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE--LI 199
Query: 1371 SECKG-MTVITIAHRISTVLNM-------DEILILDHGHLVEQGNPQTL 1411
+E K TV+ + H NM D + G L+E GN T+
Sbjct: 200 TELKQDYTVVIVTH------NMQQAARCSDYTAFMYLGELIEFGNTDTI 242
|
Length = 260 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 58/239 (24%), Positives = 102/239 (42%), Gaps = 32/239 (13%)
Query: 1191 LIEFQNVTMRYKPSL-------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1243
L+E ++VT Y+ L +++ +IE G VG++GR+G GKS++ L L
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 1244 PICGGQILVDGLNIINTP-------VRDLRGRF-----AVVPQSPFLFEGSLRDNL-DPF 1290
G + G ++ RD++ F AV P+ ++R + +P
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM------TVRQIIGEPL 115
Query: 1291 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES-GISFSVGQRQLICLARALLKSSKVLC 1349
L + + E ++ VGL + + S GQ Q I +ARAL K++
Sbjct: 116 RHLTSLDESEQKAR--IAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV 173
Query: 1350 LDECTANVDA--QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1405
LDE +N+D Q + + G + I H + V + + ++D G +VE+
Sbjct: 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 6e-13
Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 1202 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1261
K L + D + IE G I+G +G+GKS+++ L RL GQ+L+DG++I
Sbjct: 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS 96
Query: 1262 VRDL----RGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGL 1316
+L R + A+V QS L ++ DN F M + I + + + + VGL
Sbjct: 97 DAELREVRRKKIAMVFQSFALMPHMTVLDN-TAFGM-ELAGINAEERREKALDALRQVGL 154
Query: 1317 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA-ISSECKG 1375
E + S G RQ + LARAL + +L +DE + +D + +Q+ + + K
Sbjct: 155 ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH 214
Query: 1376 M-TVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
T++ I+H + + + D I I+ +G +V+ G P +L +
Sbjct: 215 QRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
Length = 400 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 6e-13
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 28/207 (13%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------- 679
L V+L + +G +++IG G GKS+LLN I G T G + G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 680 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA--YIGEKGV 732
+PW+ T+R+NI + S++ + ++ I+L+ + A G+
Sbjct: 61 QNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ--- 114
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC-- 790
LSGG + R+A+ARA+ + +LD+ A+DA + R L +M + ++ R+
Sbjct: 115 -LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA-LTRGNLQEELM--QIWEEHRVTVLM 170
Query: 791 -THNV-QAISAADMVVVMDKGQVKWIG 815
TH+V +A+ +D VV++ G IG
Sbjct: 171 VTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 7e-13
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 642 VIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG--------------T 687
++G G GK++LL + G GSI G V VP L T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE--DVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 688 IRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747
+ +N+ FG +K L+ + L+ + A K LSGGQ+ R+ALARA
Sbjct: 59 VEENVAFGLKMRKVP-RAEIKPRVLEA-LRLVQLEEFA--DRKPHQLSGGQQQRVALARA 114
Query: 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVM 806
+ I +LD+ LSA+D ++ + L T + TH+ +A++ +D + +M
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 807 DKGQVKWIGSSADL 820
KG++ IG+ ++
Sbjct: 175 RKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 7e-13
Identities = 101/509 (19%), Positives = 177/509 (34%), Gaps = 57/509 (11%)
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
F LC+ + + A+ + + L KI+ AP+ D+ ++
Sbjct: 57 FSFGGLCLLALLFR---IGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLI 113
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1059
+ D+ I+ L I +A + IA L+Y+ V + + I + Q
Sbjct: 114 PLLTHDIDQINAFLFIFPPIAIALAIFFFCIAY-LAYLSVPMFAITISAIIIGTAAQLLA 172
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIR--AFKSEDYFMAKFKEHVVLYQRTSYS 1117
+ G+ ++ + + +E
Sbjct: 173 FMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232
Query: 1118 ELTASLW---------LSLRLQVGLALSYAAPIVSL------------------LGNFLS 1150
E+ L L L +G AL AA S+ L +S
Sbjct: 233 EI---LIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVS 289
Query: 1151 SFTETEKEMVSLERVLEY---MDVPQEELC-----GYQSLSPDWPFQGLIEFQNVTMRYK 1202
+ + ++ +R+ ++ + P+ EL L+ D IE ++V M K
Sbjct: 290 ALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSV-DSIELKDVHMNPK 348
Query: 1203 P---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1259
S AL I+ I G V IVG G GKS++ L G+IL+DG +
Sbjct: 349 APEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408
Query: 1260 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW-SVLEKCHVKEEVEAVGLET 1318
D R F+ + LF+ + + D+ + + LE K ++E G T
Sbjct: 409 DSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIAD-KVKIEDGGFST 467
Query: 1319 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GM 1376
+ S GQ++ + L A L+ +L DE A+ D + + K G
Sbjct: 468 TT-----ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGK 522
Query: 1377 TVITIAHRISTVLNMDEILILDHGHLVEQ 1405
T+I I+H D+I+ L G +V+
Sbjct: 523 TIIIISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 8e-13
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 22/217 (10%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI------INTPVRD 1264
D +FT+ G I GR+G+GK++++ + LT G+I+++G + I P
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPE- 73
Query: 1265 LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETFVKE 1322
+ R V Q LF S+R NL +K E+ E V E +G+ +
Sbjct: 74 -KRRIGYVFQEARLFPHLSVRGNL-----RYGMKRARPSERRISFERVIELLGIGHLLGR 127
Query: 1323 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTV 1378
S G++Q + + RALL S ++L +DE A +D + L+ + +E G+ +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER-LHAEF-GIPI 185
Query: 1379 ITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+ ++H + VL + D +++L+ G + G +
Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 8e-13
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG- 1247
I QNVT+ Y A+ ++ I G ++G +G GKS++L +L R L C
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1248 -GQILVDGLNIINT---PVRDLRGRFAVVPQSPFLFEGSLRDNL------DPFHMNDDLK 1297
G++L DG ++ + PV ++R R +V Q P F S+ +N+ + + + D
Sbjct: 72 KGRVLFDGTDLYDPRVDPV-EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 1298 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
+ L K V +E + + ESG S S GQ+Q +C+AR + +V+ +DE + +
Sbjct: 131 VERSLRKAAVWDECKDK-----LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSAL 185
Query: 1358 DAQTASILQNAISSECKGMTVITIAH 1383
D + ++ + K T++ + H
Sbjct: 186 DPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 9e-13
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG---SIHASGSIAYVPQVP 681
V++ +S +P G+ + + G G GKSSL ILGE+ +G + A G + YVPQ P
Sbjct: 466 VLIESLSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRP 524
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGDMAYIGEKGVN------- 733
++ GT+RD I++ P S + + D D ++ + +I E+
Sbjct: 525 YMTLGTLRDQIIY-----PDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDW 579
Query: 734 ---LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 776
LSGG++ R+A+AR YH +LD+ SAV V ++
Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 30/225 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673
L+ VS + G VA++G G+GKS+L + + + G I +G
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75
Query: 674 IAYVPQVPWI-LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+ V Q P + L ++R N+ + + S + ++ + + A +K
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRY--HAALHGLSRAEARARIAELLARLGLAERA--DDKVR 131
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC-- 790
L+GG R R+ +ARA+ H + +LD+ +D I ++ L + + L
Sbjct: 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV----RALARDQGLSVL 187
Query: 791 --THNVQAISAADMVVVMDKGQVKWIGSSADL-----AVSLYSGF 828
TH V I A D +VV+ +G+V G++A+L L + F
Sbjct: 188 WATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAF 232
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVPWILSGTIR 689
L +G + A++G GSGKS+LLN I G G + +G + P +S +
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 690 DNILFGKNYDPQSY----SETLKACTLD---VDISLMVGGDMAYIGEKGVNLSGGQRARL 742
+N LF Q+ S LK D ++++L G LSGG+R R+
Sbjct: 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRV 137
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHNVQAISA-A 800
ALAR + + +LD+ +A+D R + + ++ H K T ++ TH + A
Sbjct: 138 ALARVLVRDKPVLLLDEPFAALDP-ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA 196
Query: 801 DMVVVMDKGQVKWIG 815
VV +D G++ G
Sbjct: 197 QRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH--ASGSIAYVP 678
+ ++L +S + +G +A++G G+GKS+LL + GE+ G++ + I Y
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFD 391
Query: 679 Q--VPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-L 734
Q T+ + + + D Q L G+ EK V L
Sbjct: 392 QHRDELDPDKTVLEELSEGFPDGDEQEVRAYLG--------RFGFTGEDQ---EKPVGVL 440
Query: 735 SGGQRARLALARAVYHGSDIYMLD 758
SGG++ARL LA+ + ++ +LD
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLD 464
|
Length = 530 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 32/228 (14%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNIINT-- 1260
AL D++ I ++G +G GKS+ L + R L G++ G N+ +
Sbjct: 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113
Query: 1261 -PVRDLRGRFAVVPQSPFLFEGSLRDN------LDPFHMNDDLKIWSVLEKCHVKEEVEA 1313
PV LR R +V Q P F S+ DN + + + D ++ L + + +EV+
Sbjct: 114 DPVA-LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD 172
Query: 1314 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1373
+ SG+ S GQ+Q +C+ARA+ +V+ +DE + +D S +++ I
Sbjct: 173 Q-----LDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 1374 KGMTVITIAH------RISTVLNMDEILI-LDHGHLVEQGNPQTLLQD 1414
+ TV+ + H RIS D+ + L G LVE + + ++
Sbjct: 228 EEYTVVIVTHNMQQAARIS-----DKTAVFLTGGELVEFDDTDKIFEN 270
|
Length = 285 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 64/240 (26%), Positives = 92/240 (38%), Gaps = 44/240 (18%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
GLI + K AL I+FTIE G VG +G GAGK++ L L L G+
Sbjct: 18 GLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE 77
Query: 1250 ILVDGLNIINTPVRDLRGRFAVV------------PQSPFLFEGSLRD--NLDPFHMNDD 1295
+ V GL + + R VV F L +L P
Sbjct: 78 VRVAGL-VPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL---LAAIYDLPPARF--- 130
Query: 1296 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
K + E E + LE + S+GQR +A ALL ++L LDE T
Sbjct: 131 --------KKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
Query: 1356 NVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEI-------LILDHGHLVEQG 1406
+D ++N + + G TV+ +H M +I L++D G L+ G
Sbjct: 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSH------YMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-----QILVDGLNII-NTP 1261
AL IN I ++G +G GKS++L L R+ + G ++ +DG +I N
Sbjct: 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77
Query: 1262 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVGLE 1317
V DLR + +V Q P F S+ +N+ L+ + +K + E VE L
Sbjct: 78 VADLRIKVGMVFQKPNPFPMSIYENV-----AYGLRAQGIKDKKVLDEVVERSLRGAALW 132
Query: 1318 TFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1373
VK+ S GQ+Q +C+AR + V+ +DE T+ +D ++ +
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 1374 KGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414
K T++ + H RIS D G LVE + Q + +
Sbjct: 193 KNYTIVIVTHSMQQARRIS-----DRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 54/239 (22%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672
+ L+ VSL +PKG + +IG G+GKS+LL I T GS+ G
Sbjct: 11 FGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDL 70
Query: 673 -------------SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACT 711
I + Q +LS T+ +N+ F K Q +E L+
Sbjct: 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLE--- 127
Query: 712 LDVDISLMVGGDMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
+VG + +K LSGGQ+ R+A+ARA+ + I + D+ SA+D +
Sbjct: 128 -------LVG-----LSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
Query: 768 VARWILS-----NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
+ IL N +G T +L TH ++ + D V V+D+G++ G+ +++
Sbjct: 176 TTQSILELLKDINRELG-----LTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 651 SSLLNSILGEMMLTHGSIHASG--------------SIAYVPQVPWI-LSGTIRDNILFG 695
S+LL I G + T G+I G I V Q P + T+R+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 696 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755
+ +A VG E LSGGQ+ R+A+ARA+ +
Sbjct: 61 LRDKEAD-ARAEEALE-------RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 756 MLDD 759
+LD+
Sbjct: 113 LLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 40/238 (16%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1247
L+E + ++ + + +++ TI G + ++G +G GK+++L RL I G
Sbjct: 14 LVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVL----RL--IAGFET 65
Query: 1248 ---GQILVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSV 1301
G+I++DG +I + P R + F QS LF ++ +N+ F L++
Sbjct: 66 PDSGRIMLDGQDITHVPAENRHVNTVF----QSYALFPHMTVFENV-AF----GLRMQKT 116
Query: 1302 LE---KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
V E + V LE F + S GQ+Q + +ARA++ KVL LDE + +D
Sbjct: 117 PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Query: 1359 AQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1409
+ L+ + +E K G+T + + H L M D I+++ G + + G P+
Sbjct: 177 YK----LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
Length = 375 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 49/251 (19%)
Query: 1186 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1245
W +Q P A+ + + G +G+VG +G GKS+ A+ L
Sbjct: 26 WFWQ------------PPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA 73
Query: 1246 CGGQILVDG---LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN------DDL 1296
G++ G L + + R +R ++ Q P +L+P M + L
Sbjct: 74 TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA-------SLNP-RMTIGEIIAEPL 125
Query: 1297 KIW-SVLEKCHVKEEVEA----VGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1350
+ + L + VK+ V+A VGL + FS GQ Q I +ARAL+ K++
Sbjct: 126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIIC 185
Query: 1351 DECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1405
DE + +D AQ ++LQ + E G+++I IAH ++ V ++ D +L++ GH VE
Sbjct: 186 DEPVSALDVSIQAQVVNLLQ-QLQREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243
Query: 1406 G-------NPQ 1409
G NP
Sbjct: 244 GTYDEVYHNPL 254
|
Length = 331 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
LIE +NV++R L D+++ + G IVG GAGK+++L+ L P G +
Sbjct: 31 LIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1251 LVDGLNIINTPV-RDLRGRFAVVPQSPFLFEGSLRDN-------LDPFHMNDDLKIW--- 1299
+ G +LR R +V S L E R L F + I+
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLV--SSELHE-RFRVRETVRDVVLSGFF--ASIGIYQED 143
Query: 1300 ---SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
L +E +G + S S G+++ + +ARAL+K ++L LDE
Sbjct: 144 LTAEDLAAAQ--WLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201
Query: 1357 VD----AQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVEQG 1406
+D Q + L+ +++ ++ + H + L+L G +V QG
Sbjct: 202 LDLIAREQLLNRLEE-LAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-12
Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 53/231 (22%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
VL V L + +G ++A+IG GSGKS+LL I+G + G + G
Sbjct: 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAEL 72
Query: 674 ------IAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG 721
+ + Q SG T+ +N+ F P L + +I L
Sbjct: 73 YRLRRRMGMLFQ-----SGALFDSLTVFENVAF-----PLREHTRLSEEEIR-EIVLEK- 120
Query: 722 GDMAYIGEKGV------NLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARW 771
+ +G +G LSGG + R+ALARA+ ++ + D+ + +D +
Sbjct: 121 --LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 772 ILS-NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
I S L T I+ TH++ + AD + V+ G++ G+ +L
Sbjct: 179 IRSLKK-----ELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 3e-12
Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 48/191 (25%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
L+ VSL + +G + A++GE G+GKS+L+ + G G I
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL--------------- 58
Query: 685 SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744
+ GK S + +A G M Y LS G+R + +
Sbjct: 59 --------VDGKEVSFASPRDARRA-----------GIAMVY------QLSVGERQMVEI 93
Query: 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHNVQAISA-A 800
ARA+ + + +LD+ +A+ + ++ L+ I +H + + A
Sbjct: 94 ARALARNARLLILDEPTAALTPAEVERLF--KVI--RRLRAQGVAVIFISHRLDEVFEIA 149
Query: 801 DMVVVMDKGQV 811
D V V+ G+V
Sbjct: 150 DRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 15/197 (7%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP------ 678
VL V + G V + G GSGKSSL + + + G I G I+ +P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95
Query: 679 ------QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
Q P + SG+IR N+ E L+ L + + GG A + E G
Sbjct: 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGE 155
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
N S GQR LARA S I ++D+ +++D IL +M +T + H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN-ILQKVVMTA-FADRTVVTIAH 213
Query: 793 NVQAISAADMVVVMDKG 809
V I AD+V+V+ +G
Sbjct: 214 RVSTILDADLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 4e-12
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 40/153 (26%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS----IHASGSIAYV 677
+ V+L +S + G + + G G+GKSSL ++ G + GS + + ++
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRIGMPEGEDLLFL 69
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737
PQ P++ GT+R+ +++ P DV LSGG
Sbjct: 70 PQRPYLPLGTLREQLIY-----PWD----------DV-------------------LSGG 95
Query: 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
++ RLA AR + H LD+ SA+D +
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESED 128
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 27/208 (12%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQVPWILS 685
L +P G +VA++G G+GKS+LLN I G G I + S V +
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 686 G-------TIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGGDMAYIGEKGVNL 734
T+ NI G S LK + VG ++ L
Sbjct: 79 ENNLFAHLTVAQNIGLGL-------SPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGEL 130
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHN 793
SGGQR R+ALAR + I +LD+ SA+D R + + +K T ++ TH+
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 794 VQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ A AD VV +D G++ GS+ +L
Sbjct: 190 PEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 673
E+++ LN VS + +G +++IG GSGKS+ + I G + G I G
Sbjct: 15 KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE 74
Query: 674 --------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q P + T+ D++ FG + E + V+ +L + G
Sbjct: 75 NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER----VNEALELVGM 130
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHM 782
+ + LSGGQ+ R+A+A AV I +LD+ S +D + R L I G
Sbjct: 131 QDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-GRLELIKTIKGIRDD 189
Query: 783 LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
Q T I TH++ ++ +D V+VM GQV+ + +L
Sbjct: 190 YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 4e-12
Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 13/231 (5%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-- 1247
G I ++ + Y + L D++ IE G + ++G++G GK+++L A+ G
Sbjct: 4 GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1248 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1306
G+I + ++ + P RG A++ Q+ LF + DN+ F + K+
Sbjct: 62 GRIAIADRDLTHAPPHK-RG-LALLFQNYALFPHLKVEDNV-AFGLRAQ-KMPKADIAER 117
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASIL 1365
V + ++ VGL S G +Q I +ARA+ VL LDE + +DA A++
Sbjct: 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMR 177
Query: 1366 QN--AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1413
+ A+ E +T++ + H L + D+ I+ G L G PQ L
Sbjct: 178 EEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 5e-12
Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 44/226 (19%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVP 681
VL +SL + KG +V +IG GSGKS+LL + G GSI G + +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 682 WILSG--------------TIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGGD 723
+ T+ +N+ K E L+ VG
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL-LE-----KVG-- 125
Query: 724 MAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSN 775
+ +K LSGGQ+ R+A+ARA+ + + D+ SA+D +V +
Sbjct: 126 ---LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182
Query: 776 AIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
A G T I+ TH + A AD V+ MD+G++ G +
Sbjct: 183 AEEG-----MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 22/213 (10%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSS---LLNSILGEMMLTHGSIHASG---------- 672
LN +S +P+GS A+IG GSGKS+ L+N +L + I G
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
+ V Q P + T+ D++ FG E +K V L G + YI
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI----VRDVLADVGMLDYI 137
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
+ NLSGGQ+ R+A+A + I +LD+ S +D IL T
Sbjct: 138 DSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTV 197
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
I TH++ + AD V+V+D G++ GS ++
Sbjct: 198 ISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 22/212 (10%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+ +IE +N+ + Y AL++IN I + ++G +G GKS+ L L R+ + G
Sbjct: 5 EAIIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG 62
Query: 1249 -----QILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLD---PFH-MNDDLK 1297
++ +G NI N + +LR + +V Q+P F S+ DN+ H D K
Sbjct: 63 IKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKK 122
Query: 1298 IWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDEC 1353
+ ++E+ K L VK+ + +S S GQ+Q +C+AR L V+ +DE
Sbjct: 123 LDEIVEQSLKKS-----ALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 1354 TANVDAQTASILQNAISSECKGMTVITIAHRI 1385
T+ +D + ++ I + + T+I + H +
Sbjct: 178 TSALDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 6e-12
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 23/230 (10%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----- 1245
+I +V + Y AL I+ ++G +G GKS+ L L R+ +
Sbjct: 5 IITSSDVHLFYGKF--EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 1246 CGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
G + + G NI N V LR + +V Q P F S+ +N+ L++ V +
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIY-----GLRLAGVKD 117
Query: 1304 KCHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
K + E VE + VK ES +S S GQ+Q +C+AR L V+ LDE T+
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177
Query: 1356 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1404
+D +++ ++N + T+I + H + + D+ G+L+E
Sbjct: 178 ALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 6e-12
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTP--ICGGQILVDGLNIINTPV 1262
AL +IN +I I+G +G GKS+ LN + ++ P G++ +G NI+ V
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 1263 R--DLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVE----AV 1314
+LR +V Q F S+ DN+ P +I K ++E VE V
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGP-------RIHGTKNKKKLQEIVEKSLKDV 139
Query: 1315 GLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
L VK+ +S S GQ+Q +C+ARAL + VL +DE T+ +D + ++ I
Sbjct: 140 ALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199
Query: 1371 SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1407
+ T++ + H + + D+ G LVE +
Sbjct: 200 KLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECND 237
|
Length = 259 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 47/241 (19%)
Query: 1191 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
L++ +N+ RY+ L ++ +I G V IVG +G+GKS++L+ L L G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 1249 QILVDG--LNIINTPVR-DLRGR-FAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVL 1302
++L +G L+ +++ R LR + + Q FH + D ++ L
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQ---------------FHHLLPD----FTAL 101
Query: 1303 E------------KCHVKEE----VEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346
E KE +E VGLE + S G+RQ + +ARAL+
Sbjct: 102 ENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161
Query: 1347 VLCLDECTANVDAQTASILQNAI---SSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1403
++ DE T N+D A I+ + + + E + + + H + +D +L + G L
Sbjct: 162 LVLADEPTGNLDNNNAKIIFDLMLELNRE-LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
Query: 1404 E 1404
Sbjct: 221 N 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-12
Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 45/227 (19%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
++ VS L +G + ++GE GSGKS+L + G + + GSI G
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365
Query: 674 ---IAYVPQVP-----------WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
I V Q P IL+ +R + +E L+ L +
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF--- 422
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
D Y E LSGGQR R+A+ARA+ + +LD+ +SA+D V +L N +
Sbjct: 423 --LDR-YPHE----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL-NLLKD 474
Query: 780 PHMLQK----TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
LQ+ T + +H++ + AD V VM G++ G + +
Sbjct: 475 ---LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVF 518
|
Length = 539 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT---PIC--GGQILVDGLNIINT-- 1260
AL D++ I T +G +G GKS+ L L R+ C G+I +DG +I +
Sbjct: 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 1261 -PVRDLRGRFAVVPQSPFLFEGSLRDN---------LDPFHMNDDLKIWSVLEKCHVKEE 1310
V LR R +V Q P F S+ +N L D + + L K + EE
Sbjct: 94 DVVE-LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE 152
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE-CTANVDAQTASILQNAI 1369
V + + E G S GQ+Q +C+ARA+ S +V+ +DE C+A TA + + I
Sbjct: 153 V-----KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-EELI 206
Query: 1370 SSECKGMTVITIAHRISTVLNMDEILILDH-GHLVEQGN 1407
+ T++ + H + + + H G+LVE G+
Sbjct: 207 DELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245
|
Length = 267 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 8e-12
Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 22/238 (9%)
Query: 1188 FQGLIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1244
F I NV+ Y P AL++ + T + ++G TG+GKS+++ L
Sbjct: 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 1245 ICGGQILVD------GLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNL--DPFHMND 1294
GQ +V L I V+ LR +V Q P LF+ ++ ++ P ++ +
Sbjct: 63 SETGQTIVGDYAIPANLKKIKE-VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 1295 DLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353
+ + +K V E ++ V L E +VK S S GQ++ + LA + L LDE
Sbjct: 122 NKQ--EAYKK--VPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 1354 TANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1408
T +D + N K +I + H + VL + DE++++ G ++ G+P
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
Length = 289 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 66/243 (27%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTP---- 1261
AL DI G + ++G +GAGKSS+L L L G + + G + TP
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1262 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK-----CHV----KEEVE 1312
+R+LR +V Q + NL P H+ +V + C V K++
Sbjct: 77 IRELRRNVGMVFQ---------QYNLWP-HL-------TVQQNLIEAPCRVLGLSKDQAL 119
Query: 1313 A--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQ 1360
A + L+ + + S GQ+Q + +ARAL+ +VL DE TA +D AQ
Sbjct: 120 ARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 1361 TASILQNAISSECKGMTVITIAHRI-------STVLNMDEILILDHGHLVEQG------N 1407
SI++ + G+T + + H + S V+ M+ GH+VEQG
Sbjct: 180 IVSIIRELAET---GITQVIVTHEVEVARKTASRVVYMEN------GHIVEQGDASCFTQ 230
Query: 1408 PQT 1410
PQT
Sbjct: 231 PQT 233
|
Length = 242 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 54/218 (24%), Positives = 110/218 (50%), Gaps = 26/218 (11%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG-LNIINTPVRDLR 1266
AL+D++F+++ G ++G GAGK+++++ + T G++L DG ++ P +
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 1267 ----GR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL-------EKCHVKEEVEA 1313
GR F Q P +FE ++R+NL+ +N D +++ L E+ + E +
Sbjct: 80 RAGIGRKF----QKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLAT 134
Query: 1314 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV-DAQTASI--LQNAIS 1370
+GL S GQ+Q + + L + K+L LDE A + DA+T L +++
Sbjct: 135 IGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA 194
Query: 1371 SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1407
+ +++ + H + V + D++ +L G ++ +G+
Sbjct: 195 GKH---SILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 23/207 (11%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----SIAYVPQ 679
++ VS + G + ++G G+GK++ L + G + G G A +
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78
Query: 680 VPWILSG--------TIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMA-YIGE 729
+S T R+N+ F Y + + L A L+ + M +
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLK--GDELTA-RLEELADRL---GMEELLDR 132
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
+ S G R ++A+ARA+ H + +LD+ + +D R L I L K +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR-ALREFIRQLRALGKCILF 191
Query: 790 CTHNVQAISA-ADMVVVMDKGQVKWIG 815
TH +Q + D VVV+ +G+V + G
Sbjct: 192 STHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 41/231 (17%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------- 672
LP + A+ G GSGK++L+ I G G I +G
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 673 SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I YV Q + ++R N+ +G K P + + + I ++G +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG--------R 127
Query: 731 GVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM---LQKT 786
LSGG++ R+A+ RA+ + ++D+ L+A+D IL P++ +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL------PYLERLHAEF 181
Query: 787 RILC---THNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNE 833
I +H++Q + AD VVV++ G+V G A++ S + + +
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLARED 232
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 24/240 (10%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTP--I 1245
L+ Q+V + Y A+ ++N ++ GT ++G +G GK++ L A+ R LTP
Sbjct: 4 LLSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR 61
Query: 1246 CGGQILVDGLNIINTPVRD--LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1302
G+IL+DG +I V +R R +V Q P F S+ DN+ LK+ +
Sbjct: 62 VTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVA-----GLKLAGIR 116
Query: 1303 EKCHVKEEVE----AVGLETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECT 1354
++ H+ E E L VK+ S GQ+Q +C+ARAL ++L +DE T
Sbjct: 117 DRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT 176
Query: 1355 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1413
+ +D + + +++ ++ K T+I + H + + D G LVE G L
Sbjct: 177 SALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 2e-11
Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 1204 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1263
S+ A+ D++F + G VGI G G G++ + ALF L P G+I +DG + R
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR 70
Query: 1264 DLRGR-FAVVPQSPF---LFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1318
D A VP+ L S+ +N+ L
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENI-------------AL---------------- 101
Query: 1319 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECKGMT 1377
S G +Q + LAR L + +VL LDE T VD A I + G
Sbjct: 102 -----SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 1378 VITIAHRISTVLNM-DEILILDHGHL 1402
V+ I+ + +L + D IL++ G +
Sbjct: 157 VLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 27/229 (11%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD--- 1264
A+ D + I G +G +G GKS++L +L R+ + G ++ + V
Sbjct: 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82
Query: 1265 ----LRGRFAVVPQSPFLFEGSLRDN------LDPFHMNDDLKIWSVLEKCHVKEEVEAV 1314
+R +V Q P F S+ DN L+ + + ++ L+ + +EV+
Sbjct: 83 DPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK 142
Query: 1315 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1374
+K SG+S S GQ+Q +C+ARA+ +VL LDE + +D ++ + K
Sbjct: 143 -----LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 1375 GMTVITIAHRISTVLNMDEILIL---------DHGHLVEQGNPQTLLQD 1414
T+ + H + + + + G+LVE G + Q+
Sbjct: 198 DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN 246
|
Length = 261 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 4e-11
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 56/139 (40%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 679
++L +SL + G + ++G G+GKS+LL I GE+ G + ++ I Y Q
Sbjct: 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70
Query: 680 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739
LS GG++
Sbjct: 71 ----LS--------------------------------------------------GGEK 76
Query: 740 ARLALARAVYHGSDIYMLD 758
RLALA+ + ++ +LD
Sbjct: 77 MRLALAKLLLENPNLLLLD 95
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-11
Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 22/234 (9%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
L+ ++++ +Y S L I+FT+ G ++G GAGKS+++ + + P G +
Sbjct: 11 LLCARSISKQY--SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1251 LVDGLNIIN-TPVRDLRGRFAVVPQSPFLFEG-SLRDNLD---PFHMNDDLKIWSVLEK- 1304
+ G TP + + +VPQ P LF S+++N+ P K+ +L
Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128
Query: 1305 -CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTA 1362
C + + A LE V RQ++ + R L++ S++L LDE TA++ A+T
Sbjct: 129 GCQLDLDSSAGSLE-----------VADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 1363 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
+ +G+ ++ I+H++ + + D I ++ G + G L D+
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231
|
Length = 510 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 38/218 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHA 670
+ L ++L +PK + A+IG G GKS+LL S I G+++ I+
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 671 SG--------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMV 720
+ V Q P +I DNI +G P+ + K LD V+ SL
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG----PRLHGIKDKK-ELDEIVEESLKK 127
Query: 721 GGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 776
+ ++ + LSGGQ+ RL +ARA+ ++ +LD+ SA+D I
Sbjct: 128 AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE--E 185
Query: 777 IMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 811
++ L+K T ++ THN+ QA +D G++
Sbjct: 186 LI--QELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 6e-11
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 1196 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1255
++++ Y+ +AL D++ TI G V ++G +G GK+++LN + G I ++G
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG- 66
Query: 1256 NIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSV---LEKCHVKEEV 1311
+ VV Q+ L ++ DN+ F L++ + + + +
Sbjct: 67 ----RRIEGPGAERGVVFQNEALLPWLNVIDNVA-F----GLQLRGIEKAQRREIAHQML 117
Query: 1312 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1371
VGLE + S G RQ + +ARAL ++L LDE +DA T +Q +
Sbjct: 118 ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177
Query: 1372 ECK--GMTVITIAHRISTVLNM-DEILILDHG 1400
+ G V+ I H I L + +++L G
Sbjct: 178 LWQETGKQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG--GQILVDGLNII--NT 1260
AL+ ++ ++G +G+GKS++L ++ R L P G I+ +G NI T
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVGL 1316
DLR +V Q P F S+ +N+ L++ + +K + E VE +
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENV-----VYGLRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 1317 ETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1372
VK +S + S GQ+Q +C+AR L S K++ LDE T+ +D +A ++ +
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
Query: 1373 CKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414
T++ + RIS D G L+E + + + +
Sbjct: 195 KDDYTMLLVTRSMQQASRIS-----DRTGFFLDGDLIEYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-11
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS---ILNALFRLTPICGG 1248
+E +NVT Y ++ IN TI+ G + ++G G+GKS+ +L L++ P G
Sbjct: 323 LELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQ-SG 378
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1308
+IL+DG + D R F+ V LF+ L P + + LE+ +
Sbjct: 379 EILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKP---ANPALVEKWLERLKMA 435
Query: 1309 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
++E S + S GQ++ + L AL + +L LDE A+ D
Sbjct: 436 HKLELEDGRI----SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV 491
Query: 1369 ISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVE 1404
+ + G T+ I+H ++ D +L + +G L E
Sbjct: 492 LLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 35/219 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+N ++L + KG + +IG GSGK++ + I + T G I G
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75
Query: 673 SIAYVPQ----VPWILSGTIRDNI-----LFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I YV Q P + T+ +NI L + + D ++L+
Sbjct: 76 KIGYVIQQIGLFPHM---TVEENIALVPKLLK-------WPKEKIRERADELLALVGLDP 125
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 782
+ LSGGQ+ R+ +ARA+ + ++D+ A+D + R L
Sbjct: 126 AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-ITRDQLQEEFKRLQQE 184
Query: 783 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L KT + TH++ A AD + +M G++ +G+ ++
Sbjct: 185 LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 8e-11
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 31/221 (14%)
Query: 1204 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1263
S + D++FT+ G +GI G GAG++ + ALF P G+IL+DG + R
Sbjct: 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPR 329
Query: 1264 D-LRGRFAVVP---QSPFLFEG-SLRDNLDPFHMN----DDLKIWSVL----EKCHVKEE 1310
D ++ A VP +S L S+ +N + ++ E+ +
Sbjct: 330 DAIKAGIAYVPEDRKSEGLVLDMSIAEN-----ITLASLRRFSRRGLIDRRKERALAERY 384
Query: 1311 VEAVGLETFVKESGI-----SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASI 1364
+ + +K + S G +Q + LAR L KVL LDE T +D A I
Sbjct: 385 IRRLR----IKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEI 440
Query: 1365 LQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1403
+ I G ++ I+ + +L + D IL++ G +V
Sbjct: 441 YR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 8e-11
Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 13/210 (6%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-----QILVDGLNII--NTP 1261
L +IN I+G +G GKS++L AL R+ I G +L+D NI N
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79
Query: 1262 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1321
V +LR R +V Q P F S+ DN+ S L++ V++ + L VK
Sbjct: 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEV-VEKSLRQAALWDEVK 138
Query: 1322 E----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1377
+ SG++ S GQ+Q +C+AR L +V+ +DE + +D + ++ + + T
Sbjct: 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYT 198
Query: 1378 VITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+ + H + D L G LVE G
Sbjct: 199 IAIVTHNMQQAARASDWTGFLLTGDLVEYG 228
|
Length = 251 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 9e-11
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 41/221 (18%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
AL DI+F I G +VGI+G GAGKS++L + + G++ V G +
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG---------KV-- 90
Query: 1268 RFAVVPQSPFL-----FEGSL--RDNLDPFHMNDDLKIWSVLEKCHVKEEVEA-VGLETF 1319
+P + F+ L R+N+ ++ + + E +E+ L F
Sbjct: 91 -------APLIELGAGFDPELTGRENI---YLRGLILGLTRKEIDEKVDEIIEFAELGDF 140
Query: 1320 VKESGISFSVGQRQLICLARALLKSSK--VLCLDECTANVDAQ----TASILQNAISSEC 1373
+ + ++S G LA ++ + +L LDE A DA L +
Sbjct: 141 IDQPVKTYSSGMY--ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE--- 195
Query: 1374 KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1413
K T++ ++H + + D + L+HG + +G+P+ ++
Sbjct: 196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 35/214 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
L VSL + +G ++G GSGKS LL +I G + G I +G
Sbjct: 12 EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR 71
Query: 674 -IAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I+YVPQ P + T+ NI +G + D + + +I+ M+G D
Sbjct: 72 DISYVPQNYALFPHM---TVYKNIAYGLKKRKVDKKEIERKVL------EIAEMLGID-H 121
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ---VARWILSNAIMGPHM 782
+ K LSGG++ R+A+ARA+ I +LD+ SA+D + R L
Sbjct: 122 LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR---KE 178
Query: 783 LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIG 815
T + TH+ +A + AD V +M G++ +G
Sbjct: 179 FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 53/228 (23%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
N V++ ++L + +G++V ++G G GK+++L + G T G I G
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 673 -------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVGGDM 724
S A P + ++ +N+ +G E + V +L +V D+
Sbjct: 79 DICMVFQSYALFPHM------SLGENVGYGLKMLGVPKEERKQR----VKEALELV--DL 126
Query: 725 AYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
A ++ V+ +SGGQ+ R+ALARA+ + + D+ LS +DA + R M
Sbjct: 127 AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR----------SMR 176
Query: 784 QKTRIL----------CTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
+K R L TH+ +A + +D V+VM+KG++ IGS +L
Sbjct: 177 EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I+F+N+ + P+ + ++F + G + I G G GKSS+ L L P+ GG++
Sbjct: 452 IKFENIPL-VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLT 510
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
+G+ VPQ P++ G+LRD + ++D+K + +K +++ +
Sbjct: 511 KPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDK-DLEQIL 558
Query: 1312 EAVGLETFVK-ESGIS--------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
+ V L ++ E G S S G++Q I +AR + LDECT+ V
Sbjct: 559 DNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD-- 616
Query: 1363 SILQNAISSECK--GMTVITIAHRIS 1386
++ + C+ G+T+ +++HR S
Sbjct: 617 --VEGYMYRLCREFGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-10
Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRD 1264
AL I+ + G VG+ G GAGKS+++ L + P G G+I G + + +RD
Sbjct: 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNIRD 74
Query: 1265 L-RGRFAVVPQSPFLF-EGSLRDN--------LDPFHMNDDLKIWSVLEKCH--VKE-EV 1311
R ++ Q L E S+ +N L M + + ++E ++
Sbjct: 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY----LRAKNLLRELQL 130
Query: 1312 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1371
+A + V + G GQ+QL+ +A+AL K +++L LDE ++++ + IL + I
Sbjct: 131 DADNVTRPVGDYGG----GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
Query: 1372 -ECKGMTVITIAHRISTV 1388
+ G+ + I+H+++ V
Sbjct: 187 LKAHGVACVYISHKLNEV 204
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
V+ + +S L G + + G GSGK++LL I G + G+I G P V
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 685 -----------SGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ T+ +N+ F + + + L+A L +A++
Sbjct: 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL---------APLAHL--P 124
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
LS GQ+ R+ALAR + I++LD+ +A+DA
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
|
Length = 207 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 23/218 (10%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
+ ++ T G+ G++G G+GKS++L L G + + G+++ R R
Sbjct: 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76
Query: 1269 FAVVPQ-SPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCH----VKEEVEAVGLETF 1319
A+V Q S ++RD + P +W+ + H V + L
Sbjct: 77 VALVEQDSDTAVPLTVRDVVALGRIPH-----RSLWA-GDSPHDAAVVDRALARTELSHL 130
Query: 1320 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQTASILQNAISSE--CKG 1375
+ S G+RQ + +ARAL + K+L LDE T ++D AQ ++ A+ E G
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL---ALVRELAATG 187
Query: 1376 MTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
+TV+ H ++ + D +++LD G +V G P+ +L
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 57/239 (23%), Positives = 109/239 (45%), Gaps = 18/239 (7%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG- 1247
Q I+ +N+ + Y AL +++ I + ++G +G GKS+ + L R+ +
Sbjct: 10 QPQIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN 67
Query: 1248 ----GQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKI 1298
G++ ++G +I V +LR +V Q P F S+ DN+ H + +
Sbjct: 68 CRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 1299 WSVLEKCHVKEEVEAVGLETF--VKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
V+E A+ ET +K +S S GQ+Q +C+AR L K++ DE T+
Sbjct: 128 DGVVENAL---RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSA 184
Query: 1357 VDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+D + + +++ I + K T++ + H + + D G L+E G + + +
Sbjct: 185 LDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243
|
Length = 258 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 53/211 (25%), Positives = 106/211 (50%), Gaps = 22/211 (10%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1247
L+E +N+T + + A L +++ + G V + G GAGKS+++ L + P G
Sbjct: 5 LLEMKNITKTF-GGVKA-LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYE 61
Query: 1248 GQILVDGLNIINTPVRD--------LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1299
G+I+ +G + + +RD + A+V + L L + + P + D ++
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121
Query: 1300 SVLEKCHVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
+K + +++ + T V G+ GQ+QL+ +A+AL K +++L LDE TA++
Sbjct: 122 LRAQK--LLAQLKLDINPATPVGNLGL----GQQQLVEIAKALNKQARLLILDEPTASLT 175
Query: 1359 AQTASILQNAISS-ECKGMTVITIAHRISTV 1388
++L + I + G+ I I+H+++ V
Sbjct: 176 ESETAVLLDIIRDLKAHGIACIYISHKLNEV 206
|
Length = 506 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673
L VS + +G VA++G GSGKS+L + G ++ G+I G
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
Query: 674 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ V Q P + T++D++ FG E ++ VD +L G ++ +
Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER----VDQALRQVGMEDFLNREP 138
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC- 790
LSGGQ+ R+A+A + DI +LD+ S +D + R +L + ++ I
Sbjct: 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV---RQLKEQKGITVL 195
Query: 791 --THNVQAISAADMVVVMDKGQVKWIG 815
TH++ + AD V+VM+KG++ G
Sbjct: 196 SITHDLDEAAQADRVIVMNKGEILEEG 222
|
Length = 279 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 673
L ++L + KG + +IG+ GSGKS+L + G + G + SG
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 674 -IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ V Q P + T+ +++ FG P++ VD +L G Y
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFG----PENLCLPPIEIRKRVDRALAEIGLEKYRHRS 133
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQ +ALA + + + D+V S +D +L I H KT +
Sbjct: 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYI 192
Query: 791 THNVQAISAADMVVVMDKGQVKWIGS 816
THN++ + AD ++VMD+G++ G
Sbjct: 193 THNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 52/225 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-------GSIHASGSIA 675
+ + V++ + K + A+IG G GK++LL SI M H G I+ G
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI--NRMNDHIPGFRVEGKIYFKGQDI 72
Query: 676 YVP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL 712
Y P Q P +I DN+ FG K+ + E+LK L
Sbjct: 73 YDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAAL 132
Query: 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI 772
++ + + + G LSGGQ+ RL +ARA+ ++ +LD+ SA+D + I
Sbjct: 133 WDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI 185
Query: 773 LSNAIMGPHMLQK-----TRILCTHNV-QAISAADMVVVMDKGQV 811
+L++ T ++ THN+ QAI AD + M +G++
Sbjct: 186 EK-------LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
|
Length = 250 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 43/224 (19%)
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
V+ RY L+ ++ I G V +VGR+G GKS++L L L G++L
Sbjct: 16 NAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG- 72
Query: 1255 LNIINTPVRDLRGRFAVVPQSPFLF-------------EGSLRDNLDPFHMNDDLKIWSV 1301
P+ + R ++ Q L +G RD
Sbjct: 73 ----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA--------------- 113
Query: 1302 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1361
+ + AVGL E + S GQ+Q + LARAL+ +L LDE +DA T
Sbjct: 114 -----ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 1362 ASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1402
+Q+ I S + G TV+ + H +S + M D +L+++ G +
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------IAYVPQ---V 680
L KG L+ ++G G+GK++LL +ILG + G++ +G+ I YVPQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQR 739
W ++ ++ G+ A V +L G + + ++ V LSGGQR
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVG-LTELADRPVGELSGGQR 119
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LSNAIMGPHMLQKTRILCTHN-VQA 796
R+ +ARA+ + +LD+ + +D + L + G ++ TH+ QA
Sbjct: 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT---AILMTTHDLAQA 176
Query: 797 ISAADMVVVMDKGQVKWIGSSADL 820
++ D VV+++ G+V G+ L
Sbjct: 177 MATCDRVVLLN-GRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 35/214 (16%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR- 1266
AL+D++ ++ G I+G GAGK+++++ + T G +L G ++ P +
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76
Query: 1267 ---GR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL-------EKCHVKEEVEAV 1314
GR F Q P +FE ++ +NL+ + D +++ L EK ++E +E +
Sbjct: 77 AGIGRKF----QKPTVFENLTVFENLE-LALPRDKSVFASLFFRLSAEEKDRIEEVLETI 131
Query: 1315 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV-DA---QTASILQNAIS 1370
GL S GQ+Q + + L++ K+L LDE A + D +TA +L++ ++
Sbjct: 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS-LA 190
Query: 1371 SECKGMTVITIAH------RIS---TVLNMDEIL 1395
+ +V+ + H I+ TVL+ +L
Sbjct: 191 GKH---SVVVVEHDMEFVRSIADKVTVLHQGSVL 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 58/221 (26%), Positives = 112/221 (50%), Gaps = 28/221 (12%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-DG---LNIINTPV- 1262
+H+ + IE G ++G +G+GKS++L A+ L P+ G +LV DG +++ N
Sbjct: 39 GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAA 98
Query: 1263 --RDLR-GRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLE---KCHVKEEVE 1312
R LR R ++V Q P+ ++ +N+ F L++ + + + V E++E
Sbjct: 99 TLRRLRTHRVSMVFQQFALLPWR---TVEENV-AF----GLEMQGMPKAERRKRVDEQLE 150
Query: 1313 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AI 1369
VGL + S G +Q + LARA + +L +DE + +D + LQ+ +
Sbjct: 151 LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210
Query: 1370 SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1409
S+ K T++ ++H + L + + I I++ G +++ G P+
Sbjct: 211 QSKLK-KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPE 250
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 33/160 (20%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------ 679
L ++L L G L+ V+G G GK++LLN I G + HGSI G P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 680 ------VPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+PW ++DN+ FG K + + LK L+ G + Y
Sbjct: 76 FQNEGLLPWR---NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-------GAEKRY 125
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
I + LSGGQR R+ +ARA+ + +LD+ A+DA
Sbjct: 126 IWQ----LSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 43/226 (19%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY + L +++ +PK + A+IG G GKS+LL I G+++
Sbjct: 15 WY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL 69
Query: 663 LTHGSIHASGS--------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
+I SG+ I V Q P +I +N+ +G P+ + E K TLD
Sbjct: 70 YNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYG----PRIHGEKNKK-TLDT 124
Query: 715 DISLMVGGDMAY------IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
+ + G + + + ++LSGGQ+ RL +AR + ++ ++D+ SA+D +
Sbjct: 125 IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-I 183
Query: 769 ARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 811
A + + I L+K T I+ THN+ QA +D M G++
Sbjct: 184 ATAKIEDLIE---DLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226
|
Length = 253 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 27/245 (11%)
Query: 1188 FQGLIEFQNV--TMRYKPSL-----PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1240
+ L+E +N+ T RY+ A+ ++FT+ G + I+G G+GKS++ L
Sbjct: 1 VETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 1241 RLTPICGGQILVDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN------LD-PFH 1291
+ G++L+D L+ + R R R ++ Q P SL LD P
Sbjct: 61 GMIEPTSGELLIDDHPLHFGDYSYRSQRIR--MIFQDP---STSLNPRQRISQILDFPLR 115
Query: 1292 MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCL 1350
+N DL+ EK + E + VGL + GQ+Q + LARAL+ KV+
Sbjct: 116 LNTDLEP-EQREK-QIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIA 173
Query: 1351 DECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1407
DE A++D S L N + E +G++ I + + + ++ D++L++ G +VE+G+
Sbjct: 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233
Query: 1408 PQTLL 1412
+L
Sbjct: 234 TADVL 238
|
Length = 267 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 48/248 (19%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICG 1247
IE +N+ ++ L +H ++ T++ G + +VG +G+GKS A + P
Sbjct: 5 IELRNIALQAAQPL---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA 61
Query: 1248 GQILVDGLNIINTPV--RDLRGR-FAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLE 1303
G++L+DG PV LRGR A + Q+P R +P H M+ E
Sbjct: 62 GRVLLDG-----KPVAPCALRGRKIATIMQNP-------RSAFNPLHTMHT-----HARE 104
Query: 1304 KCHVK----------EEVEAVGLE---TFVKESGISFSVGQRQLICLARALLKSSKVLCL 1350
C +EAVGLE +K S G Q + +A ALL + +
Sbjct: 105 TCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIA 164
Query: 1351 DECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1405
DE T ++D A+ +L++ + GM ++T H + V + D++ ++ HG +VEQ
Sbjct: 165 DEPTTDLDVVAQARILDLLESIVQKRALGMLLVT--HDMGVVARLADDVAVMSHGRIVEQ 222
Query: 1406 GNPQTLLQ 1413
G+ +TL
Sbjct: 223 GDVETLFN 230
|
Length = 254 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-10
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQVPW 682
+L++++ + G + + GE G+GK+SLL ++ G G I A ++ ++PQ P+
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY 466
Query: 683 ILSGTIRDNILF---GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-----L 734
+ GT+R+ + + ++ L L + + L
Sbjct: 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL----------DEEDRWDRVL 516
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
SGG++ RLA AR + H LD+ SA+D +
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549
|
Length = 604 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 41/223 (18%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH------ASGS------- 673
L V++ +P GS VA+IG GSGKS+LL + G + T G++ +G
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 674 ----IAYVPQVP--WILSGTIRDNILFGKNYDPQSY--SETLKACTLDVDISLMVGGDMA 725
+ V Q P + T+ +I FG P ++ SE A ++ +VG
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFG----PMNFGVSEE-DAKQKAREMIELVGLPEE 137
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--- 782
+ LSGGQ R+A+A + ++ +LD+ + +D + R +M M
Sbjct: 138 LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GR----KEMME--MFYK 190
Query: 783 LQK----TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L K T +L TH+++ A AD +VVM KG V G+ ++
Sbjct: 191 LHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 59/249 (23%)
Query: 1192 IEFQNVTMRYK-PSLPA-------------------ALHDINFTIEGGTQVGIVGRTGAG 1231
IE +NV+ Y + AL D++F + G ++G++GR GAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 1232 KSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL-----FEGSL--R 1284
KS++L L + P G + V G + S L F L R
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRG-RV-----------------SSLLGLGGGFNPELTGR 102
Query: 1285 DNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF----VKESGISFSVGQRQLICLAR 1339
+N+ ++N L S E +E+ L F VK +S G + + A
Sbjct: 103 ENI---YLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKT----YSSGMKARLAFAI 155
Query: 1340 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLNM-DEILIL 1397
A +L +DE A DA Q + K G TVI ++H S++ + D L+L
Sbjct: 156 ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215
Query: 1398 DHGHLVEQG 1406
+ G + G
Sbjct: 216 EKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 4e-10
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 22/221 (9%)
Query: 1197 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----IC-GGQI 1250
+ + ++ L D NFT+ + G +G+GK+S++N + LT I G++
Sbjct: 2 LELNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV 61
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
LVD I P + R V Q LF ++R NL +W + +
Sbjct: 62 LVDAEKGIFLPPE--KRRIGYVFQDARLFPHYTVRGNL-------RYGMWKS-MRAQFDQ 111
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQ-- 1366
V +G+E + + S G++Q + + RALL + ++L +DE A++D IL
Sbjct: 112 LVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171
Query: 1367 NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+ E + ++ ++H + VL + D +++L++G + G
Sbjct: 172 ERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-10
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 38/229 (16%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRD 1264
A+ ++F + G + +VG +G+GKS+ AL RL GG+I+ +G I ++
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398
Query: 1265 LRGRFAVVPQSPFLFEGSLRDNLDP-----FHMNDDLKIWSVLE----KCHVKEEVEAVG 1315
LR + Q P+ +LDP + + L++ +L V +E VG
Sbjct: 399 LRRDIQFIFQDPYA-------SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVG 451
Query: 1316 LET-----FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
L + E FS GQRQ IC+ARAL + KV+ DE + +D + N +
Sbjct: 452 LLPEHAWRYPHE----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLL 507
Query: 1371 SECK--GMTVITIAHRISTVLNMD-EILILDHGHLVEQG-------NPQ 1409
+ G+ + I+H ++ V + + ++ G +VE G NPQ
Sbjct: 508 DLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQ 556
|
Length = 623 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 53/245 (21%)
Query: 1194 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQIL 1251
+ ++ MR+ + T+E G +V I+G +GAGKS++LN A F LTP G +
Sbjct: 11 YHHLPMRF-----------DLTVERGERVAILGPSGAGKSTLLNLIAGF-LTP-ASGSLT 57
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH----------MNDDLKIWSV 1301
++G + TP + P S LF+ +NL H +N LK+ +
Sbjct: 58 LNGQDHTTTPP-------SRRPVS-MLFQ---ENNLFS-HLTVAQNIGLGLNPGLKL-NA 104
Query: 1302 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQ 1360
++ + +G+E + S GQRQ + LAR L++ +L LDE + +D A
Sbjct: 105 AQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164
Query: 1361 TASILQNAISSEC--KGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLL 1412
+L +S C + +T++ ++H RI+ +++ D G + G LL
Sbjct: 165 RQEMLT-LVSQVCQERQLTLLMVSHSLEDAARIAP----RSLVVAD-GRIAWDGPTDELL 218
Query: 1413 QDECS 1417
+ S
Sbjct: 219 SGKAS 223
|
Length = 232 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 29/203 (14%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L++I+F++ G I G +G GKS++L + L G +L +G +I R +
Sbjct: 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82
Query: 1269 FAVVPQSPFLFEGSLRDNL-----------DPFHMNDDLKIWSVLEKCHVKEEVEAVGL- 1316
+ Q+P LF ++ DNL DP DDL E L
Sbjct: 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDL---------------ERFALP 127
Query: 1317 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECK 1374
+T + ++ S G++Q I L R L KVL LDE T+ +D + I +
Sbjct: 128 DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ 187
Query: 1375 GMTVITIAHRISTVLNMDEILIL 1397
+ V+ + H + + D+++ L
Sbjct: 188 NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 45/230 (19%)
Query: 1191 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
L++ N+ RY+ LH+++F+I G + IVG +G+GKS++L+ L L G
Sbjct: 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
Query: 1249 QILVDG--LNIINTPVR-DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-- 1303
++ +G ++ +++ + +LR + + F+++ FH L ++ LE
Sbjct: 65 DVIFNGQPMSKLSSAAKAELRNQ-----KLGFIYQ---------FH--HLLPDFTALENV 108
Query: 1304 --------------KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1349
E + AVGLE S G+RQ + +ARAL+ + +++
Sbjct: 109 AMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL 168
Query: 1350 LDECTANVDAQTA----SILQNAISSECKGMTVIT----IAHRISTVLNM 1391
DE T N+DA+ A +L + V+T +A R+S L M
Sbjct: 169 ADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM 218
|
Length = 233 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 5e-10
Identities = 97/418 (23%), Positives = 161/418 (38%), Gaps = 86/418 (20%)
Query: 446 TEKMMKQKDERIRRTGEILTHI-------RTLKMYGWEQIFSSWLMKTRSSEVK----HL 494
T + +KQ + R I +H+ T++ +G + F + K + +L
Sbjct: 1048 TSQQLKQLESEAR--SPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYL 1105
Query: 495 STRKYLDAWC----VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLN 550
ST ++ VFF F TF A+ +Q V L L +++S
Sbjct: 1106 STLRWFQMRIDIIFVFF-------FIAVTF--IAIGTNQDGEGEVGIILTLAMNILS--- 1153
Query: 551 SFPWVINGLIDA---FISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVI 607
+ W +N ID S+ R+ +F+ +L Q PS G S + +
Sbjct: 1154 TLQWAVNSSIDVDGLMRSVSRVFKFI-------DLPQEEPRPS--GGGGKYQLSTVLVIE 1204
Query: 608 MQDATCSWYCNNE-----------EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 656
A W + E VL +S + G V ++G GSGKS+LL++
Sbjct: 1205 NPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264
Query: 657 ILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDP--Q 701
+L ++ T G I G + +PQ +I SGT R KN DP Q
Sbjct: 1265 LL-RLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR------KNLDPYEQ 1317
Query: 702 SYSETLKACTLDVDISLMVG---GDMAYIGEK-GVNLSGGQRARLALARAVYHGSDIYML 757
E + +V + ++ + ++ G LS G + + LAR++ + I +L
Sbjct: 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377
Query: 758 DD---VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
D+ L V Q+ R L + T IL H V+A+ +V++ VK
Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQSFS-----NCTVILSEHRVEALLECQQFLVIEGSSVK 1430
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 43/208 (20%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------------IAYVP 678
+ + G G+GKS+LL I G G+I +G+ I V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 679 Q----VPWILSGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
Q P + +R+N+ FG D S E L + + ++ Y +
Sbjct: 82 QQYALFPHL---NVRENLAFGLKRKRNREDRISVDELLDL----LGLDHLLN---RYPAQ 131
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRI 788
LSGG++ R+ALARA+ ++ +LD+ SA+D + R L + L I
Sbjct: 132 ----LSGGEKQRVALARALAAQPELLLLDEPFSALDRAL-RLQLLPELKQIKKNLNIPVI 186
Query: 789 LCTHN-VQAISAADMVVVMDKGQVKWIG 815
TH+ +A AD +VVM+ G++++IG
Sbjct: 187 FVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 45/224 (20%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 671
V+N VSL + +G +V ++G G+GK++ I+G + G I A
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74
Query: 672 GSIAYVPQVPWILSG-TIRDNIL-----FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I Y+PQ I T+ +NIL G + + E L+ + I+
Sbjct: 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE--EKLEELLEEFHIT-------H 125
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI------LSNAIMG 779
K +LSGG+R R+ +ARA+ +LD+ + VD + I L + +G
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 780 PHMLQKTRILCT-HNV-QAISAADMVVVMDKGQVKWIGSSADLA 821
+L T HNV + +S D ++ +G+V G+ ++A
Sbjct: 186 --------VLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 5e-10
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 31/219 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+N L + KG + ++G GSGKS+ + + + T G I G
Sbjct: 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELR 66
Query: 673 -----SIAYVPQ-VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q TI N G + Q E V + +
Sbjct: 67 EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG---LEEYE 123
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 782
Y E LSGG + R+ LARA+ DI ++D+ SA+D + R + + +
Sbjct: 124 HRYPDE----LSGGMQQRVGLARALAAEPDILLMDEAFSALDP-LIRDSMQDELKKLQAT 178
Query: 783 LQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
LQKT + TH++ +AI D +V+M G++ +G+ ++
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 52/229 (22%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+L+ VSL L G ++A++G G+GKS+LL ++ GE+ G + +G
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 673 SIAYVPQ-VPWILSGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
A +PQ T+++ + G +P+ D+S
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-------GL 128
Query: 727 IGEKGVNLSGGQRARLALAR------AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
G LSGG++ R+ LAR LD+ SA+D +++
Sbjct: 129 AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD-------IAHQH--- 178
Query: 781 HMLQKTRILCT---------HNVQAISA-ADMVVVMDKGQVKWIGSSAD 819
H L+ R L H++ + AD +V++ +G+V GS D
Sbjct: 179 HTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 34/219 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+++ V + P GSL ++G GSGKS+LL + G + G++ +G
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 674 -IAYVPQ-VPWILSGTIRDNILFGK-------NYDPQSYSETLKACTLDVDISLMVGGDM 724
+A V Q + T+RD + G+ D + + ++S + DM
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAIMGPHM 782
+ LSGG+R R+ +ARA+ + +LD+ + +D AQ+ L +
Sbjct: 136 S-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-- 186
Query: 783 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T + H++ A S D VVV+D G+V G ++
Sbjct: 187 -GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 32/183 (17%)
Query: 1212 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271
++FT+ G + + G G GK+++L L L G++ +G T + + R
Sbjct: 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG-----TALAEQRDE--- 70
Query: 1272 VPQSPFLFEG---------SLRDNLD---PFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1319
P L+ G S +NL H I L AVGL F
Sbjct: 71 -PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDAL---------AAVGLTGF 120
Query: 1320 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMT 1377
S GQ++ + LAR L + + LDE T +D ++L + + G+
Sbjct: 121 EDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180
Query: 1378 VIT 1380
++T
Sbjct: 181 LLT 183
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 7e-10
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L +N TI+ G + ++G +G GKS++LN + L G ++++G I P D R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ-ITEPGPD---R 56
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE-VEAVGLETFVKESGISF 1327
V L ++R+N+ ++ L S E+ + EE + VGL +
Sbjct: 57 MVVFQNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115
Query: 1328 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRI 1385
S G +Q + +ARAL KVL LDE +DA T LQ + + +TV+ + H +
Sbjct: 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175
Query: 1386 STVLNM-DEILILDHG 1400
L + D +++L +G
Sbjct: 176 DEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNII--NT 1260
A+ +N I I+G +G GKS+ L A+ R L P C G ++ DG +I T
Sbjct: 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFH-MNDDLKIWSVLEKCHVK----EEVE 1312
LR + +V Q P F S+ DN+ H +ND ++ ++EK K +EV
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS 173
Query: 1313 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1372
+ ++ + S GQ+Q +C+AR L ++L LDE T+ +D + + +++ I E
Sbjct: 174 -----DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLI-QE 227
Query: 1373 CKGMTVITI-------AHRISTVLNMDEILILDHGHLVE 1404
+G I I A R+S D + G LVE
Sbjct: 228 LRGSYTIMIVTHNMQQASRVS-----DYTMFFYEGVLVE 261
|
Length = 286 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
L ++L + G VA+IG G+GKS+LL I + + GSI G
Sbjct: 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKK 73
Query: 673 ------SIAYVPQ-VPWILSGTIRDNILFGK-NYDP------QSYSETLKACTLD----V 714
I + Q I T+ +N+L G+ Y P +SE K L V
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
++ D AY + LSGGQ+ R+A+ARA+ D+ + D+ ++++D + ++ ++
Sbjct: 134 GLA-----DKAYQ--RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD 186
Query: 775 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T I+ H V A AD +V + G++ + G+ ++L
Sbjct: 187 YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 8e-10
Identities = 56/229 (24%), Positives = 108/229 (47%), Gaps = 23/229 (10%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV---------DGLNII 1258
AL++I++T E I+G +G+GKS+++ L G I V + +I
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 1259 NTPV-------RDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
P ++LR R ++V Q P LF+ ++ ++ + L + K K
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA--LGVKKSEAKKLAKF 158
Query: 1310 EVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
+ +GL +++++ S S GQ++ + +A L ++L DE TA +D + +
Sbjct: 159 YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218
Query: 1369 I-SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
I ++ TV I H + VL + DE++++D G +++ G P + D+
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 8e-10
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 601 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 660
S D+ + +++ C + +E + V LN +S K + +IG GSGKS+L+ G
Sbjct: 17 SDDIILRVKNLYCV-FDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 661 MMLTHGSIHASG-----------------------------SIAYVPQVP--WILSGTIR 689
+ +G+I ++ V Q P + TI
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 690 DNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749
+I+FG SE K ++ +G D +Y+ LSGGQ+ R+A+A +
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAKFYLN---KMGLDDSYLERSPFGLSGGQKRRVAIAGILA 192
Query: 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDK 808
+I + D+ + +D + ++ I+ KT + TH + + AD V+VMDK
Sbjct: 193 IQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251
Query: 809 GQV 811
G++
Sbjct: 252 GKI 254
|
Length = 320 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 9e-10
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672
Y N + L + L + KGS A+IG GSGKS+LL + G + T G +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 673 --------------SIAYVPQVP--WILSGTIRDNILFGKNYDPQSY------SETLKAC 710
+ V Q P + T+ ++ FG PQ++ +E + A
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG----PQNFGIPKEKAEKIAAE 126
Query: 711 TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
L+ MVG + + LSGGQ R+A+A + ++ +LD+ + +D + AR
Sbjct: 127 KLE-----MVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK-AR 180
Query: 771 WILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
+ H +T +L TH + ++ AD V +++KG + G+ +D+
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 9e-10
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 30/214 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
+N VSL + G +V +IG G+GK++L N I G + G++ G
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 674 ---IAYVPQVPWILSG-TIRDNILFGK-NYDPQSYSETLKACTLDVDISL--------MV 720
IA Q+ + G T+ +N+ G S + + V
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 721 G-GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
G G++A NLS GQ+ RL +ARA+ + +LD+ + ++ + + I
Sbjct: 138 GLGELAD--RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRE 194
Query: 780 -PHMLQKTRILCTHNVQAI-SAADMVVVMDKGQV 811
T +L H+++ + AD +VV++ G+V
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228
|
Length = 250 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL--- 1265
L DIN I G V + G +G+GK+++L + L + G + V G + ++L
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 1266 RGRFAVVPQSPFLFEGSL--RDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE 1322
R + Q+ L G L R N+ + +L E+ +EAVGL +
Sbjct: 81 RRNIGYIFQAHNLL-GFLTARQNVQMALELQPNLSYQEARERAR--AMLEAVGLGDHLDY 137
Query: 1323 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1380
+ S GQ+Q + +ARAL+ K++ DE TA +D+++ + + + G T++
Sbjct: 138 YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI 197
Query: 1381 IAH--RISTVLNMDEILILDHGHLV 1403
+ H RI V D I+ ++ G L+
Sbjct: 198 VTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
L+ V++ + G V +IG GSGKS+L+ + G + T G I G
Sbjct: 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
+ V Q P + TI +I FG S E ++ +VG D
Sbjct: 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN---IVGLDYEDY 137
Query: 728 GEKG-VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK- 785
+K LSGGQ+ R+A+A V I +LD+ + +D + IL N I H
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNM 196
Query: 786 TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819
T IL +H+++ ++ AD ++VM+KG+ + G+ +
Sbjct: 197 TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ VSL L G + ++G G+GK++L+ + + G+I G
Sbjct: 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRR 72
Query: 674 -IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT---LDVDISLMVGG-DMAYIG 728
I Y+PQ + N + Y LK + + ++ ++
Sbjct: 73 RIGYLPQEF-----GVYPNF---TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA 124
Query: 729 EKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD-AQ--VARWILSNAIMGPHMLQ 784
+K + LSGG R R+ +A+A+ I ++D+ + +D + R +LS L
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE-------LG 177
Query: 785 KTR--ILCTHNVQAISA-ADMVVVMDKGQVKWIG 815
+ R IL TH V+ + + + V V++KG++ + G
Sbjct: 178 EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-LTHGSIHASG--------- 672
VVL+ VSL +PKG + ++IG G+GKS+LL S++ ++ G I G
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSK 71
Query: 673 ----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVD--ISLMVGGDMA 725
++ + Q I S T+RD + FG+ P S K ++ I + D++
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFGRF--PYSQGRLTKEDRRIINEAIEYLHLEDLS 129
Query: 726 --YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
Y+ E LSGGQR R +A + +D +LD+ L+ +D + + I+ L
Sbjct: 130 DRYLDE----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 784 QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
KT ++ H++ S +D +V + G+V GS ++
Sbjct: 186 GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
|
Length = 252 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 68/239 (28%), Positives = 107/239 (44%), Gaps = 32/239 (13%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
Q I +VT+ ++ AL D +FT+ GG+ +VG G+GKS++ AL + G
Sbjct: 4 QAGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG 62
Query: 1249 QILVDGLNIINTPVRD-LRGRF-AVVPQS-------PFLFEGSLRDNLDPF-HMNDDLKI 1298
+I +I+ P R L+ A VPQS P L E + + + HM
Sbjct: 63 KI-----SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM--MGRYGHMG----- 110
Query: 1299 WSVLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354
W K ++ V A V + F S GQ++ + LARA+ + +V+ LDE
Sbjct: 111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 1355 ANVDAQT-ASI--LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQT 1410
VD +T A I L + E K M V T H + +V + ++ G ++ G +T
Sbjct: 171 TGVDVKTEARIISLLRELRDEGKTMLVST--HNLGSVTEFCDYTVMVKGTVLASGPTET 227
|
Length = 272 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--Q 679
Q+ V + VSL + KG + A++G G GKS+LL + G T G I G +++VP Q
Sbjct: 32 QHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90
Query: 680 VPWIL---------SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
P + T+ NI FG D +E V+ L + + K
Sbjct: 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI----ASRVNEMLGLVHMQEFAKRK 146
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQR R+ALAR++ + +LD+ + A+D ++ + + + T ++
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 791 THNV-QAISAADMVVVMDKGQVKWIGS 816
TH+ +A++ A + +M++G+ IG
Sbjct: 207 THDQEEAMTMAGRIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 17/208 (8%)
Query: 1214 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1273
+ + G +G++G GAGK+++L A+ L P G + V G VP
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-----ASPGKGWRHIGYVP 55
Query: 1274 QSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEK------CHVKEEVEAVGLETFVKESGI 1325
Q E + + H M+ L + V++ + VGL
Sbjct: 56 QR---HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG 112
Query: 1326 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHR 1384
S GQRQ + +ARAL VL LDE +D T +L G ++ H
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
Query: 1385 ISTVLNMDEILILDHGHLVEQGNPQTLL 1412
++ + + ++L +G ++ G PQ L
Sbjct: 173 LAQAMATCDRVVLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+++ ++ Y PA L DIN T+E G + ++G +G GK+++LN + P G I
Sbjct: 1 MLQISHLYADY-GGKPA-LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSL--RDNLDPFHMNDDLKIWSVLEKCHVK 1308
+DG PV VV Q+ EG L R+ D L +++ +
Sbjct: 59 TLDG-----KPVEGPGAERGVVFQN----EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIA 109
Query: 1309 EEVEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
++ VGLE K S GQRQ + +ARAL + ++L LDE +DA T +Q
Sbjct: 110 HQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
Query: 1368 AISS--ECKGMTVITIAHRISTVLNMDEILIL---DHGHLVE 1404
+ + G V+ I H I + M L+L G +VE
Sbjct: 170 LLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 24/223 (10%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT-- 1260
A+ D++ + I+G +G GKS++L ++ R+ + G+IL+D +I +
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 1261 -PVRDLRGRFAVVPQSPFLFEG-SLRDN-LDPFHMNDDLK-------IWSVLEKCHVKEE 1310
PV +R R +V Q P F S+ DN + + +N + + S L++ + +E
Sbjct: 79 DPV-SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
V+ +K + + S GQ+Q +C+AR + +V+ +DE + +D + ++ I
Sbjct: 138 VK-----DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 1371 SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
+ T+I + H + + D G LVE G + +
Sbjct: 193 ELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235
|
Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 46/242 (19%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT------------PICGGQILVDGL 1255
AL ++ I + ++G +G GKS+ L L R+ + G I DG+
Sbjct: 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119
Query: 1256 NIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---------------------DPFHMND 1294
N++ +LR R +V QSP F S+R+N+ D D
Sbjct: 120 NLV-----ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174
Query: 1295 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354
+L + L + + +EV + ++ + S GQ+Q +C+AR L +V+ +DE
Sbjct: 175 EL-VERSLRQAALWDEVN-----DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 1355 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDE--ILILDHGHLVEQGNPQTLL 1412
+ +D S +++ I + TV+ + H + + + + L G LVE + +
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIF 288
Query: 1413 QD 1414
++
Sbjct: 289 EN 290
|
Length = 305 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 30/189 (15%)
Query: 1207 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1266
A ++FT+ G + + G G+GK+++L L L+P G++L++G P+ R
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG-----GPLDFQR 68
Query: 1267 GRFAVVPQSPFLFEG---------SLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGL 1316
A L+ G S+ +NL +H + D ++ L + VGL
Sbjct: 69 DSIA----RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALAR---------VGL 115
Query: 1317 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-- 1374
F S GQ++ + LAR LL + LDE T +D + A++ C
Sbjct: 116 NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175
Query: 1375 GMTVITIAH 1383
GM V+T
Sbjct: 176 GMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 13/200 (6%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN-ALFRLTP--IC 1246
G++ +NV++R S L ++NFTI G V ++G +G GKS++L+ + L C
Sbjct: 1 GMLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSC 58
Query: 1247 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC 1305
G++ ++ + P + + ++ Q LF S+ NL F + LK +
Sbjct: 59 TGELWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNL-LFALPATLK--GNARRN 113
Query: 1306 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
+E GL+ + + S GQR + L RALL K L LDE + +D
Sbjct: 114 AANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF 173
Query: 1366 QNAISSECK--GMTVITIAH 1383
+ + SE + G+ + + H
Sbjct: 174 RQWVFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 1189 QGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1246
+ F + + P AL DI+F G ++G GAGKS++L L
Sbjct: 2 SPYLSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD 57
Query: 1247 GGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLK-IWSVLE 1303
G IL+DG + L A++ Q L E ++ +NL + + L
Sbjct: 58 AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLL 117
Query: 1304 KCHVKEEVEAVGL----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+E++E +G+ +T +K S+GQRQ++ +A+AL ++++V+ DE T+++ A
Sbjct: 118 NYEAREQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 1360 QTASILQNAISS-ECKGMTVITIAHRISTVLNMDEI 1394
+ L I +G ++ ++HR M+EI
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHR------MEEI 203
|
Length = 501 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 60/234 (25%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI 674
+Y + L ++L +PK + A+IG G GKS+LL L M G +
Sbjct: 16 YYGDKH-----ALKDINLDIPKNKVTALIGPSGCGKSTLLRC-LNRMNDLIPGARVEGEV 69
Query: 675 AY---------------------VPQVPWILSGTIRDNILFG------KNYDPQSYSET- 706
V Q P +I DN+ +G K+ + E+
Sbjct: 70 LLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESS 129
Query: 707 LKACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 764
LK L +V L + + LSGGQ+ RL +ARA+ ++ ++D+ SA+
Sbjct: 130 LKKAALWDEVKDRL---------HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180
Query: 765 D----AQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 811
D ++ I L+K T ++ THN+ QA +D G++
Sbjct: 181 DPISTLKIEELITE--------LKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
|
Length = 253 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 30/216 (13%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI----------------HA 670
LN VSL +P G + VIG G+GKS+L+ + T GS+ A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 671 SGSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
I + Q +LS T+ N+ D E + T ++ +VG +G+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVT---ELLALVG-----LGD 132
Query: 730 KG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
K NLSGGQ+ R+A+ARA+ + + D+ SA+D + IL L
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 786 TRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
T +L TH + + D V V+ G++ G+ +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 35/201 (17%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTPICGGQ 1249
++EF+NV+ Y L D++F I+ G ++ IVG GAGKS++L L L P+ G
Sbjct: 321 VLEFENVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
+ + + I Q RD LDP D + + E +
Sbjct: 380 KVGETVKI------------GYFDQH--------RDELDP----DKTVLEELSEGFPDGD 415
Query: 1310 EVEAVG-LETF------VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
E E L F ++ S G++ + LA+ LL+ +L LDE T ++D ++
Sbjct: 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475
Query: 1363 SILQNAISSECKGMTVITIAH 1383
L+ A+ + +G TV+ ++H
Sbjct: 476 EALEEAL-LDFEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 52/235 (22%)
Query: 600 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-- 657
SK++ + +Q+ T S Y E +NV + +P+G + A+IG G GKS++L S+
Sbjct: 8 ISKNIIISLQNVTIS-YGTFEAVKNVFCD-----IPRGKVTALIGPSGCGKSTVLRSLNR 61
Query: 658 ---LGEMMLTHGSIHASGSIAYVPQV---------------PWILSGTIRDNILFGK--- 696
L E G + G+ Y P+V P +I +NI FG
Sbjct: 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARIN 121
Query: 697 ----NYDPQSYSETLKACTLD--VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750
+ D KA D D + E G +LSGGQ+ RL +AR +
Sbjct: 122 GYTGDMDELVERSLRKAAVWDECKD----------KLNESGYSLSGGQQQRLCIARTIAI 171
Query: 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADM 802
++ ++D+ SA+D ++ + + H L+K T ++ THN+ QA+ +DM
Sbjct: 172 EPEVILMDEPCSALDP-ISTLKIEETM---HELKKNFTIVIVTHNMQQAVRVSDM 222
|
Length = 269 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 15/219 (6%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILV--DGLNIINT 1260
AL +IN + ++G +G GKS+ L R+ + G+I++ D +NI++
Sbjct: 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90
Query: 1261 PVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1318
V ++R R ++V Q P F S+ +N+ +K S+LE+ V+ + L
Sbjct: 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE-RVENALRNAALWD 149
Query: 1319 FVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1374
VK+ + S GQ+Q +C+ARAL ++L DE T+ +D + ++ IS
Sbjct: 150 EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN 209
Query: 1375 GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
+T++ + H + + D + G L+E G T+
Sbjct: 210 KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248
|
Length = 265 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-09
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRD 1264
A++D+NF++ G +GIVG +G+GKS AL L GG +G I+N P ++
Sbjct: 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90
Query: 1265 L-RGR---FAVVPQSPFLFEGSLRDNLDPF-HMNDDLKIWSVLEKCHVKEE--------V 1311
L + R +++ Q P +L+P+ + + L +L K K E +
Sbjct: 91 LNKLRAEQISMIFQDPM-------TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRML 143
Query: 1312 EAVGLETFVKESGI---SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASI 1364
+AV + K + FS G RQ + +A ALL K+L DE T +D AQ ++
Sbjct: 144 DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 1365 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1407
L N + E +I I H + V + D++L++ G +E GN
Sbjct: 204 L-NELKREF-NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT-- 1260
A+ D+N IE + +G +G GKS++L L R+ + G++L+DG ++
Sbjct: 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78
Query: 1261 -PVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AV 1314
PV +R +V Q P F S+RDN+ LK+ V K + E VE
Sbjct: 79 DPV-AVRRTIGMVFQRPNPFPTMSIRDNVVA-----GLKLNGVRNKKDLDELVEKSLRGA 132
Query: 1315 GLETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDE-CTA 1355
L VK+ G S GQ+Q +C+ARA+ VL +DE C+A
Sbjct: 133 NLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178
|
Length = 258 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 25/229 (10%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E + VT + A+ +I+F + G G++G GAGK++ + L G+I
Sbjct: 3 LEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVK 1308
+G ++ +++ R +P+ E L + D LK + L K ++
Sbjct: 61 WNGGP-LSQEIKN---RIGYLPE-----ERGLYPKMTVE---DQLKYLAELKGMPKAEIQ 108
Query: 1309 EEVEAVGLE----TFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
++++A LE K I S G +Q I A++ ++L LDE + +D
Sbjct: 109 KKLQAW-LERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE 167
Query: 1364 ILQNAI-SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1410
+L++AI + +G T+I +HR+ V + D +L+L G V G +
Sbjct: 168 LLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED 216
|
Length = 300 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNII--NT 1260
AL +IN I I+G +G GKS+ + L R L P G+IL NI +
Sbjct: 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVEAV---- 1314
V +LR +V Q P F S+ DN+ P KI + +K + E VE
Sbjct: 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGP-------KIHGIKDKKTLDEIVEKSLRGA 151
Query: 1315 ----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
L+ + ++ S GQ+Q +C+AR L V+ +DE T+ +D + ++ +
Sbjct: 152 AIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
Query: 1371 SECKGMTVITIAH 1383
K ++I + H
Sbjct: 212 ELKKDYSIIIVTH 224
|
Length = 271 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270
D++FT+ G + I G GAGK+++L L L G++ G I N
Sbjct: 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES------- 72
Query: 1271 VVPQSPFLFEG---SLRDNLDPFHMNDDLKIWSVLEKCH----VKEEVEAVGLETFVKES 1323
L+ G ++ L ++L W + E + VGL
Sbjct: 73 --YHQALLYLGHQPGIKTELTAL---ENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP 127
Query: 1324 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1380
S GQ++ + LAR L + + LDE +D + ++L +++ G+ ++T
Sbjct: 128 VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 41/245 (16%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1247
++ F V+ Y ALH+++ I G V ++G GAGK+++L L CG
Sbjct: 5 MLSFDKVSAHYGKI--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTL------CGDPR 56
Query: 1248 ---GQILVDGLNIINTPV-RDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1302
G+I+ DG +I + + +R A+VP+ +F ++ +NL M
Sbjct: 57 ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENL---AMGGFFA----- 108
Query: 1303 EKCHVKEEVEAVG------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
E+ +E ++ V E ++ +G + S G++Q++ + RAL+ ++L LDE +
Sbjct: 109 ERDQFQERIKWVYELFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167
Query: 1357 VDAQTASILQNAISSECK-----GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1410
+ A I+ I + GMT+ + + L + D +L++GH+V +
Sbjct: 168 L----APIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDA 223
Query: 1411 LLQDE 1415
LL +E
Sbjct: 224 LLANE 228
|
Length = 237 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-09
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 43/203 (21%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686
++ VS + +G + ++GE G GKS+L ILG T G I
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI------------------ 70
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA--YIGEKGVNLSGGQRARLAL 744
+ GK+ S E + L++ + + + Y E LSGGQR R+ +
Sbjct: 71 -----LFEGKDITKLSKEERRER-VLELLEKVGLPEEFLYRYPHE----LSGGQRQRIGI 120
Query: 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR----ILCTHN---VQAI 797
ARA+ + + D+ +SA+D V IL N + LQ+ + +H+ V+ I
Sbjct: 121 ARALALNPKLIVADEPVSALDVSVQAQIL-NLLKD---LQEELGLTYLFISHDLSVVRYI 176
Query: 798 SAADMVVVMDKGQVKWIGSSADL 820
S D + VM G++ IG + ++
Sbjct: 177 S--DRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 27/214 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
++ V+ + +G + +G G+GK++ + + + T G+ +G
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 673 SIAYVPQ---VPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
SI VPQ V L+G R+N+ + G+ Y + + L+ ++
Sbjct: 67 SIGIVPQYASVDEDLTG--RENLEMMGRLYG---LPKDEAEERAE---ELLELFELGEAA 118
Query: 729 EKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
++ V SGG R RL +A ++ H D+ LD+ + +D + R + + I T
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR-AIWDYIRALKEEGVTI 177
Query: 788 ILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+L TH + +A D + ++D G++ G+ +L
Sbjct: 178 LLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 45/221 (20%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------- 672
VS L +G +A+IGE GSGKS+L + G + T G I +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 673 -----SIAYVP--QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG--GD 723
+ + P ++ IL +R N + +P+ + + TL MVG D
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLN----TDLEPEQRRKQIFE-TLR-----MVGLLPD 141
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
A L+ GQ+ R+ALARA+ I + D+ L+++D + R L N ++ +
Sbjct: 142 HANYYPH--MLAPGQKQRVALARALILRPKIIIADEALASLDMSM-RSQLINLML--ELQ 196
Query: 784 QKTRILCTHNVQAISA----ADMVVVMDKGQVKWIGSSADL 820
+K I + Q I +D V+VM +G+V GS+AD+
Sbjct: 197 EKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 21/201 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 673
L +SL +P+GS A++G G+GKS+LL + G + G + G
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 674 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ V Q P + S T+ D++ FG P + V+ +L + +
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFG----PVNMGLDKDEVERRVEEALKAVRMWDFRDKPP 136
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+LS GQ+ R+A+A + D+ +LD+ ++ +D + ++ + H KT I+ T
Sbjct: 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRLHNQGKTVIVAT 195
Query: 792 HNVQ-AISAADMVVVMDKGQV 811
H+V A AD V+V+ +G+V
Sbjct: 196 HDVDLAAEWADQVIVLKEGRV 216
|
Length = 274 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 35/215 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-LGEM----MLTHGSIHASGSIAYVP 678
VL+ + L + G +VA+IG GSGK++LL I L E + G I + +
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 679 Q----------VPWILSG-------TIRDNILFG----KNYDPQSYSETLKACTLDVDIS 717
Q V ++ T+ +NI+ G K + + + V ++
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA 135
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
G + +Y LSGGQ+ R+A+ARA+ ++ + D+ SA+D ++ +L N I
Sbjct: 136 ---GKETSYPRR----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL-NTI 187
Query: 778 MGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQV 811
++T ++ TH + A AD + MD+G++
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
Length = 250 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 4e-09
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 620 EEEQNV-VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 673
E+E +V LN VS + KG V++IG+ GSGKS+ I G G + G
Sbjct: 15 EKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE 74
Query: 674 --------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q P + T+ D++ FG E +K VD +L+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR----VDEALLAVNM 130
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMG 779
+ + + LSGGQ+ R+A+A + +I +LD+ S +D ++ R I + I
Sbjct: 131 LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI--HEIKE 188
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
+ L T + TH++ +++D ++VM G++
Sbjct: 189 KYQL--TVLSITHDLDEAASSDRILVMKAGEI 218
|
Length = 277 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
+LN +S L G + G G GKS+LL + + T G++ G
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 674 ---IAYVPQVPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
++Y Q P + T+ DN++F + DP + + L+ L I
Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTIL-------- 131
Query: 726 YIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
K + LSGG++ R++L R + + +LD++ SA+D ++ I Q
Sbjct: 132 ---TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH-NVNEIIHRYVREQ 187
Query: 785 KTRIL-CTHNVQAISAADMVVVM 806
+L TH+ I+ AD V+ +
Sbjct: 188 NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL ++L + G +V + G GSGK++LL I G + GS+ G
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+I Y+ Q +L T R N+ P + + + ++ +G + Y
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--- 785
NLSGGQ+ R+A+ARA+ H + + D+ +A+D++ R ++ ++QK
Sbjct: 140 H---NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE-------LMQKLAR 189
Query: 786 ----TRILCTHNVQAISAADMVVVMDKGQVK 812
T ++ TH+ + + AD +V M+ G++
Sbjct: 190 EQGCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 4e-09
Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 48/236 (20%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L ++ G + I+G +G+GKS+ L + L G I+V+G I VRD G+
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI--NLVRDKDGQ 78
Query: 1269 FAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWS---VLEKCHVKEEVEAVGL------- 1316
V ++ LR L H N +WS VLE ++ ++ +GL
Sbjct: 79 LKVADKNQL---RLLRTRLTMVFQHFN----LWSHMTVLENV-MEAPIQVLGLSKQEARE 130
Query: 1317 --ETFVKESGIS----------FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQ 1360
++ + GI S GQ+Q + +ARAL +VL DE T+ +D +
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 1361 TASILQNAISSECKGMTVIT----IAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1412
I+Q ++ E K M V+T A +S+ ++ L G + E+G P+ L
Sbjct: 191 VLRIMQQ-LAEEGKTMVVVTHEMGFARHVSS-----HVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 40/221 (18%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPICGGQILVDGLNIINTPVRDL 1265
L+D++ +E G + I+G +G+GK+++L+A+ GQIL +G +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK- 81
Query: 1266 RGRFAVVPQSPFLFEG-SLRDNLD-------PFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1317
A V Q L G ++R+ L P +D ++ K+ VE V L
Sbjct: 82 --CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR----------KKRVEDVLLR 129
Query: 1318 ---------TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
VK GI S G+R+ + +A LL KVL LDE T+ +D+ TA L +
Sbjct: 130 DLALTRIGGNLVK--GI--SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185
Query: 1369 ISSECK-GMTVITIAHRI-STVLNM-DEILILDHGHLVEQG 1406
+S + VI H+ S + + D IL+L G +V G
Sbjct: 186 LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-09
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 22/218 (10%)
Query: 1212 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1270
++ + G + +VG GAGKS++L + L P G I G + +L R R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1271 VVPQSPFLFEGSLRDNLDPFHMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1326
+ Q F + F D + + E EA+GL+ + S
Sbjct: 74 LSQQQTPPF------AMPVFQYLTLHQPDKTRTEAVAS-ALNEVAEALGLDDKLGRSVNQ 126
Query: 1327 FSVGQRQLICLARALLK-------SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTV 1378
S G+ Q + LA +L+ + ++L LDE ++D + L +S C +G+ V
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAV 186
Query: 1379 ITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDE 1415
+ +H ++ L + D + +L G L+ G +L E
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
Length = 248 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 20/206 (9%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPIC- 1246
++ +N+ + Y L A+ ++ I +G +G GKS+IL N L L P
Sbjct: 10 VLRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR 67
Query: 1247 -GGQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNL------DPFHMNDDLK 1297
G++ G N+ V ++R R +V Q P F S+ DN+ + + + D
Sbjct: 68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 1298 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
+ L + + +EV+ +K+SG+S S GQ+Q +C+ARA+ +V+ +DE + +
Sbjct: 128 VERSLRQAALWDEVKDK-----LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182
Query: 1358 DAQTASILQNAISSECKGMTVITIAH 1383
D + ++ + + T+I + H
Sbjct: 183 DPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-09
Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 55/231 (23%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ VSL + G + A++GE G+GKS+L+ + G G I G
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 674 ---IAYVPQ----VPWILSGTIRDNILFGK---------NYDPQSYSETLKACT---LDV 714
IA V Q VP + ++ +NI G+ + + LD+
Sbjct: 82 AAGIATVHQELSLVPNL---SVAENIFLGREPTRRFGLIDRK-AMRRRARELLARLGLDI 137
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
D +VG +LS QR + +ARA+ + + +LD+ +A+ + L
Sbjct: 138 DPDTLVG-----------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE-RLF 185
Query: 775 NAIMGPHMLQK---TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
+ I L+ I +H + + AD + V+ G + +G+ A
Sbjct: 186 DLI---RRLKAQGVAIIYISHRLDEVFEIADRITVLRDG--RVVGTRPTAA 231
|
Length = 500 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 28/162 (17%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ-VP 681
+L VSL L G + ++G G+GKS+LL + GE+ G + + Y+ Q P
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76
Query: 682 WILSGTIRDNIL--FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV------- 732
T+ D ++ FG+ + + E A D D L+ + G
Sbjct: 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAE 136
Query: 733 ----------------NLSGGQRARLALARAVYHGSDIYMLD 758
+LSGG R R+ALARA+ D+ +LD
Sbjct: 137 EALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
|
Length = 530 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 5e-09
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 1187 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1246
P + E + V + Y L AL D++ I + +G +G GKS++L R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1247 GGQILVDGLNIINTPVRD-------LRGRFAVVPQSPFLFEGSLRDNL------DPFHMN 1293
G + L + + D LR + +V Q P F S+ +N+ + + N
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1294 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353
D + L + + EEV+ +KE G + S GQ+Q +C+ARA+ VL +DE
Sbjct: 134 LDELVEDSLRRAAIWEEVKDK-----LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188
Query: 1354 TANVDAQTASILQNAISSECKGMTVITIAHRI 1385
+ +D + ++ + T+I + H +
Sbjct: 189 CSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 37/239 (15%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----C 1246
IE N+ + Y + + ++ I ++G +G GKS++L RL +
Sbjct: 5 IETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1247 GGQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEG-SLRDN----------LDPFHMN 1293
G++ + G NI + V ++R +V Q P F ++ DN +
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122
Query: 1294 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353
D+ W+ L+K + +EV+ + + + S GQRQ + +ARAL K+L +DE
Sbjct: 123 DERVEWA-LKKAALWDEVK-----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 1354 TANVDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQG 1406
TAN+D + ++ + K T++ + H R+S D + L G L+E G
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVS-----DYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 43/224 (19%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 671
V+N VSL + G +V ++G G+GK++ I+G + G I A
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78
Query: 672 GSIAYVPQVPWILSG-TIRDNIL-----FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I Y+PQ I T+ DNI+ K+ E L A + I+
Sbjct: 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-------H 131
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI--LSNAIMG 779
K +LSGG+R R+ +ARA+ +LD+ + VD + R I L + +G
Sbjct: 132 LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 780 PHMLQKTRILCT-HNV-QAISAADMVVVMDKGQVKWIGSSADLA 821
+L T HNV + + D ++ G+V GS ++
Sbjct: 192 --------VLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 6e-09
Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 20/208 (9%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNI-INTPVRDLRGR 1268
D++F++ G +G+ G GAG++ ++ ALF P G + ++G + I P + +R
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 1269 FAVVPQS-------PFLFEGS--LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1319
A+VP+ P L G L F ++I + E + ++ + ++T
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFK--MRIDAAAELQIIGSAIQRLKVKTA 395
Query: 1320 VKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASI--LQNAISSECKG 1375
I S G +Q LA+ LL + +VL LDE T VD I L N ++ E G
Sbjct: 396 SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE--G 453
Query: 1376 MTVITIAHRISTVLNM-DEILILDHGHL 1402
+ +I ++ ++ VL + D +L++ G L
Sbjct: 454 VAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 26/206 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672
L+ +S L +GS VA++G GSGKS+L+ + + G+I +G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
++ V Q P + T+ ++ FG KN+ +SE +A + VG
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSED-EAKEKALKWLKKVGLSEDL 138
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
I + LSGGQ R+A+A + + +I LD+ + +D + R + T
Sbjct: 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE-GRKEMMQLFKDYQKAGHT 197
Query: 787 RILCTHNVQAISA-ADMVVVMDKGQV 811
IL THN+ ++ AD V+V++ G++
Sbjct: 198 VILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 39/218 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 676
VL+ ++ + G VA+IG GSGKS++L ++ + G I G Y
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 677 VPQVPWILSGTIRDNI--LFGKNYDPQSYSETLKACTLD--VDISLMVGG---------- 722
VP L +R+ I +F QS++ LD + ++V G
Sbjct: 75 VPADEKHLR-QMRNKIGMVF------QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRA 127
Query: 723 ----DMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
DM + +K LSGGQ+ R+A+ARA+ + + D+V SA+D ++ +L+
Sbjct: 128 MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 775 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQV 811
T +L TH + A AD V DKG++
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 47/200 (23%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASG----------S 673
+L VS G L A++G G+GKS+LLN++ G G + +G
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
I YVPQ D+IL TL V +LM + +G
Sbjct: 84 IGYVPQ----------DDILHP---------------TLTVRETLMFAAKL-----RG-- 111
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LSGG+R R+++A + + LD+ S +D+ A ++S + +T I H
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-LLRRLADTGRTIICSIHQ 170
Query: 794 VQA--ISAADMVVVMDKGQV 811
+ D ++++ +G+V
Sbjct: 171 PSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 8e-09
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 39/253 (15%)
Query: 1189 QGLIEFQN--VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-- 1244
Q L+ +N V R + ++ ++D++ IE G + +VG +G+GKS ++ RL P
Sbjct: 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 1245 ---ICGGQILVDGLNIINTPVRDLRG----RFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1297
G I G ++++ + LRG + A++ Q P + +L+P H + +
Sbjct: 63 PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPLH-TLEKQ 114
Query: 1298 IWSVLEKCHVKEEVEAVGLETF--VKESGI------------SFSVGQRQLICLARALLK 1343
++ VL H EA E + GI S G+RQ + +A ALL
Sbjct: 115 LYEVLS-LHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT 173
Query: 1344 SSKVLCLDECTANVDAQT-ASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDH 1399
++L DE T +D A ILQ + E M ++ I H +S V + D + ++ +
Sbjct: 174 RPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLADRVAVMQN 232
Query: 1400 GHLVEQGNPQTLL 1412
G VEQ TL
Sbjct: 233 GRCVEQNRAATLF 245
|
Length = 529 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 9e-09
Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 30/217 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH-------------ASG 672
VL+ V L + +GSLV ++G G+GK++LL +I G + T G++ AS
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 673 SIAYVPQVPWI-LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+A VPQ + +R + G+ + + V+ ++ G +
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV 137
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA-------QVARWILSNAIMGPHMLQ 784
+LSGG+R R+ LARA+ + + +LD+ +++D ++ R ++ +
Sbjct: 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG-------- 189
Query: 785 KTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
KT + H++ A D +V++ G+V+ G AD+
Sbjct: 190 KTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 22/209 (10%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270
DIN I G V VG +G GKS++L + L I G + + + + P + RG
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE-RG-VG 78
Query: 1271 VVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG----LETFVKE 1322
+V QS P L S+ +N M+ LK+ +K + + V V L +
Sbjct: 79 MVFQSYALYPHL---SVAEN-----MSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDR 129
Query: 1323 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1380
+ S GQRQ + + R L+ V LDE +N+DA ++ IS K G T+I
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189
Query: 1381 IAHRISTVLNM-DEILILDHGHLVEQGNP 1408
+ H + + D+I++LD G + + G P
Sbjct: 190 VTHDQVEAMTLADKIVVLDAGRVAQVGKP 218
|
Length = 369 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 9e-09
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 13/263 (4%)
Query: 1153 TETEKEMVSLERVLEYMDVPQE----ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1208
T E+ + E + E M+ P+ ++ P G+ +N+ ++PS A
Sbjct: 888 TREERALEKTEPLTEEMEDPEHPEGINDSFFERELPGL-VPGVC-VKNLVKIFEPSGRPA 945
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
+ +N T +G GAGK++ L+ L L P G +LV G + I T + +R
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD-IETNLDAVRQS 1004
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE--VEAVGLETFVKESGIS 1326
+ PQ LF F+ + W E+ ++ E +E GL E
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1386
S G ++ + +A A + +KV+ LDE T+ VD + + + + G T+I H +
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD 1121
Query: 1387 TV-LNMDEILILDHGHLVEQGNP 1408
L D I I+ G L G P
Sbjct: 1122 EADLLGDRIAIISQGRLYCSGTP 1144
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-08
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASG 672
+EEQNV + V+ ++ E GSG+ S + G+++L I
Sbjct: 1244 GDEEQNVGMKNVNE-------FSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRN 1296
Query: 673 SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ V Q P + + +I +NI FGK + + K +D I + +G G
Sbjct: 1297 LFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYG 1356
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+LSGGQ+ R+A+ARA+ I +LD+ S++D+ + I + KT I
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 792 HNVQAISAADMVVVMD 807
H + +I +D +VV +
Sbjct: 1417 HRIASIKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 24/233 (10%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M +I C Y ++E LN ++ P+ S +AVIG G+GKS+L G +
Sbjct: 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP 56
Query: 664 THGSIHASGS-------------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLK 708
T GS+ G + V Q P I S T+ +I FG P + +
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG----PINLGLDEE 112
Query: 709 ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
V +L + G +LSGG++ R+A+A + + +LD+ + +D Q
Sbjct: 113 TVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172
Query: 769 ARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
+ ++ P T I TH + + AD + VMDKG++ G+ ++
Sbjct: 173 VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 43/227 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
Q V +N VSL + +G + ++G GSGKS+LL I + T G + G
Sbjct: 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKE 95
Query: 673 --------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
S A +P T+ +N+ FG +E + ++
Sbjct: 96 LRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERAAEALE--- 146
Query: 719 MVG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+VG Y E LSGG + R+ LARA+ DI ++D+ SA+D + R + +
Sbjct: 147 LVGLEGWEHKYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI-RREMQD 201
Query: 776 AIMGPH-MLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
++ LQKT + TH++ +A+ D + +M G++ +G+ ++
Sbjct: 202 ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-08
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 20/232 (8%)
Query: 1191 LIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1247
L+E +++ Y PS L I+ I G V IVG +G+GKS+++N L L
Sbjct: 4 LLELKDIRRSY-PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 1248 GQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1302
G V G ++ L R F F+F+ L +L + +++ L
Sbjct: 63 GTYRVAGQDVATLDADALAQLRREHFG------FIFQRYHLLSHLTAAQNVEVPAVYAGL 116
Query: 1303 EKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
E+ + +GLE V+ S GQ+Q + +ARAL+ +V+ DE T +D
Sbjct: 117 ERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 1359 AQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1409
+ + + + +G TVI + H + ++ + G +V Q
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQ 228
|
Length = 648 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 45/214 (21%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--QVPW- 682
L VS +PKG V + G G+GKS+LL I GE T G I +G ++ + ++P+
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 683 -------------ILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ T+ +N+ GK P+ + LD +VG
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP--PREIRRRVSE-VLD-----LVG--- 126
Query: 725 AYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ K LSGG++ R+A+ARA+ + + + D+ +D ++ I+
Sbjct: 127 --LKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEI 183
Query: 781 HMLQKTRILCTHNVQAISAADM---VVVMDKGQV 811
+ L T ++ TH+++ + M V+ ++ G++
Sbjct: 184 NRLGTTVLMATHDLELV--NRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 33/216 (15%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 673
L VS +PKG +++G GSGKS++ ++G + G I +
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 674 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSET---LKACTLDVDISLMVGGDMAYIG 728
I V Q P + ++ ++ FG Y E + VD+ +
Sbjct: 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM-------LERAD 137
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR- 787
+ LSGGQ+ R+A+A + + +LD+ S +D AR L + + ++
Sbjct: 138 YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-ARQNLLDLV---RKVKSEHN 193
Query: 788 ---ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
I TH++ AD V+VM+KG V G+ ++
Sbjct: 194 ITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 39/206 (18%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-------------LGEMMLTHGSIHAS 671
V+L+ ++L + KG + A+IGE GSGKS+LLN I G+ S AS
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 672 ----GSIAYVPQ-VPWILSGTIRDNILFGKNYDPQSYSETLKA---CTLDVDISLMVGGD 723
+ Y+ Q I + T+ +N+ G Y S E + V ++L
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL----- 126
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ +K LSGG++ R+ALARA+ + + D+ ++D + + ++ +L
Sbjct: 127 --KLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-----RDEVL-DLLL 178
Query: 784 Q-----KTRILCTHNVQAISAADMVV 804
+ KT I+ TH+ + AD V+
Sbjct: 179 ELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 616 YCNNEE-EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-- 672
Y +NEE + + L+ V+L + KG + ++G GSGKS++ + ++ + G ++ G
Sbjct: 14 YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73
Query: 673 ------------SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
V Q P I++ + +++ FG P++ + VD SL
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG----PENLGIPPEEIRERVDESL 129
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
G Y LSGGQ+ R+A+A + + + D+ + +D R ++ N I
Sbjct: 130 KKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV-NTIK 188
Query: 779 GPHMLQK----TRILCTHNVQAISAADMVVVMDKGQVKWIGS 816
L K T IL TH ++ AD ++VMD G+V G+
Sbjct: 189 E---LNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 56/221 (25%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+LN +SL LP G + A+IG G GKS+LL + G++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKN-----------YDPQSYSETLKACTLDVDISLMV 720
+A +PQ G T+R+ + +G++ D ++ ++ ++
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN------- 129
Query: 721 GGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--QVARWILSNAI 777
+A ++ + +LSGGQR R LA + + + +LD+ + +D QV +
Sbjct: 130 --HLA---DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV-------EL 177
Query: 778 MGPHMLQ------KTRILCTHNV-QAISAADMVVVMDKGQV 811
M +++ KT + H++ QA D +VV+ G V
Sbjct: 178 MR--LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHV 216
|
Length = 255 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 45/232 (19%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG----------EMMLTHGSIHAS 671
Q+ L+ V L + G +VA++G GSGKS+LL + G + L ++
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 672 GSIA-----------YV-PQVPWILSGTIRDNILFG------------KNYDPQSYSETL 707
G +A Y+ Q + ++ +N+L G + + L
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 708 KACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
+A T VG M + + V+ LSGGQ+ R+A+ARA+ + + + D+ ++++D
Sbjct: 135 QALT-------RVG--MVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDP 185
Query: 767 QVARWILSNAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSS 817
+ AR ++ T ++ H V A+ + +V + +G V + GSS
Sbjct: 186 ESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
Length = 262 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 2e-08
Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 72/213 (33%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +N++ Y L L DI+ TI G ++G+VGR GAGKS+ L +L I G
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKST----LLKL--IAGELEP 52
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
+G + Q
Sbjct: 53 DEG-----IVTWGSTVKIGYFEQ------------------------------------- 70
Query: 1312 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1371
S G++ + LA+ LL++ +L LDE T ++D ++ L+ A+
Sbjct: 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
Query: 1372 ECKGMTVITIAH-R--ISTVLNMDEILILDHGH 1401
G TVI ++H R + V +I+ L+ G
Sbjct: 116 Y-PG-TVILVSHDRYFLDQVAT--KIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-----FRLTPICGGQILVDGLNIINTPV- 1262
L +N T++ G I+G G+GKS++ + + +T G+IL DG +I+
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT---EGEILFDGEDILELSPD 76
Query: 1263 -RDLRGRFAVVPQSPFLFEG-SLRDNL----------DPFHMNDDLKIWSVLEKCHVKEE 1310
R G F + Q P G + D L ++ E + EE
Sbjct: 77 ERARAGIF-LAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
LE +V E FS G+++ + + LL K+ LDE + +D I+ I+
Sbjct: 136 F----LERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188
Query: 1371 S-ECKGMTVITIAH--RISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
+ +G V+ I H R+ + D++ +L G +V+ G+P+ + E
Sbjct: 189 ALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELE 236
|
Length = 251 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 19/224 (8%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+I F++V+ Y AL + F + G + G +GAGKS++L + + G+I
Sbjct: 1 MIRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 1251 LVDGLNII---NTPVRDLRGRFAVVPQSP-FLFEGSLRDNLD-PFHM----NDDLKIWSV 1301
G +I N V LR + ++ Q L + ++ DN+ P + DD++
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRR--- 116
Query: 1302 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQ 1360
V ++ VGL K I S G++Q + +ARA++ VL DE T N+D A
Sbjct: 117 ----RVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 1361 TASILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHGHLV 1403
+ IL+ G+TV+ H I + +L L GHL
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 18/199 (9%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
VL+ +SL + KG + +G G+GK++ + ILG + G I G
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74
Query: 686 GTIRDNILFGKNYDPQSYSETLKA-CTL------DVDISLMVGGDMAYIGEKGVNLSGGQ 738
G + + F Y + E L+ L +D L V G +K S G
Sbjct: 75 GALIEAPGF---YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGM 131
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARW----ILSNAIMGPHMLQKTRILCTHNV 794
+ RL +A A+ D+ +LD+ + +D + ILS G +L + +L +
Sbjct: 132 KQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL--SEI 189
Query: 795 QAISAADMVVVMDKGQVKW 813
Q + AD + +++KG++
Sbjct: 190 QKV--ADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-08
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 20/176 (11%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ Q V Y + I+ + G + +VG +G GKS++L + L I G+I
Sbjct: 4 LKLQAVRKSYDGKTQV-IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62
Query: 1252 VDGLNIINT--PV-RDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHV 1307
+ G ++N P RD+ A+V Q+ L+ S+R+N M LKI + K +
Sbjct: 63 IGG-RVVNELEPADRDI----AMVFQNYALYPHMSVREN-----MAYGLKIRGM-PKAEI 111
Query: 1308 KEEVEAV----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+E V LE + S GQRQ + + RA+++ V DE +N+DA
Sbjct: 112 EERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 39/230 (16%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
L+ +NV++ + L D++ ++ G + ++G GAGKS+++ + L G I
Sbjct: 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQS-------PFLFEGSLRDNLDPFHMNDDLKIWSVLE 1303
R+ + R VPQ P LR L P +D I L+
Sbjct: 62 -----------KRNGKLRIGYVPQKLYLDTTLPLTVNRFLR--LRPGTKKED--ILPALK 106
Query: 1304 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQT 1361
+ ++A K SG G+ Q + LARALL ++L LDE T VD Q
Sbjct: 107 RVQAGHLIDA----PMQKLSG-----GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 1362 ASI-LQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQ 1409
A L + + E V+ ++H + V+ DE+L L+H H+ G P+
Sbjct: 158 ALYDLIDQLRREL-DCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPE 205
|
Length = 251 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 49/203 (24%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHASG-- 672
L +S+ + + S+VA IG G GKS+ L N ++ GE+ + +I+ G
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDISL 718
++ V Q P +I +N+ +G + Q ETLK L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILS 774
+ E LSGGQ+ RL +ARA+ + ++D+ SA+D A+V I
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI-- 189
Query: 775 NAIMGPHMLQK--TRILCTHNVQ 795
H L+K T ++ THN+Q
Sbjct: 190 ------HELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 46/210 (21%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 669
+Y +EQ L+ VS+ +P+ + A+IG G GKS+ L I L + G +
Sbjct: 48 FY---GDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT 102
Query: 670 ASGSIAY---------------VPQVPWILSGTIRDNILFG-------KNYDPQSYSETL 707
G Y V Q P +I DN+ +G + D + E+L
Sbjct: 103 FRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID-ERVEESL 161
Query: 708 KACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ L +V L G++LSGGQ+ RL +ARA+ ++ ++D+ SA+D
Sbjct: 162 RRAALWDEVKDQL---------DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 766 AQVARWILSNAIMGPHMLQKTRILCTHNVQ 795
I ++ + T ++ THN+Q
Sbjct: 213 PVATSKI--EDLIEELAEEYTVVIVTHNMQ 240
|
Length = 285 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---- 1247
I+ ++++ Y S A+ I+ I I+G +G GKS+ + L R++ + G
Sbjct: 8 IKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 1248 -GQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1304
G + G NI + + LR + +V Q P F S+ +N+ ++I + L +
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENV-----AYGVRISAKLPQ 120
Query: 1305 CHVKEEVEAV----GLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
+ E VE+ L VK+ S + S GQ+Q +C+ARAL KVL +DE +
Sbjct: 121 ADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180
Query: 1357 VDAQTASILQNAISSECKGMTVITIAHRI 1385
+D ++ I S +T+ + H +
Sbjct: 181 LDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 8/208 (3%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI---INTPVRDLRG 1267
+I+ T+ G I+G +G GK+++L + G+IL DG NI + + +R
Sbjct: 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84
Query: 1268 RFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1326
R +++ QS LF + ++ DN+ + + + ++ + L V ++EAVGL K
Sbjct: 85 RMSMLFQSGALFTDMNVFDNV-AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSE 143
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECKGMTVITIAHR 1384
S G + LARA+ ++ DE D T +L IS + G+T + ++H
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
Query: 1385 ISTVLNM-DEILILDHGHLVEQGNPQTL 1411
+ VL++ D I+ +V G+ Q L
Sbjct: 204 VPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 5e-08
Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 35/273 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSIL----GEMMLTHGSIHAS-------- 671
LN SL K + VIG GSGKS+++ N ++ G+ ++ +I A+
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 672 ---GSIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
I V Q P + TI +I FG ++ E K + +V Y
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLK---LVQLPEDY 143
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+ LSGGQ+ R+ALA + + +LD+ +D + + N + K
Sbjct: 144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKK 202
Query: 787 R-ILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQE 844
R I+ THN+ Q + AD V+VM +G+V IGS ++ +S E T + + +
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI--------FSNQELLTKIEIDPPK 254
Query: 845 M-RTNASSANKQILLQEKDVVSVSDDAQEIIEV 876
+ + NK I L K++ ++ + A+E+ +V
Sbjct: 255 LYQLMYKLKNKGIDLLNKNIRTIEEFAKELAKV 287
|
Length = 289 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 32/203 (15%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M + ++ +C E + + + +S L G + + G G+GK++LL + G +
Sbjct: 1 MMLEAENLSC------ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP 54
Query: 664 THGSIHASGS-IAYVPQVP-----WI--LSG-----TIRDNILFGKNYDPQSYSETLKAC 710
G ++ G I V + ++ G T +N+ F + + + T+
Sbjct: 55 DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEA 114
Query: 711 TLDVDISLMVGGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ-V 768
V +A + + V LS GQ+ R+ALAR + +++LD+ +A+D + V
Sbjct: 115 LAQVG--------LAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
Query: 769 ARWILSNAIMGPHMLQKTRILCT 791
A A+M H Q +L T
Sbjct: 167 ALL---TALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHAS 671
+ + V L +PK + A IG G GKS++L N ++ G++ +++A
Sbjct: 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82
Query: 672 G--------SIAYVPQVPWILSGTIRDNILFGK-------NYDPQSYSETLKACTL--DV 714
I V Q P +I DNI +G + D + +L+ L +V
Sbjct: 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMD-ELVERSLRQAALWDEV 141
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
L + G++LSGGQ+ RL +ARA+ ++ ++D+ SA+D I
Sbjct: 142 KDKLK---------QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI-- 190
Query: 775 NAIMGPHMLQKTRILCTHNV-QAISAADM 802
+M Q T I+ THN+ QA +DM
Sbjct: 191 EELMHELKEQYTIIIVTHNMQQAARVSDM 219
|
Length = 264 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 27/226 (11%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLRG 1267
++D++FT+ G +G+ G GAG++ ++ L+ P G + +DG + +P L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 1268 RFAVVPQSP----FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-------L 1316
+ + + S+++N+ + + L+ +E +AV +
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKH---ADEQQAVSDFIRLFNI 384
Query: 1317 ETFVKESGISF-SVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSE 1372
+T E I S G +Q + +AR L+ KVL LDE T VD I Q N +E
Sbjct: 385 KTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444
Query: 1373 CKGMTVITIAHRISTVLNM-DEILILDHGHL-----VEQGNPQTLL 1412
G+++I ++ + VL M D IL++ G + EQ + L+
Sbjct: 445 --GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQATQEKLM 488
|
Length = 501 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 63/260 (24%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E +++ RY L ++ G + I+G +G+GKS+ L + L G I
Sbjct: 7 LEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 1252 VDGLNIINTPVRD-------------LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1298
V+G I +D LR R +V Q F NL HM
Sbjct: 65 VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH-F--------NLWS-HM------ 108
Query: 1299 WSVLE-------------KCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARAL 1341
+VLE K E E VG+ S GQ+Q + +ARAL
Sbjct: 109 -TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167
Query: 1342 LKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVIT----IAHRISTVLNMDE 1393
+V+ DE T+ +D + ++Q ++ E + M V+T A +S+
Sbjct: 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQ-DLAEEGRTMVVVTHEMGFARDVSS-----H 221
Query: 1394 ILILDHGHLVEQGNPQTLLQ 1413
++ L G + E+G P+ +
Sbjct: 222 VIFLHQGKIEEEGPPEQVFG 241
|
Length = 256 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-08
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 1210 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNI-INTPVRDLRG 1267
D++F++ G +GI G GAG++ ++ LF P G+I +DG + I P + +
Sbjct: 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338
Query: 1268 RFAVVPQSPFLFEGSLRDNLDPFHMN----------DDLKIWSVL----EKCHVKEEVEA 1313
A+VP E RD + P M D S + E + E ++
Sbjct: 339 GIAMVP------EDRKRDGIVPV-MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQR 391
Query: 1314 VGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASI--LQNAI 1369
+ ++T E I S G +Q LA+ LL + K+L LDE T +D I L N +
Sbjct: 392 LKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL 451
Query: 1370 SSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1402
+ G+ +I I+ + VL + D +L++ G L
Sbjct: 452 VQQ--GVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-08
Identities = 60/247 (24%), Positives = 116/247 (46%), Gaps = 30/247 (12%)
Query: 1191 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1247
+I+ +NV+ RY + A+ +++ ++ G GIVG +GAGK+++ + +
Sbjct: 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 1248 GQILV---DGLNIINTPVRDLRGR----FAVVPQSPFLF-EGSLRDNL---------DPF 1290
G++ V D + P D RGR ++ Q L+ ++ DNL D
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL 398
Query: 1291 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1350
+K L+ EE L+ + E S G+R + LA+ L+K +++ L
Sbjct: 399 AR---MKAVITLKMVGFDEEKAEEILDKYPDE----LSEGERHRVALAQVLIKEPRIVIL 451
Query: 1351 DECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1407
DE T +D T + ++I + E T I ++H + VL++ D ++ G +V+ G+
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511
Query: 1408 PQTLLQD 1414
P+ ++++
Sbjct: 512 PEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-08
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 39/226 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
++ ++ V+ +G A++G+ GSGKS+L+ +I + T G++
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 673 -------SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGG 722
I V Q P + T+ I+FG KN+ + +K + + L
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN--LDEVKNYAHRLLMDLGFSR 136
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
D+ + + +SGGQ ++A+ + DI +LD+ + +D Q R ++ +
Sbjct: 137 DV--MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-------L 187
Query: 783 LQ-------KTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
L+ KT IL +H++ ++ AD V+VM +G + S +L
Sbjct: 188 LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 8e-08
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 49/220 (22%)
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------------- 672
+ LP + A+ G GSGK+SL+N I G G I +G
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 673 -SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
I YV Q P T+R N+ +G ++ D ++L+ G +
Sbjct: 76 RRIGYVFQDARLFPHY---TVRGNLRYGMWKSMRAQ--------FDQLVALL--GIEHLL 122
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
LSGG++ R+A+ RA+ ++ ++D+ L+++D R IL L++ R
Sbjct: 123 DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP-------YLERLR 175
Query: 788 -------ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819
+ +H++ + AD VVV++ G+VK G +
Sbjct: 176 DEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 17/203 (8%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASGSIAYVP-----Q 679
L + +G VA++G G+GKS+LLN I G + GS+ H + + P Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 680 VPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
+ S T+ NI G +P + L I+ +G + + LSGGQ
Sbjct: 79 ENNLFSHLTVAQNIGLG--LNPGLKLNAAQREKLH-AIARQMGIE-DLLARLPGQLSGGQ 134
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ-AI 797
R R+ALAR + I +LD+ SA+D + + +L+ Q T ++ +H+++ A
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAA 194
Query: 798 SAADMVVVMDKGQVKWIGSSADL 820
A +V+ G++ W G + +L
Sbjct: 195 RIAPRSLVVADGRIAWDGPTDEL 217
|
Length = 232 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-08
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 619 NEEEQNVV-LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGS- 673
+ V+ ++ SL + +G + ++G GSGKS+LL ++ G ++ GS+ GS
Sbjct: 31 LDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSV 90
Query: 674 -----------------IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTL 712
++ V Q +PW T+ +N+ FG +E K
Sbjct: 91 DVANCDAATLRRLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKR--- 144
Query: 713 DVDISL-MVGGDM---AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
VD L +VG GE LSGG + R+ LARA + I ++D+ SA+D
Sbjct: 145 -VDEQLELVGLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-08
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 24/163 (14%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG---EMMLTHGSIHASG---------- 672
+LN VSL + G ++A++G GSGK++LL++I G T G I +G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 673 SIAYVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+AYV Q +L G T+R+ + + + + L D++L G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 769
G +SGG+R R+++A + + +LD+ S +D+ A
Sbjct: 142 KG-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 41/211 (19%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672
L+ VSL + KG + + G G+GK++LL + G + + G + +G
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 673 --SIAYVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDM 724
I V Q +L T+ +N+ GK + + A L VG
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGK--KEREIQRRVGA-ALR-----QVG--- 126
Query: 725 AYIGEKGVN----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ K LSGG++ R+A+ARA+ + + + D+ +D ++ IL + +
Sbjct: 127 --LEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL-DLLKRL 183
Query: 781 HMLQKTRILCTHNVQAISA-ADMVVVMDKGQ 810
+ T I+ TH++ + A V+++D G+
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 45/206 (21%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI--LGEMMLT---HGSIHASGSIAY 676
+ +L V+L +PK S+ A+IG G GKS+ + ++ + +++ G I+ G Y
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Query: 677 VP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL- 712
P Q P +I DN+ +G +++ + E+LKA L
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALW 133
Query: 713 -DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 771
+V L D + +G LSGGQ+ RL +AR + ++ ++D+ SA+D ++
Sbjct: 134 DEVKDKL----DKSALG-----LSGGQQQRLCIARTIAVSPEVILMDEPCSALDP-ISTT 183
Query: 772 ILSNAIMGPHMLQK--TRILCTHNVQ 795
+ + I H L++ T ++ THN+Q
Sbjct: 184 KIEDLI---HKLKEDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 48/209 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY---------- 676
+ + + K + A+IG GSGKS+ L S L M T +G I Y
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRS-LNRMNDTIDIARVTGQILYRGIDINRKEI 94
Query: 677 -----------VPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVD 715
V Q P + +I +NI F K + +LK L V
Sbjct: 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK 154
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
L + + LSGGQ+ RL +ARA+ DI ++D+ SA+D ++ L
Sbjct: 155 DDL---------HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP-ISTMQLEE 204
Query: 776 AIMGPHMLQK--TRILCTHNV-QAISAAD 801
+ L+K T I+ THN+ QA A+D
Sbjct: 205 TMF---ELKKNYTIIIVTHNMQQAARASD 230
|
Length = 267 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M++ + T + QN L++VS KG +V +G G+GKS+ + I G +
Sbjct: 1 MSIRVSSLTKLY-----GTQNA-LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP 54
Query: 664 THGSIHASG------------SIAYVPQ-VPWILSGTIRDNILF-GKNY--DPQSYSETL 707
GS+ G +I Y+P+ P L +R+ + F Y Q + +
Sbjct: 55 DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV 114
Query: 708 KACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
+ +++ + IG+ LS G R R+ LA+A+ H + +LD+ + +D
Sbjct: 115 EEM---IELVGLRPEQHKKIGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLD-- 165
Query: 768 VARWILSNAIMGPHML------QKTRILCTHNVQAISA-ADMVVVMDKGQV 811
N ++ + KT IL TH +Q + A D V++++KG++
Sbjct: 166 ------PNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 45/223 (20%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L++++ +++ G V ++GR+G GKS++ L L G + G P+ L
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG-----EPLAKLNRA 82
Query: 1269 ------------F-----AVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEE 1310
F AV P+ ++R+ + P L L + E
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRK------TVREIIREPLRHLLSLDKAERLAR--ASEM 134
Query: 1311 VEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
+ AV L K S GQ Q +CLARAL K+L LDE +N+D +LQ
Sbjct: 135 LRAVDLDDSVLDKRPP-QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL----VLQAG 189
Query: 1369 ISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVE 1404
+ K G + I H + V ++++D+G +VE
Sbjct: 190 VIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 25/223 (11%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTP--ICGGQILVDGLNIINTPVRDL 1265
L +++ + G + ++G +GAGK++++NAL FR G +L++G+ I +++
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI---DAKEM 97
Query: 1266 RGRFAVVPQSPFLFEGSL--RDNL---DPFHMNDDLKIWSVLEKCH-VKEEVEAVGL--- 1316
R A V Q LF +L R++L M + + EK V E ++A+GL
Sbjct: 98 RAISAYVQQDD-LFIPTLTVREHLMFQAHLRMPRRV---TKKEKRERVDEVLQALGLRKC 153
Query: 1317 -ETFVKESGI--SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1373
T + G S G+R+ + A LL +L DE T+ +D+ A + +
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 1374 -KGMTVITIAHRISTVL--NMDEILILDHGHLVEQGNPQTLLQ 1413
KG T+I H+ S+ L D+I+++ G + G+P +
Sbjct: 214 QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 39/199 (19%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV----DGLNIINTPVR- 1263
L +++ ++ G V + G +G+GKS++L +L+ GQILV + ++++ R
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 1264 --DLRGR--------FAVVPQ--------SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1305
++R V+P+ P L G R+ K +L +
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVA-------RAKAADLLTRL 139
Query: 1306 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
++ E + ++ TF SG G++Q + +AR + +L LDE TA++DA +++
Sbjct: 140 NLPERLWSLAPATF---SG-----GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
Query: 1366 QNAIS-SECKGMTVITIAH 1383
I ++ +G ++ I H
Sbjct: 192 VELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 59/245 (24%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 673
+ ++ VS L KG ++ ++GE GSGKS L +I+G + + I G
Sbjct: 13 TDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI-VGGEILFDG 71
Query: 674 ------------------IAYVPQVP-------WILSGTIRDNILFGKNYDPQSYSETLK 708
IA + Q P + I + + + ++ +
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE-R 130
Query: 709 ACTLDVDISLMVGGDMAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSA 763
A +++ +VG E+ + LSGG R R+ +A A+ + + D+ +A
Sbjct: 131 A----IELLELVGIPDP---ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183
Query: 764 VDAQVARWILSNAIMGPHMLQKTR-------ILCTHNVQAIS-AADMVVVMDKGQVKWIG 815
+D V IL +L++ + IL TH++ ++ AD V VM G++ G
Sbjct: 184 LDVTVQAQILD-------LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236
Query: 816 SSADL 820
++
Sbjct: 237 PVEEI 241
|
Length = 316 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSIHASG-- 672
L+ +SL + + A+IG G GKS+ L + GE++L +I+
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVDI 716
+ V Q P +I +N+ +G K Y + +L+ L +V
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD 141
Query: 717 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 776
L E + LSGGQ+ RL +ARA+ ++ ++D+ SA+D +A +
Sbjct: 142 RL---------HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEEL 191
Query: 777 IMGPHMLQK--TRILCTHNVQ 795
I H L+ T I+ THN+Q
Sbjct: 192 I---HELKARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 112/549 (20%), Positives = 199/549 (36%), Gaps = 75/549 (13%)
Query: 285 GLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLS 344
GLL +N ++ L L +FL G L + ++ ++ + + + +
Sbjct: 31 GLLAFINQALIETADTSLLVLPEFL----GLL--LLFMVSSLISQLGLTTLGQHFIY--- 81
Query: 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAW--SL 402
KLRS + +K L L + ++ D R ++ A S ++
Sbjct: 82 ----KLRSEFI----KKILDTPLERIERLGSARLLAGLTSDV-RNISFAFSRLPELVQAI 132
Query: 403 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ----KDERIR 458
+G A YL Y K +T++ I V W ++ K M +D+
Sbjct: 133 ILTLGSAAYLAYLSPKM-----FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQN 187
Query: 459 RTGEILTHIRTLKMYG--WEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 516
IL + L + E + ++ L + E +H R W + L
Sbjct: 188 DYQTILEGRKELTLNRERAEYVHNN-LYIPDAQEYRHHIIRANTFHLLAVNW-SNIMLLG 245
Query: 517 LFTFGLFALMGHQL-----DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 571
L GL + L + A + LF L +PL S ++ L+ A ++ ++ +
Sbjct: 246 LI--GLVFWLALSLGWASTNVAATIVLVLLF--LRTPLLSAVGILPTLLTAQVAFNKIAK 301
Query: 572 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVS 631
+ YK + + P + L +++ ++ ++ + ++
Sbjct: 302 L-ELAPYKADFPRPQAFPDW--KTLE----------LRNVRFAY-----QDNAFHVGPIN 343
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP---WILSGTI 688
L + +G LV +IG GSGKS+L + G G I G Q+ + S
Sbjct: 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 689 RDNILF-----GKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742
D LF + PQ + L+ L SL G + + LS GQ+ RL
Sbjct: 404 SDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLN-DGRFS-----NLKLSTGQKKRL 457
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADM 802
AL A+ DI +LD+ + D R + KT +H+ AD
Sbjct: 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADR 517
Query: 803 VVVMDKGQV 811
++ M GQ+
Sbjct: 518 LLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
V +N SL + +G + ++G GSGKS+L+ + + T G I G
Sbjct: 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Query: 673 -----SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I+ V Q +P T+ +N+ FG +E + +++ + G
Sbjct: 102 ELRRKKISMVFQSFALLPHR---TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA 158
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
Y E LSGG + R+ LARA+ + DI ++D+ SA+D + + + L
Sbjct: 159 DKYPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 784 QKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGS 816
+KT + TH++ A+ D + +M G++ +G+
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 36/187 (19%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---- 1264
++FT+ G + + G G+GK+++L + L P G I +DG +I + V +
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 1265 LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVKEEVEAVGLETFVK 1321
L R A+ P L ++ +NL+ F W+ E+ + +EAVGL
Sbjct: 78 LGHRNAM---KPAL---TVAENLE-F--------WAAFLGGEELDIAAALEAVGL----- 117
Query: 1322 ESGIS------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK- 1374
+ ++ S GQ++ + LAR L+ + + LDE TA +DA ++ I +
Sbjct: 118 -APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176
Query: 1375 -GMTVIT 1380
G+ +
Sbjct: 177 GGIVIAA 183
|
Length = 207 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTH 792
LSGGQR R+A+ R + +++LD+ LS +DA + R + I H L +T I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL-RVQMRIEISRLHKRLGRTMIYVTH 192
Query: 793 N-VQAISAADMVVVMDKGQVKWIGSSADL 820
+ V+A++ AD +VV+D G+V +G +L
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-07
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 35/208 (16%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
L ++N I+ G V +VG++GAGK+++L + G + + P +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS- 456
Query: 1268 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS- 1326
A++P G + + L S + E+ + +G+S
Sbjct: 457 --ALIP-------GEYEPEFGEVTILEHL--RSKTGDLNAAVEI--------LNRAGLSD 497
Query: 1327 ----------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--K 1374
S GQ++ LA+ L + VL +DE A++D TA + IS
Sbjct: 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA 557
Query: 1375 GMTVITIAHR--ISTVLNMDEILILDHG 1400
G+T+I + HR + L D ++++ +G
Sbjct: 558 GITLIVVTHRPEVGNALRPDTLILVGYG 585
|
Length = 593 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 48/233 (20%)
Query: 1210 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI------------ 1257
++ I G I+G G GKS++L L RL G + +DG +I
Sbjct: 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83
Query: 1258 ------INTP----VRDL--RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1305
TP V++L RGR+ P P W ++
Sbjct: 84 GLLAQNATTPGDITVQELVARGRY---PHQPLFTR------------------WRKEDEE 122
Query: 1306 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
V + ++A G+ +S + S GQRQ +A L + + ++ LDE T +D L
Sbjct: 123 AVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182
Query: 1366 QNAIS--SECKGMTVITIAHRISTVLNMDEILI-LDHGHLVEQGNPQTLLQDE 1415
+S + KG T+ + H ++ LI L G +V QG P+ ++ E
Sbjct: 183 LELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 24/204 (11%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
+ L+ +S + KG + ++G G+GK++ + ILG ++ G + G
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR 71
Query: 674 IAYVPQVPWILSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
I Y+P+ G + D ++ Y Q + +D L Y
Sbjct: 72 IGYLPEE----RGLYPKMKVIDQLV----YLAQLKGLKKEEARRRIDEWLERLELSEYAN 123
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
++ LS G + ++ AV H ++ +LD+ S +D V +L + I KT I
Sbjct: 124 KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVI 182
Query: 789 LCTHNVQAISA-ADMVVVMDKGQV 811
L TH ++ + D V++++KG+
Sbjct: 183 LSTHQMELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 30/214 (14%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ VL VSL + KG +VA++G GSGKS+LL+ + G T G + +G
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSS 74
Query: 673 ---------SIAYVPQVPWILSG-TIRDNI---LFGKNYDPQSYSETLKACTLDVDISLM 719
+ ++ Q +L T +N+ L + E V +
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-- 132
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
I + LSGG+R R+A+ARA+ + + + D+ +D A+ I + ++
Sbjct: 133 -----HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF-DLMLE 186
Query: 780 PHMLQKTR-ILCTHNVQAISAADMVVVMDKGQVK 812
+ T ++ TH+++ D V+ M GQ+
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 57/238 (23%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 669
+Y +N V+ V L +P+ + A++G G GKS+LL + L E G +
Sbjct: 13 YYGSNH-----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR 67
Query: 670 ASGSIAYVPQVPWILSG----------------TIRDNILFGKNYD---------PQSYS 704
G Y P V I TI DN+ G + +
Sbjct: 68 LFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVE 127
Query: 705 ETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 764
LK L ++ + + NLSGGQR RL +ARA+ I ++D+ + +
Sbjct: 128 WALKKAALWDEVK-------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANI 180
Query: 765 D----AQVARWILSNAIMGPHMLQK--TRILCTHN-VQAISAADMVVVMDKGQVKWIG 815
D A++ + L+K T +L TH+ QA +D V + G++ +G
Sbjct: 181 DPVGTAKIEELLFE--------LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-------DGLNIINT 1260
L +++ T+ G V + G +GAGKS++L +L+ G+ILV D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1261 PVRDLRGR--------FAVVPQSPFL--FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
V ++R + V+P+ L L + P + +L + ++ E
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVP-REAARARARELLARLNIPER 141
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
+ + TF SG G++Q + +AR + +L LDE TA++DA ++ I+
Sbjct: 142 LWHLPPATF---SG-----GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA 193
Query: 1371 S-ECKGMTVITIAH 1383
+ +G +I I H
Sbjct: 194 EAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 3e-07
Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 42/167 (25%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFG 695
G ++ ++G GSGK++L ++ E+ G + + G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVI-------------YIDGE-------- 39
Query: 696 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755
D+ ++ + +G K + SG R RLALA A D+
Sbjct: 40 -----------------DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 756 MLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILCTHNVQAIS 798
+LD++ S +DA+ +L + +L K ++ T N +
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 54/241 (22%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L + IE +V +VGR GAGKS+++ L G +L DG I + R
Sbjct: 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKIL------NGEVLLDDGRIIYEQDLIVAR-- 70
Query: 1269 FAVVPQSP----------FLFEG--SLRDNLDPFH--------------MNDDLKIWSVL 1302
+ Q P F+ EG + L +H +N+ K+ L
Sbjct: 71 ---LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127
Query: 1303 EKCH---------VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353
+ H + E + +GL+ S S S G + L RAL+ + VL LDE
Sbjct: 128 D--HHNLWQLENRINEVLAQLGLDPDAALS--SLSGGWLRKAALGRALVSNPDVLLLDEP 183
Query: 1354 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVE-QGNPQTL 1411
T ++D +T L+ + + +G ++I I+H S + NM I+ LD G LV GN
Sbjct: 184 TNHLDIETIEWLEGFLKT-FQG-SIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241
Query: 1412 L 1412
L
Sbjct: 242 L 242
|
Length = 635 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
+ VS + +G + ++G G+GK++ + + + T G +G
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV 71
Query: 673 --SIAYVPQ---VPWILSGTIRDNI-LFGKNYD------PQSYSETLKACTLDVDISLMV 720
I V Q V L+G +N+ + + Y + E L L
Sbjct: 72 RRRIGIVFQDLSVDDELTG--WENLYIHARLYGVPGAERRERIDELLDFVGL-------- 121
Query: 721 GGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR---WILSNA 776
+ A ++ V SGG R RL +AR++ H ++ LD+ +D Q R W
Sbjct: 122 -LEAA---DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ-TRAHVWEYIEK 176
Query: 777 IMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+ + T +L TH + +A D V ++D G++ G+ +L
Sbjct: 177 LKEEFGM--TILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-07
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1269
+I+ + G +G+ G GAG++ + L+ L P GG+I+++G I L
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 1270 AVVP---QSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1325
+P QS L+ + L N+ N W +K E LE + + I
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHN-RRGFW-------IKPARENAVLERYRRALNI 392
Query: 1326 SF----------SVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECK 1374
F S G +Q + +A+ L S ++L +DE T VD + I Q S +
Sbjct: 393 KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452
Query: 1375 GMTVITIAHRISTVLNM-DEILILDHGHL 1402
+ V+ I+ + + M D +L++ G +
Sbjct: 453 NVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 63/251 (25%), Positives = 113/251 (45%), Gaps = 32/251 (12%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL---FRLTPI 1245
Q L+ + MR+ L A++++N + V ++G GAGK+++ N L ++ T
Sbjct: 3 QPLLSVSGLMMRFGGLL--AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-- 58
Query: 1246 CGGQILVDGLNIINTPVRDLRGRFAVVP--QSPFLF-EGSLRDNL---DPFHMNDDLKIW 1299
GG IL+ G +I P + R VV Q LF E ++ +NL + L +
Sbjct: 59 -GGTILLRGQHIEGLPGHQI-ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGL--F 114
Query: 1300 SVLEK--CHVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347
S L K + E EA VGL + + GQ++ + +AR ++ ++
Sbjct: 115 SGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174
Query: 1348 LCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1404
L LDE A ++ + L I+ +TV+ I H + V+ + D I +++ G +
Sbjct: 175 LMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234
Query: 1405 QGNPQTLLQDE 1415
G P+ + +
Sbjct: 235 NGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 1223 GIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIINTPVR--DLRGRFAVVPQS 1275
I+G +G GKS+ L L R+ + G++ NI V LR + ++V
Sbjct: 37 AIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPK 96
Query: 1276 PFLFEGSLRDNL---------DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1326
P LF S+ DN+ P DD+ + S L+ + +E++ + +S +
Sbjct: 97 PNLFPMSVYDNVAYGVKIVGWRPKLEIDDI-VESALKDADLWDEIK-----HKIHKSALD 150
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHR 1384
S GQ+Q +C+ARAL KVL +DE +D + +++ I S +T++ ++H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
Query: 1385 ISTVLNMDEILILDHGH 1401
+ V + + G+
Sbjct: 211 LHQVSRLSDFTAFFKGN 227
|
Length = 261 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672
L V+L + GS A IG GSGKS+++ + G + T GS+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYS-ETLKACTLDVDISLMVGGDMAY 726
+ V Q P + T+ ++ FG PQ++ +A L + +VG +
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFG----PQNFGVSQEEAEALAREKLALVGISESL 138
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+ LSGGQ R+A+A + I +LD+ + +D + R L H T
Sbjct: 139 FEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK-GRKELMTLFKKLHQSGMT 197
Query: 787 RILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
+L TH + ++ AD V V++KG++ G D+
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 43/221 (19%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
+ + L +S + KG +V IG G+GK++ L + G + T G + +G V
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---LV 84
Query: 678 P-------------------QVPWILSGTIRDNILFGK---NYDPQSYSETLKACTLDVD 715
P Q+ W L + D+ + P + + L + +D
Sbjct: 85 PWKRRKKFLRRIGVVFGQKTQLWWDLP--VIDSFYLLAAIYDLPPARFKKRLDELSELLD 142
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+ ++ + LS GQR R +A A+ H +I LD+ +D VA+ + N
Sbjct: 143 L-----EELLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV-VAQENIRN 194
Query: 776 AIMGPHMLQKTR----ILCTHNVQAISA-ADMVVVMDKGQV 811
+ + R +L +H ++ I A A V+V+DKG++
Sbjct: 195 FL---KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 35/217 (16%)
Query: 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEM 661
I+Q + S Y N ++ LN VSL + A+IG GSGKS+LL SI L
Sbjct: 5 ILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE 60
Query: 662 MLTHGSIHASGSIAYVP---------------QVPWILSGTIRDNILFGKNYDPQSYSET 706
+ GSI +G Y P Q P +I +N+++G +
Sbjct: 61 VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQV 120
Query: 707 LKACTLDVDISLMVGGDM-----AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 761
L V+ SL G + + + + LSGGQ+ R+ +AR + I +LD+
Sbjct: 121 LDEA---VEKSL-KGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176
Query: 762 SAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
SA+D A I + T +L T ++Q S
Sbjct: 177 SALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 28/189 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--QVP 681
L+ +++ + G V ++G G+GKS+LL I E + T G+I +G ++ + +P
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 682 W--------------ILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ + + +N+ F P+ + + A V +S
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS---HKHR 131
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
A E LSGG++ R+A+ARA+ + I + D+ +D I+ N + +
Sbjct: 132 ALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM-NLLKKINKAG 186
Query: 785 KTRILCTHN 793
T ++ TH
Sbjct: 187 TTVVVATHA 195
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMMLTHGSIHASG 672
+ L V L +P ++A IG G GKS+LL + G ++ +I+ S
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 673 --------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ V Q P +I +NI F + Y L D + ++
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRAN--GYKGNLDELVEDSLRRAAIWEEV 151
Query: 725 A-YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ EKG LSGGQ+ RL +ARA+ D+ ++D+ SA+D R + +
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-- 209
Query: 784 QKTRILCTHNVQAIS 798
Q T I+ THN+Q S
Sbjct: 210 QYTIIMVTHNMQQAS 224
|
Length = 274 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 6e-07
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 35/187 (18%)
Query: 1210 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269
++FT+ G V I G GAGK+S+L L L G++L G P+R R +
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG-----EPIRRQRDEY 72
Query: 1270 AVVPQSPFLFEGSL---RDNLDPF----------HMNDDLKIWSVLEKCHVKEEVEAVGL 1316
L+ G + L DD +W L + VGL
Sbjct: 73 H----QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ---------VGL 119
Query: 1317 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE-CTANVDAQTASILQNAISSECK- 1374
F S GQ++ + LAR L + + LDE TA +D Q + L+ ++ +
Sbjct: 120 AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA-IDKQGVARLEALLAQHAEQ 178
Query: 1375 -GMTVIT 1380
GM ++T
Sbjct: 179 GGMVILT 185
|
Length = 204 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY +L ++L + K + A IG G GKS+ L + GE+
Sbjct: 14 WY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD 68
Query: 663 LTHGSIHA--------SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD- 713
+ +++ + V Q P +I DN+ +G P+ + LD
Sbjct: 69 IDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG----PKLHGLAKNKKKLDE 124
Query: 714 -VDISLMVGGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
V+ SL G +G++ LSGGQ+ RL +ARA+ + ++D+ SA+D V
Sbjct: 125 IVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-V 183
Query: 769 ARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
A ++ N I L+K T I+ TH++ QA +D V G++ ++ ++
Sbjct: 184 ATNVIENLI---QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 9e-07
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 23/209 (11%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------S 673
SL + +G + ++G GSGKS+++ + + T G + G
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 674 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
IA V Q ++ T+ DN FG + E + LD +L G Y
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREK-ALD---ALRQVGLENYAHSYPD 163
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGG R R+ LARA+ DI ++D+ SA+D + + + Q+T + +H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 793 NV-QAISAADMVVVMDKGQVKWIGSSADL 820
++ +A+ D + +M G+V +G+ ++
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
Length = 400 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 62/225 (27%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
V + VSL + KG + A++GE G+GKS+L+ + G G I G
Sbjct: 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77
Query: 674 ---IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV--------DISL 718
I V Q VP + T+ +NI+ G E K +D ++S
Sbjct: 78 RLGIGMVHQHFMLVP---TLTVAENIILG--------LEPSKGGLIDRRQARARIKELSE 126
Query: 719 MVGGDM---AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD---VLSAVDAQVARW- 771
G + A + + LS G++ R+ + +A+Y G+ + +LD+ VL+ +
Sbjct: 127 RYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLT--PQEADELF 180
Query: 772 -ILSNAI-MGPHMLQKTRILCTH---NVQAISAADMVVVMDKGQV 811
IL G KT I TH V AI AD V V+ +G+V
Sbjct: 181 EILRRLAAEG-----KTIIFITHKLKEVMAI--ADRVTVLRRGKV 218
|
Length = 501 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 57/197 (28%), Positives = 81/197 (41%), Gaps = 40/197 (20%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGS--------------- 673
+ K + IG G GKS++L S+ L + G +H G
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 674 IAYVPQVPWILSGTIRDNILFG------KNYDPQSYSETLKACTL--DVDISLMVGGDMA 725
I V Q P S +I DN+ FG K L+ L +V L V
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV----- 145
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
G++LSGGQ+ RL +ARA+ ++ +LD+ SA+D R + +M
Sbjct: 146 ----SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV--EELMVELKKDY 199
Query: 786 TRILCTHNV-QAISAAD 801
T L THN+ QAI AD
Sbjct: 200 TIALVTHNMQQAIRVAD 216
|
Length = 261 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-06
Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 38/231 (16%)
Query: 1207 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL-------NIIN 1259
AA+ +++F+++ G + IVG +G+GKS AL RL GG + D + +I
Sbjct: 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89
Query: 1260 ------TPVRDLRGR-FAVVPQSPFLFEGSLRDNLDP-FHMNDDL-----------KIWS 1300
+R +RG A++ Q P +L+P F + + + + +
Sbjct: 90 LSEQSAAQMRHVRGADMAMIFQEPM-------TSLNPVFTVGEQIAESIRLHQGASREEA 142
Query: 1301 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360
++E + ++V +T + S G RQ + +A AL VL DE T +D
Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 1361 -TASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1407
A ILQ + E M VI I H + V + D +L++ G VE G+
Sbjct: 203 IQAQILQLIKVLQKEMS-MGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 19/226 (8%)
Query: 1206 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRD 1264
P I+F++ G VG+ G GAG+S ++ L+ T GQ+ +DG I I +P
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 1265 LRGRFAVVPQSPFLFEG-----SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVG 1315
+R + P+ EG S+ DN++ H+ I + E + + ++
Sbjct: 326 IRAGIMLCPEDR-KAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLN 384
Query: 1316 LETFVKESGISF-SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1374
++T +E I S G +Q L R L + KV+ LDE T +D + N I
Sbjct: 385 IKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 1375 -GMTVITIAHRISTVLNM-DEILILDHGHLV-----EQGNPQTLLQ 1413
G+ V+ ++ + VL + D I+++ G + EQ + L
Sbjct: 445 QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQALS 490
|
Length = 501 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 79/239 (33%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------I 674
V+ + L + G + ++G G GKS+LL + G +T G I G I
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI 78
Query: 675 AYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLK----------------ACTLDV 714
A V Q P + ++R+N+ +G LK A L++
Sbjct: 79 AMVFQNYALYPHM---SVRENMAYG-----------LKIRGMPKAEIEERVAEAARILEL 124
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWI 772
+ + K LSGGQR R+A+ RA+ +++ D+ LS +DA+ V
Sbjct: 125 E---------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRV---- 171
Query: 773 LSNAIMGPHM------LQK----TRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
M L + T + TH+ V+A++ AD VVVM+ G + IG+ ++
Sbjct: 172 --------QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
Length = 356 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 49/236 (20%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG--GQILVDG--LNIINTPVRD- 1264
D++F + G +GIVG +G+GKS++L L RL P G I+ G L + +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 1265 ---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF-- 1319
+R + V Q+P RD L M V ++ E + A+G +
Sbjct: 81 RRLMRTEWGFVHQNP-------RDGL---RMR-------VSAGANIGERLMAIGARHYGN 123
Query: 1320 --------VKESGI----------SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1361
++E I +FS G +Q + +AR L+ +++ +DE T +D
Sbjct: 124 IRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 183
Query: 1362 ASILQNAISSECK--GMTVITIAHRISTV-LNMDEILILDHGHLVEQGNPQTLLQD 1414
+ L + + + G+ VI + H + L +L++ G +VE G +L D
Sbjct: 184 QARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 58/258 (22%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1247
+ L+ ++ Y P D++F + G +GIVG +G+GK+++L + RLTP G
Sbjct: 4 KPLLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 1248 -------GQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1299
D + R L R + V Q+P RD L
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP-------RDGLRM---------- 104
Query: 1300 SVLEKCHVKEEVEAVG--------------LE------TFVKESGISFSVGQRQLICLAR 1339
V ++ E + A+G LE + + +FS G +Q + +AR
Sbjct: 105 QVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164
Query: 1340 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTV-LNMDEILI 1396
L+ +++ +DE T +D + L + + + G+ V+ + H ++ L D +++
Sbjct: 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMV 224
Query: 1397 LDHGHLVEQGNPQTLLQD 1414
+ G +VE G +L D
Sbjct: 225 MKQGQVVESGLTDRVLDD 242
|
Length = 258 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLR 1266
A+ D++F + G VGI G G G+S ++ A+ L G+IL++G +++ R+ R
Sbjct: 273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332
Query: 1267 GR-FAVVPQSPF----LFEGSLRDNL-------DPFHMNDDLKIWSVLEKCHVKE----- 1309
A VP+ + + SL +NL PF L + K +E
Sbjct: 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD-RRAIRK-FARELIEEF 390
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
+V A + + S S G +Q + LAR L + +L + T +D + +
Sbjct: 391 DVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 1370 SSECKGMTVITIAHRISTVLNMDEILIL 1397
+ + IS L DEIL L
Sbjct: 447 LELRDAGKAVLL---ISEDL--DEILEL 469
|
Length = 501 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-06
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
+L+ VSL L G +VA++G G+GKS+LL ++ GE+ G +
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
|
Length = 258 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
VL ++ +G ++A++G G+GKS+LL + G + G++ G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 674 ---IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+ V Q P + + + ++ FG P + + V +L G
Sbjct: 67 RQRVGLVFQDPDDQLFAADVDQDVAFG----PLNLGLSEAEVERRVREALTAVGASGLRE 122
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
LSGG++ R+A+A AV D+ +LD+ + +D +L+ + T +
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA-ILRRLRAEGMTVV 181
Query: 789 LCTHNV 794
+ TH+V
Sbjct: 182 ISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 52/221 (23%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL VSL + +G V ++G G GKS+L +LG G++ G
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 673 -----------SIAYV-PQ--VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
S + V P+ V I+ +R ++ +E L L +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED-- 143
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
+ LSGGQ R+ +ARA+ + +LD+ +S +D + IL
Sbjct: 144 --------ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE---- 191
Query: 779 GPHMLQKTR-------ILCTHNVQAI-SAADMVVVMDKGQV 811
+L+K + + TH+++ + S V VMDKGQ+
Sbjct: 192 ---LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 43/156 (27%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQVPW 682
++++ +S LP G +V VIG G+GKS+L I G+ G+I + +AYV Q
Sbjct: 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ--- 392
Query: 683 ILSGTIRDNILFGKNYDP-----QSYSETLKACTLDVDISLMVGG-DM---AYIG----- 728
RD + DP + S L DI + +G ++ AY+G
Sbjct: 393 -----SRDAL------DPNKTVWEEISGGL-------DI-IQLGKREVPSRAYVGRFNFK 433
Query: 729 ----EKGV-NLSGGQRARLALARAVYHGSDIYMLDD 759
+K V LSGG+R R+ LA+ + G ++ +LD+
Sbjct: 434 GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
E + LN +S +P+G +V +IG GSGKS+L N I G M G++ GS A +
Sbjct: 35 EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIA--- 91
Query: 682 WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-----LS 735
I SG + L G +N + + L + I ++ + A IG K + S
Sbjct: 92 -ISSGL--NGQLTGIENIELKGLMMGLTKEKIKEIIPEII--EFADIG-KFIYQPVKTYS 145
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVD 765
G ++RL A +V+ DI ++D+ LS D
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDEALSVGD 175
|
Length = 549 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 40/209 (19%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRDL 1265
L D + ++ G V ++GR G+G S++L AL T G I +G+
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY-------- 74
Query: 1266 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGL---ETFVKE 1322
FA ++ +D+ ++ V+E ++ FV+
Sbjct: 75 -KEFAEKYPGEIIYVSE-----------EDVHFPTLT----VRETLDFALRCKGNEFVR- 117
Query: 1323 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA----SILQNAISSECKGMTV 1378
GIS G+R+ + +A AL+ + VLC D T +D+ TA ++ ++ K T
Sbjct: 118 -GIS--GGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT-MADVLKTTTF 173
Query: 1379 ITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+++ + ++ D++L+L G + G
Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 59/247 (23%), Positives = 94/247 (38%), Gaps = 53/247 (21%)
Query: 1207 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG----------GQILVDGLN 1256
A L D++ IE G ++GR GAGKS++L AL + G G + ++G
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKAL--AGDLTGGGAPRGARVTGDVTLNGEP 72
Query: 1257 IINTPVRDLRGRFAVVPQSP---FLFEGSLRD--NLDPF----------HMNDDLKIWSV 1301
+ L AV+PQ+ F F S R+ L + H + ++ W
Sbjct: 73 LAAIDAPRLARLRAVLPQAAQPAFAF--SAREIVLLGRYPHARRAGALTHRDGEI-AWQA 129
Query: 1302 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK---------SSKVLCLDE 1352
L G V + S G+ + AR L + + L LDE
Sbjct: 130 LAL---------AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180
Query: 1353 CTANVD-AQTASILQN--AISSECKGMTVITIAHRIS-TVLNMDEILILDHGHLVEQGNP 1408
TA +D A +L ++ + + V+ I H + + D I +L G +V G P
Sbjct: 181 PTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
Query: 1409 QTLLQDE 1415
+L
Sbjct: 240 ADVLTPA 246
|
Length = 272 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQ-VPWILSGTIRD--- 690
+ ++ ++G G GK++ + + G + G I +++Y PQ + GT+RD
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS 83
Query: 691 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVY 749
+I P +E K ++ ++ ++ V LSGG+ R+A+A +
Sbjct: 84 SITKDFYTHPYFKTEIAKPLQIE---QIL---------DREVPELSGGELQRVAIAACLS 131
Query: 750 HGSDIYMLDDVLSAVDAQ--------VARWILSNAIMGPHMLQKTRILCTHNVQAIS-AA 800
+DIY+LD+ + +D + + R+ +N +KT + H++ I A
Sbjct: 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN--------EKTAFVVEHDIIMIDYLA 183
Query: 801 DMVVVMD 807
D ++V +
Sbjct: 184 DRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH------------ASG 672
VV+N +S + +G ++G G+GKS++ +LG + G I A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV 77
Query: 673 SIAYVPQVPWI-LSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+I VPQ + T+R+N+L FG+ + + ++ I ++ + A + K
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFG-------MSTREIEAVIPSLL--EFARLESK 128
Query: 731 G----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
LSGG + RL LARA+ + + +LD+ + +D AR ++ + KT
Sbjct: 129 ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKT 187
Query: 787 RILCTHNV-QAISAADMVVVMDKG 809
+L TH + +A D + V++ G
Sbjct: 188 ILLTTHFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 40/173 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQ- 679
Q VL+ VSL L G ++ ++G G+GKS+L+ +LG + G I +G I YVPQ
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQK 75
Query: 680 ------VPWILS-------GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+P ++ GT +++IL LK V ++ M
Sbjct: 76 LYLDTTLPLTVNRFLRLRPGTKKEDIL-----------PALKR----VQAGHLIDAPMQ- 119
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAI 777
LSGG+ R+ LARA+ + + +LD+ VD QVA + L + +
Sbjct: 120 ------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166
|
Length = 251 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 39/200 (19%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686
L S + G +V V+G GSG S+LL ++ T G++ G I Y
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN---RTEGNVSVEGDIHY---------N 70
Query: 687 TIRDNILFGKNYDPQS-YS--ETLKACTLDV----DISLMVGGDMAYIGEKGVNLSGGQR 739
I F + Y + Y E + TL V D +L G+ ++ +G+ SGG+R
Sbjct: 71 GI-PYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGN-EFV--RGI--SGGER 124
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
R+++A A+ + + D+ +D+ A IL + +L T ++
Sbjct: 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKC------IRTMADVLKTTTFVSLYQ 178
Query: 800 A--------DMVVVMDKGQV 811
A D V+V+ +G+
Sbjct: 179 ASDEIYDLFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-06
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 43/156 (27%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH--ASGSIAYVPQVP 681
++++ +S LP G +V +IG G+GKS+L I G+ G+I + +AYV Q
Sbjct: 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS- 395
Query: 682 WILSGTIRDNILFGKNYDP-----QSYSETLKACTLDVDISLMVGG-DM---AYIG---- 728
RD + DP + S L DI + VG ++ AY+G
Sbjct: 396 -------RDAL------DPNKTVWEEISGGL-------DI-IKVGNREIPSRAYVGRFNF 434
Query: 729 -----EKGV-NLSGGQRARLALARAVYHGSDIYMLD 758
+K V LSGG+R RL LA+ + G ++ +LD
Sbjct: 435 KGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470
|
Length = 556 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 53/206 (25%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGSIAYVPQV 680
L +S+ +PK + A IG G GKS+LL L + G I G Y +V
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 681 ---------------PWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVD 715
P +I +N+++G + ++ +L+ L +V
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK 159
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARW 771
L E LSGGQ+ RL +ARA+ ++ +LD+ SA+D ++
Sbjct: 160 DRL---------HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL 210
Query: 772 I--LSNAIMGPHMLQKTRILCTHNVQ 795
I L + + T ++ THN+Q
Sbjct: 211 ITELKS--------KYTIVIVTHNMQ 228
|
Length = 272 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
E + + + +S L G + V G GSGK++LL + G G + +G
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 673 -----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+ Y+ P I + ++ +N+ F + E ++ V +
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF---WHADHSDEQVEEALARVG--------LNG 117
Query: 727 IGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ-VAR 770
++ V LS GQ+ R+ALAR + G +++LD+ +A+D VAR
Sbjct: 118 FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 30/154 (19%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L++VSL + +G +V +IG G+GK++LL ++ G+ T G I G
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 673 -SIAYVPQVPWILSG-TIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
++A VP+ + S T+ +N+ G + + + E +K V + E
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK----------WVYELFPRLHE 129
Query: 730 KGVN----LSGGQRARLALARAVYHGSDIYMLDD 759
+ + +SGG++ LA+ RA+ + +LD+
Sbjct: 130 RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 46/200 (23%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIA 675
+N L + + +P LV V G GSGKS+L+N L +ASG
Sbjct: 7 NVHN-------LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----------YASGKAR 49
Query: 676 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGDMAY--IGEKGV 732
+ +S + +D + ++ + Y +G+K
Sbjct: 50 LIS--------------------FLPKFSRNK---LIFIDQLQFLIDVGLGYLTLGQKLS 86
Query: 733 NLSGGQRARLALARAVYHGSD--IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGG+ R+ LA ++ +++LD+ + + Q +L I G L T IL
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILI 145
Query: 791 THNVQAISAADMVVVMDKGQ 810
HN+ +S+AD ++ G
Sbjct: 146 EHNLDVLSSADWIIDFGPGS 165
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASGS- 673
L VS+ +P+ S+ A+IG G GKS+ L I G + L I+ G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 674 -------IAYVPQVPWILSGTIRDNI-----------------LFGKNYDPQSYSETLKA 709
+ V Q P +IR+NI L G++ D + E ++
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRD-DKDAEDELVER 179
Query: 710 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 769
+ V + + + LSGGQ+ RL +AR + ++ ++D+ SA+D +A
Sbjct: 180 SLRQAALWDEVNDRL---DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IA 235
Query: 770 RWILSNAIMGPHMLQK--TRILCTHNVQ 795
+ + I L + T ++ THN+Q
Sbjct: 236 TSKIEDLI---EELAEEYTVVVVTHNMQ 260
|
Length = 305 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 28/202 (13%)
Query: 1223 GIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVRDLRGRFAVVPQSPFLFE 1280
G+VG G GKS++ L L G +L G L+ + LR + A V Q P
Sbjct: 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP---- 86
Query: 1281 GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE---------VEAVGLETFVKESGISFSVGQ 1331
F+ + D I L V E + V + F + S GQ
Sbjct: 87 -----EQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQ 141
Query: 1332 RQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRIST 1387
++ + +A AL+ ++ L LDE TA +D Q +I++ ++ +G VI +H I
Sbjct: 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDL 198
Query: 1388 VLNM-DEILILDHGHLVEQGNP 1408
+ + D + +L G ++ G P
Sbjct: 199 IYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-----KTRI 788
LSGGQ+ R+A+ARA+ + + D+ SA+D ++ +L M T +
Sbjct: 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV------MKDLAEEGMTMV 189
Query: 789 LCTHNVQ-AISAADMVVVMDKGQV 811
+ TH + A AD V+ MD G++
Sbjct: 190 VVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 47/228 (20%)
Query: 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661
+ + +++ + N ++ +L +S + G A++G G+GK++LL+ + GE
Sbjct: 28 NEPLIELKNVSVR--RNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81
Query: 662 MLTHGSI---------------------HASGSIAYVPQVPWILSGTIRDNILFGKNYDP 700
+ G + S + +V T+RD +L G +
Sbjct: 82 PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE----TVRDVVLSGF-FAS 136
Query: 701 QS-YSETLKACTLDVDISLM-VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 758
Y E L A L L+ + G +LS G++ R+ +ARA+ ++ +LD
Sbjct: 137 IGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 759 DVLSAVDAQVARWILSNAI-------MGPHMLQKTRILCTHNVQAISA 799
+ +D +AR L N + P +L TH+ + I
Sbjct: 197 EPAQGLDL-IAREQLLNRLEELAASPGAPALL-----FVTHHAEEIPP 238
|
Length = 257 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 39/207 (18%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY E+Q L VS+ +PK S+ A+IG G GKS+ + I G++
Sbjct: 21 WY---GEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS 75
Query: 663 LTHGSIHASG--------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
+ I+ ++ V Q P +I DN+ +G P+ + K V
Sbjct: 76 IEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG----PRIHGANKKDLDGVV 131
Query: 715 DISLMVGGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
+ +L ++ ++LSGGQ+ RL +AR + I + D+ SA+D ++
Sbjct: 132 ENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-IST 190
Query: 771 WILSNAIMGPHMLQK--TRILCTHNVQ 795
+ + IM L+K T ++ THN+Q
Sbjct: 191 ARIEDLIMN---LKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-06
Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 54/218 (24%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +N++ + L + D++F + G VG++G GAGKS+ LFR+ I G +
Sbjct: 323 IEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKST----LFRM--ITGQEQP 374
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM--------NDDLKIWSVLE 1303
G I V + A V QS RD LDP D +++
Sbjct: 375 DSGTIKIGETV-----KLAYVDQS--------RDALDPNKTVWEEISGGLDIIQLGKR-- 419
Query: 1304 KCHVKEEVEA---VGLETFV-----KESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
EV + VG F K+ G S G+R + LA+ L VL LDE T
Sbjct: 420 ------EVPSRAYVGRFNFKGSDQQKKVG-QLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472
Query: 1356 NVDAQTASILQNAISSECKGMTVITIAH------RIST 1387
++D +T L+ A+ E G V+ I+H RI+T
Sbjct: 473 DLDVETLRALEEAL-LEFAGCAVV-ISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 7e-06
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 26/246 (10%)
Query: 1187 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1246
P + ++E +N+T +PS+ D++F + G +GI G GA ++ I+ LF +
Sbjct: 246 PGEVILEVRNLTSLRQPSI----RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 301
Query: 1247 GGQILVDGLNIIN-TPVRDLRGRFAVVPQ---SPFLFE------GSLRDNLD----PFHM 1292
G I + G I N + FA+V + S ++ SL N+ +
Sbjct: 302 AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGL 361
Query: 1293 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLD 1351
D+ ++ K + ++++ ++T + I S S G +Q + + R LL ++L LD
Sbjct: 362 LDNSRM-----KSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLD 416
Query: 1352 ECTANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1409
E T +D I Q K +I I+ + +L + D IL++ +G + + +
Sbjct: 417 EPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476
Query: 1410 TLLQDE 1415
T Q+E
Sbjct: 477 TTTQNE 482
|
Length = 491 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
+ VL ++L + G +VAV+G+ G+GK++LL ILG G Y P
Sbjct: 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK-------GRGEEKYRPDSGK 447
Query: 683 ILSGTIRDNILFGKNYDPQSYSET----LKACTLDVDISL----MVGGDMAYIGEKGVN- 733
+ + L Y+P+ T L++ T D++ ++ G A + + +
Sbjct: 448 VEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSE 507
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LS GQ+ R LA+ + ++ ++D+ + +D A + T I+ TH
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 794 VQAISA--ADMVVVMDKGQV 811
+ +A D ++++ G+V
Sbjct: 568 PEVGNALRPDTLILVGYGKV 587
|
Length = 593 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 9e-06
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 42/212 (19%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY E+Q LN ++L + + + A+IG G GKS+ L I GE++
Sbjct: 13 WY---GEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67
Query: 663 LTHGSIHASG--------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSET 706
L +I+ + V Q P +I DN+ +G K +
Sbjct: 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWA 127
Query: 707 LKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
LK L ++ + + + LSGGQ+ RL +AR + D+ ++D+ SA+D
Sbjct: 128 LKKAALWDEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP 180
Query: 767 QVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
I +M + T ++ THN+Q S
Sbjct: 181 ISTLKI--EDLMVELKKEYTIVIVTHNMQQAS 210
|
Length = 251 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 53/277 (19%), Positives = 112/277 (40%), Gaps = 49/277 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------IAY 676
++ +S +P G + ++G G+GK++ ILG + T G I +G I Y
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76
Query: 677 VPQVPWILSG-TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+P+ + T+ D + + K + L+A ++I +K
Sbjct: 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-------GKKTKKIK 129
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LS G + ++ AV H ++ +LD+ S +D V +L +AI T I +H
Sbjct: 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFSSH 188
Query: 793 NVQAISA-ADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 851
++ + D ++++ KGQ T L+ +++R S
Sbjct: 189 RMEHVEELCDRLLMLKKGQ-------------------------TVLYGTVEDIR--RSF 221
Query: 852 ANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTV 888
K+++++ + + I+++ + K+G + +
Sbjct: 222 GKKRLVIESDLSLEELANIPGILKITETKDGSWRIQI 258
|
Length = 300 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 55/232 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-------LGEMMLTHGSIHASGSIA 675
VL+ + L + +G +V +IG GSGKS+LL I G++++ + +
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV--DGLKVNDPKV 70
Query: 676 YV-----------------PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
P + T +N++FG P K L
Sbjct: 71 DERLIRQEAGMVFQQFYLFPHL------TALENVMFG----PLRVRGASKEEAEKQAREL 120
Query: 719 M--VG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ----VA 769
+ VG + A Y E LSGGQ+ R+A+ARA+ + + D+ SA+D + V
Sbjct: 121 LAKVGLAERAHHYPSE----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL 176
Query: 770 RWILSNAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ + A G M ++ TH + A A ++ +DKG++ G L
Sbjct: 177 KVMQDLAEEGMTM-----VIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
Length = 240 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGSIAY----- 676
L +++L + + + A+IG G GKS+ L ++ L + G + G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 677 ----------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGDM 724
V Q P +I DN+ +G P+++ K LD V+ SL
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYG----PRTHGIKDKK-KLDEIVEKSL----KG 129
Query: 725 AYIGEK--------GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI 772
A + ++ + LSGGQ+ RL +ARA+ ++ ++D+ SA+D ++ I
Sbjct: 130 AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI 189
Query: 773 LSNAIMGPHMLQK--TRILCTHNVQ 795
L+K T ++ THN+Q
Sbjct: 190 QE--------LKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 25/203 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------HASG 672
+V++ +S + +G ++G G+GK++ L +LG GSI HA
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80
Query: 673 SIAYVPQV----PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+ VPQ P T+R+N+L Y S + ++ + + A +G
Sbjct: 81 RVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVG 137
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
E LSGG + RL LARA+ + D+ +LD+ + +D Q AR ++ + KT +
Sbjct: 138 E----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTIL 192
Query: 789 LCTHNV-QAISAADMVVVMDKGQ 810
L TH + +A D + V+++G+
Sbjct: 193 LTTHFMEEAERLCDRLCVIEEGR 215
|
Length = 306 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSIL---------GEMMLTHGSIHASGS- 673
L ++L + K + A IG G GKS+LL N + GE++L +I
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 674 -------IAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLD--VDISLMVGGD 723
+ V Q P +I DNI FG + ++ S +E +D V+ +L
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAE------MDERVEWALTKAAL 142
Query: 724 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ +K G +LSGGQ+ RL +AR + ++ +LD+ SA+D
Sbjct: 143 WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHASG- 672
VL +++ P+ + A+IG G GKS+LL N I+ G ++L + +I++
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 673 -------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGD 723
+ V Q P +I DN+ FG P+ T ++ LD V+ SL
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFG----PRMLGTTAQS-RLDEVVEKSLRQAAL 133
Query: 724 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
+ + G+ LSGGQ+ RL +AR + ++ ++D+ SA+D I +M
Sbjct: 134 WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI--EELMQ 191
Query: 780 PHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
T + THN+ QA A+D + G + G + ++
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 30/228 (13%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L+DI+ I G V ++G +G+GK+++L + L G I G ++ RD +
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMN--DDLKI-WSVLE----------KCHVKEEVEAVG 1315
F V Q LF HM D++ +VL K V + +E V
Sbjct: 78 F--VFQHYALFR----------HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ 125
Query: 1316 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AISSE 1372
L S GQ+Q + LARAL ++L LDE +DAQ L+ + E
Sbjct: 126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185
Query: 1373 CKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF 1419
K T + + H + + D ++++ G++ + G P + ++ + F
Sbjct: 186 LK-FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SIAYV 677
+S +PKG +V +G G+GKS+ L + G ++ T G + +G SI V
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 678 ----PQVPWILSGTIRDNILFGK---NYDPQSYSETLKACT--LDVDISLMVGGDMAYIG 728
Q+ W L D++ K ++E L T LD++ L
Sbjct: 103 MGQKLQLWWDLP--ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-------- 152
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTR 787
LS GQR R LA A+ H + LD+ +D A+ + + + Q T
Sbjct: 153 -PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV-NAQANIREFLKEYNEERQATV 210
Query: 788 ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
+L TH I+ D V+++D+GQ+ + G+ A L
Sbjct: 211 LLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
|
Length = 325 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHA 670
+N L ++L +P + A+IG G GKS+LL I G++ + I+
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 671 SGSIA-------YVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVD 715
+ +A V Q P +I +N+ +G K + +L+ L +
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+ + LSGGQ+ RL +AR + D+ ++D+ SA+D I
Sbjct: 135 VK-------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI--E 185
Query: 776 AIMGPHMLQKTRILCTHNVQ 795
+M T ++ TH++Q
Sbjct: 186 ELMEELKKNYTIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLR 1266
AL ++N + + ++G GAGKS++L LF + G IL G I + L
Sbjct: 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE 72
Query: 1267 GRFAVVPQSPFLF-EGSLRDNL------------DPFHMNDDLKIWSVLEKCHVKEEVEA 1313
++V Q L + S+ DN+ D M D K +
Sbjct: 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----------TKAIFDE 121
Query: 1314 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-E 1372
+ ++ + + SV Q Q+I +A+A ++K++ +DE T+++ + + L I +
Sbjct: 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181
Query: 1373 CKGMTVITIAHRISTVLNM-DEILILDHGHLV 1403
+G ++ I+H++ + + DEI IL G +
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPIC-GGQILVDGLNIINTPVRDLR 1266
L+ + G + ++G +G+GKS++LNAL R+ G IL + P + +
Sbjct: 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN----RKPTKQIL 139
Query: 1267 GRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA-VGL----ETFV 1320
R V Q L+ ++R+ L + K + EK V E V + +GL T +
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTII 199
Query: 1321 KESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKGMTV 1378
S I S G+R+ + +A +L + +L LDE T+ +DA A ++ S KG T+
Sbjct: 200 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTI 259
Query: 1379 ITIAHRIST-VLNM-DEILILDHG 1400
+T H+ S+ V M D +L+L G
Sbjct: 260 VTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 45/216 (20%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSL---LNSIL----GEMML--------THGSIH 669
L ++ KG +VA++G G+GKS+L N IL GE+++ +
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75
Query: 670 ASGSIAYVPQVP--WILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMV 720
++ V Q P + + T+ +++ FG K + E LKA V
Sbjct: 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKA----------V 125
Query: 721 GGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
G M K + LSGGQ+ R+A+A + +I +LD+ S +D A I+
Sbjct: 126 G--MEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL--- 180
Query: 780 PHMLQK---TRILCTHNVQAISA-ADMVVVMDKGQV 811
+ L K T I+ TH+V + AD V VM G++
Sbjct: 181 -YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 39/236 (16%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 669
WY N + VL+ ++L + + + A IG G GKS+ L ++ L E G I+
Sbjct: 89 WYMNRTKH---VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145
Query: 670 ASGS---------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
G+ I V Q P +I DN+ +G + + + L+
Sbjct: 146 FLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKS 205
Query: 715 DISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVA 769
S + ++ +K N LSGGQ+ RL +ARA+ ++ ++D+ SA+D A++
Sbjct: 206 LKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIE 265
Query: 770 RWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAV 822
IL L+K + I+ TH++ QA +D V +G ++ G + + +
Sbjct: 266 ELILE--------LKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313
|
Length = 329 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 49/210 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSILGEMMLTHGSIHASGSIAY 676
+ L + L + + A+IG G GKS+ L N ++ + +T G++ G Y
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT-GNVSLRGQNIY 75
Query: 677 VP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLD 713
P Q P +I +N+++G K ++ +LK +
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 773
++ ++ E ++LSGGQ+ R+ +AR + D+ +LD+ SA+D I
Sbjct: 136 DEVK-------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP-----IS 183
Query: 774 SNAIMGPHML-----QKTRILCTHNVQAIS 798
S I +ML Q T IL TH++ S
Sbjct: 184 STQI--ENMLLELRDQYTIILVTHSMHQAS 211
|
Length = 252 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASGSIAYVP 678
++ +S L G + V G G GK++LL + G + G + A
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 679 QVPWI--LSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ ++ L G + +N+ F ++ ++ +L G +
Sbjct: 74 NILYLGHLPGLKPELSALENLHF--------WAAIHGGAQRTIEDALAAVGLTGFEDLPA 125
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--TRIL 789
LS GQ+ RLALAR + +++LD+ +A+D L ++ H L + +L
Sbjct: 126 AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVA--LLAGLLRAH-LARGGIVLL 182
Query: 790 CTH 792
TH
Sbjct: 183 TTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 30/198 (15%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSIHA 670
+N + VS+ P+ S+ A+IG G GKS++L SI G+++L I+
Sbjct: 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75
Query: 671 SGS--------IAYVPQVPWILSG-TIRDNILFGKNYD---PQSYS-ETLKACTLDVDIS 717
G + V Q P +I DN++ G + +S + E +++ V +
Sbjct: 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALW 135
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
V + + LSGGQ+ RL +AR + ++ ++D+ SA+D I +
Sbjct: 136 DEVKDRLK---SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI--EEL 190
Query: 778 MGPHMLQKTRILCTHNVQ 795
+ + T I+ THN+Q
Sbjct: 191 IEELKEKYTIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 22/162 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------IAYVPQ 679
+L Q+S LP G L+ + G G+GK++LL I G + G I Y Q
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 680 VPWI--LSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+ ++ SG T+R+N L YD + L SL I
Sbjct: 76 LCFVGHRSGINPYLTLRENCL----YDIHFSPGAVGITELCRLFSL-----EHLIDYPCG 126
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
LS GQ+ ++AL R + +++LD+ L A+D I++
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT 168
|
Length = 200 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 50/204 (24%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT------HGSIHASGSIAYVPQV 680
L V L +P+ ++ A IG G GKS+ L L M T G I G Y P++
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRC-LNRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 681 ---------------PWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGG- 722
P +I +N+ +G P+ + LD V+ SL G
Sbjct: 94 DVVELRARVGMVFQKPNPFPKSIYENVAYG----PRIHGLARSKAELDEIVETSLRKAGL 149
Query: 723 -----DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWIL 773
D + E G LSGGQ+ RL +ARA+ ++ ++D+ SA+D A+V I
Sbjct: 150 WEEVKDR--LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI- 206
Query: 774 SNAIMGPHMLQK--TRILCTHNVQ 795
L++ T ++ TH++Q
Sbjct: 207 -------DELRQNYTIVIVTHSMQ 223
|
Length = 267 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 32/202 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLN----------SILGEMMLTHGSIHA----S 671
+L V+ + KG +V ++G G GKS+LL+ S GE+ L +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 672 GSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLK--ACTLDVDISLMVGGDMAYIG 728
I + Q + ++ N+LF + TLK A + +L G
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLF-------ALPATLKGNARRNAANAALERSGLDGAFH 129
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPHMLQ 784
+ LSGGQRAR+AL RA+ +LD+ S +D Q +W+ S
Sbjct: 130 QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV----RAAG 185
Query: 785 KTRILCTHNVQAISAADMVVVM 806
+ TH++Q + A V+ M
Sbjct: 186 IPTVQVTHDLQDVPAGSRVIEM 207
|
Length = 213 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 4e-05
Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 55/252 (21%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1247
Q L+ + +T Y P D++F + G +GIVG +G+GK+++LNAL RL P G
Sbjct: 4 QPLLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG 61
Query: 1248 -------GQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1299
L D + R L R + V Q P RD L
Sbjct: 62 EVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP-------RDGLRM---------- 104
Query: 1300 SVLEKCHVKEEVEAVGLETF--VKESGI------------------SFSVGQRQLICLAR 1339
V ++ E + AVG + ++ + +FS G +Q + +AR
Sbjct: 105 QVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164
Query: 1340 ALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRISTV-LNMDEI 1394
L+ +++ +DE T +D A+ +L+ + G+ V+ + H ++ L +
Sbjct: 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAHRL 222
Query: 1395 LILDHGHLVEQG 1406
L++ G +VE G
Sbjct: 223 LVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 34/224 (15%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF--RLTPICGGQILVDGLNIINTPV--RD 1264
L +N T++ G I+G G+GKS++ + + G IL G +++ R
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75
Query: 1265 LRGRFAVVPQSP----------FL-------FEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1307
G F + Q P FL + LD LK + L +
Sbjct: 76 RAGLF-LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK--AKLALLGM 132
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA--NVDA-QTASI 1364
EE L V E FS G+++ + + L K+ LDE + ++DA + +
Sbjct: 133 DEEF----LNRSVNE---GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 1365 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1408
N + + +IT R+ + D + +L G +V+ G+
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
V+N +S + G ++G G+GKS++ ILG G I G
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114
Query: 674 -IAYVPQVPWI-LSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I VPQ + L T+R+N+L FG+ + + ++ I ++ + A + K
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYF-------GMSTREIEAVIPSLL--EFARLESK 165
Query: 731 G----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+LSGG + RL LARA+ + + +LD+ + +D AR ++ + KT
Sbjct: 166 ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKT 224
Query: 787 RILCTHNV-QAISAADMVVVMDKG 809
+L TH + +A D + V++ G
Sbjct: 225 ILLTTHFMEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 52/228 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL------------NSILGEMMLTHGS------- 667
L +++ + + + A+IG G GKS+ L N GE++L +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 668 ---IHASGSIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDI 716
I I+ V Q P +I +N+ +G ++ + L+ L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 717 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI 772
+G D+A+ NLSGGQ+ RL +ARA+ +I + D+ SA+D A + I
Sbjct: 152 KDRLG-DLAF------NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI 204
Query: 773 --LSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSS 817
L N + T ++ THN+ QA +D M G++ G++
Sbjct: 205 SDLKNKV--------TILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244
|
Length = 265 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 38/195 (19%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASG----- 672
V+L + S+ A IG G GKS++L + + GE++L ++ G
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM---- 724
+I V Q P + +IRDN++ G + + L V+ SL G ++
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL---VEKSL-RGANLWNEV 138
Query: 725 -AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI---MGP 780
+ + G LSGGQ+ RL +ARA+ D+ ++D+ SA+D I + AI +
Sbjct: 139 KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP-----ISTLAIEDLINE 193
Query: 781 HMLQKTRILCTHNVQ 795
T ++ THN+Q
Sbjct: 194 LKQDYTIVIVTHNMQ 208
|
Length = 258 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 48/214 (22%), Positives = 85/214 (39%), Gaps = 32/214 (14%)
Query: 1219 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1278
G + +VG GAGKS++L + +T G I G + +L A + Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQ---- 79
Query: 1279 FEGSLRDNLDPFHMNDDLKIWSVLE-KCHVKEEVEAV-------GLETFVKESGISFSVG 1330
PF M +W L K E + L+ + S S G
Sbjct: 80 ------QQTPPFAM----PVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 1331 QRQLICLARALLK-------SSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIA 1382
+ Q + LA +L+ + ++L LDE ++D S L +S+ C+ G+ ++ +
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 1383 HRIS-TVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
H ++ T+ + +L G L+ G + +L
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 38/226 (16%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMMLTHGSIHASG-- 672
L+ +SL + L A+IG G GKS+ L I GE+ +I+ S
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDISL 718
+ V Q P ++ DN+ +G K Q E+LK + +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK- 138
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
+ SGGQ+ R+ +ARA+ + +LD+ SA+D + I +
Sbjct: 139 ------DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 779 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVS 823
H Q T I+ THN+ QA +D + G + G + ++ ++
Sbjct: 193 LKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG--EMMLTHGSIHASG---------SIA 675
LN +S + G+L A++GE G+GK++LL+ + G + G I +G S
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82
Query: 676 YVPQVPWILSG--TIRDNILF 694
YV Q + S T+R+ + F
Sbjct: 83 YVEQQD-VHSPNLTVREALRF 102
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--GSIAYVPQ 679
+ + ++L L G +A+IGE G GK++LL +++GE+ G++ S +I Y Q
Sbjct: 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQ 389
|
Length = 530 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 1212 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF-A 1270
++F ++ G + + G GAGK+++L L L + GQI +DG T R R RF A
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG----KTATRGDRSRFMA 85
Query: 1271 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE----EVEAVGL----ETFVKE 1322
+ P L+ +L ++L L K+ + VGL +T V++
Sbjct: 86 YLGHLP-----GLKADLSTL---ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQ 137
Query: 1323 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1380
S GQ++ + LAR L + + LDE AN+D + +++ IS+ + G ++T
Sbjct: 138 ----LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVT 193
|
Length = 214 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-05
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 52/224 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSS-------LLNSILGEMMLTHGSIHASGSIA 675
NVV+ +S L G + ++GE GSGKS+ L+NS GE+ +H
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-QGEIWFDGQPLHNLNRRQ 356
Query: 676 YVPQVPWILSGTIRDNILFGKNYDPQS------------------YSETLKACTLDVD-I 716
+P I ++F DP S + TL A + I
Sbjct: 357 LLPVRHRI-------QVVF---QDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406
Query: 717 SLM--VGGDMA----YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
++M VG D Y E SGGQR R+A+ARA+ + +LD+ S++D V
Sbjct: 407 AVMEEVGLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462
Query: 771 WILS--NAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811
IL+ ++ H L + +H++ + A V+V+ +G+V
Sbjct: 463 QILALLKSLQQKHQL--AYLFISHDLHVVRALCHQVIVLRQGEV 504
|
Length = 529 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-05
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
VS L G ++ ++GE GSGK++LLN++ + G +H
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS--NAIMGPHMLQKTRILCTH 792
SGGQR R+A+ARA+ ++ +LD+ SA+D V +L + H L + + +H
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL--SYLFISH 485
Query: 793 NVQAISA-ADMVVVMDKGQVKWIGSSADL 820
++ + A V+VM G++ G + +
Sbjct: 486 DLAVVRALCHRVIVMRDGKIVEQGPTEAV 514
|
Length = 534 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMM 662
WY Q+ L ++L +P+ + A+IG G GKS+ + + + GEM
Sbjct: 21 WY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75
Query: 663 LTHGSIHAS--------GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD- 713
+I +I V Q +I DN+ +G P+ + K +
Sbjct: 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG----PRIHGTKNKKKLQEI 131
Query: 714 VDISLMVGGDMAYIGE-------KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
V+ SL D+A E + ++LSGGQ+ RL +ARA+ D+ ++D+ SA+D
Sbjct: 132 VEKSLK---DVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP 188
Query: 767 QVARWILSNAIMGPHMLQKTRILCTHNVQ 795
R I ++ + T ++ THN+Q
Sbjct: 189 VSTRKI--EELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
EEQ VL +SL + G +VA++G GSGKS+L+N ILG
Sbjct: 18 EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILG 55
|
Length = 648 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 57/221 (25%)
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASGS------------ 673
V+L LP + A+ G G+GK+SL+N+I G LT G I +G
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISG---LTRPQKGRIVLNGRVLFDAEKGICLP 72
Query: 674 -----IAYVPQ----VPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGD 723
I YV Q P +R N+ +G + I ++G +
Sbjct: 73 PEKRRIGYVFQDARLFPHY---KVRGNLRYGMAKSMVAQFD----------KIVALLGIE 119
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI------LSNAI 777
+ +LSGG++ R+A+ RA+ ++ ++D+ L+++D R + L+ I
Sbjct: 120 -PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 778 MGPHMLQKTRIL-CTHNVQAI-SAADMVVVMDKGQVKWIGS 816
IL +H++ I AD VVV+++G+VK G
Sbjct: 179 -------NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 1224 IVGRTGAGKSSILNALFRLT-PICG-----GQILVDGLNIINTPVRDLRGRFAVVPQSPF 1277
I GR+GAGK+S++NA+ LT P G G++L D I P + R V Q
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE--KRRIGYVFQDAR 86
Query: 1278 LF-----EGSLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSV 1329
LF G+LR + M D + V +G+E + S S
Sbjct: 87 LFPHYKVRGNLRYGMAKS-MVAQFDKI--------------VALLGIEPLLDRYPGSLSG 131
Query: 1330 GQRQLICLARALLKSSKVLCLDECTANVD 1358
G++Q + + RALL + ++L +DE A++D
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK------- 785
LSGGQ+ R+A+ARA+ + + D+ SA+D R IL +L+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-------LLKDINRELGL 192
Query: 786 TRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSAD 819
T +L TH + + D V V+D G++ G+ ++
Sbjct: 193 TIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAY 676
E + +S + G +A++GE GSGKS SILG +L + H SGSI +
Sbjct: 19 EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG--LLPSPAAAHPSGSILF 74
|
Length = 534 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 2e-04
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 676
+L +++ +P S+ ++G GSGKS+LL + + + I G + Y
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 677 ----------VPQVPWILSG-TIRDNILFG-KNY---DPQSYSETLKACTLDVDISLMVG 721
V Q P +I DNI + K++ + + + ++ C V + V
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV- 143
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+ LSGGQ+ RL +ARA+ + ++D+ S +D ++ I ++
Sbjct: 144 --YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI--EKLITEL 199
Query: 782 MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823
+ ++ +HN Q ++ AD V + G++ GSS ++ S
Sbjct: 200 KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 687 TIRDNILFGKNYDPQSYSETLK-ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
TI +I+FG P S + + A +VG D +Y+ LSGGQ+ R+ALA
Sbjct: 122 TIEKDIIFG----PVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA 177
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVV 804
+ D + D+ + +D Q + IL + KT IL TH++ + +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 805 VMDKGQV 811
G++
Sbjct: 237 FFKDGKI 243
|
Length = 305 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 24/200 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMMLTHGSIHASGSIAYVPQ 679
L + L + +G +V ++GE G GKS+L GE++L ++ A Y
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD- 416
Query: 680 VPWILSGTIRDNILF--------GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ S D LF G++ + + L+ + + + GG
Sbjct: 417 ---LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGG-----FSTT 468
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
LS GQ+ RLAL A I + D+ + D R+ + KT I+ +
Sbjct: 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS 528
Query: 792 HNVQAISAADMVVVMDKGQV 811
H+ Q AD ++ + G +
Sbjct: 529 HDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 34/221 (15%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASG-- 672
LN +++ + K S+ A+IG G GKS+ L + I G ++ +I+++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGDM 724
I V Q P +I DNI +G P+ + K LD V+ SL
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYG----PKIHGTKDKK-KLDEIVEQSLKKSALW 137
Query: 725 AYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ +K ++LSGGQ+ RL +AR + ++ ++D+ SA+D ++ + I+
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP-ISTGKIEELIINL 196
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
T I+ THN+ QA +D G ++ S+ +L
Sbjct: 197 KE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 35/226 (15%)
Query: 613 CSWYCNNEEEQNV---VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
C C +E +V VL+ VS + +G ++A++G GSGKS+LL+ +LG +
Sbjct: 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGL-----DTP 61
Query: 670 ASGSIAYVPQVPWILSGTIR---DNILFGKNYDPQSYSETLKACTLDVDISLMVGGD--- 723
SG + + Q LS + N G Y A +V + L++G
Sbjct: 62 TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALE-NVAMPLLIGKKKPA 120
Query: 724 ---------MAYIG-EKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
+A +G E N LSGG+R R+A+ARA+ + + + D+ +DA+
Sbjct: 121 EINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180
Query: 769 ARWILSNAIMGP-HMLQKTRIL-CTHNVQAISAADMVVVMDKGQVK 812
A I ++G + LQ T L TH++Q + M G++
Sbjct: 181 ADSIF--QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT 224
|
Length = 233 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VLN VSL L G VA++G G GKS+L ++G + G++ G
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 673 -----------SIAYV-PQ--VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
SI+ V P+ V I+ +R + K SE L+A LD +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
LSGGQ R+ LARA+ + +LD+ +S +D + ++
Sbjct: 147 KRPP----------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR---- 192
Query: 779 GPHMLQKTR-------ILCTHNVQAISA-ADMVVVMDKGQV 811
+L+K + + TH+++ + V+VMD GQ+
Sbjct: 193 ---LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 48/235 (20%), Positives = 100/235 (42%), Gaps = 35/235 (14%)
Query: 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252
E +NVT R + + DI+F++ G +G G G+G++ ++N LF + GG+I +
Sbjct: 267 EVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
Query: 1253 DGLNI-INTPVRDLRGRFAVVPQS-------------------PFLFEGSLRDNLDPFHM 1292
+G +I +P+ ++ A + +S L +G + + FH
Sbjct: 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE 382
Query: 1293 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLD 1351
D+ + + + E + L+ I+ S G +Q + +++ L +V+ D
Sbjct: 383 VDEQRT--------AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
Query: 1352 ECTANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1404
E T +D A I + G ++ ++ + ++ + D I + G L +
Sbjct: 435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 64/225 (28%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+L V L + +G VA++G GSGKS+LL + G + G + G
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 673 ----SIAYVPQ---------------VPWILSGTIRDNILFGKNYDPQSYS-ETLKACTL 712
+ +V Q +P L G D ++ + L+A L
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA--------DSRAGAKALLEAVGL 136
Query: 713 DVDISLMVGGDMA-YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 771
G + Y + LSGG++ R+ALARA D+ D+ +D
Sbjct: 137 --------GKRLTHYPAQ----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184
Query: 772 ILS-----NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
I N G T +L TH+ Q + D + + G++
Sbjct: 185 IADLLFALNRERG-----TTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTR 787
++LSGGQ+ R+A+ARA+ + + D+ +A+D AQ+ I A G T+
Sbjct: 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG-----ITQ 194
Query: 788 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSA 818
++ TH V+ A A VV M+ G + G ++
Sbjct: 195 VIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 43/189 (22%)
Query: 641 AVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------------------IAYVPQ 679
A+IG G GKS+ L +I M S H +G+ I V Q
Sbjct: 69 AIIGPSGCGKSTFLRAI-NRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127
Query: 680 VPWILSGTIRDNILFGKNY----DPQSYSE----TLKACTLDVDISLMVGGDMAYIGEKG 731
P +I DNI +G D + E +L+ L ++S + +
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNA 180
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LSNAIMGPHMLQKTRIL 789
+ LSGGQ+ RL +AR + +I +LD+ SA+D + I L + G + T ++
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY----TIMI 236
Query: 790 CTHNVQAIS 798
THN+Q S
Sbjct: 237 VTHNMQQAS 245
|
Length = 286 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 37/226 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSI----- 668
VL+QVS+ P ++ +++G GSGK++ L ++ G+++L SI
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 669 --HASGSIAYVPQVPWILSGTIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGG 722
+ + Q P +I DN+L G K + + +A +V + V
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIM 778
++ + LSGGQ+ L LAR + ++ +LD+ SA+D ++ +I S A
Sbjct: 156 RLS---DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD- 211
Query: 779 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVS 823
+ T I+ THN+ QA +D + G++ G + L S
Sbjct: 212 -----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 47/201 (23%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF--RLTPICGGQILVDGLNIINTPVRDLR 1266
L++I+ ++ GT ++G +GAGK+++L+ L + + G+IL++G + ++ +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL----DKNFQ 78
Query: 1267 GRFAVVPQSPFLFEGS-LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1325
V Q +R+ L F L+ GL
Sbjct: 79 RSTGYVEQQDVHSPNLTVREALR-FSAL--LR-----------------GL--------- 109
Query: 1326 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA----SILQNAISSECKGMTVITI 1381
SV QR+ + + L +L LDE T+ +D+Q A L+ S G ++
Sbjct: 110 --SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS---GQAILCT 164
Query: 1382 AHRISTVL--NMDEILILDHG 1400
H+ S + D +L+L G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-04
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---------VPWILSG 686
G ++ ++G G GK++ + + G + GS ++Y PQ V +L
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-EDLKVSYKPQYISPDYDGTVEDLLRS 424
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQRARLALA 745
IR +E +K L+ + E+ V LSGG+ R+A+A
Sbjct: 425 AIRSAFG-----SSYFKTEIVKPLNLE------------DLLERPVDELSGGELQRVAIA 467
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
A+ +D+Y+LD+ + +D + R I++ I
Sbjct: 468 AALSREADLYLLDEPSAYLDVE-QRIIVAKVI 498
|
Length = 591 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 44/217 (20%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY---------- 676
+N +S+ + K ++ A+IG G GKS+ L SI M S + G I Y
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSI-NRMNDLIPSARSEGEILYEGLNILDSNI 95
Query: 677 -----------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGD 723
V Q P +I +NI Y E K+ LD V+ SL
Sbjct: 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYA----GERRKS-VLDEIVEESLTKAAL 150
Query: 724 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA--- 776
+ ++ ++LSGGQ+ RL +AR + + +LD+ SA+D +SNA
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP------ISNAKIE 204
Query: 777 -IMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 811
++ + + I+ THN+ QA+ +D G +
Sbjct: 205 ELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241
|
Length = 268 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-04
Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 1192 IEFQNVTMRYK----PS--------------LPAALHDINFTIEGGTQVGIVGRTGAGKS 1233
++F++VT +YK P AL++I+F + G VGI+G G+GKS
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 1234 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN 1293
++ N L+ G+ + N D++G A++ S L L N
Sbjct: 65 TLSN-------------LIAGVTMPNKGTVDIKGSAALIAIS-----SGLNGQLTGIE-N 105
Query: 1294 DDLK-IWSVLEKCHVKE----EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348
+LK + L K +KE +E + F+ + ++S G + + A ++ + +L
Sbjct: 106 IELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDIL 165
Query: 1349 CLDECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+DE + D T L + +G T+ I+H +S V + + L L +G + E G
Sbjct: 166 VIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYG 225
Query: 1407 N 1407
+
Sbjct: 226 D 226
|
Length = 549 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 1223 GIVGRTGAGKSSILNALFR--LTPI------------CGGQILVDGLNIINTPVRDLRGR 1268
G++G+TGAGKSS+ NALF + + Q DGL +++ P RGR
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERGR 60
Query: 1269 F 1269
Sbjct: 61 R 61
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-04
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 31/202 (15%)
Query: 1219 GTQVGIVGRTGAGKSSILNALF-RLTP--ICGGQILVDGLNIINTPVR--------DLRG 1267
GT ++G +GAGK+++LN L R+T I GG LV+G + ++ R DL
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHL 848
Query: 1268 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETF----VKE 1322
+ V +S F LR P + S EK EEV + + +E++ V
Sbjct: 849 PTSTVRES-LRFSAYLRQ---PKSV-------SKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 1323 SGISFSVGQRQLICLARALLKSSKVLC-LDECTANVDAQTA-SILQNAISSECKGMTVIT 1380
G +V QR+ + + L+ K+L LDE T+ +D+QTA SI + G ++
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957
Query: 1381 IAHRISTVL--NMDEILILDHG 1400
H+ S +L D +L+L G
Sbjct: 958 TIHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
++ + L+ +SL +G ++ ++G GSGKS+L N I G + T G + +G ++ V
Sbjct: 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVS-V 89
Query: 678 PQVPWILSGTIR--DNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+ LSG + +NI F + + +KA T + I G+ Y K
Sbjct: 90 IAISAGLSGQLTGIENIEFKMLCMGFKRKE----IKAMTPKI-IEFSELGEFIYQPVK-- 142
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
S G RA+L + + DI ++D+ LS D A+ L + I KT +H
Sbjct: 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFVSH 201
Query: 793 NVQAI 797
N+ +
Sbjct: 202 NLGQV 206
|
Length = 264 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
VS L G ++ ++GE GSGK++LL I G + G++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
|
Length = 258 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 24/204 (11%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSL---LNSIL----GEMMLTHGSIHASG------- 672
L +++ + KG + A++G G+GKS+L LN IL G ++ I S
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 673 -SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
S+ V Q P + S ++ ++ FG + VD +L G + ++ +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG----AVNLKLPEDEVRKRVDNALKRTG-IEHLKD 136
Query: 730 KGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
K + LS GQ+ R+A+A + + +LD+ + +D I+ + L T I
Sbjct: 137 KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTII 196
Query: 789 LCTHNVQAISA-ADMVVVMDKGQV 811
+ TH++ + D V VM +G+V
Sbjct: 197 IATHDIDIVPLYCDNVFVMKEGRV 220
|
Length = 283 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1221 QVGIVGRTGAGKSSILNALFR 1241
+V +VGR GKS+++NAL
Sbjct: 1 RVALVGRPNVGKSTLINALTG 21
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 49/181 (27%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 693
+GSL + G GSGKS++L++I L G +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIG-----------------------LALGGA-QSATR 53
Query: 694 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV----Y 749
+ ++ LSGG++ ALA +
Sbjct: 54 RRSGVKAGCIV-----AAVSAELIFTRLQ-----------LSGGEKELSALALILALASL 97
Query: 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNVQAISAADMVVVMD 807
+Y+LD++ +D + + L+ AI+ L K I+ TH + AD ++ +
Sbjct: 98 KPRPLYILDEIDRGLDPRDGQ-ALAEAIL--EHLVKGAQVIVITHLPELAELADKLIHIK 154
Query: 808 K 808
K
Sbjct: 155 K 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 36/200 (18%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL--------GEMMLTHGSIHA-- 670
E + +L V L + +G +A+IGE GSGKS+LL +IL GE+ L +H
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHQMD 78
Query: 671 --------SGSIAYVPQVPWILSGTI--RDNI-----LFGKNYDPQSYSETLKACTLDVD 715
+ + +V Q ++L T+ +N+ L G++ QS +
Sbjct: 79 EEARAKLRAKHVGFVFQ-SFMLIPTLNALENVELPALLRGES-SRQSRNGAKALLE---- 132
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
L +G + ++ + LSGG++ R+ALARA D+ D+ +D Q I
Sbjct: 133 -QLGLGKRLDHLPAQ---LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 776 AIMGPHMLQKTRILCTHNVQ 795
T IL TH++Q
Sbjct: 189 LFSLNREHGTTLILVTHDLQ 208
|
Length = 228 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 31/218 (14%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSILGEMMLTHGSIHASG----------- 672
L +++ + + + A+IG G GKS+ L N + ++ G + G
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 673 --SIAYVPQVPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGD 723
++ V Q P + +I +NI + KN D + + C V + V
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEE--ALVVDCLQKVGLFEEVKDK 135
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ + + LSGGQ+ RL +ARA+ + +LD+ SA+D + I H L
Sbjct: 136 LK---QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192
Query: 784 QKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+ I+ THN+ Q AD G++ G S +
Sbjct: 193 --SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228
|
Length = 246 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 32/164 (19%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------------NSILGEMMLTHGSIHA-S 671
+L+ +SL P G + +IG GSGKS+LL +L L S A +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84
Query: 672 GSIAYVP-QVPWILSGTIRDNILFGK--------NYDPQSYSETLKACTLDVDISLMVGG 722
+AY+P Q+P T+R+ + G+ + + +A +L VG
Sbjct: 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISL-------VG- 136
Query: 723 DMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ + + V+ LSGG+R R +A V S +LD+ SA+D
Sbjct: 137 -LKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRI- 788
LSGGQ+ R+A+ARA+ + + D+ +A+D AQ+ I L +T I
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII--------RELAETGIT 193
Query: 789 --LCTHNVQ-AISAADMVVVMDKGQV 811
+ TH V+ A A VV M+ G +
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 51/227 (22%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI----H--ASGSIAYVPQVPWI 683
+S L +G +A+IGE GSGKS+L + G + T G + H G +Y Q
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQ---- 87
Query: 684 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG-EKGVN--------- 733
R ++F DP + + + +D L + D+ EK +
Sbjct: 88 -----RIRMIF---QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139
Query: 734 ----------LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
L+ GQ+ RL LARA+ + + D+ L+++D + R L N ++ L
Sbjct: 140 PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM-RSQLINLML---EL 195
Query: 784 QKTR----ILCTHNV---QAISAADMVVVMDKGQVKWIGSSADLAVS 823
Q+ + I T ++ + IS D V+VM +G+V GS+AD+ S
Sbjct: 196 QEKQGISYIYVTQHLGMMKHIS--DQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 50/184 (27%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI 674
WY + +N+ L+ + + + A+IG G GKS+ + + L M+ S+ +G I
Sbjct: 33 WYGEDHALKNINLD-----IHENEVTAIIGPSGCGKSTYIKT-LNRMVELVPSVKTTGKI 86
Query: 675 AY---------------------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713
Y V Q P +I DN+ +G P+ + K TLD
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYG----PKIHGIKDKK-TLD 141
Query: 714 --VDISLMVGG----------DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 761
V+ SL D AY LSGGQ+ RL +AR + D+ ++D+
Sbjct: 142 EIVEKSLRGAAIWDELKDRLHDNAY------GLSGGQQQRLCIARCLAIEPDVILMDEPT 195
Query: 762 SAVD 765
SA+D
Sbjct: 196 SALD 199
|
Length = 271 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
VG D G+ V+LSGGQ+ R+++ARA+ ++ + D+ SA+D ++ +L IM
Sbjct: 139 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQ 196
Query: 780 PHMLQ-KTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ KT ++ TH + A + V+ + +G+++ G+ L
Sbjct: 197 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 49/219 (22%), Positives = 103/219 (47%), Gaps = 20/219 (9%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SI 674
++++++ + + A +G G+GK++ L+ + G + T G++ G S+
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005
Query: 675 AYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
PQ + T+ ++ILF +S+ E L+++ L G E+ +
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA----QLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LSGG + +L++A A + + +LD+ S VD R I ++ + +T I+ TH+
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD--LLLKYRSGRTIIMSTHH 1119
Query: 794 V-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWST 831
+ +A D + ++ +G++ G+ L +GF+ T
Sbjct: 1120 MDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLT 1158
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668
VL VSL + G VA+ G G+GKS+LL S+ + G I
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI 65
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 628 NQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
VS L G ++ ++GE GSGKS+LL + G + HG+
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 44/188 (23%)
Query: 1185 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLT 1243
D P +I F + + Y P P ++NF I+ +++ +VG G GKS+IL + L
Sbjct: 502 DRPGPPIISFSDASFGY-PGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560
Query: 1244 PICG-------------GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF 1290
P G Q VDGL++ + P+ + F VP E LR +L F
Sbjct: 561 PSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP------EQKLRAHLGSF 614
Query: 1291 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1350
+ +L + + + S GQ+ + A+ K +L L
Sbjct: 615 GVTGNLAL-----------------------QPMYTLSGGQKSRVAFAKITFKKPHILLL 651
Query: 1351 DECTANVD 1358
DE + ++D
Sbjct: 652 DEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
L+AV+GE +GKS+LLN++LGE +L G + I +
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVL 40
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 32/162 (19%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------------IA 675
VS + G ++ + G VG+G++ L ++ G + G I G IA
Sbjct: 278 VSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337
Query: 676 YVP----QVPWILSGTIRDNILF--------GKNYDPQSYSETLKACTLDVDISLMVGGD 723
YVP +L +I +NI D + + + I
Sbjct: 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI------K 391
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ LSGG + ++ LAR + + +LD+ +D
Sbjct: 392 TPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433
|
Length = 500 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 671
V+ VSL + G +V ++G G+GK++ ++G + G+I A
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 672 GSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I Y+PQ I ++ DN++ +E + D LM + ++ +
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE----DRANELMEEFHIEHLRDS 133
Query: 731 -GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
G +LSGG+R R+ +ARA+ +LD+ + VD
Sbjct: 134 MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 42/211 (19%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASGSIAY 676
++ V N V+L + +G++ A+IG G GK++ L +I LT G I G Y
Sbjct: 16 DKQAVKN-VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 677 VPQVPWIL----------------SGTIRDNILFG------KNYDP--QSYSETLKACTL 712
P+V + + ++ DN++ G ++ D + +L+ L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL 134
Query: 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD-AQVARW 771
++ + LSGGQ+ RL +ARA+ +I ++D+ SA+D A AR
Sbjct: 135 WDEVK-------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTAR- 186
Query: 772 ILSNAIMGPHMLQKTRILCTHNV-QAISAAD 801
+M T I+ THN+ QA +D
Sbjct: 187 --IEDLMTDLKKVTTIIIVTHNMHQAARVSD 215
|
Length = 252 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
++ +T Y + A+ + + G G++G GAGK++ L T + G
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKE 1309
V G +I+ T + D+ PQ D +D + L +++ L +E
Sbjct: 1997 TVAGKSIL-TNISDVHQNMGYCPQF---------DAIDDLLTGREHLYLYARLRGVPAEE 2046
Query: 1310 -------EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
++++GL + ++S G ++ + A AL+ ++ LDE T +D Q
Sbjct: 2047 IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106
Query: 1363 SILQNAISSECK-GMTVITIAHRI 1385
+L N I S + G V+ +H +
Sbjct: 2107 RMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 39/219 (17%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVR-DL 1265
L + ++ G + ++G +G+GKS++L L L G++ + G L+ ++ R L
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 1266 RGR--------FAVVP--------QSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1308
R + F ++P + P L G S R + + K
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----------------RNGAK 128
Query: 1309 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
+E +GL + S G++Q + LARA VL DE T N+D QT + +
Sbjct: 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 1369 ISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQ 1405
+ S + G T+I + H + D L L +G L E+
Sbjct: 189 LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227
|
Length = 228 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.002
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 26/132 (19%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS---GTIRDNI 692
+G ++ ++G G GK++ + G + G + I+Y PQ +I GT+ D +
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ--YIKPDYDGTVEDLL 421
Query: 693 -----LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALAR 746
G +Y SE +K L+ L+ +K V LSGG+ R+A+A
Sbjct: 422 RSITDDLGSSY---YKSEIIKPLQLE---RLL---------DKNVKDLSGGELQRVAIAA 466
Query: 747 AVYHGSDIYMLD 758
+ +D+Y+LD
Sbjct: 467 CLSRDADLYLLD 478
|
Length = 590 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
+ L +S+ ++ + G G GKSSLL I G M + G+I+ P+
Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 683 I----------LSGTIRDNILF-GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
L T+ +N+ F + Y+ A TL I D+ + EK
Sbjct: 72 CTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDL--LDEKC 121
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
+LS G + +A+AR + SD+++LD+V + + + R +L+N I
Sbjct: 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE-NRDLLNNLI 166
|
Length = 195 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 1211 DINFTIEGGTQV-GIVGRTGAGKSSILNA----LFRLTPICGGQILVD 1253
DI+ + + IVG GAGKSSIL+A L+ TP G L D
Sbjct: 16 DIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDD 63
|
Length = 908 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 1189 QGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1242
+G IE +V RY +P++P D+ F+ + IVG TG+GKS++++ L R
Sbjct: 1163 KGKIEIMDVNFRYISRPNVPI-YKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217
|
Length = 1466 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILC 790
SGGQR R+A+ARA+ D+ + D+ +SA+D V +L N +M LQ+ + +
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL-NLMMD---LQQELGLSYVFI 211
Query: 791 THN---VQAISAADMVVVMDKGQVKWIGSSADL 820
+H+ V+ I AD V+VM G+ G+ +
Sbjct: 212 SHDLSVVEHI--ADEVMVMYLGRCVEKGTKEQI 242
|
Length = 327 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.003
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 29/221 (13%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASGS------ 673
++ +LN V+ G ++AV+G GSGKS+LLN++ G + + G+I A+
Sbjct: 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQI 138
Query: 674 ---IAYVPQ----VPWILSGTIRDNILFGKNYD-PQSYSETLKACTLDVDISL--MVGGD 723
+V Q P + T+R+ ++F P+S ++ K + IS + +
Sbjct: 139 LKRTGFVTQDDILYPHL---TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195
Query: 724 MAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
IG + +SGG+R R+++A + + +LD+ S +DA A ++ +
Sbjct: 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLG---SL 252
Query: 783 LQKTRILCTHNVQAISAA----DMVVVMDKGQVKWIGSSAD 819
QK + + T Q S D V+V+ +G+ + G +D
Sbjct: 253 AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD 293
|
Length = 659 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE--MMLTHGSI 668
+L V+L + KG + A++G GSGKS+L +I G +T G+I
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 50/190 (26%), Positives = 70/190 (36%), Gaps = 61/190 (32%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-----------GEMMLTHGSIHASGSIA 675
L + + +P G L V G GSGKSSL+N L E H I I
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 676 YVPQV------------PWILSG---TIRDNILF-----GKNYDPQSYSETLK----ACT 711
V + P +G IR+ LF GK Y+ ++ K A
Sbjct: 71 KVIVIDQSPIGRTPRSNPATYTGVFDEIRE--LFCEVCKGKRYNRETLEVRYKGKSIADV 128
Query: 712 LDVDI------------------SLM-VGGDMAYIGEKGVNLSGG--QRARLA--LARAV 748
LD+ + +L VG +G+ LSGG QR +LA L++
Sbjct: 129 LDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 188
Query: 749 YHGSDIYMLD 758
G +Y+LD
Sbjct: 189 -TGKTLYILD 197
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 56/293 (19%)
Query: 537 TCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGL 596
T L L L+S + + P L+ A ++ +L + + YK E
Sbjct: 271 TLLFLRTPLLSAVGALP----TLLSAQVAFNKLNKL-ALAPYKAEFP--------RPQAF 317
Query: 597 SNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 656
++ + + +++ T ++ ++ + ++L + +G L+ +IG GSGKS+L
Sbjct: 318 PDWQT----LELRNVTFAY-----QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTL--- 365
Query: 657 ILGEMMLTHGSIHASGSIAYVPQVP----------WILSGTIRDNILF-------GKNYD 699
M+LT SG I + P + S D LF GK +
Sbjct: 366 ---AMLLTGLYQPQSGEI-LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPAN 421
Query: 700 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759
P + L+ + + L G ++ + LS GQ+ RLAL A+ DI +LD+
Sbjct: 422 PALVEKWLERLKMAHKLEL-EDGRISNL-----KLSKGQKKRLALLLALAEERDILLLDE 475
Query: 760 VLSAVDAQVARWILSNAIMGPHMLQ--KTRILCTHNVQAISAADMVVVMDKGQ 810
+ D R ++ P + + KT +H+ AD ++ M GQ
Sbjct: 476 WAADQDPHFRREFYQ--VLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526
|
Length = 547 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1428 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-260 Score=2465.73 Aligned_cols=1211 Identities=42% Similarity=0.705 Sum_probs=1118.0
Q ss_pred CCCCCCCCh--hHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhH
Q 000553 202 TDSGNNQSY--WDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGY 279 (1428)
Q Consensus 202 ~~~e~~~~~--~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~ 279 (1428)
+.|.+.++. +|+++|||++|++++|||++|+.+|+|+++++++++.+.++|++.|+++.++++++|+++++++++|||
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 345555555 999999999999999999999999999999999999999999999999874434578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 280 PYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII 358 (1428)
Q Consensus 280 ~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~I 358 (1428)
+++..++++++.+...|++|.+++.+|++++++ .+.+.||+++++++++.++++++.++|+|...++|+++|+++.++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~I 281 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAI 281 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999884 6678899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000553 359 YQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWI 438 (1428)
Q Consensus 359 y~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~ 438 (1428)
|+|+|+++...+++.+.|+++|+|++|++|+.++..++|.+|.+|+|+++++|+||.++|+++++|++++++++|+|.++
T Consensus 282 Y~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~ 361 (1381)
T KOG0054|consen 282 YRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFL 361 (1381)
T ss_pred HHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 439 ANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLF 518 (1428)
Q Consensus 439 ~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1428)
+++++++|++.|+.+|+|+++|+|+|+|||+|||||||+.|.++|++.|++|++.++|..++.+++.+++.++|++++++
T Consensus 362 a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~ 441 (1381)
T KOG0054|consen 362 AKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV 441 (1381)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCc
Q 000553 519 TFGLFA-LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS 597 (1428)
Q Consensus 519 ~f~~y~-~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~ 597 (1428)
+|++|+ ..++.++++++|+++++|++|+.|+..+|+.+..++++.+|++|+++||..+|.++..... .+
T Consensus 442 tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~--~~-------- 511 (1381)
T KOG0054|consen 442 TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER--SP-------- 511 (1381)
T ss_pred HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc--CC--------
Confidence 999999 7788999999999999999999999999999999999999999999999999877632210 01
Q ss_pred cCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcCcEEEE
Q 000553 598 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677 (1428)
Q Consensus 598 ~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~~i~y~ 677 (1428)
....+.+|+++|++|+|++++++++ |+||||+|++|+++||||++||||||||++|+||+++.+|++.++|++|||
T Consensus 512 -~~~~~~~i~i~~~sfsW~~~~~~~t---L~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv 587 (1381)
T KOG0054|consen 512 -DEAGENAIEIKNGSFSWDSESPEPT---LKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYV 587 (1381)
T ss_pred -CCCCCceEEEeeeeEecCCCCCccc---ccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEe
Confidence 1234567999999999998544444 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEE
Q 000553 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 757 (1428)
Q Consensus 678 ~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illL 757 (1428)
||+|||+||||||||+||++||++||++|+++|+|++|++.||+||+|+|||+|.||||||||||+||||+|+++|||||
T Consensus 588 ~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLL 667 (1381)
T KOG0054|consen 588 PQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLL 667 (1381)
T ss_pred ccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHhccccCcccccccchh
Q 000553 758 DDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 837 (1428)
Q Consensus 758 Dep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~ 837 (1428)
|||+||||+||++|||++|+.| .+++||+|+|||+++++++||+|++|+||+|.++|+|+|+++.+..+.++..+.+.+
T Consensus 668 DDplSAVDahvg~~if~~ci~~-~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~ 746 (1381)
T KOG0054|consen 668 DDPLSAVDAHVGKHIFEECIRG-LLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESE 746 (1381)
T ss_pred cCcchhhhHhhhHHHHHHHHHh-hhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchh
Confidence 9999999999999999999977 889999999999999999999999999999999999999997665554432111111
Q ss_pred hhh--hhhhhccccc---c---hhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHhh-hhHHHHHHHHHHH
Q 000553 838 LHM--QKQEMRTNAS---S---ANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKF-SGWFITLVICLSA 908 (1428)
Q Consensus 838 ~~~--~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~-~g~~~~~~~~~~~ 908 (1428)
... .....+.... . ........++......++..+..++|+++.|.+++++|+.|+++ .|+....+++++.
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~ 826 (1381)
T KOG0054|consen 747 QEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLF 826 (1381)
T ss_pred hccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHH
Confidence 000 0000000000 0 00000000111111112245566778889999999999999998 5666677777888
Q ss_pred HHHHHHHhhhhhhhhhhhcccCCCCCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 000553 909 ILMQASRNGNDLWLSYWVDTTGSSQTK-YSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987 (1428)
Q Consensus 909 ~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~ 987 (1428)
++.+++..+.++|+++|++........ .+..+|+++|++++++..++.+++++.+..++.++|+++|++|+++++|+||
T Consensus 827 v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm 906 (1381)
T KOG0054|consen 827 VLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPM 906 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999875332221 4677999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1067 (1428)
Q Consensus 988 ~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~ 1067 (1428)
+|||+||+|||+||||+|++.+|..+|..+..++.+++.+++++++++++.|+++++++|+.++|+++++||++++||++
T Consensus 907 ~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLk 986 (1381)
T KOG0054|consen 907 SFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELK 986 (1381)
T ss_pred hhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 000553 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ----------------- 1130 (1428)
Q Consensus 1068 rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~----------------- 1130 (1428)
|+|+.+|||+|+||+|+++|+.|||||+.|++|.+++.+++|.+++++|...+++||+++|+|
T Consensus 987 RLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~ 1066 (1381)
T KOG0054|consen 987 RLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL 1066 (1381)
T ss_pred HhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc--cccCCCCCCCCCCCccEEEEEEEE
Q 000553 1131 ---------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE--LCGYQSLSPDWPFQGLIEFQNVTM 1199 (1428)
Q Consensus 1131 ---------~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~--~~~~~~~~~~wp~~g~I~f~nvs~ 1199 (1428)
+|++++|++++++.++|++++.+++|+.|+||||+.||.++|+|+ ......||++||.+|+|+|+|+++
T Consensus 1067 ~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~ 1146 (1381)
T KOG0054|consen 1067 PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSL 1146 (1381)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEE
Confidence 799999999999999999999999999999999999999998883 122233889999999999999999
Q ss_pred EECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCcccc
Q 000553 1200 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1279 (1428)
Q Consensus 1200 ~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf 1279 (1428)
||+++.|+|||||||+|+||||||||||||||||||+++|+|+.||.+|+|.|||+||+++++++||+++++|||||+||
T Consensus 1147 RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLF 1226 (1381)
T KOG0054|consen 1147 RYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLF 1226 (1381)
T ss_pred EeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCC
Q 000553 1280 EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357 (1428)
Q Consensus 1280 ~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~l 1357 (1428)
+||||+||||+++++|++||+||++|+|+++++++ |||++|.|+|.|||.||||++||||||||++|||+||||||++
T Consensus 1227 sGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsV 1306 (1381)
T KOG0054|consen 1227 SGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASV 1306 (1381)
T ss_pred cCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccC
Confidence 99999999999999999999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000553 1358 DAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1358 D~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~~ 1427 (1428)
|++||..||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++++.+
T Consensus 1307 D~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1307 DPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAA 1376 (1381)
T ss_pred ChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998887653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-210 Score=2124.00 Aligned_cols=1398 Identities=31% Similarity=0.532 Sum_probs=1163.1
Q ss_pred CccCCCCcc-ccccc------cccchhhhHHHHHHhhhHHHH-HHhhhc-ccc-cCCcccchhhHHHHHHHHHHHHHHHH
Q 000553 2 DFICPNSPF-VWDGS------TFSKCFDDMILDFATNMVTIF-IILIIG-ITQ-RSPRQNQRINLMEKVFLHILPLVGAC 71 (1428)
Q Consensus 2 ~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~ 71 (1428)
+-+|+.... +|.+. .+.+||++..+..+++..... ..+.+- .++ .....+..+..+.|+.+.+++++.++
T Consensus 7 ~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1622)
T PLN03130 7 DWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTA 86 (1622)
T ss_pred hhhcCCCccCCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHH
Confidence 347964322 35553 466999995444444433332 111111 111 12222233366666666655554333
Q ss_pred HHHHHHHHH---HHHhcc-CccccchH-HHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHH---HHHHHHHHhH
Q 000553 72 LSSVDVILL---LKEKLH-GEFVSYHE-WLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIK---PVMGILHQLV 143 (1428)
Q Consensus 72 ~~~~~~~~~---~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~l~~~~~~~---~~~~~~~~rt 143 (1428)
...+..... ..+... +.+..+.. +++.++..++++++.++.+.||.|+.+++..+.+||++. +++.++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 164 (1622)
T PLN03130 87 EPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLS-- 164 (1622)
T ss_pred HHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHH--
Confidence 333221111 111110 11122333 566777778888777888999999999999999999999 77776621
Q ss_pred Hhhhhhhhh---hhHHHHHHHHHHHHHHHH-HHHHhhcccCccccc---ccccccCCC-CCcCcCCCCCCCCCChhHHHH
Q 000553 144 TFSSFEVLK---CLKEICLVLLDIMFGISI-NIIRVKRASSRRSSI---EESLLSVDG-DVEEDCNTDSGNNQSYWDLMA 215 (1428)
Q Consensus 144 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~e~~~~~~s~~~ 215 (1428)
..+.... .. ....+++.+++.++. ++.+..++.+ .+. .+...+.++ ......+.+||+++|+|||++
T Consensus 165 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~ 239 (1622)
T PLN03130 165 --VKEYYSSFVLYL-YISEVAAQVLFGILLLVYFPNLDPYP--GYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIF 239 (1622)
T ss_pred --HHHHHhccccce-ehhHHHHHHHHHHHHHHHHhcCCCCc--ccccccccccccccccCCcccCCCCcccccCHHHHHH
Confidence 1111111 11 222333344433333 3333222211 110 000000000 001234678999999999999
Q ss_pred HHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000553 216 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIG 295 (1428)
Q Consensus 216 f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~ 295 (1428)
|||++|++++||+++|+.+|||+|+++++++.+.++|++.|+++. + +++++|+++++++|++.++..++++++.+++.
T Consensus 240 F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 317 (1622)
T PLN03130 240 FGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEEL-K-KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQ 317 (1622)
T ss_pred HHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHh-c-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999765 2 35689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCh
Q 000553 296 FAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD 375 (1428)
Q Consensus 296 ~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~Iy~K~L~l~~~~~~~~~~ 375 (1428)
+++|++++.+++++.++...+.++++++++++..++.+++.++|.+...+++.++|+.+...||+|+++++...+++.++
T Consensus 318 ~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~ 397 (1622)
T PLN03130 318 FVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTS 397 (1622)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCH
Confidence 99999999999999764444667877777777777777788888888899999999999999999999999988888899
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 376 GEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 455 (1428)
Q Consensus 376 g~i~nlms~D~~~i~~~~~~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 455 (1428)
|+++|+|++|++++......+|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++.++++++.+|+
T Consensus 398 G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~ 477 (1622)
T PLN03130 398 GKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHhHH
Q 000553 456 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMV 535 (1428)
Q Consensus 456 R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~~~Lt~~~~ 535 (1428)
|++.++|+++|||+||+||||+.+.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.++.+|++.+
T Consensus 478 r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~v 557 (1622)
T PLN03130 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999988888888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEee
Q 000553 536 FTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW 615 (1428)
Q Consensus 536 ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w 615 (1428)
|+++++++.+..|+..+|..+..+.++++|++||++||+.+|..+... .+. ......|+++|++|+|
T Consensus 558 f~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~----~~~---------~~~~~~I~~~nvsf~y 624 (1622)
T PLN03130 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN----PPL---------EPGLPAISIKNGYFSW 624 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC----Ccc---------cCCCCceEEEeeEEEc
Confidence 999999999999999999999999999999999999998765432100 000 0122469999999999
Q ss_pred cCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCC-eEEEEcCcEEEEcCCCCCCcccHHHHHhc
Q 000553 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAYVPQVPWILSGTIRDNILF 694 (1428)
Q Consensus 616 ~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~-G~i~~~~~i~y~~Q~p~l~~~ti~~nI~~ 694 (1428)
+++++. ++|+|+||++++|++++|+||+|||||||+++|+|+++|.+ |+|.++++||||+|+|||||+||||||+|
T Consensus 625 ~~~~~~---~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~f 701 (1622)
T PLN03130 625 DSKAER---PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701 (1622)
T ss_pred cCCCCC---ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhC
Confidence 854323 35999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHH
Q 000553 695 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774 (1428)
Q Consensus 695 g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~ 774 (1428)
|+++|+++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++|++
T Consensus 702 g~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred CCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHhccccCcccccccch---hhhhhhhhhcccccc
Q 000553 775 NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDT---SLHMQKQEMRTNASS 851 (1428)
Q Consensus 775 ~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 851 (1428)
+++.+ .++++|+|+|||++++++.||+|++|++|+|+++|+++|+++..+.+..+..+... ..+............
T Consensus 782 ~~l~~-~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1622)
T PLN03130 782 KCIKD-ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSS 860 (1622)
T ss_pred HHhhH-HhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccccccccccc
Confidence 98766 56789999999999999999999999999999999999998765444332211100 000000000000000
Q ss_pred hhh-h---hhhhccc--ccCCCchhhHHHHHHHHhcCcchHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHhhhhhhhhh
Q 000553 852 ANK-Q---ILLQEKD--VVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW-FITLVICLSAILMQASRNGNDLWLSY 924 (1428)
Q Consensus 852 ~~~-~---~~~~~~~--~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wl~~ 924 (1428)
... . ....... ..+..+......++|+++.|.+++++|++|+++.|. +.+++++++.++.+++..++++|+++
T Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 940 (1622)
T PLN03130 861 KPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSE 940 (1622)
T ss_pred ccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0000000 000000112234567788999999999999998653 34444455666778888899999999
Q ss_pred hhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhc
Q 000553 925 WVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSS 1004 (1428)
Q Consensus 925 w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~ 1004 (1428)
|++.... ......+|+++|++++++..++.+++.+++.+.+.++++++|++++++++++|++|||++|+|+|+|||++
T Consensus 941 w~~~~~~--~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~ 1018 (1622)
T PLN03130 941 WTDQGTP--KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAK 1018 (1622)
T ss_pred HHhcccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHH
Confidence 9985322 12234578889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHh
Q 000553 1005 DLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTET 1084 (1428)
Q Consensus 1005 D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Et 1084 (1428)
|++.+|..++..+..++..++.+++.++++++..|+++++++|+.++++.++++|.+++|++++++.++++|+++|+.|+
T Consensus 1019 Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Et 1098 (1622)
T PLN03130 1019 DLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEA 1098 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999988888888888888999888888999999999999999999999999999999
Q ss_pred hcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHH
Q 000553 1085 LNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ------------------------------VGLA 1134 (1428)
Q Consensus 1085 l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~------------------------------~gl~ 1134 (1428)
++|+.|||+|+++++|.+.+.+..|.+++..+.....++|++++++ +|++
T Consensus 1099 l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ 1178 (1622)
T PLN03130 1099 LNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLL 1178 (1622)
T ss_pred hCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHH
Confidence 9999999999999999999999999999999998888999876654 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccc--cCCCCCCCCCCCccEEEEEEEEEECCCCCccceee
Q 000553 1135 LSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDI 1212 (1428)
Q Consensus 1135 l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~--~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~i 1212 (1428)
++|++.+...+.++.+.+.++|+.++|+||+.+|.+.|+|+.. ....+++.||.+|.|+|+||+|+|+++.++||+|+
T Consensus 1179 ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~i 1258 (1622)
T PLN03130 1179 LSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGL 1258 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecce
Confidence 6666777778888899999999999999999999999887632 22345567999999999999999988777899999
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCCC
Q 000553 1213 NFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM 1292 (1428)
Q Consensus 1213 s~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~ 1292 (1428)
||+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+||||+||||+++
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~ 1338 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE 1338 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHH
Q 000553 1293 NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370 (1428)
Q Consensus 1293 ~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~ 1370 (1428)
++|+|+|+|+++++++++++++ ||||.++|+|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|+
T Consensus 1339 ~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~ 1418 (1622)
T PLN03130 1339 HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418 (1622)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000553 1371 SECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1371 ~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~~ 1427 (1428)
+.+++||||+||||++|+++||||+|||+|+|+|+|+|+||+++++|.|++|++++|
T Consensus 1419 ~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1419 EEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred HHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999987899999999887
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-209 Score=2124.21 Aligned_cols=1382 Identities=31% Similarity=0.517 Sum_probs=1178.9
Q ss_pred ccchhhhHHHHHHhhhHHHH-HHhhhc-ccccCCc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc-c
Q 000553 17 FSKCFDDMILDFATNMVTIF-IILIIG-ITQRSPR-QNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVS-Y 92 (1428)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 92 (1428)
+.+||.+..+..+++.++.+ ....+- ..++..+ ....+.+..|++...++++ ++++. ++...|..+....+ +
T Consensus 23 ~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 98 (1522)
T TIGR00957 23 FTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMTHLNKTKTALGFLLWI---VCWAD-LFYSFWERSHGRAPAP 98 (1522)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcchHHHHHHHHHHHHHH---HHHHH-HHHHHHhccccccccc
Confidence 55999998887766666655 222111 1122222 4445667778776655433 23322 23333333222222 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhHHhhhhhhhhh---hHHHHHHHHHHHHHHH
Q 000553 93 HEWLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLKC---LKEICLVLLDIMFGIS 169 (1428)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~rt~~~~~~~~~~---~~~~~~~~~~~~~~~~ 169 (1428)
.+++++++.++++++++++++.||.|+.|||.++.+||++++++|++++||+|........ ......+++.++++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1522)
T TIGR00957 99 VFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLS 178 (1522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999875321100 0012333344444544
Q ss_pred HHHHHh-hcccCcccccccccccCCCCCcCcCCCCCCCCCChhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHH
Q 000553 170 INIIRV-KRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTC 248 (1428)
Q Consensus 170 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~ 248 (1428)
.++.+. .+++| .+.+.. ...+.+||+++|++||++|||+||++++|||++|+.+|||+++++++++.+
T Consensus 179 ~~~~~~~~~~~~--------~~~~~~---~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~ 247 (1522)
T TIGR00957 179 QLVLSCFSDKSP--------LFSETN---HDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMV 247 (1522)
T ss_pred HHHHHhhcCCCC--------cccccc---ccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHH
Confidence 433333 22222 111100 112468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc---------------------------------------CCCCcchHHHHHHHHhHHHHHHHHHHH
Q 000553 249 HSKLLSCWQAQRSC---------------------------------------NCTNPSLVRAICCAYGYPYICLGLLKV 289 (1428)
Q Consensus 249 ~~~~~~~w~~~~~~---------------------------------------~~~~~~l~~~l~~~~~~~~~~~~l~~l 289 (1428)
.++|++.|+++.++ +.++++|+++++++|+++++..+++++
T Consensus 248 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l 327 (1522)
T TIGR00957 248 VPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKA 327 (1522)
T ss_pred HHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999875310 113478999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000553 290 VNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLA 368 (1428)
Q Consensus 290 ~~~~~~~~~P~ll~~li~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~Iy~K~L~l~~~ 368 (1428)
+.+++.+++|++++.+++++.++ .+.+.||++++++++++++.+++.++|.|...+++.++|++|+..||+|+|+++..
T Consensus 328 ~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~ 407 (1522)
T TIGR00957 328 IHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNS 407 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Confidence 99999999999999999999763 34456899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 369 ERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEK 448 (1428)
Q Consensus 369 ~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~ 448 (1428)
.+++.++|+++|+|++|++++..+...+|.+|..|+++++++++||.++|+++++|++++++++|++.++++++++.+++
T Consensus 408 ~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 487 (1522)
T TIGR00957 408 ARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVA 487 (1522)
T ss_pred hcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 000553 449 MMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALM-- 526 (1428)
Q Consensus 449 ~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~-- 526 (1428)
+++++|+|++.++|+++|||+||++|||+.+.+++++.|++|++..++..+...+..+.+...|.++.+++|++|.+.
T Consensus 488 ~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 567 (1522)
T TIGR00957 488 HMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDE 567 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999888888888888988889999999876
Q ss_pred CCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCccCCCCCceE
Q 000553 527 GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAV 606 (1428)
Q Consensus 527 ~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 606 (1428)
++.|+++.+|+++++++++..|+..+|..++.+.++.+|++||++||+.++.++..... ... .......+
T Consensus 568 ~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~--~~~--------~~~~~~~i 637 (1522)
T TIGR00957 568 NNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIER--RTI--------KPGEGNSI 637 (1522)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc--ccc--------CCCCCCcE
Confidence 46799999999999999999999999999999999999999999999876543211000 000 00112369
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcCcEEEEcCCCCCCcc
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~~i~y~~Q~p~l~~~ 686 (1428)
+++|++|+|+.+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+||||+|+||++++
T Consensus 638 ~~~~~~~~~~~~~----~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 638 TVHNATFTWARDL----PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713 (1522)
T ss_pred EEEEeEEEcCCCC----CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCC
Confidence 9999999997431 235999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccH
Q 000553 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766 (1428)
Q Consensus 687 ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~ 766 (1428)
||+|||.||.++|+++|++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++|+|+|||||||+||+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-cccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHhccccCcccccccch--hh---hh
Q 000553 767 QVARWILSNAIMG-PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDT--SL---HM 840 (1428)
Q Consensus 767 ~~~~~i~~~~~~~-~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~~~~--~~---~~ 840 (1428)
++++++++.++.. .+.+++|+|+|||+++.++.||+|++|++|+++++|+++++.+..+.+.....+... .. +.
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 873 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLED 873 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccc
Confidence 9999999986521 156789999999999999999999999999999999999998654433322110000 00 00
Q ss_pred h------hhhhcc-------cc----cchhhh------h--hh---h---c-c-cccCCCchhhHHHHHHHHhcCcchHH
Q 000553 841 Q------KQEMRT-------NA----SSANKQ------I--LL---Q---E-K-DVVSVSDDAQEIIEVEQRKEGRVELT 887 (1428)
Q Consensus 841 ~------~~~~~~-------~~----~~~~~~------~--~~---~---~-~-~~~~~~~~~~~~~~~e~~~~g~v~~~ 887 (1428)
. .+..+. .. ...... . .. . . + +..+..+...+..++|+++.|.++++
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 953 (1522)
T TIGR00957 874 SWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELS 953 (1522)
T ss_pred cccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHH
Confidence 0 000000 00 000000 0 00 0 0 0 00000011123456677888999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 967 (1428)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 967 (1428)
+|++|+++.|+...++++++.++.+++..++++|+++|++............+|+++|++++++..++.+++.+++.+.+
T Consensus 954 ~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~ 1033 (1522)
T TIGR00957 954 VYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGG 1033 (1522)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988777666677777888889999999999975321112233456888999999999999888888899999
Q ss_pred HHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000553 968 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047 (1428)
Q Consensus 968 ~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p 1047 (1428)
.++++++|++++++++++|++|||++|+|+++|||++|++.+|..++..+..++..++.+++.++++++..|+++++++|
T Consensus 1034 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~ 1113 (1522)
T TIGR00957 1034 IQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPP 1113 (1522)
T ss_pred HHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1127 (1428)
Q Consensus 1048 ~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1127 (1428)
++++++.++++|.+++|++++++.++++|+++|+.|+++|+.|||+||+|++|.+++.+.+|.++++.+.....++|++.
T Consensus 1114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1193 (1522)
T TIGR00957 1114 LGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAV 1193 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccc--cCC
Q 000553 1128 RLQ-------------------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQ 1180 (1428)
Q Consensus 1128 ~l~-------------------------~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~--~~~ 1180 (1428)
+++ +|++++|+..+...+.++++.++++|+.++|++|+.+|.+.|+|+.. ...
T Consensus 1194 ~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~ 1273 (1522)
T TIGR00957 1194 RLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQET 1273 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCC
Confidence 755 34566778888888999999999999999999999999988877531 223
Q ss_pred CCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC
Q 000553 1181 SLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1260 (1428)
Q Consensus 1181 ~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i 1260 (1428)
.++++||.+|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||+++
T Consensus 1274 ~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i 1353 (1522)
T TIGR00957 1274 APPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI 1353 (1522)
T ss_pred CCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEcccc
Confidence 45568999999999999999988777899999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHhcceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHH
Q 000553 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1261 ~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LA 1338 (1428)
+++++|++|++|||||+||+||||+||||+++++|+|+|+|+++|+++++++++ ||||.++|+|.|||||||||+|||
T Consensus 1354 ~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1354 GLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred CHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcH
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSV 1418 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~ 1418 (1428)
|||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++++++||||+|||+|+|+|+|+|+||+++ +|.
T Consensus 1434 RALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~ 1512 (1522)
T TIGR00957 1434 RALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGI 1512 (1522)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997 589
Q ss_pred HHHHHHhhCC
Q 000553 1419 FSSFVRASTM 1428 (1428)
Q Consensus 1419 f~~l~~~~~~ 1428 (1428)
|++|++++|.
T Consensus 1513 f~~l~~~~g~ 1522 (1522)
T TIGR00957 1513 FYSMAKDAGL 1522 (1522)
T ss_pred HHHHHHHcCC
Confidence 9999999884
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-206 Score=2086.80 Aligned_cols=1399 Identities=30% Similarity=0.524 Sum_probs=1156.1
Q ss_pred cCCCCc-cccccc------cccchhhhHHHHHHhhhHHHH-HHhhhc-c-cccCCcccchhhHHHHHHHHHHHHHHHHHH
Q 000553 4 ICPNSP-FVWDGS------TFSKCFDDMILDFATNMVTIF-IILIIG-I-TQRSPRQNQRINLMEKVFLHILPLVGACLS 73 (1428)
Q Consensus 4 ~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 73 (1428)
+|+... ..|.+. .+.+||++..+...++....+ ..+.+- . ..++...+..+..+.|+.+.+++++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (1495)
T PLN03232 9 YCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEP 88 (1495)
T ss_pred hcCCccccCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHH
Confidence 785322 245543 356999995444444433332 212111 1 011222222236666766665555433333
Q ss_pred HHHHHH---HHHHhcc-CccccchH-HHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHH---HHHHHHHHhHHh
Q 000553 74 SVDVIL---LLKEKLH-GEFVSYHE-WLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIK---PVMGILHQLVTF 145 (1428)
Q Consensus 74 ~~~~~~---~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~l~~~~~~~---~~~~~~~~rt~~ 145 (1428)
...... ...+... .....+.. +++.++..++++++..+.+.||.|+.+++..+.+||++. +++.++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 164 (1495)
T PLN03232 89 VLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLP---- 164 (1495)
T ss_pred HHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHHH----
Confidence 322111 0111111 11122333 666778888888777789999999999999999999999 77777621
Q ss_pred hhhhhhh---hhHHHHHHHHHHHHHHHH-HHHHhhcccCcccccccccccC-CCC-CcCcCCCCCCCCCChhHHHHHHhH
Q 000553 146 SSFEVLK---CLKEICLVLLDIMFGISI-NIIRVKRASSRRSSIEESLLSV-DGD-VEEDCNTDSGNNQSYWDLMAFKSI 219 (1428)
Q Consensus 146 ~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~e~~~~~~s~~~f~W~ 219 (1428)
..+.... .. ....++..+.+.+.. +..+..++.+.-.....+...+ .+. .+...+++||+++|+|||++|+|+
T Consensus 165 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~ 243 (1495)
T PLN03232 165 LKNSINRTALYL-CISSRCCQALFGILLLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWM 243 (1495)
T ss_pred HHHHHhccccce-ehhHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccCCCCccccCCHHHHHHHHHH
Confidence 1111111 11 122222333333222 2222222211000000000010 000 011245789999999999999999
Q ss_pred HHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000553 220 DSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 299 (1428)
Q Consensus 220 ~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P 299 (1428)
+|++++||+++|+.+|||+|+++++++.+.++|++.|+++. + +++++|+++++++|+++++..++++++.+++.+++|
T Consensus 244 ~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P 321 (1495)
T PLN03232 244 TPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES-R-RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGP 321 (1495)
T ss_pred HHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhh-c-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999765 2 356899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHH
Q 000553 300 LLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQ 379 (1428)
Q Consensus 300 ~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~ 379 (1428)
++++.+++++++++..+.++++++++++..++.+++.++|.+...+++.++|+.+...+|+|+++++....++.++|+++
T Consensus 322 ~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~ 401 (1495)
T PLN03232 322 VILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVT 401 (1495)
T ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHH
Confidence 99999999997644455688888888888888899988999999999999999999999999999999888888899999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 380 TFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRR 459 (1428)
Q Consensus 380 nlms~D~~~i~~~~~~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~ 459 (1428)
|+|++|++++.+....+|.+|..|++++++++++|+.+|+++++|++++++++|++.++++++++.++++++.+|+|.+.
T Consensus 402 n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~ 481 (1495)
T PLN03232 402 NMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGI 481 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 000553 460 TGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCL 539 (1428)
Q Consensus 460 ~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~~~Lt~~~~ft~l 539 (1428)
++|+++|||+||+||||+.+.+++++.|++|++..++.....++..+++...|.++++++|++|.+.++.+|++.+|+++
T Consensus 482 ~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l 561 (1495)
T PLN03232 482 INEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSL 561 (1495)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988888877777788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCC
Q 000553 540 ALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNN 619 (1428)
Q Consensus 540 ~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~ 619 (1428)
++++.+..|+..+|..+..+.++.+|++||++||+.++..+... .+. ......|+++|++|+|++++
T Consensus 562 ~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~----~~~---------~~~~~~I~~~~vsF~y~~~~ 628 (1495)
T PLN03232 562 SLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN----PPL---------QPGAPAISIKNGYFSWDSKT 628 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc----CCc---------CCCCCcEEEEeeEEEcCCCC
Confidence 99999999999999999999999999999999998765321100 000 01234699999999998543
Q ss_pred ccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeE-EEEcCcEEEEcCCCCCCcccHHHHHhcCCCC
Q 000553 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS-IHASGSIAYVPQVPWILSGTIRDNILFGKNY 698 (1428)
Q Consensus 620 ~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~-i~~~~~i~y~~Q~p~l~~~ti~~nI~~g~~~ 698 (1428)
++ ++|+|+||++++||+++|+||+|||||||+++|+|+++|++|. +.++++||||+|+|||||+||||||+||+++
T Consensus 629 ~~---~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~ 705 (1495)
T PLN03232 629 SK---PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDF 705 (1495)
T ss_pred CC---ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCcc
Confidence 23 3599999999999999999999999999999999999999975 5678999999999999999999999999999
Q ss_pred ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhc
Q 000553 699 DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778 (1428)
Q Consensus 699 ~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~ 778 (1428)
|+++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.
T Consensus 706 ~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~ 785 (1495)
T PLN03232 706 ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK 785 (1495)
T ss_pred CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHhccccCcccccccchhhhhhhhh-hcccccc-h-hhh
Q 000553 779 GPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQE-MRTNASS-A-NKQ 855 (1428)
Q Consensus 779 ~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~ 855 (1428)
+ .++++|+|+|||+++.++.||+|++|++|+|+++|+++|+.+..+.+.....+.....+..+.. ...+... . ...
T Consensus 786 ~-~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1495)
T PLN03232 786 D-ELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVT 864 (1495)
T ss_pred h-hhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccccccccccccccccccc
Confidence 6 5688999999999999999999999999999999999999876544433221111000000000 0000000 0 000
Q ss_pred hhhhcc---cccCCCchhhHHHHHHHHhcCcchHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 000553 856 ILLQEK---DVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG-WFITLVICLSAILMQASRNGNDLWLSYWVDTTGS 931 (1428)
Q Consensus 856 ~~~~~~---~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~ 931 (1428)
....+. +..+.++......++|+++.|.+++++|++|+++.| ++..++++++.++.++...++++|+++|++....
T Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~ 944 (1495)
T PLN03232 865 IDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP 944 (1495)
T ss_pred ccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 000000 000000011224566778899999999999999865 3444455556667778888899999999975321
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhh
Q 000553 932 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDD 1011 (1428)
Q Consensus 932 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~ 1011 (1428)
......+|+++|++++++..++.+++.+++.+.+.++++++|++++++++++|++||+++|+|+++|||++|++.+|.
T Consensus 945 --~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~ 1022 (1495)
T PLN03232 945 --KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDR 1022 (1495)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHH
Confidence 122346899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHH
Q 000553 1012 SLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTI 1091 (1428)
Q Consensus 1012 ~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tI 1091 (1428)
.++..+..++..++.+++.++++++..++++++++|+.++++.++.+|.+++|++++++..+++|+++|++|+++|+.||
T Consensus 1023 ~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tI 1102 (1495)
T PLN03232 1023 NVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSI 1102 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHH
Confidence 99999999999888888888888877888888888888888888999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHH
Q 000553 1092 RAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ------------------------------VGLALSYAAPI 1141 (1428)
Q Consensus 1092 raf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~------------------------------~gl~l~~~~~~ 1141 (1428)
|+|+++++|.+++.+..|.+++..+.....++|+.++++ +|++++|+..+
T Consensus 1103 raf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 1182 (1495)
T PLN03232 1103 RAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNI 1182 (1495)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999988888888876654 12233445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccc--cCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCC
Q 000553 1142 VSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGG 1219 (1428)
Q Consensus 1142 ~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~--~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~G 1219 (1428)
...++++++.+.++|+.++|+||+.++.+.|+|+.. ....++++||.+|.|+|+||+|+|+++.++||+|+||+|+||
T Consensus 1183 ~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~G 1262 (1495)
T PLN03232 1183 TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPS 1262 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCC
Confidence 667778899999999999999999999998887532 222345679999999999999999887788999999999999
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCCCCChHHHH
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1299 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~ 1299 (1428)
||||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||++|+||||+||||+++++|+|+|
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~ 1342 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW 1342 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcE
Q 000553 1300 SVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1377 (1428)
Q Consensus 1300 ~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~T 1377 (1428)
+|+++++++++++++ ||||.++|+|.|||||||||+||||||+|+|+|||||||||+||.+||+.||++|++.+++||
T Consensus 1343 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~T 1422 (1495)
T PLN03232 1343 EALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422 (1495)
T ss_pred HHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhCC
Q 000553 1378 VITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1428 (1428)
Q Consensus 1378 vI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~~~ 1428 (1428)
+|+||||++|+++||||+|||+|+|+|+|+|+||+++++|.|++|++++|.
T Consensus 1423 vI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1423 MLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999999888899999998873
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-195 Score=1974.86 Aligned_cols=1206 Identities=28% Similarity=0.465 Sum_probs=1059.9
Q ss_pred CCCCCCCChhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhHHH
Q 000553 202 TDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPY 281 (1428)
Q Consensus 202 ~~~e~~~~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~ 281 (1428)
.+||+++|+|||++|||++|++++||+++|+.+|||+|+++++++.+.++|++.|+++..++.++++|+++++++|+|++
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999998765233456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 282 ICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGS--GHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 359 (1428)
Q Consensus 282 ~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~Iy 359 (1428)
+..++++++.+++.+++|++++++|++++..+ ..+.+|++++++++++++.+++.+++.|...++++++|++|...||
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy 162 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIY 162 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996422 2456899999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000553 360 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 439 (1428)
Q Consensus 360 ~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~ 439 (1428)
+|+|+++....++.++|+++|+|++|++++..+...+|.+|..|+++++++++||+++|+++++|++++++++|++.+++
T Consensus 163 ~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~ 242 (1490)
T TIGR01271 163 KKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLG 242 (1490)
T ss_pred HHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 440 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT 519 (1428)
Q Consensus 440 ~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1428)
+++.++++++++++|+|++.++|+|+|||+||+||||+.|.+++++.|++|++..++..++..+..+++...|.++++++
T Consensus 243 ~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1490)
T TIGR01271 243 QKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888889999999999
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCcc
Q 000553 520 FGLFALMGHQLDAAMVFTCLALFNSLISPLN-SFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSN 598 (1428)
Q Consensus 520 f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~-~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~ 598 (1428)
|++|.+.++ ++++.+||+++++++++.|+. .+|..+..+.++.+|++||++||..+|.++...
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~--------------- 386 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY--------------- 386 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc---------------
Confidence 999988755 789999999999999999985 799999999999999999999998776432100
Q ss_pred CCCCCceEEEEccEEeecCCC----------------c-c-----------ccccceeeeeeEecCCCEEEEEcCCCCcH
Q 000553 599 FNSKDMAVIMQDATCSWYCNN----------------E-E-----------EQNVVLNQVSLCLPKGSLVAVIGEVGSGK 650 (1428)
Q Consensus 599 ~~~~~~~i~~~~~sf~w~~~~----------------~-~-----------~~~~~l~~i~l~i~~G~~~~ivG~~GsGK 650 (1428)
+.....++++|++|.|+... . . ..+++|+|+||+|++|++++|+|||||||
T Consensus 387 -~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGK 465 (1490)
T TIGR01271 387 -NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465 (1490)
T ss_pred -cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCH
Confidence 01123589999999996320 0 0 01357999999999999999999999999
Q ss_pred HHHHHHHHcCccCCCeEEEEcCcEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCC
Q 000553 651 SSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1428)
Q Consensus 651 Stll~~llG~~~~~~G~i~~~~~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~ 730 (1428)
||||++|+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|++|++.+|+||+|.+|++
T Consensus 466 STLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~ 545 (1490)
T TIGR01271 466 SSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545 (1490)
T ss_pred HHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCe
Q 000553 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1428)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 810 (1428)
|.+|||||||||+||||+|++|++|||||||||||+++++++++.|+.+ +.+++|+|+|||+++.++.||+|++|++|+
T Consensus 546 g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~-~~~~~tvilvtH~~~~~~~ad~ii~l~~g~ 624 (1490)
T TIGR01271 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK-LMSNKTRILVTSKLEHLKKADKILLLHEGV 624 (1490)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCCeEEEEeCChHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999987655 567899999999999999999999999999
Q ss_pred EEEecChHHHHhccccCccccc--------------------------c--c-----c-hh-----hhhhh-hhh-----
Q 000553 811 VKWIGSSADLAVSLYSGFWSTN--------------------------E--F-----D-TS-----LHMQK-QEM----- 845 (1428)
Q Consensus 811 i~~~g~~~el~~~~~~~~~~~~--------------------------~--~-----~-~~-----~~~~~-~~~----- 845 (1428)
+.+.|+++++......+..... + . + .. .+... ...
T Consensus 625 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1490)
T TIGR01271 625 CYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSI 704 (1490)
T ss_pred EEEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998754211100000 0 0 0 00 00000 000
Q ss_pred --------------------------c--ccccch------hh---------------------------------hh--
Q 000553 846 --------------------------R--TNASSA------NK---------------------------------QI-- 856 (1428)
Q Consensus 846 --------------------------~--~~~~~~------~~---------------------------------~~-- 856 (1428)
. .....+ .. ..
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1490)
T TIGR01271 705 ILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNR 784 (1490)
T ss_pred cccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccc
Confidence 0 000000 00 00
Q ss_pred --hhhcc------------------cc------c-CC-------C---ch--hhHHHHHHHHhcCcchHHHHHHHHhhhh
Q 000553 857 --LLQEK------------------DV------V-SV-------S---DD--AQEIIEVEQRKEGRVELTVYKNYAKFSG 897 (1428)
Q Consensus 857 --~~~~~------------------~~------~-~~-------~---~~--~~~~~~~e~~~~g~v~~~~y~~y~~~~g 897 (1428)
...+. .. . .. . ++ .+...++|+++.|.++|++|++|+++.|
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g 864 (1490)
T TIGR01271 785 GENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNR 864 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcC
Confidence 00000 00 0 00 0 00 0123455677889999999999999876
Q ss_pred H-HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC-----C-CCC-----------Cccchhh-HHHHHHHHHHHHHHHHH
Q 000553 898 W-FITLVICLSAILMQASRNGNDLWLSYWVDTTG-----S-SQT-----------KYSTSFY-LVVLCIFCMFNSFLTLV 958 (1428)
Q Consensus 898 ~-~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~-----~-~~~-----------~~~~~~~-l~~~~~l~~~~~~~~~~ 958 (1428)
+ ..+++++++.++.+++..++++|+++|..... . .+. .....+| +++|++++++..++.++
T Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1490)
T TIGR01271 865 NLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFF 944 (1490)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5 44444456667788999999999999875210 0 000 0012233 45555555556677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 000553 959 RAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQ 1038 (1428)
Q Consensus 959 ~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~ 1038 (1428)
+.+++...+.++++++|++++++++++|++||+++|+|+++|||++|++.+|+.+|..+..++..++.+++.++++++..
T Consensus 945 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~ 1024 (1490)
T TIGR01271 945 RGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQ 1024 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1039 VFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSE 1118 (1428)
Q Consensus 1039 ~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~ 1118 (1428)
|+++++++|++++++.++++|.+++|++++++..+++|+++|+.|+++|+.|||+||++++|.+++.+.++.+++.++..
T Consensus 1025 p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1104 (1490)
T TIGR01271 1025 PYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLY 1104 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 000553 1119 LTASLWLSLRLQ------------------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE 1174 (1428)
Q Consensus 1119 ~~~~~wl~~~l~------------------------~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e 1174 (1428)
.+.++|+..+++ +|++++|++.+...+.++++.+.++|..+.|++|+.+|.+.|+|
T Consensus 1105 ~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e 1184 (1490)
T TIGR01271 1105 LSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQE 1184 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999987765 45556677778888899999999999999999999999988876
Q ss_pred cccc----------------CCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHH
Q 000553 1175 ELCG----------------YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1238 (1428)
Q Consensus 1175 ~~~~----------------~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~ 1238 (1428)
+... ...+++.||.+|.|+|+||+|+|+++.+++|+||||+|+||||||||||||||||||+++
T Consensus 1185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~l 1264 (1490)
T TIGR01271 1185 EPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264 (1490)
T ss_pred cccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 4211 012345799999999999999999877899999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CC
Q 000553 1239 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GL 1316 (1428)
Q Consensus 1239 L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gL 1316 (1428)
|+|+++ .+|+|+|||+||++++++++|++|++|||||+||+||||+||||++.++|+++|+||++++++++++++ ||
T Consensus 1265 L~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GL 1343 (1490)
T TIGR01271 1265 LLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKL 1343 (1490)
T ss_pred HhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccc
Confidence 999998 799999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred chhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEE
Q 000553 1317 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILI 1396 (1428)
Q Consensus 1317 dt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~V 1396 (1428)
||.++|+|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++++.+||||+|
T Consensus 1344 dt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlv 1423 (1490)
T TIGR01271 1344 DFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLV 1423 (1490)
T ss_pred ccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000553 1397 LDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1397 l~~G~ive~g~p~eLl~~~~s~f~~l~~~~~ 1427 (1428)
||+|+|+|+|+|++|++ ++|.|++|+++++
T Consensus 1424 L~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1424 IEGSSVKQYDSIQKLLN-ETSLFKQAMSAAD 1453 (1490)
T ss_pred EECCEEEEeCCHHHHHc-CCcHHHHHHHHhC
Confidence 99999999999999997 5789999999875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-185 Score=1875.87 Aligned_cols=1221 Identities=32% Similarity=0.527 Sum_probs=1049.8
Q ss_pred CCCCCCCCChhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhh-------------------
Q 000553 201 NTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRS------------------- 261 (1428)
Q Consensus 201 ~~~~e~~~~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~------------------- 261 (1428)
.+.||+++||+.|+++.|++|++.+..|..|+.+|||+...+.++-++..++.+..+++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 4679999999999999999999999999999999999988888876665555443222100
Q ss_pred --------------------------------c-----------------------------------------------
Q 000553 262 --------------------------------C----------------------------------------------- 262 (1428)
Q Consensus 262 --------------------------------~----------------------------------------------- 262 (1428)
+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence 0
Q ss_pred ----------CCCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHHHHHHH
Q 000553 263 ----------NCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGS-GHLDGYVLAIALGLTSIL 331 (1428)
Q Consensus 263 ----------~~~~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~g~~l~~~~~~~~~~ 331 (1428)
.++..+|+++++++|++.++..++++++.+++.+++|++++.++++++++. ....|+++++++++++++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 012347999999999999999999999999999999999999999997633 334578888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 332 KSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERS--EFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVA 409 (1428)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ir~~L~~~Iy~K~L~l~~~~~~--~~~~g~i~nlms~D~~~i~~~~~~~~~~w~~p~~i~i~ 409 (1428)
++++.++|.|...+.+.++|++|...||+|+++++..+.. +.++|+++|+|++|++++..+..++|.+|..|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887664 56889999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHH
Q 000553 410 LYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSS 489 (1428)
Q Consensus 410 ~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~ 489 (1428)
+++||+++|+++++|++++++++|++.++++++.+.++++++++|+|++.++|+++|||+||+||||+.|.+++++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 490 EVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRL 569 (1428)
Q Consensus 490 El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI 569 (1428)
|++.+++..+..++..++++++|.++.+++|++|.+.+++||++.+||++++|++++.|+.++|..++.+.++.+|++||
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCchh----hhh-----hcCCCCcc----cCC----------------------------------CccCCCC
Q 000553 570 TRFLGCSEYKHE----LEQ-----AANSPSYI----SNG----------------------------------LSNFNSK 602 (1428)
Q Consensus 570 ~~fL~~~e~~~~----~~~-----~~~~~~~~----~~~----------------------------------~~~~~~~ 602 (1428)
++||+.+|.... ... ....+... ..+ .......
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 999987763210 000 00000000 000 0000011
Q ss_pred CceEEEEccEEeecCCCc----------------------------------cccccceeeeeeEecCCCEEEEEcCCCC
Q 000553 603 DMAVIMQDATCSWYCNNE----------------------------------EEQNVVLNQVSLCLPKGSLVAVIGEVGS 648 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~----------------------------------~~~~~~l~~i~l~i~~G~~~~ivG~~Gs 648 (1428)
...+.++|++|+|+.... ...+++|+|+||+|++|++++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 234677888887653110 0123479999999999999999999999
Q ss_pred cHHHHHHHHHcCccCCCeEEEEcCcEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCccccc
Q 000553 649 GKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728 (1428)
Q Consensus 649 GKStll~~llG~~~~~~G~i~~~~~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig 728 (1428)
|||||+++|+|+++|++|+|.++++||||+|+||++++||+|||.|+.++++++|++++++|+|+.|++.+|+|++|.+|
T Consensus 698 GKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred cHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeC
Q 000553 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1428)
Q Consensus 729 ~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~ 808 (1428)
++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+ ..+++|+|+|||+++.++.||+|++|++
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-hhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999987665 4568999999999999999999999999
Q ss_pred CeEEEecChHHHHhccccCcccccccc---h--hhhhhhh--hhccccc---c-h---hhhhhh-hcccccCCCchhhHH
Q 000553 809 GQVKWIGSSADLAVSLYSGFWSTNEFD---T--SLHMQKQ--EMRTNAS---S-A---NKQILL-QEKDVVSVSDDAQEI 873 (1428)
Q Consensus 809 G~i~~~g~~~el~~~~~~~~~~~~~~~---~--~~~~~~~--~~~~~~~---~-~---~~~~~~-~~~~~~~~~~~~~~~ 873 (1428)
|++.++|+++++.+... +........ . ......+ ....... . . ..+... ...+.........+.
T Consensus 857 G~i~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTSL-YATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred CEEEEecCHHHHHhChH-HHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 99999999999875421 111110000 0 0000000 0000000 0 0 000000 000000001112344
Q ss_pred HHHHHHhcCcchHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHH
Q 000553 874 IEVEQRKEGRVELTVYKNYAKFSGWFI-TLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFN 952 (1428)
Q Consensus 874 ~~~e~~~~g~v~~~~y~~y~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~ 952 (1428)
.++|+++.|.++|++|++|++..|... ++.++++.++.+++..++++|+++|++... ......|+++|+++.++.
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~----~~~~~~~l~~y~~~~~~~ 1011 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF----KLSAATYLYVYLGIVLLG 1011 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CCCcccHHHHHHHHHHHH
Confidence 566778889999999999999877443 344444556677888889999999987431 123356888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 000553 953 SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1032 (1428)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~ 1032 (1428)
.++.+++.+.....+.++++++|++++++++++|++|||++|+|+++|||++|++.+|..++..+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHH
Q 000553 1033 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQ 1112 (1428)
Q Consensus 1033 ~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~ 1112 (1428)
++++..|+++++++|+.++++.++++|.+.+|+++|++..+++|+++++.|+++|+.|||+|+++++|.+++.+..|.+.
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 88888998888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1113 RTSYSELTASLWLSLRLQ-----------------------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLE 1163 (1428)
Q Consensus 1113 ~~~~~~~~~~~wl~~~l~-----------------------------~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sve 1163 (1428)
+..+.....++|+..+++ ++++++|+..+...+.++++.++++|+.++|++
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888999887654 234556667777888899999999999999999
Q ss_pred HHHhhhcC-Ccccccc-------------------------CCCCC---CCCCCCccEEEEEEEEEECCCCCccceeeeE
Q 000553 1164 RVLEYMDV-PQEELCG-------------------------YQSLS---PDWPFQGLIEFQNVTMRYKPSLPAALHDINF 1214 (1428)
Q Consensus 1164 Ri~~~~~~-~~e~~~~-------------------------~~~~~---~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~ 1214 (1428)
|+.+|.+. |+|+... ...++ +.||..|.|+|+||+|+|+++.++||+||||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf 1331 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSF 1331 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceE
Confidence 99999964 3332100 01112 2356779999999999998877789999999
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCCCCC
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND 1294 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~~ 1294 (1428)
+|+||||||||||||||||||+++|+|+++|++|+|+|||+||++++++++|++|++|||||+||+||||+||||+++++
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~s 1411 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEAS 1411 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccC-CCEEEEeccccCCCHHHHHHHHHHHHH
Q 000553 1295 DLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKS-SKVLCLDECTANVDAQTASILQNAISS 1371 (1428)
Q Consensus 1295 d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~-~~ILlLDEaTS~lD~~te~~Iq~~i~~ 1371 (1428)
|+|+|+|+++++++++++++ ||||.++|+|.|||||||||||||||||++ |+|||||||||+||.+||+.||++|++
T Consensus 1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1412 SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999998 999999999999999999999999999996 899999999999999999999999999
Q ss_pred hcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000553 1372 ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1372 ~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~~ 1427 (1428)
.|++||||+||||++|+.+||||+|||+|+|+|+|+|+||+++++|.|++|++.+|
T Consensus 1492 ~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1492 AFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999987899999999876
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-144 Score=1356.74 Aligned_cols=1129 Identities=21% Similarity=0.278 Sum_probs=834.4
Q ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccCCC-c--hh--HHH-HHHHHHHHHHHHHHHH-H
Q 000553 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLL---NKLIKFLQQGSG-H--LD--GYV-LAIALGLTSILKSFFD-T 337 (1428)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll---~~li~~~~~~~~-~--~~--g~~-l~~~~~~~~~~~~~~~-~ 337 (1428)
++++-+..+-++++++..+..++..+....+|++. .++.+.+....+ . .. -+. +.+.+.+..++.+++. .
T Consensus 14 ~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 14 SFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVS 93 (1228)
T ss_pred chHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556677777777777778888888755 344444333111 1 01 111 1112222222222222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 000553 338 QYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-----SFHDAWSLPFQIGVALYL 412 (1428)
Q Consensus 338 ~~~~~~~~~~~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-----~~~~~w~~p~~i~i~~~l 412 (1428)
.+.+...|...++|......+ ||...+.++....|++.+-|+.|+++|.++.. ++|.+-....-++++++.
T Consensus 94 c~~~~geRq~~riR~~yl~~i----LrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAI----LRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777655554 66667777777779999999999999998643 344433333334444433
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 000553 413 LYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVK 492 (1428)
Q Consensus 413 L~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~ 492 (1428)
.|++ +++.+.+..++.......++.+.+...+.+++..+.-+...|++++||+|-.|+-|+...++..+.-+.-.+
T Consensus 170 -~W~L---tlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k 245 (1228)
T KOG0055|consen 170 -GWKL---TLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALK 245 (1228)
T ss_pred -HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHH
Confidence 3333 334444444445556677787888888888888899999999999999999999999888877654333333
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 493 HLSTRKYLDAWCVFFW--ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLT 570 (1428)
Q Consensus 493 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~ 570 (1428)
...+......+...+. .+.......++||..++..+..+++.+|+.+.-.-.-...|.+....++.+.+|.++..+|.
T Consensus 246 ~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~ 325 (1228)
T KOG0055|consen 246 FGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIF 325 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHH
Confidence 3333333333222221 12223345678887777778899999999986666677788888899999999999999999
Q ss_pred HhhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcH
Q 000553 571 RFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGK 650 (1428)
Q Consensus 571 ~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGK 650 (1428)
+-++.....+.... ++ .......+.|+++|++|+||++++ .++|+|+||+|++|+.+++||||||||
T Consensus 326 ~~i~~~~~i~~~~~---------~~-~~~~~~~g~ief~nV~FsYPsRpd---v~Il~g~sl~i~~G~~valVG~SGsGK 392 (1228)
T KOG0055|consen 326 ETIDRKPSIDPYSK---------GG-RVLSSIKGEIEFRNVCFSYPSRPD---VKILKGVSLKIPSGQTVALVGPSGSGK 392 (1228)
T ss_pred HHhcCCCCCCcccc---------cC-CcccccccceEEEEEEecCCCCCc---chhhCCeEEEeCCCCEEEEECCCCCCH
Confidence 98865432221110 00 011245678999999999998754 345999999999999999999999999
Q ss_pred HHHHHHHHcCccCCCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHH
Q 000553 651 SSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDI 716 (1428)
Q Consensus 651 Stll~~llG~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di 716 (1428)
||++++|.|.|+|++|+|.++| +||.|+|+|.||++||+|||.||+| -+.++..++++....++.+
T Consensus 393 ST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi 472 (1228)
T KOG0055|consen 393 STLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFI 472 (1228)
T ss_pred HHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHH
Confidence 9999999999999999999987 5999999999999999999999986 4678888899999999999
Q ss_pred hcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcch
Q 000553 717 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796 (1428)
Q Consensus 717 ~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~ 796 (1428)
..+|+|++|.+||+|..|||||||||||||||.++|+||||||||||||++.++.+ +.++.. ..+|+|.|+|+||++.
T Consensus 473 ~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~-~~~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 473 LKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDK-ASKGRTTIVVAHRLST 550 (1228)
T ss_pred HhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHH-hhcCCeEEEEeeehhh
Confidence 99999999999999999999999999999999999999999999999999977654 444544 6789999999999999
Q ss_pred hhcCCEEEEEeCCeEEEecChHHHHhccccCcccccccchhhhhh----hhh-hcccccch--hhhhhhhcccc--cCCC
Q 000553 797 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ----KQE-MRTNASSA--NKQILLQEKDV--VSVS 867 (1428)
Q Consensus 797 l~~ad~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~--~~~~~~~~~~~--~~~~ 867 (1428)
+++||+|++|++|+|+|.|+|+||++..+.+.++....+.....+ +.+ .+....+. ........+.. ....
T Consensus 551 IrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~ 630 (1228)
T KOG0055|consen 551 IRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLL 630 (1228)
T ss_pred hhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccc
Confidence 999999999999999999999999988876665432111111000 000 00000000 00000000000 0000
Q ss_pred --chhhHHHHHHHHhcCcchHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCC---CCccchh
Q 000553 868 --DDAQEIIEVEQRKEGRVELTVYKNYAKF--SGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQ---TKYSTSF 940 (1428)
Q Consensus 868 --~~~~~~~~~e~~~~g~v~~~~y~~y~~~--~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~---~~~~~~~ 940 (1428)
...++..++...+.. ....++.-++. ..|..+++.++.+++..+....-.+.+++..+...... .......
T Consensus 631 ~~~~~~e~~~~~~~~~~--~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~ 708 (1228)
T KOG0055|consen 631 SVKPEGEDPEEPVSEED--EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRA 708 (1228)
T ss_pred ccccccccccccccccc--ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 000000000000000 11123333331 14555555545544444433333333333222111001 1112345
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccc--CChhhHHHHHhcChhhhhhhhhHHHH
Q 000553 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQ--TPGGRILNRFSSDLYMIDDSLPFILN 1018 (1428)
Q Consensus 941 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~--~~~G~ilnRfs~D~~~id~~l~~~l~ 1018 (1428)
|..+|+++++...++.++..+++.+++.+...++|.++|++++++++.|||. +. |.+.+|+++|...+...+...+.
T Consensus 709 ~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~ 787 (1228)
T KOG0055|consen 709 WALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLS 787 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999996 55 99999999999999999999998
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhc
Q 000553 1019 ILLANFVGLLGIAVVLSYVQVFF---LLLLVPFWFIYSKLQFFYR-STSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094 (1428)
Q Consensus 1019 ~~~~~~~~~l~~~~~~~~~~~~~---~~~~~p~~~~~~~i~~~y~-~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf 1094 (1428)
.++.++..++..+++.++..|-+ .+++.|++++..+.+..+. ..+++.+....+ ......|++++++||++|
T Consensus 788 ~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~e----a~~iA~eai~NIrTV~al 863 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEE----ASKIAIEAVSNIRTVAAL 863 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHhHHHHHHH
Confidence 88888888877777777776655 4456777777666665544 333333332222 224678999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 000553 1095 KSEDYFMAKFKEHVVLYQRTSYS------------------ELTASLWLSLRLQ---------VGLALSYAAPIVSLLGN 1147 (1428)
Q Consensus 1095 ~~e~~~~~~~~~~~~~~~~~~~~------------------~~~~~~wl~~~l~---------~gl~l~~~~~~~~~l~~ 1147 (1428)
+.|++|.+.|.+.++...+.... .+++..|++.++- +-..+.....-...++.
T Consensus 864 ~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~ 943 (1228)
T KOG0055|consen 864 CAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQ 943 (1228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887766433 2344556665553 11111111122234566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCC-CCccceeeeEEEeCCcEEEEEC
Q 000553 1148 FLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVG 1226 (1428)
Q Consensus 1148 ~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvG 1226 (1428)
.....++..++..|+.++++.++.+++-...........+.+|.|+|+||+|+||.. ..+||+|+|++|++||+||+||
T Consensus 944 ~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG 1023 (1228)
T KOG0055|consen 944 ASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVG 1023 (1228)
T ss_pred HHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEEC
Confidence 777888999999999999999988764321111111122468999999999999743 2369999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCC-CCChHHHHHHHHHc
Q 000553 1227 RTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKC 1305 (1428)
Q Consensus 1227 rTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~ 1305 (1428)
||||||||++.+|.|+|+|++|.|.|||.||+++++++||++|++|+|||.||++||||||.++. ..+.+||.+|++.+
T Consensus 1024 ~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~A 1103 (1228)
T KOG0055|consen 1024 PSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLA 1103 (1228)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999983 46899999999999
Q ss_pred cHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEecc
Q 000553 1306 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1383 (1428)
Q Consensus 1306 ~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaH 1383 (1428)
+.+++|.++ ||||.|||+|.+||||||||+|||||++|||||||||||||+||.++|+.+|++|++...++|.|+|||
T Consensus 1104 NaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAH 1183 (1228)
T KOG0055|consen 1104 NAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAH 1183 (1228)
T ss_pred hhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEec
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000553 1384 RISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1384 rl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~~ 1427 (1428)
||+||++||.|+|+++|+|+|.|+|++|++ ++|.|++|++.+.
T Consensus 1184 RLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1184 RLSTIQNADVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred chhhhhcCCEEEEEECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 999999999999999999999999999999 6789999998653
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-132 Score=1341.51 Aligned_cols=1137 Identities=17% Similarity=0.217 Sum_probs=829.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1428)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1428)
+++-..+.+++.++.+.++.++..++....|+++.++++.+..... ...+++.++++.++..++...+.+...+++.
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 126 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN---VNDIIFSLVLIGIFQFILSFISSFCMDVVTT 126 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334456667777788888888888899999999987642211 1123334444555566666677778888999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHH
Q 000553 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLL-YTQVKFAFVSGLA 426 (1428)
Q Consensus 349 ~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~lL-~~~lg~a~l~g~~ 426 (1428)
++...+...+|+|.++++...++..+.|++.|.++.|++.+..++. .+..+...++.++.++.++ +....++ ++.++
T Consensus 127 ~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~La-lv~l~ 205 (1466)
T PTZ00265 127 KILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLT-LCITC 205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHH
Confidence 9999999999999999999888888889999999999999888653 3444555554444443332 2222222 22233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 427 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506 (1428)
Q Consensus 427 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 506 (1428)
++.+++.+..++.+++.+..++..+..++..+.+.|.++||++||.|+.|+.+.++..+..+.-.+...+.....++...
T Consensus 206 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~ 285 (1466)
T PTZ00265 206 VFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIG 285 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445567778888888888888899999999999999999999999999998876654444444444444444322
Q ss_pred HHHHH--HHHHHHHHHHHHHHhCC--------CCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 000553 507 FWATT--PTLFSLFTFGLFALMGH--------QLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 576 (1428)
Q Consensus 507 ~~~~~--~~~~~~~~f~~y~~~~~--------~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~ 576 (1428)
+.... ...+.++++|.+.+..+ .++++.+++.+........++..+...+..+..+.+|.+||.+.++.+
T Consensus 286 ~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~ 365 (1466)
T PTZ00265 286 MINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRK 365 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222 22344567888877653 588888888765554445556666667889999999999999999765
Q ss_pred CCchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHH
Q 000553 577 EYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 656 (1428)
Q Consensus 577 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~ 656 (1428)
+..+.... ... . +....|+++|++|+|+++++ .++|+|+||+|++||+++|+||||||||||+++
T Consensus 366 ~~~~~~~~--~~~---------~-~~~~~I~~~nVsf~Y~~~~~---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~l 430 (1466)
T PTZ00265 366 PLVENNDD--GKK---------L-KDIKKIQFKNVRFHYDTRKD---VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKL 430 (1466)
T ss_pred CCCCCCCC--Ccc---------C-CCCCcEEEEEEEEEcCCCCC---CceeccceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 42211000 000 0 11136999999999985422 246999999999999999999999999999999
Q ss_pred HHcCccCCCeEEEEc-C-------------cEEEEcCCCCCCcccHHHHHhcCCC-------------------------
Q 000553 657 ILGEMMLTHGSIHAS-G-------------SIAYVPQVPWILSGTIRDNILFGKN------------------------- 697 (1428)
Q Consensus 657 llG~~~~~~G~i~~~-~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~------------------------- 697 (1428)
|+|.++|++|+|.++ | +||||+|+|.+|++||+|||.+|..
T Consensus 431 L~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1466)
T PTZ00265 431 IERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNK 510 (1466)
T ss_pred HHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccc
Confidence 999999999999994 3 4899999999999999999999741
Q ss_pred ---------------------------------CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHH
Q 000553 698 ---------------------------------YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1428)
Q Consensus 698 ---------------------------------~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRval 744 (1428)
.++++..++++.+++++.+..+|+|++|.+|++|.+|||||||||+|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaI 590 (1466)
T PTZ00265 511 RNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISI 590 (1466)
T ss_pred cccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHH
Confidence 23356777888889999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhcCCEEEEEeCC--------------
Q 000553 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKG-------------- 809 (1428)
Q Consensus 745 ARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G-------------- 809 (1428)
|||++++|+|||||||||+||+++++.+.+. +.... .+++|+|+|||+++.+..||+|++|++|
T Consensus 591 ARAll~~P~ILlLDEpTSaLD~~se~~i~~~-L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~ 669 (1466)
T PTZ00265 591 ARAIIRNPKILILDEATSSLDNKSEYLVQKT-INNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGED 669 (1466)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccc
Confidence 9999999999999999999999999988776 43311 2478999999999999999999999886
Q ss_pred ---------------------------------eEEEecChHHHHh-ccccCcccccccchhhhhh-----hhhh---cc
Q 000553 810 ---------------------------------QVKWIGSSADLAV-SLYSGFWSTNEFDTSLHMQ-----KQEM---RT 847 (1428)
Q Consensus 810 ---------------------------------~i~~~g~~~el~~-~~~~~~~~~~~~~~~~~~~-----~~~~---~~ 847 (1428)
+|+|+|+|+||++ ..+.+..+........... .... ..
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~ 749 (1466)
T PTZ00265 670 PTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSS 749 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccc
Confidence 5999999999997 3454444321110000000 0000 00
Q ss_pred c-ccch-h---h--hhh--hhccc-----ccCCCchh-hHHHHH------HHH--hcCcc--hHHHHHHHHhhhhHHHHH
Q 000553 848 N-ASSA-N---K--QIL--LQEKD-----VVSVSDDA-QEIIEV------EQR--KEGRV--ELTVYKNYAKFSGWFITL 902 (1428)
Q Consensus 848 ~-~~~~-~---~--~~~--~~~~~-----~~~~~~~~-~~~~~~------e~~--~~g~v--~~~~y~~y~~~~g~~~~~ 902 (1428)
. .... . . ... ..... .....++. .+...+ ++. ..... .+..+..+++...+. ++
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 828 (1466)
T PTZ00265 750 AYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD-VT 828 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH-HH
Confidence 0 0000 0 0 000 00000 00000000 000000 000 00001 111222333222222 22
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000553 903 VICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTK 981 (1428)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~ 981 (1428)
+.++++++..++....++.++.+++.... .........|..++++++++..++.+++.++..+.+.+...+++.+++++
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ 908 (1466)
T PTZ00265 829 IIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFEN 908 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233444444555555566666542211 00111234567777788888888899999999999999999999999999
Q ss_pred ccCCCcccccc--CChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 982 IVNAPVLFFDQ--TPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1059 (1428)
Q Consensus 982 vl~~p~~ff~~--~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y 1059 (1428)
+++.|++|||+ +++|++++|+++|++.+...+...+..++..++.+++.++++++..|.++++++|+.++........
T Consensus 909 ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 988 (1466)
T PTZ00265 909 ILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIR 988 (1466)
T ss_pred HHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 8899999999999999999988888888888888888878778888877766665544332221111
Q ss_pred HH--HHHHHHHH-------------HHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000553 1060 RS--TSRELRRL-------------DSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT---- 1120 (1428)
Q Consensus 1060 ~~--~sr~l~rl-------------~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~---- 1120 (1428)
.+ ..++.++. +.+..+.....++|+++|++|||+|+.|+++.+++.+..+...+.......
T Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1466)
T PTZ00265 989 ARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSM 1068 (1466)
T ss_pred HHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11121111 122234566789999999999999999999999999888776655443211
Q ss_pred --------------HHHHHHHHHH------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccc
Q 000553 1121 --------------ASLWLSLRLQ------VGLALS---YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC 1177 (1428)
Q Consensus 1121 --------------~~~wl~~~l~------~gl~l~---~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~ 1177 (1428)
...|++..+- +|-.+. +.+.....+..+...+.+++.+..+.+|+.++++.+++...
T Consensus 1069 ~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~ 1148 (1466)
T PTZ00265 1069 LWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDV 1148 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC
Confidence 1223333221 222211 12222234567778889999999999999999987654211
Q ss_pred cC-CCCC--CCCCCCccEEEEEEEEEECCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC--------
Q 000553 1178 GY-QSLS--PDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-------- 1245 (1428)
Q Consensus 1178 ~~-~~~~--~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-------- 1245 (1428)
.. .... ...+.+|.|+|+||+|+|++. ..+||+|+||+|+|||++||||+||||||||+++|+|+|+|
T Consensus 1149 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~ 1228 (1466)
T PTZ00265 1149 RDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVF 1228 (1466)
T ss_pred CCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccc
Confidence 11 1111 112346889999999999743 24799999999999999999999999999999999999999
Q ss_pred ----------------------------------------------CCceEEECCeeCCCCChHhHhcceEEEeCCcccc
Q 000553 1246 ----------------------------------------------CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1279 (1428)
Q Consensus 1246 ----------------------------------------------~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf 1279 (1428)
++|+|+|||+||++++++++|++|+||||||+||
T Consensus 1229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF 1308 (1466)
T PTZ00265 1229 KNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF 1308 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc
Confidence 6999999999999999999999999999999999
Q ss_pred CCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccC
Q 000553 1280 EGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356 (1428)
Q Consensus 1280 ~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~ 1356 (1428)
+|||||||.++. ..+|+|+++|++.++++++|.++ ||||.|||+|.+|||||||||||||||+|+|+|||||||||+
T Consensus 1309 ~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSa 1388 (1466)
T PTZ00265 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSS 1388 (1466)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 999999999884 47999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeC----CeE-EEecChhHHhccCCcHHHHHHHhh
Q 000553 1357 VDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDH----GHL-VEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1357 lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~----G~i-ve~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|.|+|+||+++++|.|++|++.+
T Consensus 1389 LD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1389 LDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred cCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 99999999999999873 69999999999999999999999999 995 599999999986578999999865
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-87 Score=798.66 Aligned_cols=534 Identities=26% Similarity=0.378 Sum_probs=439.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFA 964 (1428)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 964 (1428)
+...+.|.+.-.+++...+ ++.++......+.+.++...++.... ............+..++.+..+++..++.+++.
T Consensus 135 ~~rl~~l~~~~~~~l~~a~-~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~ 213 (716)
T KOG0058|consen 135 LKRLLGLLKPEWKWLVAAF-VLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQ 213 (716)
T ss_pred HHHHHHHhchhHHHHHHHH-HHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554444333333 23333344455555555544443221 111122233455667777888899999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-
Q 000553 965 FGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLL- 1043 (1428)
Q Consensus 965 ~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~- 1043 (1428)
+.+.+...+++..+|++++++.++|||.+.+|++++|++.|...+.+.++..+...+.+.+..++.+..+++.+|-+.+
T Consensus 214 ~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv 293 (716)
T KOG0058|consen 214 YAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLV 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998886544
Q ss_pred --HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1044 --LLVPF-WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1120 (1428)
Q Consensus 1044 --~~~p~-~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 1120 (1428)
+.+|+ .++...+.++|++.+++.+. +-+.......|.+++++|||+|+.|++..++|.+.+++..+..-+...
T Consensus 294 ~~i~~P~v~~~~~~yG~~~rklS~~~Q~----a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~ 369 (716)
T KOG0058|consen 294 TLIVVPIVALVAKIYGKYLRKLSKQTQD----ALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV 369 (716)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 34455566667777776654 344455778899999999999999999999998888776554432211
Q ss_pred ---HHHHH---------------HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 000553 1121 ---ASLWL---------------SLRLQ---------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQ 1173 (1428)
Q Consensus 1121 ---~~~wl---------------~~~l~---------~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~ 1173 (1428)
.-.|. +..+- +--.+.|...+...+.++...|+++.+.++|.+|++|++|.+|
T Consensus 370 a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P 449 (716)
T KOG0058|consen 370 AYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKP 449 (716)
T ss_pred HhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCC
Confidence 11121 11111 2234567778888999999999999999999999999999876
Q ss_pred cccccCCCCCCCCCCCccEEEEEEEEEECCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE
Q 000553 1174 EELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252 (1428)
Q Consensus 1174 e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~I 1252 (1428)
.-... ....+. ..+|.|+|+||+|+||.. ..+||||+||+|+|||+||+||||||||||++++|+|+|+|++|+|++
T Consensus 450 ~i~~~-G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 450 RIPLT-GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCCCC-Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 53222 111122 568999999999999754 346999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCCh
Q 000553 1253 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSV 1329 (1428)
Q Consensus 1253 DG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSg 1329 (1428)
||+||++++.++||++||+|.|||+||+|||||||.++. ..+||||.+|.++++.++||.++ |+||.|||+|..|||
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 999999999999999999999999999999999998875 46899999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChh
Q 000553 1330 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1409 (1428)
Q Consensus 1330 GQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~ 1409 (1428)
|||||+||||||+|||+|||||||||+||.++|..||++|.+..+++|||+|||||+||+.+|+|+|+|+|+|+|.|+|+
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcHHHHHHHhh
Q 000553 1410 TLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1410 eLl~~~~s~f~~l~~~~ 1426 (1428)
||+++++|.|++|++++
T Consensus 688 eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 688 ELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred HHhhCcccHHHHHHHHh
Confidence 99999999999999875
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-78 Score=757.26 Aligned_cols=515 Identities=28% Similarity=0.439 Sum_probs=430.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000553 905 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1428)
Q Consensus 905 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 984 (1428)
++..++.+.+..++++..+..+|..-..............++++++...++.+++.+++...+.|....+-.++++++++
T Consensus 160 ~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~ 239 (709)
T COG2274 160 LLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLR 239 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 34555666677777777777766432111122222233456667778889999999999999999999999999999999
Q ss_pred CCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 000553 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIY----SKLQFFYR 1060 (1428)
Q Consensus 985 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~----~~i~~~y~ 1060 (1428)
.|++||.++++|++++|+ +|++.|.+.+...+...+..+...+..++++.+.+|.++++.+...+++ ...+.+.+
T Consensus 240 Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~ 318 (709)
T COG2274 240 LPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLR 318 (709)
T ss_pred CcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 4688888877777666666666666666666666665544433333322 33344444
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
Q 000553 1061 STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA------------------S 1122 (1428)
Q Consensus 1061 ~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~------------------~ 1122 (1428)
+..++. .+..+...++..|++.|+.|||+.+.|.++..++++..++..+..+..... -
T Consensus 319 ~~~~~~----~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~i 394 (709)
T COG2274 319 RKTRKL----IEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLI 394 (709)
T ss_pred HHHHHH----HHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 344455678999999999999999999999999999998888877664332 2
Q ss_pred HHHHHHHH------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEE
Q 000553 1123 LWLSLRLQ------VGLALS---YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1193 (1428)
Q Consensus 1123 ~wl~~~l~------~gl~l~---~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~ 1193 (1428)
.|++..+- +|..+. ....+++.+..++..|+++.....+.+|+.+.++.|+|+..+.. +...|+.+|.|+
T Consensus 395 L~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~~g~I~ 473 (709)
T COG2274 395 LWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKLQGEIE 473 (709)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-cccccccCceEE
Confidence 45554432 443332 34567778889999999999999999999999999998643322 345567899999
Q ss_pred EEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEe
Q 000553 1194 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1273 (1428)
Q Consensus 1194 f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~Vp 1273 (1428)
|+||+|+|+++.+++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++++.+|++|++||
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000553 1274 QSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1350 (1428)
Q Consensus 1274 Qdp~lf~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlL 1350 (1428)
||++||+||||||+..++. .+|||+++|++.+|.++++.++ ||||.++|+|.|||||||||++|||||+++|+||||
T Consensus 554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 9999999999999998775 4679999999999999999999 999999999999999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000553 1351 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1351 DEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
|||||+||++||+.|.+.|.+..++||+|+||||+++++.||||+|||+|+|+|.|+|+||++. +|.|+++++.+
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999997 68999999765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-75 Score=741.95 Aligned_cols=515 Identities=27% Similarity=0.420 Sum_probs=419.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000553 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1428)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1428)
++.++........++++....+... ........+...++++.++..++.+...+...+.+.+...+++.++++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 98 (567)
T COG1132 21 LLLLLSALLSLLLPLLIGRIIDALL--ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRL 98 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344445555555666655444322 01112223444455555566677777777777788999999999999999999
Q ss_pred CccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1428)
Q Consensus 986 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~ 1065 (1428)
|+++|+.+++|++++|+++|++.++..+......+...++.+++.++++....|.+.++++....++......+.+..+.
T Consensus 99 ~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T COG1132 99 PLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178 (567)
T ss_pred CHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888775555556777777777777777766655544444444444444444466
Q ss_pred HHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
Q 000553 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS------------------LWLSL 1127 (1428)
Q Consensus 1066 l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~------------------~wl~~ 1127 (1428)
..+....+.+.+.+.+.|+++|+++||+|+.++...+++.+..+...+......... .|++.
T Consensus 179 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T COG1132 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGG 258 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777889999999999999999999999887777766665544432211111 11111
Q ss_pred HH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEE
Q 000553 1128 RL------Q---VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVT 1198 (1428)
Q Consensus 1128 ~l------~---~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs 1198 (1428)
.+ . +...+.+...+...+..+...+..++....|.+|+.++.+.+++...... +.++..|.|+|+||+
T Consensus 259 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~~~~~I~f~~vs 335 (567)
T COG1132 259 FLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD---PLKDTIGSIEFENVS 335 (567)
T ss_pred HHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC---CCCCCCCeEEEEEEE
Confidence 11 0 22344566666777888888899999999999999999998665322111 134567889999999
Q ss_pred EEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccc
Q 000553 1199 MRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1278 (1428)
Q Consensus 1199 ~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l 1278 (1428)
|+|++ .+++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|+|||+||++++.+++|++|++|||||+|
T Consensus 336 f~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 336 FSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred EEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee
Confidence 99975 35799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecccc
Q 000553 1279 FEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355 (1428)
Q Consensus 1279 f~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS 1355 (1428)
|+||||+||+++++ .+|||+++|++.++++|+++++ |+||.+||+|.+||||||||+|||||++|+|+|||||||||
T Consensus 415 F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 99999999999976 6999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000553 1356 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1356 ~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~~ 1427 (1428)
++|++||+.|++.+++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.|++||+.++
T Consensus 495 alD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 495 ALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred ccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 99999999999999988889999999999999999999999999999999999999997 689999998765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-74 Score=730.76 Aligned_cols=533 Identities=19% Similarity=0.255 Sum_probs=416.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 889 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTK-YSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 967 (1428)
Q Consensus 889 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 967 (1428)
++.|.+...+... +.+++.++..++....++.+.+..+.....+.. .....++.+++++.++..++.+++.+.....+
T Consensus 13 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (588)
T PRK11174 13 LKQQSKPAKRWLN-LSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAG 91 (588)
T ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554333322 222344455555555666666555432100111 11223344455556667777788888888899
Q ss_pred HHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000553 968 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047 (1428)
Q Consensus 968 ~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p 1047 (1428)
.+...+++.++++++++.|.++|++.++|++++|+++|++.+++.+...+..++..++.+++.++++.+.+|.++++++.
T Consensus 92 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 171 (588)
T PRK11174 92 QHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLG 171 (588)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888877777777777777777766554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000553 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLW--- 1124 (1428)
Q Consensus 1048 ~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w--- 1124 (1428)
..++...+...+.+..++..+...+..+.+.+.+.|.++|+++||+|++|+++.+++.+..++..+..........+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (588)
T PRK11174 172 TAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSA 251 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444556677889999999999999999999999999988777766554332211111
Q ss_pred ----------------HHHHHH----HHH-------H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000553 1125 ----------------LSLRLQ----VGL-------A-----LSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVP 1172 (1428)
Q Consensus 1125 ----------------l~~~l~----~gl-------~-----l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~ 1172 (1428)
.+..+. +|. . +.++..+...+..+...+.++.....+.+|+.++++.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 331 (588)
T PRK11174 252 VLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETP 331 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 110100 110 0 01222344566677778888999999999999999877
Q ss_pred ccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE
Q 000553 1173 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252 (1428)
Q Consensus 1173 ~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~I 1252 (1428)
+++...... +...+..+.|+|+||+|.|+++ +++|+|+||+|+|||++||||+||||||||+++|+|++ |++|+|++
T Consensus 332 ~~~~~~~~~-~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i 408 (588)
T PRK11174 332 LAHPQQGEK-ELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKI 408 (588)
T ss_pred CcccCCCcc-ccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEE
Confidence 643211111 1111234679999999888654 57999999999999999999999999999999999999 99999999
Q ss_pred CCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCCh
Q 000553 1253 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSV 1329 (1428)
Q Consensus 1253 DG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSg 1329 (1428)
||+|+++++.+++|++|+||||||++|+|||||||.+++ +.+|+|+++|++.++++++++++ |+||.+||+|.+|||
T Consensus 409 ~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSG 488 (588)
T PRK11174 409 NGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488 (588)
T ss_pred CCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCH
Confidence 999999999999999999999999999999999999884 58999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChh
Q 000553 1330 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1409 (1428)
Q Consensus 1330 GQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~ 1409 (1428)
|||||++||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++.+||+|+||++|+++|.|+|+
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~ 568 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYA 568 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHhccCCcHHHHHHHhh
Q 000553 1410 TLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1410 eLl~~~~s~f~~l~~~~ 1426 (1428)
||+++ +|.|++|++.+
T Consensus 569 eL~~~-~~~y~~l~~~q 584 (588)
T PRK11174 569 ELSQA-GGLFATLLAHR 584 (588)
T ss_pred HHHhc-chHHHHHHHHh
Confidence 99986 46999999765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-74 Score=741.34 Aligned_cols=516 Identities=26% Similarity=0.377 Sum_probs=419.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000553 903 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 982 (1428)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 982 (1428)
..+++.++...+....+++....++..............+.+++++.++..++..++.+.+.+.+.+...++++++++++
T Consensus 165 ~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~l 244 (711)
T TIGR00958 165 SAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSL 244 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555666666667777766654321111111122334455556667777888888889999999999999999999
Q ss_pred cCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 983 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062 (1428)
Q Consensus 983 l~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~ 1062 (1428)
++.|.+||+++++|+++||+++|++.+++.+...+..++..++.+++.++++.+.+|.+.++++....+...+.+.+.+.
T Consensus 245 l~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~ 324 (711)
T TIGR00958 245 LRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKR 324 (711)
T ss_pred HcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888888888888876655444444333444444444
Q ss_pred HHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-------------
Q 000553 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEL---TASLWLS------------- 1126 (1428)
Q Consensus 1063 sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~wl~------------- 1126 (1428)
.++..+...+..+...+++.|+++|++|||+|++|+++.+++.+..++..+...... ....|..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 404 (711)
T TIGR00958 325 YQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLY 404 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555667899999999999999999999999999888877665543321 1111211
Q ss_pred --HHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEE
Q 000553 1127 --LRL------QV---GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQ 1195 (1428)
Q Consensus 1127 --~~l------~~---gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~ 1195 (1428)
..+ .+ ..++.|...+...+..+...+.++.++..+.+|+.++++.+++...... ...++.+|.|+|+
T Consensus 405 ~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~~I~~~ 482 (711)
T TIGR00958 405 YGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--LAPLNLEGLIEFQ 482 (711)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCCCCCCCeEEEE
Confidence 110 02 2334456667778888999999999999999999999987765422111 1224567889999
Q ss_pred EEEEEECCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeC
Q 000553 1196 NVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1274 (1428)
Q Consensus 1196 nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1274 (1428)
||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||
T Consensus 483 nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 562 (711)
T TIGR00958 483 DVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQ 562 (711)
T ss_pred EEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEec
Confidence 999999753 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000553 1275 SPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351 (1428)
Q Consensus 1275 dp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLD 1351 (1428)
||++|+|||||||.++. ..+|+++++++++++++++++++ |+||.+||+|.+||||||||++||||++++|+|||||
T Consensus 563 ~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILD 642 (711)
T TIGR00958 563 EPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD 642 (711)
T ss_pred CccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999998764 46899999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000553 1352 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1423 (1428)
Q Consensus 1352 EaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~ 1423 (1428)
||||+||++|++.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+||++++ |.|++|+
T Consensus 643 EpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~-~~y~~lv 711 (711)
T TIGR00958 643 EATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711 (711)
T ss_pred ccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC-CchHhcC
Confidence 9999999999999999 3445799999999999999999999999999999999999999864 6898874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-73 Score=735.35 Aligned_cols=513 Identities=22% Similarity=0.267 Sum_probs=411.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000553 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1428)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1428)
+..++..+.....++.++...|..-..........+..+++++.++..++.+++.+.....+.+...+++..+++++++.
T Consensus 143 ~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~ 222 (686)
T TIGR03797 143 AMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRL 222 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555566666655553211111111222344555566667788888889999999999999999999999999
Q ss_pred CccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1428)
Q Consensus 986 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~ 1065 (1428)
|++||++.++|++++|++ |++.+.+.+...+...+..+..+++.++++++.+|+++++++.+.+++..+.....+..+.
T Consensus 223 ~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 301 (686)
T TIGR03797 223 PVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVR 301 (686)
T ss_pred CHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 7888888877766666666665666666667777766554444333333333233222223
Q ss_pred HHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 000553 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ--------------- 1130 (1428)
Q Consensus 1066 l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~--------------- 1130 (1428)
..+......+...+++.|+++|+.|||+|+.|+++.+++.+..++..+..+.....+.|......
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344556789999999999999999999999999988888777666554433333221111
Q ss_pred ---------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEE
Q 000553 1131 ---------VGL---ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVT 1198 (1428)
Q Consensus 1131 ---------~gl---~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs 1198 (1428)
+|. +..+...+...+..+...+.++.....+.+|+.++++.++|...... ...+..|.|+|+||+
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~---~~~~~~~~I~~~nvs 458 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKT---DPGKLSGAIEVDRVT 458 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcC---CCCCCCceEEEEEEE
Confidence 222 22344455667778888999999999999999999987766432111 112346789999999
Q ss_pred EEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccc
Q 000553 1199 MRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1278 (1428)
Q Consensus 1199 ~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l 1278 (1428)
|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||++
T Consensus 459 f~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 538 (686)
T TIGR03797 459 FRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL 538 (686)
T ss_pred EEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc
Confidence 99986667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccC
Q 000553 1279 FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356 (1428)
Q Consensus 1279 f~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~ 1356 (1428)
|+|||||||.++++.+|+++++|++.++++++++++ |+||.+||+|.+||||||||++||||++++|+|||||||||+
T Consensus 539 f~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~ 618 (686)
T TIGR03797 539 MSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSA 618 (686)
T ss_pred CcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 999999999988778999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000553 1357 VDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425 (1428)
Q Consensus 1357 lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~ 1425 (1428)
||++||+.|++.|++. ++|+|+||||++++..||||+|||+|+|+|.|+|+||+++ +|.|++|++.
T Consensus 619 LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 619 LDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHh
Confidence 9999999999999886 6899999999999999999999999999999999999985 5799999975
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-73 Score=734.74 Aligned_cols=513 Identities=22% Similarity=0.319 Sum_probs=414.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000553 907 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986 (1428)
Q Consensus 907 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 986 (1428)
..++..+.....+++.+...|.....+.......+...++++.++..++.+++.++....+.+...+++.++++++++.|
T Consensus 162 ~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~ 241 (710)
T TIGR03796 162 AGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLP 241 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444555555566666655532111111112233444555566677888888999999999999999999999999999
Q ss_pred ccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1066 (1428)
Q Consensus 987 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l 1066 (1428)
++||++.++|++++|++.| +.+.+.+...+...+..++.+++.++++++.+|+++++++..++++..+...+.+..+..
T Consensus 242 ~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~ 320 (710)
T TIGR03796 242 VRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDA 320 (710)
T ss_pred HHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 567777777777777777777777777778888776665555444444444444444444
Q ss_pred HHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH
Q 000553 1067 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL------------------SLR 1128 (1428)
Q Consensus 1067 ~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl------------------~~~ 1128 (1428)
.+......+...+++.|+++|+.+||++|+|+.+.+++.+..++..+..+.......|. +..
T Consensus 321 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~ 400 (710)
T TIGR03796 321 NRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGL 400 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556678899999999999999999999999998877666555544332222211 111
Q ss_pred H------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccC----C-CCCCCCCCCccEEE
Q 000553 1129 L------QVGL---ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGY----Q-SLSPDWPFQGLIEF 1194 (1428)
Q Consensus 1129 l------~~gl---~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~----~-~~~~~wp~~g~I~f 1194 (1428)
+ .+|. +..+...+...+..+...+.++.....+++|+.++++.++|..... . ...+.++.+|.|+|
T Consensus 401 ~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~ 480 (710)
T TIGR03796 401 RVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVEL 480 (710)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEE
Confidence 1 0222 2334455666778888899999999999999999998877653221 0 01111345689999
Q ss_pred EEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeC
Q 000553 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1274 (1428)
Q Consensus 1195 ~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1274 (1428)
+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||
T Consensus 481 ~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 481 RNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred EEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 99999998766789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000553 1275 SPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351 (1428)
Q Consensus 1275 dp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLD 1351 (1428)
||++|+|||||||.+++ ..+|++++++++.++++++++++ |+||.++|+|.+||||||||++||||++++|+|||||
T Consensus 561 ~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLD 640 (710)
T TIGR03796 561 DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD 640 (710)
T ss_pred CChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 99999999999998875 57899999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000553 1352 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1423 (1428)
Q Consensus 1352 EaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~ 1423 (1428)
||||+||++||+.|.+.|++ .++|+|+||||++++..||||+|||+|+|+|.|+|+||+++ ++.|++|+
T Consensus 641 EptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 641 EATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred CccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 99999999999999999987 58999999999999999999999999999999999999985 56899987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-72 Score=730.23 Aligned_cols=533 Identities=26% Similarity=0.373 Sum_probs=417.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1428)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 965 (1428)
+..+..|++...+.. ...++..++..++....+++++.+.|.............+..+++++.++..++.+++.++...
T Consensus 144 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (708)
T TIGR01193 144 LLKFIPLITRQKKLI-VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNV 222 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444554333322 2233445555566666777888777643211111111223334445556667788888888999
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000553 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1428)
Q Consensus 966 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1045 (1428)
.+.+...+++.++++++++.|+.||++.++|++++|++ |.+.+.+.+...+...+..++.++..++++.+.+|.+++++
T Consensus 223 ~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 301 (708)
T TIGR01193 223 LGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLS 301 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999998 88888776665555555555555555566666666655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000553 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS--- 1122 (1428)
Q Consensus 1046 ~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~--- 1122 (1428)
+..++++..+...+.+..++..+......+...+++.|+++|+.|||+||.|+.+.+++.+..+...+..+......
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (708)
T TIGR01193 302 LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQ 381 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333333344444444444555566677889999999999999999999999988877766555443322111
Q ss_pred ---------------HHHHHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccc
Q 000553 1123 ---------------LWLSLRLQ------VGL---ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1178 (1428)
Q Consensus 1123 ---------------~wl~~~l~------~gl---~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~ 1178 (1428)
.|++..+- +|. +..+...+...+..+...+.++.....+++|+.++++.|+|....
T Consensus 382 ~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 461 (708)
T TIGR01193 382 QAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK 461 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 11111111 222 233445566777888889999999999999999999887765322
Q ss_pred CCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC
Q 000553 1179 YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII 1258 (1428)
Q Consensus 1179 ~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~ 1258 (1428)
. .....++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||+|++
T Consensus 462 ~-~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 462 K-KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK 539 (708)
T ss_pred c-cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHH
Confidence 1 112234557899999999999743 57999999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHhcceEEEeCCccccCCcHHHhcCcC--CCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHH
Q 000553 1259 NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1259 ~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~--~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQr 1334 (1428)
+++.+++|++|+||||||++|+|||||||.++ ...+|++++++++.++++++++++ ||||.++|+|.+||||||||
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQR 619 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619 (708)
T ss_pred HcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999987 357899999999999999999998 99999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhcc
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
++||||++++|+|||||||||+||++|++.+++.|++. +++|+|+||||++++..||+|+||++|+++|.|+|+||+++
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999999874 78999999999999999999999999999999999999986
Q ss_pred CCcHHHHHHH
Q 000553 1415 ECSVFSSFVR 1424 (1428)
Q Consensus 1415 ~~s~f~~l~~ 1424 (1428)
+|.|++|++
T Consensus 699 -~~~y~~l~~ 707 (708)
T TIGR01193 699 -NGFYASLIH 707 (708)
T ss_pred -CCcHHHHhh
Confidence 579999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-72 Score=712.23 Aligned_cols=516 Identities=24% Similarity=0.366 Sum_probs=412.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000553 904 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSF---YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLT 980 (1428)
Q Consensus 904 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~---~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~ 980 (1428)
.+++.++........++++....+....... ..... ++.+++++.++..++.+++.+.....+.+...+++.++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 106 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGN-LPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMD 106 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666677777777664211111 11111 1222344444556667777778888899999999999999
Q ss_pred cccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 981 KIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYR 1060 (1428)
Q Consensus 981 ~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~ 1060 (1428)
++++.|.++|+..+.|++++|+++|++.+++.+...+..++..+..+++.++++.+.+|++.++++..+.+...+...+.
T Consensus 107 ~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~ 186 (592)
T PRK10790 107 AALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQ 186 (592)
T ss_pred HHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888888777777777777777655433222221222222222
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 000553 1061 STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL----------------- 1123 (1428)
Q Consensus 1061 ~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 1123 (1428)
+..+...+......+....++.|+++|+.+||+||.++++.+++.+..+...+..+.......
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (592)
T PRK10790 187 RYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCG 266 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333334556778999999999999999999999998888776655544332211111
Q ss_pred ---HHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEE
Q 000553 1124 ---WLSLRLQ----VG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1193 (1428)
Q Consensus 1124 ---wl~~~l~----~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~ 1193 (1428)
|.+..+. +| ..+.+...+...+..+...+.++++...+.+|+.++++.++++.... ..++..+.|+
T Consensus 267 ~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~~i~ 342 (592)
T PRK10790 267 LLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND----DRPLQSGRID 342 (592)
T ss_pred HHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC----ccCCCCCeEE
Confidence 1111000 12 22334445667778888899999999999999999998765432111 1233457899
Q ss_pred EEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEe
Q 000553 1194 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1273 (1428)
Q Consensus 1194 f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~Vp 1273 (1428)
|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.+|++|+|||
T Consensus 343 ~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~ 421 (592)
T PRK10790 343 IDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421 (592)
T ss_pred EEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEc
Confidence 99999999754 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000553 1274 QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351 (1428)
Q Consensus 1274 Qdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLD 1351 (1428)
|||.+|+||||+||.+++..+|++++++++++|++++++.+ ||||.++|+|.+||||||||++||||++++|+|||||
T Consensus 422 Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlD 501 (592)
T PRK10790 422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD 501 (592)
T ss_pred cCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99999999999999999888999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000553 1352 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1352 EaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+||++++ +.|++|++.+
T Consensus 502 Epts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~-~~y~~l~~~~ 575 (592)
T PRK10790 502 EATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ-GRYWQMYQLQ 575 (592)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC-CHHHHHHHHH
Confidence 9999999999999999999988899999999999999999999999999999999999999875 7999999754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-74 Score=720.81 Aligned_cols=489 Identities=23% Similarity=0.331 Sum_probs=406.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHH
Q 000553 937 STSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1016 (1428)
Q Consensus 937 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~ 1016 (1428)
....+...|..+++...+..++...++.+.+.|...+++.+.+++++|++++|||.+..|++..|++.|++.+++.+...
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geK 148 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEK 148 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHH
Confidence 34556777788888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCc
Q 000553 1017 LNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKS 1096 (1428)
Q Consensus 1017 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~ 1096 (1428)
+..++..+...++.+++.++..|.+.++++++..+.......+.+..-.....+..+.+.--+...|++.+++|+.+|+-
T Consensus 149 vg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~g 228 (1228)
T KOG0055|consen 149 VGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNG 228 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 99999998888888888888888776655544433333222232222222222333334445678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHH------HH---HHHHHHHHHHHHHHHHH
Q 000553 1097 EDYFMAKFKEHVVLYQRTSYSEL------------------TASLWLSLRLQ------VG---LALSYAAPIVSLLGNFL 1149 (1428)
Q Consensus 1097 e~~~~~~~~~~~~~~~~~~~~~~------------------~~~~wl~~~l~------~g---l~l~~~~~~~~~l~~~i 1149 (1428)
|+...++|.+.++...+...... ....|++..+- .| ..+...+.-...++...
T Consensus 229 q~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~ 308 (1228)
T KOG0055|consen 229 EKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQAS 308 (1228)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccc
Confidence 99999999999998888754432 22233332221 00 00111122223455556
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCC-CccceeeeEEEeCCcEEEEECCC
Q 000553 1150 SSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRT 1228 (1428)
Q Consensus 1150 ~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vL~~is~~I~~GekvgIvGrT 1228 (1428)
..+..+.+...|..++.+.++-.++............-.+|.|+|+||+|+||... .++|+|+||+|++||.||+||+|
T Consensus 309 p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~S 388 (1228)
T KOG0055|consen 309 PHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPS 388 (1228)
T ss_pred cchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCC
Confidence 66777788889999999998765543211111112223579999999999998553 37999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCC-CCChHHHHHHHHHccH
Q 000553 1229 GAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHV 1307 (1428)
Q Consensus 1229 GSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l 1307 (1428)
||||||++++|.|+|+|++|+|+|||.|+++++.++||++||+|.|||+||++||+|||.++. ..+++|+.+|++.++.
T Consensus 389 GsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana 468 (1228)
T KOG0055|consen 389 GSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANA 468 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccH
Confidence 999999999999999999999999999999999999999999999999999999999999887 4689999999999999
Q ss_pred HHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccCh
Q 000553 1308 KEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRI 1385 (1428)
Q Consensus 1308 ~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl 1385 (1428)
++++..+ |+||.+||+|..||||||||+||||||+|+|+|||||||||+||+++|+.+|++|++..+|+|.|+|||||
T Consensus 469 ~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRL 548 (1228)
T KOG0055|consen 469 HDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRL 548 (1228)
T ss_pred HHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeeh
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000553 1386 STVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1386 ~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
+||+++|+|+||++|+|+|.|+|+||++++ |.|++|++.+
T Consensus 549 StIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 549 STIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQ 588 (1228)
T ss_pred hhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHH
Confidence 999999999999999999999999999987 8999999865
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-71 Score=707.75 Aligned_cols=517 Identities=25% Similarity=0.361 Sum_probs=417.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000553 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1428)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1428)
++.++..++....+++++.+.+.............+...++++.++..++.+++.+...+.+.+....++.++++++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 111 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444445556666655553221111111111222333455666677777777788888999999999999999999
Q ss_pred CccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1428)
Q Consensus 986 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~ 1065 (1428)
|..+|+....|++++|+++|++.+...+...+..++..++.+++.++++.+.+|+++++++..++++..+.....+..++
T Consensus 112 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~ 191 (582)
T PRK11176 112 PVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRN 191 (582)
T ss_pred CHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888888888888888877777776655444444433333333333344
Q ss_pred HHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 000553 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ--------------- 1130 (1428)
Q Consensus 1066 l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~--------------- 1130 (1428)
..+......+.+.+++.|.++|+.+||+|+.++.+.+++.+..+...+..........+.....+
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 271 (582)
T PRK11176 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455667889999999999999999999999999988887776665443322222111110
Q ss_pred ---------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEE
Q 000553 1131 ---------VG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVT 1198 (1428)
Q Consensus 1131 ---------~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs 1198 (1428)
+| .++.+...+...+..+...+.++.....+.+|+.++.+.+++...+.. ...|..+.|+|+||+
T Consensus 272 ~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~---~~~~~~~~i~~~~vs 348 (582)
T PRK11176 272 FPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR---VIERAKGDIEFRNVT 348 (582)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc---CCCCCCCeEEEEEEE
Confidence 22 234455566777888889999999999999999999987665322111 122445789999999
Q ss_pred EEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccc
Q 000553 1199 MRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1278 (1428)
Q Consensus 1199 ~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l 1278 (1428)
|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|++||+|+++++.+++|++|+||||||++
T Consensus 349 f~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T PRK11176 349 FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428 (582)
T ss_pred EecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee
Confidence 99987667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHhcCcCC--CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccc
Q 000553 1279 FEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354 (1428)
Q Consensus 1279 f~gTIR~NLdp~~--~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaT 1354 (1428)
|+|||||||..+. .++|++++++++.++++++++++ ||||.+||+|.+||||||||++||||++++|+||||||||
T Consensus 429 f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt 508 (582)
T PRK11176 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_pred ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 9999999998753 47899999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000553 1355 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1355 S~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
|+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|++++ +.|++|++.+
T Consensus 509 saLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~-~~y~~l~~~~ 579 (582)
T PRK11176 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQLHKMQ 579 (582)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCC-ChHHHHHHHH
Confidence 9999999999999999988899999999999999999999999999999999999999865 6999999753
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-71 Score=714.96 Aligned_cols=507 Identities=24% Similarity=0.345 Sum_probs=404.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000553 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1428)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1428)
++.++..++....++.++..+|.............+..+++++.++..++.+++.++....+.+...+++..+++++++.
T Consensus 154 ~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l 233 (694)
T TIGR03375 154 IASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGL 233 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444555556666666666553211111111122233444455567778888889999999999999999999999999
Q ss_pred CccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1428)
Q Consensus 986 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~ 1065 (1428)
|++| ++.++|++++|+ +|++.+.+.+...+...+..++.++..++++.+.+|+++++.+..++++..+..++.+..++
T Consensus 234 ~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 311 (694)
T TIGR03375 234 RMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSR 311 (694)
T ss_pred Cccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 788999999999 79999999887776666666666666666666777766554433333333333333333334
Q ss_pred HHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH
Q 000553 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL------------------WLSL 1127 (1428)
Q Consensus 1066 l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~------------------wl~~ 1127 (1428)
..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.....+. |++.
T Consensus 312 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~ 391 (694)
T TIGR03375 312 LAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445666778999999999999999999999999998887776555444322211 1111
Q ss_pred HHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEE
Q 000553 1128 RLQ------VG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVT 1198 (1428)
Q Consensus 1128 ~l~------~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs 1198 (1428)
.+- +| .++.+...+...+..+...+.++.....+++|+.++++.++|...... .....+..|.|+|+||+
T Consensus 392 ~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~-~~~~~~~~~~I~~~~vs 470 (694)
T TIGR03375 392 YLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR-FLHRPRLQGEIEFRNVS 470 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CCCCCCccceEEEEEEE
Confidence 110 22 223344556677788888999999999999999999988776432111 11112346789999999
Q ss_pred EEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccc
Q 000553 1199 MRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1278 (1428)
Q Consensus 1199 ~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l 1278 (1428)
|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+++++|||||++
T Consensus 471 f~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l 550 (694)
T TIGR03375 471 FAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL 550 (694)
T ss_pred EEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhh
Confidence 99986667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecccc
Q 000553 1279 FEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355 (1428)
Q Consensus 1279 f~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS 1355 (1428)
|+|||||||.+++. .+|++++++++.++++++++++ |+||.++|+|.+||||||||++||||++++|+|||||||||
T Consensus 551 f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts 630 (694)
T TIGR03375 551 FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTS 630 (694)
T ss_pred hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 99999999998865 7899999999999999999998 99999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccC
Q 000553 1356 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1356 ~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
+||++|++.|++.|++..+++|+|+||||++++..||||+||++|+++|.|+|+||+++.
T Consensus 631 ~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~~ 690 (694)
T TIGR03375 631 AMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEAL 690 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHHh
Confidence 999999999999999988999999999999999999999999999999999999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=695.09 Aligned_cols=478 Identities=22% Similarity=0.307 Sum_probs=393.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHH
Q 000553 945 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1024 (1428)
Q Consensus 945 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~ 1024 (1428)
+.++.++..++.++..+.....+.+...+++.++++++++.|+.+|++.++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777888899999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHH
Q 000553 1025 VGLLGIAVVLSYVQVFFLLLLVPFW-FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1103 (1428)
Q Consensus 1025 ~~~l~~~~~~~~~~~~~~~~~~p~~-~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~ 1103 (1428)
+.+++.++++++.+|.++++++..+ +++..+..++.+..+...+....+.+.+.+.+.|+++|+++||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 8888888888888887765443222 222222233334434444444556677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHH---HH-HHHHHHHHHHHHHHHHHH
Q 000553 1104 FKEHVVLYQRTSYSELTASLWLSLRLQ-----------------------VGLALS---YA-APIVSLLGNFLSSFTETE 1156 (1428)
Q Consensus 1104 ~~~~~~~~~~~~~~~~~~~~wl~~~l~-----------------------~gl~l~---~~-~~~~~~l~~~i~~~~~~e 1156 (1428)
+.+..++..+..+.......+.....+ +|..+. |. ......+..+...+.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888776665544332222111111 111111 11 111234455566677888
Q ss_pred HHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHH
Q 000553 1157 KEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL 1236 (1428)
Q Consensus 1157 ~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~ 1236 (1428)
....+.+|+.++++.++|.......+ ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~ 383 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHH
Confidence 88999999999998776532111111 1234578999999999976556799999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHh-C
Q 000553 1237 NALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEA-V 1314 (1428)
Q Consensus 1237 ~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~-l 1314 (1428)
++|.|+++|++|+|++||+|+++++.+++|++|++|||||++|+|||||||..+. ..+|++++++++++++++++++ .
T Consensus 384 ~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~ 463 (574)
T PRK11160 384 QLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDK 463 (574)
T ss_pred HHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCcc
Confidence 9999999999999999999999999999999999999999999999999998765 4689999999999999999885 4
Q ss_pred CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEE
Q 000553 1315 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEI 1394 (1428)
Q Consensus 1315 gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI 1394 (1428)
||||.+||+|.+||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|
T Consensus 464 GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i 543 (574)
T PRK11160 464 GLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRI 543 (574)
T ss_pred ccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred EEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000553 1395 LILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425 (1428)
Q Consensus 1395 ~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~ 1425 (1428)
++|++|+++|.|+|+||+++ +|.|++|++.
T Consensus 544 ~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred EEEeCCeEEEeCCHHHHHhc-CcHHHHHHhh
Confidence 99999999999999999986 5799999874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-70 Score=681.30 Aligned_cols=543 Identities=23% Similarity=0.286 Sum_probs=469.1
Q ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1428)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1428)
+-++..++-+++.+.-..+..++..++.++.|++.+.++|.+-.+.+......+++++.+..++.+++.....+...+++
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666678888888999999999999999999999999877666777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000553 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 425 (1428)
Q Consensus 348 ~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~ 425 (1428)
.|+...+...+|+|.|++|...++++++|++++.++ |.+.|.+++.. +..+...++-++. +.+++.+-+.-+++++
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~-l~vm~~ys~~L~li~l 300 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIF-LAVMFLYSWKLTLIVL 300 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999885 78888886543 2333334444333 4444455555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 426 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 505 (1428)
Q Consensus 426 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 505 (1428)
+.+++.+.+..++.+.+++..++.++...++.+.+.|.++||++||..+-|+.+..++++.-.+.++...+.........
T Consensus 301 ~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 380 (709)
T COG2274 301 AAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILN 380 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66667777788888999999999999999999999999999999999999999999999988888888888777766665
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhh
Q 000553 506 FFWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1428)
Q Consensus 506 ~~~~~~~~~--~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 583 (1428)
.+......+ +.+++||++.+.++.+|.|+.+++.++.+.+.+|+..+...+..+.++.++.+|+.+.++.|..++...
T Consensus 381 ~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~ 460 (709)
T COG2274 381 TIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK 460 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 555444444 346889999999999999999999999999999999999999999999999999999998875433111
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC
Q 000553 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~ 663 (1428)
... ......+.|+++|++|+|..+++ + +|+|+||+|++||.++|||+||||||||+|+|+|.++|
T Consensus 461 ~~~-----------~~~~~~g~I~~~nvsf~y~~~~~-~---vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 461 TLI-----------HLPKLQGEIEFENVSFRYGPDDP-P---VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred ccc-----------cccccCceEEEEEEEEEeCCCCc-c---hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 000 01245678999999999987532 3 49999999999999999999999999999999999999
Q ss_pred CCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCCCCh-HHHHHHHHHhcchHHHhcccCCCcccccC
Q 000553 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISLMVGGDMAYIGE 729 (1428)
Q Consensus 664 ~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~-~~~~~v~~~c~l~~di~~l~~gd~t~ig~ 729 (1428)
++|+|.++| +|+||+|++.+|+|||+|||.++.+... |+..++++..+.+++|..+|.|++|.+||
T Consensus 526 ~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E 605 (709)
T COG2274 526 QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605 (709)
T ss_pred CCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccc
Confidence 999999987 5999999999999999999999988644 78888888889999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCC
Q 000553 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 809 (1428)
Q Consensus 730 ~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G 809 (1428)
+|.+||||||||++||||++++|+|+||||||||||+++++.|.+++ .. ...++|+|+||||++.+..||+|+||++|
T Consensus 606 ~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L-~~-~~~~~T~I~IaHRl~ti~~adrIiVl~~G 683 (709)
T COG2274 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL-LQ-ILQGRTVIIIAHRLSTIRSADRIIVLDQG 683 (709)
T ss_pred CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH-HH-HhcCCeEEEEEccchHhhhccEEEEccCC
Confidence 99999999999999999999999999999999999999999999984 33 56789999999999999999999999999
Q ss_pred eEEEecChHHHHhccccCcc
Q 000553 810 QVKWIGSSADLAVSLYSGFW 829 (1428)
Q Consensus 810 ~i~~~g~~~el~~~~~~~~~ 829 (1428)
+|+++|+++|+++..+.+.+
T Consensus 684 kiv~~gs~~ell~~~g~y~~ 703 (709)
T COG2274 684 KIVEQGSHEELLAQGGLYAR 703 (709)
T ss_pred ceeccCCHHHHHHhcChHHH
Confidence 99999999999987665543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-70 Score=694.42 Aligned_cols=517 Identities=25% Similarity=0.381 Sum_probs=433.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000553 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1428)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 985 (1428)
++.++..++..+.+++++...+.............+..+++++.++..++.+++.++....+.+....+++.+++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~ 100 (571)
T TIGR02203 21 VAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGL 100 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455555555566666655543211111111223344566677777888888888999999999999999999999999
Q ss_pred CccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1428)
Q Consensus 986 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~ 1065 (1428)
|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++.+.+|+++++++.+.++...+...+.+..++
T Consensus 101 ~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~ 180 (571)
T TIGR02203 101 PVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRR 180 (571)
T ss_pred CHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888888888777766666666666666665666
Q ss_pred HHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 000553 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ--------------- 1130 (1428)
Q Consensus 1066 l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~--------------- 1130 (1428)
..+......+...+.+.|+++|+.+||+++.++++.+++.+..+...+..........+.....+
T Consensus 181 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 260 (571)
T TIGR02203 181 ISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIAL 260 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677788899999999999999999999999999998888877766554433332221111
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEE
Q 000553 1131 ------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVT 1198 (1428)
Q Consensus 1131 ------------~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs 1198 (1428)
+..++.++..+...+..+...+.++.....+.+|+.++++.+++...... +. -+..+.|+++||+
T Consensus 261 ~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~--~~~~~~i~~~~v~ 337 (571)
T TIGR02203 261 FQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-AI--ERARGDVEFRNVT 337 (571)
T ss_pred HHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CC--CCCCCeEEEEEEE
Confidence 12223445566677778888899999999999999999987665422111 11 1245789999999
Q ss_pred EEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccc
Q 000553 1199 MRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1278 (1428)
Q Consensus 1199 ~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l 1278 (1428)
|+|++..+++|+|+||+|+|||+|+|+|+||||||||+++|+|+++|++|+|++||+|+++++.+++|++++||||||++
T Consensus 338 f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 417 (571)
T TIGR02203 338 FRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL 417 (571)
T ss_pred EEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc
Confidence 99986556899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHhcCcCC--CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccc
Q 000553 1279 FEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354 (1428)
Q Consensus 1279 f~gTIR~NLdp~~--~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaT 1354 (1428)
|+|||||||..++ +.+|++++++++++++++++.++ ||||.++|+|.+||||||||+|||||++++|+|++|||||
T Consensus 418 f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpt 497 (571)
T TIGR02203 418 FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT 497 (571)
T ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 9999999998875 57899999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000553 1355 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1355 S~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
|+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|+++++++ +.|+++++.+
T Consensus 498 s~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~~~~~ 568 (571)
T TIGR02203 498 SALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN-GLYAQLHNMQ 568 (571)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC-CHHHHHHHHh
Confidence 9999999999999999988999999999999999999999999999999999999999864 6899988753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=634.91 Aligned_cols=471 Identities=23% Similarity=0.363 Sum_probs=398.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHH
Q 000553 949 CMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLL 1028 (1428)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l 1028 (1428)
++...+..++--+.......+.-.+++.++|+++...+..-..+-..|+++||+..|++.+|+..-..+...+..++..+
T Consensus 68 aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~ 147 (573)
T COG4987 68 AILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIA 147 (573)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHH
Confidence 34444444444455566777888899999999999999889999999999999999999999999999999998888888
Q ss_pred HHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHH
Q 000553 1029 GIAVVLSYVQVFFLLLLVPF-WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1107 (1428)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~ 1107 (1428)
++.+.+++.+|++++.+... ++....+...+.+..|...+--...+..++++|.|.+.|....+.||.++.|.+.+.+.
T Consensus 148 ~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~ 227 (573)
T COG4987 148 VVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227 (573)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHH
Confidence 88888888887766544333 33334444455555666666666778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------------------------HHHHHHHHHHHH-HHHHHHHHHH
Q 000553 1108 VVLYQRTSYSELTASLWLSLRLQ--VGLALSY-------------------------AAPIVSLLGNFL-SSFTETEKEM 1159 (1428)
Q Consensus 1108 ~~~~~~~~~~~~~~~~wl~~~l~--~gl~l~~-------------------------~~~~~~~l~~~i-~~~~~~e~~~ 1159 (1428)
.+...+.......+..|-...+. .|+.+.+ ++.....+.-+. ..+.++....
T Consensus 228 e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~ 307 (573)
T COG4987 228 EASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVI 307 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHH
Confidence 88888888887777777665554 1222111 111122222233 4456777788
Q ss_pred HHHHHHHhhhcCCccccccCCCCCCCCCCCc-cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHH
Q 000553 1160 VSLERVLEYMDVPQEELCGYQSLSPDWPFQG-LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1238 (1428)
Q Consensus 1160 ~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g-~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~ 1238 (1428)
.|..|+.+..+.++|...+.. .-|..+ .++++||+|+|+++.+++|+|+||++++||||||+|||||||||++++
T Consensus 308 ~Sa~Rl~~i~~q~~e~~~~~~----~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqL 383 (573)
T COG4987 308 ASARRLNDILDQKPEVTFPDE----QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQL 383 (573)
T ss_pred HHHHHHhhhccCCcccCCCcc----ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHH
Confidence 899999999888776532211 112222 799999999999888899999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--C
Q 000553 1239 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--G 1315 (1428)
Q Consensus 1239 L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--g 1315 (1428)
|.|.++|++|+|.++|.+++.++.+++|+.|++++|.+++|+||+|+||...+ ..||||+|++++++||.+++++. |
T Consensus 384 l~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~g 463 (573)
T COG4987 384 LAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDG 463 (573)
T ss_pred HHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhh
Confidence 99999999999999999999999999999999999999999999999997765 36999999999999999999999 9
Q ss_pred CchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEE
Q 000553 1316 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEIL 1395 (1428)
Q Consensus 1316 Ldt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~ 1395 (1428)
|+|.+||+|.+||||||||++|||+||++.+++||||||.+||++||+.|.+.|.+..+|+|+|+||||+..+..||||+
T Consensus 464 l~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIi 543 (573)
T COG4987 464 LNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRII 543 (573)
T ss_pred hhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEecChhHHhccCCcHHHHHHH
Q 000553 1396 ILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424 (1428)
Q Consensus 1396 Vl~~G~ive~g~p~eLl~~~~s~f~~l~~ 1424 (1428)
|||+|+++|+|+|.+|+++ +|.|++|++
T Consensus 544 vl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 544 VLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred EEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 9999999999999999995 579999976
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-70 Score=652.92 Aligned_cols=535 Identities=20% Similarity=0.234 Sum_probs=437.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-GSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 350 (1428)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 350 (1428)
.+.+..||.+..+.++.++.......-|.++.+++|.+.. .+....-.-....+..++++.+++...+.+.....+.++
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888888888999999999999999999999876 333222223455666777888888888888888889999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHH
Q 000553 351 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVAL-YLLYTQVKFAFVSGLAIT 428 (1428)
Q Consensus 351 r~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~w~~p~~i~i~~-~lL~~~lg~a~l~g~~v~ 428 (1428)
-..+...+|++.++...+.+++..+|++++.++.|++.+.+.+ .++.+..-+.++...++ +|++..+-++.+. ++++
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~-~i~~ 298 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVT-LIVV 298 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH-HHHh
Confidence 9999999999999999999999999999999999999998855 45666555666654443 3444444444332 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1428)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1428)
.+.+.+..+++++.++..++..++..+-.+...|.|++||+||+|+-|+...++..+.=++-++..+|......+....+
T Consensus 299 P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~ 378 (716)
T KOG0058|consen 299 PIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGST 378 (716)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHH
Confidence 33344556777777788888888888888999999999999999999988777776654444444444443333332222
Q ss_pred HHH--HHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhc
Q 000553 509 ATT--PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1428)
Q Consensus 509 ~~~--~~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 586 (1428)
... ...++++.+|.|++.++.||++...+++.+-..+..++..+...++.++++..+-+|+.+|++.++.-+... .
T Consensus 379 ~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G--~ 456 (716)
T KOG0058|consen 379 NLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTG--T 456 (716)
T ss_pred HHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCC--c
Confidence 222 234567788999999999999999999999999999999999999999999999999999997654322110 0
Q ss_pred CCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCe
Q 000553 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1428)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G 666 (1428)
..| ....+.|+|+|++|+||.+++. ++|+|+||+|+|||.+|+||||||||||+.++|+.+|+|++|
T Consensus 457 ~~p----------~~~~G~IeF~~VsFaYP~Rp~~---~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 457 LAP----------DHLQGVIEFEDVSFAYPTRPDV---PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred ccc----------ccccceEEEEEeeeecCCCCCc---hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 011 1345789999999999987554 459999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
+|.+|| +||+|.|+|.||++||+|||.+|.+ .++++..++.+.+.-++.|..+|+|++|.|||+|.
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 999998 5999999999999999999999976 56788999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEE
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 812 (1428)
.|||||||||||||||++||.||||||+|||||++.+.. .+.++.. ..+++|||+|+||++.+++||+|+++++|+++
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~l-Vq~aL~~-~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYL-VQEALDR-LMQGRTVLVIAHRLSTVRHADQIVVIDKGRVV 681 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHH-HHHHHHH-hhcCCeEEEEehhhhHhhhccEEEEEcCCeEE
Confidence 999999999999999999999999999999999997654 4444544 67789999999999999999999999999999
Q ss_pred EecChHHHHhcc
Q 000553 813 WIGSSADLAVSL 824 (1428)
Q Consensus 813 ~~g~~~el~~~~ 824 (1428)
|.|+|+|+++..
T Consensus 682 E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 682 EMGTHDELLSKP 693 (716)
T ss_pred ecccHHHHhhCc
Confidence 999999999876
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-72 Score=630.05 Aligned_cols=467 Identities=25% Similarity=0.444 Sum_probs=389.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 000553 952 NSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIA 1031 (1428)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~ 1031 (1428)
++++..+|+|+......-..+.+--.+++++....++|.-...+|+.+.-+.+..+.+. .+.....+..-.+.-+...+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 35667778888888888899999999999999999999999999999888877766665 22222222222222222222
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHH
Q 000553 1032 VV-LSYVQVFFLLLLVPFWFIYSKLQ----FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKE 1106 (1428)
Q Consensus 1032 ~~-~~~~~~~~~~~~~p~~~~~~~i~----~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~ 1106 (1428)
+. .....+|+.+++...+..|..+. ..--+..|.+...+.+++ +.-.+++-+.+|+|-|+.|++..++|.+
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYre 426 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYRE 426 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHH
Confidence 22 22346777776666655554322 222223333333333333 4557899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1107 HVVLYQRTSYSELTASLWLSLRLQ------------------------V---GLALSYAAPIVSLLGNFLSSFTETEKEM 1159 (1428)
Q Consensus 1107 ~~~~~~~~~~~~~~~~~wl~~~l~------------------------~---gl~l~~~~~~~~~l~~~i~~~~~~e~~~ 1159 (1428)
.++.+|+..++....-..+..... + .+..+|.+++...++++-..+..++++.
T Consensus 427 Ail~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nf 506 (790)
T KOG0056|consen 427 AILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNF 506 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence 999999988776544333332211 2 2567899999999999999999999999
Q ss_pred HHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHH
Q 000553 1160 VSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1239 (1428)
Q Consensus 1160 ~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L 1239 (1428)
.-+|++.+.++.++|-.+.+..+|-. -.+|.|+|+||+|.|.++ +|||+||||+++||+.||+|||||+||||++++|
T Consensus 507 iDmEnmfdllkee~eVvd~P~a~pl~-~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlL 584 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPEVVDLPGAPPLK-VTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLL 584 (790)
T ss_pred hhHHHHHHHhhcCchhhcCCCCCCcc-ccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHH
Confidence 99999999998877754333333322 257999999999999876 5799999999999999999999999999999999
Q ss_pred hcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CC
Q 000553 1240 FRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GL 1316 (1428)
Q Consensus 1240 ~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gL 1316 (1428)
+|+++.++|+|+|||+||+++..+.||++||+||||.+||++||..||.+.. ..+|||+.+|.+.++++|.|-++ |+
T Consensus 585 fRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY 664 (790)
T KOG0056|consen 585 FRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGY 664 (790)
T ss_pred HHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhh
Confidence 9999999999999999999999999999999999999999999999998875 46899999999999999999998 99
Q ss_pred chhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEE
Q 000553 1317 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILI 1396 (1428)
Q Consensus 1317 dt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~V 1396 (1428)
+|+|||+|-.||||||||+++||++||+|.|++||||||+||..||+.||.++.+.++++|.|+|||||+||.++|.|+|
T Consensus 665 ~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILv 744 (790)
T KOG0056|consen 665 NTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILV 744 (790)
T ss_pred hhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000553 1397 LDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425 (1428)
Q Consensus 1397 l~~G~ive~g~p~eLl~~~~s~f~~l~~~ 1425 (1428)
+++|+|+|.|+|+||+++++|.|++||+.
T Consensus 745 i~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 745 ISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 99999999999999999999999999953
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-70 Score=643.15 Aligned_cols=482 Identities=24% Similarity=0.377 Sum_probs=401.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHH
Q 000553 938 TSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFIL 1017 (1428)
Q Consensus 938 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l 1017 (1428)
...+++.++++.++..++...+......++.++...+++.+++++.+.+..+-...|+|++....+..++.++..+...+
T Consensus 39 l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryL 118 (559)
T COG4988 39 LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYL 118 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777788888888888888899999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHhhcchhHHHHHHhhcchHHHH
Q 000553 1018 NILLANFVGLLGIAVVLSYVQVF---FLLLLVPFWFIYSKL-QFFYR-STSRELRRLDSVSRSPIYASFTETLNGSSTIR 1092 (1428)
Q Consensus 1018 ~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~p~~~~~~~i-~~~y~-~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIr 1092 (1428)
...+.+.+..+.+++.+++.+|. ++++..|++.++..+ ...-. ...++. .+...+.+||.+.++|+.|+|
T Consensus 119 Pq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~-----~~~~~ls~~FLD~LrGL~TLr 193 (559)
T COG4988 119 PQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQF-----SALARLSGHFLDRLRGLETLR 193 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHhcChHHHH
Confidence 88888887777777777766654 445556666655433 22221 222222 333457789999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-------HH-----------------HHHHHH
Q 000553 1093 AFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ----VGLALS-------YA-----------------APIVSL 1144 (1428)
Q Consensus 1093 af~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~----~gl~l~-------~~-----------------~~~~~~ 1144 (1428)
+||..++..++..+.-++..+..+....++.--+..++ .|.++. |. --+..+
T Consensus 194 ~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~P 273 (559)
T COG4988 194 AFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQP 273 (559)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999888877766665555555 111111 11 111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEE
Q 000553 1145 LGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGI 1224 (1428)
Q Consensus 1145 l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgI 1224 (1428)
+..+-..|........+.+.+..+.+.|.+...........|..+.+++.+|++++|+++. ++++|+||+++|||++||
T Consensus 274 lR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~tal 352 (559)
T COG4988 274 LRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTAL 352 (559)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEE
Confidence 3344455666667778899999999887765332222233344455677779999998664 899999999999999999
Q ss_pred ECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCCC-CChHHHHHHHH
Q 000553 1225 VGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLE 1303 (1428)
Q Consensus 1225 vGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~-~~d~ei~~aL~ 1303 (1428)
||+||||||||+++|+|+.+|++|+|.+||+|+.+++.+.+|+++++|||+|++|+|||||||.+++. .+|++|+++++
T Consensus 353 vG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~ 432 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALD 432 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876 68999999999
Q ss_pred HccHHHHHHh-CCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEec
Q 000553 1304 KCHVKEEVEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1382 (1428)
Q Consensus 1304 ~~~l~~~i~~-lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~Ia 1382 (1428)
++++.++++. .||||.+||+|.+|||||+||++||||++++++++++|||||+||.|||+.|++.|.+.++++|||+||
T Consensus 433 ~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~it 512 (559)
T COG4988 433 QAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512 (559)
T ss_pred HhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEE
Confidence 9999999986 499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000553 1383 HRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1383 Hrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
||++.+.++|+|+|||+|+++|.|+|++|.+++ |.|+.|++++
T Consensus 513 Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~-~~y~~l~~~q 555 (559)
T COG4988 513 HRLEDAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQQ 555 (559)
T ss_pred cChHHHhcCCEEEEecCCceeccCCHHHHhhcC-cHHHHHHHHH
Confidence 999999999999999999999999999999865 6999999864
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=701.70 Aligned_cols=515 Identities=23% Similarity=0.345 Sum_probs=410.6
Q ss_pred HHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 000553 908 AILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987 (1428)
Q Consensus 908 ~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~ 987 (1428)
.++..+.....++.++...|..-..........+...++++.++..++.+++.++....+.+...+++.++++++++.|+
T Consensus 148 s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~ 227 (694)
T TIGR01846 148 SLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPL 227 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33444444555666666555321111111122233445556666778888889999999999999999999999999999
Q ss_pred cccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1067 (1428)
Q Consensus 988 ~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~ 1067 (1428)
.||++.++|++++|+ +|++.+.+.+...+..++..++.++..++++++.+|.++++++..++++..+.....+..+...
T Consensus 228 ~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~ 306 (694)
T TIGR01846 228 GYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRV 306 (694)
T ss_pred HHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 6999999888776666665555555556666777776665544333333332222222222222
Q ss_pred HHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
Q 000553 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLW------------------LSLRL 1129 (1428)
Q Consensus 1068 rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w------------------l~~~l 1129 (1428)
+...+..+...+++.|+++|+.+||+||.|+.+.+++.+..++..+..+.....+.+ ++..+
T Consensus 307 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 386 (694)
T TIGR01846 307 EDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHL 386 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 223344556779999999999999999999999999988887776665543322222 21111
Q ss_pred H------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEE
Q 000553 1130 Q------VG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMR 1200 (1428)
Q Consensus 1130 ~------~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~ 1200 (1428)
- +| ....+...+...+..+...+.+++....+.+|+.++++.|+|...... ....+..|.|+|+||+|+
T Consensus 387 v~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~--~~~~~~~~~i~~~~vsf~ 464 (694)
T TIGR01846 387 VIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGL--AALPELRGAITFENIRFR 464 (694)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCC--CCCCCCCCeEEEEEEEEE
Confidence 0 22 223344456667788888999999999999999999988776432111 111123578999999999
Q ss_pred ECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccC
Q 000553 1201 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1280 (1428)
Q Consensus 1201 Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~ 1280 (1428)
|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++||+|+++++.+++|+++++|||||.+|+
T Consensus 465 y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~ 544 (694)
T TIGR01846 465 YAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS 544 (694)
T ss_pred cCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh
Confidence 98766779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCC
Q 000553 1281 GSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357 (1428)
Q Consensus 1281 gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~l 1357 (1428)
|||||||..++ ..+|++++++++.++++++++.+ |+||.++++|.+||||||||++||||++++|+|||||||||+|
T Consensus 545 ~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~L 624 (694)
T TIGR01846 545 RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSAL 624 (694)
T ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 99999998765 47899999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000553 1358 DAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1358 D~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
|++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ +|.|++|++..
T Consensus 625 D~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 625 DYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 999999999999998889999999999999999999999999999999999999986 47999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=687.50 Aligned_cols=533 Identities=19% Similarity=0.188 Sum_probs=418.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 270 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-GSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1428)
Q Consensus 270 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1428)
++...+.+++.++...++.++..++..++|++++.++|.+.. +.+....+.++++++++.++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888999999999999999999999997642 2222223334555666677777888788888889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHhHHHHHHH
Q 000553 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY---LLYTQVKFAFVSG 424 (1428)
Q Consensus 349 ~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~---lL~~~lg~a~l~g 424 (1428)
++...+...+|+|.++++...+.+.++|+++|.+++|++++.+... .+..++...+.+++++. .+.+.+++.+++.
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 172 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGT 172 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888999999999999999998654 45555555444443333 2333344433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000553 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMK----TRSSEVKHLSTRKYL 500 (1428)
Q Consensus 425 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~----~R~~El~~~~~~~~~ 500 (1428)
+++...+..++.++.++..++.++..++..+.+.|.++|+++||.+++|+.+.+++.+ .|+.+.+..+.....
T Consensus 173 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 173 ---APLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233334456778888888999999999999999999999999999999988877744 444444443333223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 501 DAWCVFFWATTPTLFSLFTFGLFALMGHQLDA---------AMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 571 (1428)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~f~~y~~~~~~Lt~---------~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~ 571 (1428)
......+... +. +.++.++.+.+. +.++. ..+|.++.+...+..|+..++..+..+.++.++.+||.+
T Consensus 250 ~~~~~~~~~~-~~-~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFASI-SI-ALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222211 11 122233333333 33443 445666677788899999999999999999999999999
Q ss_pred hhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHH
Q 000553 572 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 651 (1428)
Q Consensus 572 fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKS 651 (1428)
+++.++.++.... ...+ ......|+++|++|.|+++ + ++|+|+||++++|+.++||||||||||
T Consensus 327 ~l~~~~~~~~~~~-~~~~----------~~~~~~i~~~~vsf~~~~~--~---~vL~~i~l~i~~G~~vaIvG~SGsGKS 390 (588)
T PRK11174 327 FLETPLAHPQQGE-KELA----------SNDPVTIEAEDLEILSPDG--K---TLAGPLNFTLPAGQRIALVGPSGAGKT 390 (588)
T ss_pred HHcCCCcccCCCc-cccC----------CCCCceEEEEeeEEeccCC--C---eeeeeeEEEEcCCCEEEEECCCCCCHH
Confidence 9976643211000 0000 0123469999999987642 2 359999999999999999999999999
Q ss_pred HHHHHHHcCccCCCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHh
Q 000553 652 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDIS 717 (1428)
Q Consensus 652 tll~~llG~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~ 717 (1428)
||+++|+|++ |++|+|.++| +|+||||+||+|++||||||.+|++ .+++++.++++.|+++++++
T Consensus 391 TL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~ 469 (588)
T PRK11174 391 SLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLP 469 (588)
T ss_pred HHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHH
Confidence 9999999999 8999999987 5999999999999999999999964 89999999999999999999
Q ss_pred cccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchh
Q 000553 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 797 (1428)
Q Consensus 718 ~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l 797 (1428)
.+|+|++|.+||+|.+|||||||||+||||++++|+|+||||||||||++++++|.+. +.. +.+++|+|+|||+++.+
T Consensus 470 ~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~-~~~~~TvIiItHrl~~i 547 (588)
T PRK11174 470 LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNA-ASRRQTTLMVTHQLEDL 547 (588)
T ss_pred hcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-HhCCCEEEEEecChHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 444 55789999999999999
Q ss_pred hcCCEEEEEeCCeEEEecChHHHHhccccC
Q 000553 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSG 827 (1428)
Q Consensus 798 ~~ad~i~~l~~G~i~~~g~~~el~~~~~~~ 827 (1428)
..||+|++|++|+++++|+++|++++.+.+
T Consensus 548 ~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y 577 (588)
T PRK11174 548 AQWDQIWVMQDGQIVQQGDYAELSQAGGLF 577 (588)
T ss_pred HhCCEEEEEeCCeEeecCCHHHHHhcchHH
Confidence 999999999999999999999998765543
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-68 Score=676.78 Aligned_cols=518 Identities=24% Similarity=0.336 Sum_probs=406.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000553 904 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 983 (1428)
Q Consensus 904 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl 983 (1428)
+++..++..++....++++....|.... ......++.+++++.++..+..++......+...+....+..+++++++
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISG---KGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666667777766653221 1111222233333333333333333444444555555566679999999
Q ss_pred CCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 984 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS 1063 (1428)
Q Consensus 984 ~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~s 1063 (1428)
+.|..+|++.+.|++++|+++|++.+...+...+...+..++..++.++++.+.+|+++++++.+++++..+...+.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877766666666666666666666677777776666555555555666666666
Q ss_pred HHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 000553 1064 RELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL------------------ 1125 (1428)
Q Consensus 1064 r~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl------------------ 1125 (1428)
++..+......+.+.+++.|+++|+.+||+||.++.+.+++.+..+...+..........+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677888899999999999999999999998888887777665543322211111
Q ss_pred HHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEE
Q 000553 1126 SLRL------QVG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQN 1196 (1428)
Q Consensus 1126 ~~~l------~~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~n 1196 (1428)
+..+ .+| .++.++..+...+..+...+.++..+..+.+|+.++.+.+++........+. -+..+.|+|+|
T Consensus 261 g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-~~~~~~I~~~~ 339 (588)
T PRK13657 261 GAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDL-GRVKGAVEFDD 339 (588)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCc-CCCCCeEEEEE
Confidence 1110 022 2234455566677778888888888999999999998765442211111111 12346899999
Q ss_pred EEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCc
Q 000553 1197 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSP 1276 (1428)
Q Consensus 1197 vs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp 1276 (1428)
|+|+|+++ +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||||
T Consensus 340 vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 418 (588)
T PRK13657 340 VSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418 (588)
T ss_pred EEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc
Confidence 99999743 56999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000553 1277 FLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353 (1428)
Q Consensus 1277 ~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEa 1353 (1428)
.+|+|||||||..++ ..+|++++++++.++++++++++ |+||.++++|.+||||||||++||||++++|+|||||||
T Consensus 419 ~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEp 498 (588)
T PRK13657 419 GLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498 (588)
T ss_pred ccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999998774 46899999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000553 1354 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1354 TS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~~ 1427 (1428)
||+||++|++.|.+.|++..+++|+|+||||++.+..||||++|++|+++|.|+|++|+++ ++.|++|+++.+
T Consensus 499 ts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 499 TSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQG 571 (588)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHhh
Confidence 9999999999999999988789999999999999999999999999999999999999986 579999987653
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=679.18 Aligned_cols=519 Identities=24% Similarity=0.386 Sum_probs=411.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000553 907 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986 (1428)
Q Consensus 907 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 986 (1428)
+.++..+.....++.+....+..-..........++.+++++.++..++.+++.++....+.+....++..+++++++.|
T Consensus 26 ~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~ 105 (576)
T TIGR02204 26 ALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLS 105 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34445555555555555544431101111111223334444455556667777788888899999999999999999999
Q ss_pred ccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1066 (1428)
Q Consensus 987 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l 1066 (1428)
.++|+....|++++|+++|++.+++.....+..++..++.+++.++++++..|++.++++...+++..+...+.+..+..
T Consensus 106 ~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~ 185 (576)
T TIGR02204 106 PSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKL 185 (576)
T ss_pred HHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888877777777777777777777665544333333333333333333444
Q ss_pred HHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 000553 1067 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRL----------------- 1129 (1428)
Q Consensus 1067 ~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l----------------- 1129 (1428)
.+.....+....+++.|.++|+++||+|+.++++.+++.+..+...+..........|+....
T Consensus 186 ~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 265 (576)
T TIGR02204 186 SRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAH 265 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666778999999999999999999999988888877765554433222211111110
Q ss_pred -------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEE
Q 000553 1130 -------QVG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTM 1199 (1428)
Q Consensus 1130 -------~~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~ 1199 (1428)
.+| ....+...+...+..+...+.++.....+.+|+.++++.++|........+..+|..+.|+|+||+|
T Consensus 266 ~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f 345 (576)
T TIGR02204 266 DVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNF 345 (576)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEE
Confidence 011 2233445566777888899999999999999999998876542211111112234557899999999
Q ss_pred EECCCC-CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccc
Q 000553 1200 RYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1278 (1428)
Q Consensus 1200 ~Y~~~~-~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l 1278 (1428)
+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|+||||++
T Consensus 346 ~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l 425 (576)
T TIGR02204 346 AYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL 425 (576)
T ss_pred ECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc
Confidence 997543 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecccc
Q 000553 1279 FEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355 (1428)
Q Consensus 1279 f~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS 1355 (1428)
|+|||||||.+++ ..+|++++++++++++.++++.+ |+||.++|+|.+||||||||++||||++++|+|||||||||
T Consensus 426 f~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts 505 (576)
T TIGR02204 426 FAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505 (576)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCccc
Confidence 9999999999865 45789999999999999999998 99999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000553 1356 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1356 ~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
+||.+|++.+.+.+++..+++|+|+||||++.+..||||++|++|+++|.|+|++|+++ ++.|++|++.+
T Consensus 506 ~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 506 ALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575 (576)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHhhc
Confidence 99999999999999998889999999999999999999999999999999999999885 57999998753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-68 Score=671.08 Aligned_cols=476 Identities=20% Similarity=0.263 Sum_probs=375.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000553 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVV--LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 983 (1428)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl 983 (1428)
++.++..++....++.+++.++..... ......+..+ ++++.++..++.++..++....+.+...+++.+++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 97 (529)
T TIGR02868 20 LLGALALGSAVALLGVSAWLISRAAEM--PPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLA 97 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555566666555532111 1111111111 122344556666777777788888999999999999999
Q ss_pred CCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000553 984 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIY-SKLQFFYRST 1062 (1428)
Q Consensus 984 ~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~-~~i~~~y~~~ 1062 (1428)
+.|.+||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.++++++..+.++ .....++.+.
T Consensus 98 ~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 177 (529)
T TIGR02868 98 RLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRA 177 (529)
T ss_pred ccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888888888888888888888888887766554433322 2233344444
Q ss_pred HHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
Q 000553 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL------------------W 1124 (1428)
Q Consensus 1063 sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~------------------w 1124 (1428)
.+...+......+.+.+++.|+++|+++||+|++|+.+.+++.+..++..+.......... |
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (529)
T TIGR02868 178 ARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALW 257 (529)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455667888999999999999999999999999998888777666544322211 1
Q ss_pred HHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCC-CCCCCCCCCccEEE
Q 000553 1125 LSLRL------QVG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQ-SLSPDWPFQGLIEF 1194 (1428)
Q Consensus 1125 l~~~l------~~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~-~~~~~wp~~g~I~f 1194 (1428)
++..+ .+| ..+.++..+...+..+...+.++.....+.+|+.++++.++|...... .+...+|..+.|+|
T Consensus 258 ~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~ 337 (529)
T TIGR02868 258 AGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLEL 337 (529)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEE
Confidence 11110 012 222344455566777777888899999999999999987765322111 11123445678999
Q ss_pred EEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeC
Q 000553 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1274 (1428)
Q Consensus 1195 ~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1274 (1428)
+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|++++ .+++|++++||||
T Consensus 338 ~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q 415 (529)
T TIGR02868 338 RDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQ 415 (529)
T ss_pred EEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEcc
Confidence 9999999754 4699999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000553 1275 SPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351 (1428)
Q Consensus 1275 dp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLD 1351 (1428)
||++|+|||||||.+++ +.+|+++++|++.++++++++++ |+||.+||+|.+||||||||+|||||++++|+|||||
T Consensus 416 ~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD 495 (529)
T TIGR02868 416 DAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 495 (529)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999875 46899999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhcCCcEEEEeccCh
Q 000553 1352 ECTANVDAQTASILQNAISSECKGMTVITIAHRI 1385 (1428)
Q Consensus 1352 EaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl 1385 (1428)
||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 496 E~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 496 EPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-68 Score=614.73 Aligned_cols=477 Identities=23% Similarity=0.366 Sum_probs=370.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHH
Q 000553 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNI 1019 (1428)
Q Consensus 940 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~ 1019 (1428)
.-+..|++..+...++..++.+.+.+...++-+....+.+++.++..+++|....+|.+-+...+....|...+...+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999998888887777777666665555
Q ss_pred HHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhc
Q 000553 1020 LLANFVGLLGIAVVLSY-VQVFFLLLLVPFWFIYSKL----QFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094 (1428)
Q Consensus 1020 ~~~~~~~~l~~~~~~~~-~~~~~~~~~~p~~~~~~~i----~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf 1094 (1428)
++..++.+......+.+ ..+.++++.+.....|..+ ..+--+-.+++. .+....-....|++.+-.+||+|
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N----~Adn~as~~~~dsL~Nye~VKsf 230 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMN----NADNSASRRAYDSLINYEIVKSF 230 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHH----hhhhHHHHHHHHHHhhHHHHHHc
Confidence 55554444333322222 2333333333333333221 111111222222 23333345678999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-----------------------HHHHHHHHHHHHHH
Q 000553 1095 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ----VGL-----------------------ALSYAAPIVSLLGN 1147 (1428)
Q Consensus 1095 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~----~gl-----------------------~l~~~~~~~~~l~~ 1147 (1428)
+.|++..+++...+..+.+......+....+.+-.. +.+ ..+...++...++.
T Consensus 231 NnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~ 310 (591)
T KOG0057|consen 231 NNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNF 310 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHH
Confidence 999999999999998887776554333222222111 111 11122233333344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECC
Q 000553 1148 FLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGR 1227 (1428)
Q Consensus 1148 ~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGr 1227 (1428)
+-..+.++-.++.-.+-.....+ .+...... +.+.-+.+|.|+|+||+|.|+++ +++|+|+||+|++||||||||+
T Consensus 311 Lg~vyr~~~q~l~Dm~~~~~l~~--~~~~i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~ 386 (591)
T KOG0057|consen 311 LGSVYRELRQALTDMRTLFILLE--VDEDIQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGS 386 (591)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhh--hhhhhhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECC
Confidence 44444444444443333332211 11111111 22223456789999999999865 5699999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCCC-CChHHHHHHHHHcc
Q 000553 1228 TGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCH 1306 (1428)
Q Consensus 1228 TGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~-~~d~ei~~aL~~~~ 1306 (1428)
|||||||++++|+|+++ .+|+|+|||+||++++++.+|+.||+||||..||++||-+||.+++. .+|||+.+++++++
T Consensus 387 nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~ 465 (591)
T KOG0057|consen 387 NGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAG 465 (591)
T ss_pred CCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcC
Confidence 99999999999999999 99999999999999999999999999999999999999999998875 68999999999999
Q ss_pred HHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q 000553 1307 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1384 (1428)
Q Consensus 1307 l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHr 1384 (1428)
++|.+.++ |++|.+||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|++...++|+|+|+||
T Consensus 466 ~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~ 545 (591)
T KOG0057|consen 466 LHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHR 545 (591)
T ss_pred cHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999999 9999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhh
Q 000553 1385 ISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1385 l~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
++++++||+|++||+|+|+|.|+|+||++ +++.|+++|..+
T Consensus 546 l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 546 LDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQ 586 (591)
T ss_pred chhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccc
Confidence 99999999999999999999999999999 778999988653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-69 Score=639.01 Aligned_cols=475 Identities=25% Similarity=0.365 Sum_probs=359.9
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCC----CeEEEEcC--------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT----HGSIHASG-------- 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~----~G~i~~~~-------- 672 (1428)
.++++|.+..+.... .+ ..+++||||++.+||.++|||.|||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~-~~-~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFATDG-GR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEecCC-cc-eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 678999998887652 22 45799999999999999999999999999999999999887 89998765
Q ss_pred ---------cEEEEcCCCC-CCcc--cHHHHHhc----CCCC-C---hHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 673 ---------SIAYVPQVPW-ILSG--TIRDNILF----GKNY-D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 673 ---------~i~y~~Q~p~-l~~~--ti~~nI~~----g~~~-~---~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
.|||++|+|+ .+|. ||.+-|.- .... . .++..+.++..+|.+.... +....
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPh 153 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPH 153 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCc
Confidence 4999999996 4554 77766642 2222 1 2233344455555433221 45677
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeE
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i 811 (1428)
.|||||||||.||+||..+|++||+||||+|||+.++..|++.+.......|.++|+|||++..+.+ ||+|+||.+|++
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999987332223457799999999999876 999999999999
Q ss_pred EEecChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHH
Q 000553 812 KWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKN 891 (1428)
Q Consensus 812 ~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 891 (1428)
+|.|+.+++.++...-+. . .+
T Consensus 234 VE~G~~~~i~~~p~hpYT------~-----------------------------------~L------------------ 254 (539)
T COG1123 234 VETGPTEEILSNPQHPYT------R-----------------------------------GL------------------ 254 (539)
T ss_pred EEecCHHHHHhccCCccc------H-----------------------------------HH------------------
Confidence 999999998653211000 0 00
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 892 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAA 971 (1428)
Q Consensus 892 y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 971 (1428)
|.. .+...
T Consensus 255 ---------------------------------l~a-----~p~~~---------------------------------- 262 (539)
T COG1123 255 ---------------------------------LAA-----VPRLG---------------------------------- 262 (539)
T ss_pred ---------------------------------Hhh-----CCCcc----------------------------------
Confidence 000 00000
Q ss_pred HHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000553 972 VKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1051 (1428)
Q Consensus 972 ~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~ 1051 (1428)
T Consensus 263 -------------------------------------------------------------------------------- 262 (539)
T COG1123 263 -------------------------------------------------------------------------------- 262 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQV 1131 (1428)
Q Consensus 1052 ~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~ 1131 (1428)
T Consensus 263 -------------------------------------------------------------------------------- 262 (539)
T COG1123 263 -------------------------------------------------------------------------------- 262 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCC-------
Q 000553 1132 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS------- 1204 (1428)
Q Consensus 1132 gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~------- 1204 (1428)
.+.... ......-+....++++|++++|...
T Consensus 263 -----------------------------------------~~~~~~-~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~ 300 (539)
T COG1123 263 -----------------------------------------DEKIIR-LPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRE 300 (539)
T ss_pred -----------------------------------------cccccc-cccccccccCceeEeeeeeeeecccccccccc
Confidence 000000 0000000023468999999999741
Q ss_pred --CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCee--CCCCChHhHhcceEEEeCCccc--
Q 000553 1205 --LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN--IINTPVRDLRGRFAVVPQSPFL-- 1278 (1428)
Q Consensus 1205 --~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~d--i~~i~~~~lR~~i~~VpQdp~l-- 1278 (1428)
...+++||||++++||.+||||.||||||||.++|+|+++|++|+|.++|.| .+.-....+|+++-+|.|||+-
T Consensus 301 ~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SL 380 (539)
T COG1123 301 RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380 (539)
T ss_pred ccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCccccc
Confidence 2468999999999999999999999999999999999999999999999977 3333456688899999999973
Q ss_pred c-CCcHHHhcC-cCCCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecccc
Q 000553 1279 F-EGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355 (1428)
Q Consensus 1279 f-~gTIR~NLd-p~~~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS 1355 (1428)
- ..||+++|. |...+.... .+-.+..+.+.++..||.. .++.....||||||||+||||||..+|++||+|||||
T Consensus 381 nPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~S 458 (539)
T COG1123 381 NPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVS 458 (539)
T ss_pred CccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCcc
Confidence 3 359999984 322111100 1111112333344446665 4667778899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000553 1356 NVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425 (1428)
Q Consensus 1356 ~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~ 1425 (1428)
+||+-+.+.|.+.|.+.-+ +.|.|+|+|++..++. ||||+||++|+|||.|+.+++.+++.-.|.+...+
T Consensus 459 aLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 459 ALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 9999999999999877543 7999999999999997 89999999999999999999999887777776544
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-67 Score=675.58 Aligned_cols=537 Identities=21% Similarity=0.262 Sum_probs=441.9
Q ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1428)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1428)
.+++..++.+++.++...+..++..++.++.|++++.++|.+-........+.++++++++.++..++.....+...+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455466778888888899999999999999999999998764333334445566666677777888888888899999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000553 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 425 (1428)
Q Consensus 348 ~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~ 425 (1428)
.++...+...+|+|.++++...+.+.+.|++++.++ |++.+.+.... +..+...++-+ +++++++..-++.+++.+
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFAL-LNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888889999999987 78888875432 23333444433 333333333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 426 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 505 (1428)
Q Consensus 426 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 505 (1428)
+++++.+.+..++.+.+.+..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+......+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677788888899999999999999999999999999999999999988888776666666555555554444
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhh
Q 000553 506 FFWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1428)
Q Consensus 506 ~~~~~~~~~--~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 583 (1428)
.+......+ +.++.+|+|.+.++.+|.+.++++.+++..+..|+..++..+..+.++.++++|+.++++.++..+...
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~ 442 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence 433333222 234566778888889999999999999999999999999999999999999999999997654221100
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC
Q 000553 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~ 663 (1428)
..+ ......|+++|++|+|++++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|
T Consensus 443 ---~~~----------~~~~~~I~~~nvsf~Y~~~~----~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 443 ---TDP----------GKLSGAIEVDRVTFRYRPDG----PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred ---CCC----------CCCCceEEEEEEEEEcCCCC----ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 000 11235799999999997432 2359999999999999999999999999999999999999
Q ss_pred CCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCC
Q 000553 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1428)
Q Consensus 664 ~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~ 730 (1428)
++|+|.++| +||||+|+|++|++||+|||.+|++.++++..++++.|+++++++.+|+|++|.+||+
T Consensus 506 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 999999987 5999999999999999999999988899999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCe
Q 000553 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1428)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 810 (1428)
|.+|||||||||+||||++++|+|++||||||+||+++++++.+. +.. . ++|+|+||||++.++.||+|++|++|+
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~-L~~-~--~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES-LER-L--KVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-h--CCeEEEEecChHHHHcCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999988 433 2 589999999999999999999999999
Q ss_pred EEEecChHHHHhccccC
Q 000553 811 VKWIGSSADLAVSLYSG 827 (1428)
Q Consensus 811 i~~~g~~~el~~~~~~~ 827 (1428)
|+++|+++|+.+..+.+
T Consensus 662 iv~~G~~~~Ll~~~~~y 678 (686)
T TIGR03797 662 VVQQGTYDELMAREGLF 678 (686)
T ss_pred EEEECCHHHHHhCCcHH
Confidence 99999999998765443
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=677.37 Aligned_cols=543 Identities=20% Similarity=0.206 Sum_probs=444.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 271 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 350 (1428)
Q Consensus 271 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 350 (1428)
+..++.+++.++..++..++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++.++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKL 225 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888888999999999999999999998764333333445556666667777888888888899999999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000553 351 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 429 (1428)
Q Consensus 351 r~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~ 429 (1428)
...+...+|+|.++++...+.+.++|+++|.++.| +.+.++.. .+..+....+.+++.+.+++..-++.+++.++.++
T Consensus 226 ~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 304 (710)
T TIGR03796 226 AVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAA 304 (710)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888999999999888 56776543 34444444455444444444444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 430 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509 (1428)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 509 (1428)
+.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++.+.++.+...+......+...+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (710)
T TIGR03796 305 INVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPT 384 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777888888888999999999999999999999999999999999999999888888877766665555444333
Q ss_pred HHHHH--HHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcC
Q 000553 510 TTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 587 (1428)
Q Consensus 510 ~~~~~--~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 587 (1428)
....+ +.++++|+|.+.++.+|.+.++++.++++.+..|+..++..+..+.++.++++|+.++++.++..+..... .
T Consensus 385 ~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~-~ 463 (710)
T TIGR03796 385 LLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEE-A 463 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc-c
Confidence 32222 34567788888889999999999999999999999999999999999999999999999765432211000 0
Q ss_pred CCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeE
Q 000553 588 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1428)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~ 667 (1428)
.... ..........|+++|++|+|+..+ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+
T Consensus 464 ~~~~----~~~~~~~~~~I~~~~vsf~y~~~~----~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 464 PAAG----SEPSPRLSGYVELRNITFGYSPLE----PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred cccc----cccCCCCCCeEEEEEEEEecCCCC----CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 0000 000011235799999999997532 23599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCcccHHHHHhcCC-CCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCc
Q 000553 668 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1428)
Q Consensus 668 i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~ 733 (1428)
|.++| .|+||||+|++|++||||||.++. +.+++++.++++.+++++++..+|+|++|.+||+|.+
T Consensus 536 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~ 615 (710)
T TIGR03796 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN 615 (710)
T ss_pred EEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCC
Confidence 99986 599999999999999999999875 5789999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEE
Q 000553 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 813 (1428)
Q Consensus 734 LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~ 813 (1428)
|||||||||+||||++++|+|+|||||||+||+++++++++.+. . .++|+|+||||++.+..||+|++|++|++++
T Consensus 616 LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~-~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR-R---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH-h---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999842 2 4799999999999999999999999999999
Q ss_pred ecChHHHHhccccC
Q 000553 814 IGSSADLAVSLYSG 827 (1428)
Q Consensus 814 ~g~~~el~~~~~~~ 827 (1428)
+|+++|+++..+.+
T Consensus 692 ~G~~~~Ll~~~~~y 705 (710)
T TIGR03796 692 RGTHEELWAVGGAY 705 (710)
T ss_pred ecCHHHHHHcCCcH
Confidence 99999998765443
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=666.53 Aligned_cols=481 Identities=22% Similarity=0.302 Sum_probs=387.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHH
Q 000553 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNIL 1020 (1428)
Q Consensus 941 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~ 1020 (1428)
|+++++++.++..++.++..++....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+.......+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44455555555666667767777778899999999999999999999999999999999999999999987666666666
Q ss_pred HHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHH
Q 000553 1021 LANFVGLLGIAVVL-SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDY 1099 (1428)
Q Consensus 1021 ~~~~~~~l~~~~~~-~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~ 1099 (1428)
+..++..++.++++ .+.+|.++++++..+.++..+.+.+.+..++..+......+.+.+.+.|+++|+++||+|++|+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 66555444444443 34556554443333333333333333333333333444567788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH------HHHH---HHHHHHHHHHHHHHHHHHH
Q 000553 1100 FMAKFKEHVVLYQRTSYSELTASL------------------WLSLRL------QVGL---ALSYAAPIVSLLGNFLSSF 1152 (1428)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~------------------wl~~~l------~~gl---~l~~~~~~~~~l~~~i~~~ 1152 (1428)
+.+++.+..++..+..+....... |++..+ .+|. ++.|...+...+..+...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~ 277 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMF 277 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877765555443221111 111111 0221 2233444556666777788
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcH
Q 000553 1153 TETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1232 (1428)
Q Consensus 1153 ~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGK 1232 (1428)
.++.....+.+|+.++.+.++|........+ +.+|.|+|+||+|+|+++.+++|+|+||+|+|||++||+|+|||||
T Consensus 278 ~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGK 354 (569)
T PRK10789 278 NIVERGSAAYSRIRAMLAEAPVVKDGSEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGK 354 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCH
Confidence 8999999999999999987654322111111 2356899999999998655679999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHH
Q 000553 1233 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEV 1311 (1428)
Q Consensus 1233 STL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i 1311 (1428)
|||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||+|++|+||+||||.++. ..+|++++++++.+++++++
T Consensus 355 STLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i 434 (569)
T PRK10789 355 STLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDI 434 (569)
T ss_pred HHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999998774 57899999999999999999
Q ss_pred HhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhh
Q 000553 1312 EAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1389 (1428)
Q Consensus 1312 ~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~ 1389 (1428)
.++ |+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++.
T Consensus 435 ~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~ 514 (569)
T PRK10789 435 LRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT 514 (569)
T ss_pred HhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH
Confidence 988 999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred hcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000553 1390 NMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425 (1428)
Q Consensus 1390 ~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~ 1425 (1428)
.||+|++|++|+++|.|+|++|++++ +.|++|++.
T Consensus 515 ~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 549 (569)
T PRK10789 515 EASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRY 549 (569)
T ss_pred cCCEEEEEeCCEEEEecCHHHHHHcC-ChHHHHHHH
Confidence 99999999999999999999999865 699999874
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=671.08 Aligned_cols=535 Identities=21% Similarity=0.289 Sum_probs=443.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1428)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1428)
.++..++.+++.+....+..++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888888888899999999999999999999987543333334445555666667777887788888899999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000553 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGLA 426 (1428)
Q Consensus 349 ~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~ 426 (1428)
++...+...+|+|.++++... .+.++|++++.+ .|++.+.+.... +..+...++-++..++ ++..-++.+++.++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~li~l~ 293 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLV-IAIIGGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 999999999999999999876 567899999998 799999986542 3334444444433333 33333444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 427 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506 (1428)
Q Consensus 427 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 506 (1428)
++++.+.+..++.+++.+..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..++..+...+..........
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667778888899999999999999999999999999999999999999999999888777777776666655444
Q ss_pred HHHHHHHH--HHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhh
Q 000553 507 FWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 584 (1428)
Q Consensus 507 ~~~~~~~~--~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 584 (1428)
+......+ +.++++|+|.+.++.+|++.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..+....
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 453 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR 453 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 43333222 3356678888888899999999999999999999999999999999999999999999987643221000
Q ss_pred hcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCC
Q 000553 585 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664 (1428)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~ 664 (1428)
..+ .......|+++|++|+|+... +++|+|+||+|++||.++|+|+||||||||+++|+|+++|+
T Consensus 454 --~~~---------~~~~~~~I~~~~vsf~Y~~~~----~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~ 518 (694)
T TIGR03375 454 --FLH---------RPRLQGEIEFRNVSFAYPGQE----TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred --CCC---------CCCccceEEEEEEEEEeCCCC----ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 000 012235799999999997431 23599999999999999999999999999999999999999
Q ss_pred CeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCC
Q 000553 665 HGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1428)
Q Consensus 665 ~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~ 730 (1428)
+|+|.++| .|+||+|+|++|++||+|||.++++ .+++++.++++.|+++++++.+|+|++|.+||+
T Consensus 519 ~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 519 EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred CceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 99999987 6999999999999999999999986 789999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCe
Q 000553 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1428)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 810 (1428)
|.+||||||||++||||++++|+|+|||||||+||+++++.+.+. +.. ..+++|+|+||||++.+..||+|++|++|+
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~-~~~~~T~iiItHrl~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKR-WLAGKTLVLVTHRTSLLDLVDRIIVMDNGR 676 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHH-HhCCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999887 443 456899999999999999999999999999
Q ss_pred EEEecChHHHHhc
Q 000553 811 VKWIGSSADLAVS 823 (1428)
Q Consensus 811 i~~~g~~~el~~~ 823 (1428)
++++|+++|+++.
T Consensus 677 i~e~G~~~eLl~~ 689 (694)
T TIGR03375 677 IVADGPKDQVLEA 689 (694)
T ss_pred EEeeCCHHHHHHH
Confidence 9999999999764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=658.70 Aligned_cols=516 Identities=23% Similarity=0.320 Sum_probs=404.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000553 905 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1428)
Q Consensus 905 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 984 (1428)
+++.++..++....++.+++.++..... .....++.+++++.++..+..++..........+....+++++++++++
T Consensus 25 ~~~~~~~~~~~~~~p~~~~~iid~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~ 101 (585)
T TIGR01192 25 VIANITLAAITIAEPILFGRIIDAISSK---SDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIIS 101 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555566666666666655532111 1111222222223333333333334444455555666677799999999
Q ss_pred CCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1428)
Q Consensus 985 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr 1064 (1428)
.|++||+++++|++++|+++|++.+.......+...+..++.+++.+++++..+|.++++++.+.+++..+.+.+.+..+
T Consensus 102 l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~ 181 (585)
T TIGR01192 102 MPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTK 181 (585)
T ss_pred CCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777777777777666666777777777766655555555555566666666
Q ss_pred HHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH
Q 000553 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS------------------LWLS 1126 (1428)
Q Consensus 1065 ~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~------------------~wl~ 1126 (1428)
+..+......+.+.+++.|+++|++|||+|+.++.+.+++.+..++..+..+...... .|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 261 (585)
T TIGR01192 182 NGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIG 261 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677788999999999999999999999998888887776555433321111 1111
Q ss_pred HHHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCC-CCCccEEEEE
Q 000553 1127 LRLQ------VG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW-PFQGLIEFQN 1196 (1428)
Q Consensus 1127 ~~l~------~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~w-p~~g~I~f~n 1196 (1428)
..+- +| ..+.++..+...+..+...+.++.....+.+|+.++.+.+++...... + ..+ +..+.|+|+|
T Consensus 262 ~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~ 339 (585)
T TIGR01192 262 TVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-A-PELPNVKGAVEFRH 339 (585)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc-C-CCCCCCCCeEEEEE
Confidence 1110 22 123344455666777788888888899999999999876654321111 1 112 2356899999
Q ss_pred EEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCc
Q 000553 1197 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSP 1276 (1428)
Q Consensus 1197 vs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp 1276 (1428)
|+|+|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|+++++|||||
T Consensus 340 v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 418 (585)
T TIGR01192 340 ITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDA 418 (585)
T ss_pred EEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCC
Confidence 99999754 46899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000553 1277 FLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353 (1428)
Q Consensus 1277 ~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEa 1353 (1428)
.+|++|+||||.++. ..+|++++++++.+++++++.++ |+||.++++|.+||||||||++|||||+++|+|||||||
T Consensus 419 ~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEp 498 (585)
T TIGR01192 419 GLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEA 498 (585)
T ss_pred ccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999998764 46889999999999999999887 999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000553 1354 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1354 TS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~~ 1427 (1428)
||+||.+|++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ +|.|+++++...
T Consensus 499 ts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 499 TSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLRRSG 571 (585)
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHHHHhCc
Confidence 9999999999999999988889999999999999999999999999999999999999986 469999997653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-66 Score=665.89 Aligned_cols=535 Identities=19% Similarity=0.191 Sum_probs=421.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 274 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSS 353 (1428)
Q Consensus 274 ~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 353 (1428)
++.+++.++...++.++..++..+.|++++.++|.+....+...-...+..++++.++..++.....+...+.+.++...
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888999999999999999999998864322222222223333444455555555555566677777788
Q ss_pred HHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000553 354 IMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLI 432 (1428)
Q Consensus 354 L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~~~~ 432 (1428)
+...+|+|.++.+...+++.++|++.|.++.|++.+.+... .+..++...+.+++++++++..-...+++.++.+++..
T Consensus 236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~ 315 (711)
T TIGR00958 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315 (711)
T ss_pred HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88899999999999888888999999999999999987543 45555555555555444443322222333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 512 (1428)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 512 (1428)
.+..++.++.++..++..+..++..+...|.++|+++||.+++|+.+.+++.+..++-.+...+.....+..........
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (711)
T TIGR00958 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG 395 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888999999999999999999999999999988777776654444433333332222222221111
Q ss_pred --HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCC
Q 000553 513 --TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 590 (1428)
Q Consensus 513 --~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 590 (1428)
..+.++.++.|.+.++.+|++.+++++.+...+..|+..++..+..+.++.++.+||.+|++.++..+.... ..|
T Consensus 396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~- 472 (711)
T TIGR00958 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--LAP- 472 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCC-
Confidence 223345677788888899999999999999999999999999999999999999999999976543221100 001
Q ss_pred cccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEE
Q 000553 591 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 670 (1428)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~ 670 (1428)
......|+++|++|+|+++++ +++|+|+||+|++||.++||||||||||||+++|+|+++|++|+|.+
T Consensus 473 ---------~~~~~~I~~~nVsf~Y~~~~~---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 473 ---------LNLEGLIEFQDVSFSYPNRPD---VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred ---------CCCCCeEEEEEEEEECCCCCC---CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 122356999999999985432 34599999999999999999999999999999999999999999999
Q ss_pred cC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 671 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 671 ~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
+| +|+||+|+|++|++||||||.+|.+ .++++..++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 87 5999999999999999999999964 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecC
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 816 (1428)
|||||++||||++++|+|+|||||||+||+++++.+.+. . ..+++|+|+||||++.+..||+|++|++|+|+++|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~-~---~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES-R---SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHh-h---ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 999999999999999999999999999999999988872 2 346899999999999999999999999999999999
Q ss_pred hHHHHhccccC
Q 000553 817 SADLAVSLYSG 827 (1428)
Q Consensus 817 ~~el~~~~~~~ 827 (1428)
|+|++++.+.+
T Consensus 697 ~~eL~~~~~~y 707 (711)
T TIGR00958 697 HKQLMEDQGCY 707 (711)
T ss_pred HHHHHhCCCch
Confidence 99998765443
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=654.20 Aligned_cols=489 Identities=22% Similarity=0.312 Sum_probs=382.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccC-CCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000553 906 LSAILMQASRNGNDLWLSYWVDTTG-SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1428)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 984 (1428)
++.++..++....++.+++..+... ..........+++.++++.++..++.+++.+.....+.+...+++.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 89 (529)
T TIGR02857 10 LLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAA 89 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555666665555321 111111123345556666677778888888888999999999999999999999
Q ss_pred CCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1428)
Q Consensus 985 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr 1064 (1428)
.|..+|++.++|++++|+++|++.+++.+...+..++..++.+++.++++.+.+|+++++++...++...+...+.+..+
T Consensus 90 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 169 (529)
T TIGR02857 90 LGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQ 169 (529)
T ss_pred CCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888777777777777766666666666766544333222222122222222222
Q ss_pred HHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HH
Q 000553 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL-------------------WL 1125 (1428)
Q Consensus 1065 ~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------wl 1125 (1428)
...+......+.+.+++.|+++|+++||+|+.|+++.+++.+..++..+.......... |.
T Consensus 170 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (529)
T TIGR02857 170 AAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYI 249 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334445677899999999999999999999999998877666554433221111 11
Q ss_pred HHHHH-----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEE
Q 000553 1126 SLRLQ-----VG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1197 (1428)
Q Consensus 1126 ~~~l~-----~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nv 1197 (1428)
+..+. +| .++.++..+...+..+...+.++.....+.+|+.++++.++++.... +...+..+.|+|+||
T Consensus 250 ~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~~~~~~~i~~~~v 326 (529)
T TIGR02857 250 GFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVTAAPAPSLEFSGL 326 (529)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCCCCCCCeEEEEEE
Confidence 11110 22 12233444556667777888999999999999999998654322111 111223468999999
Q ss_pred EEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCcc
Q 000553 1198 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF 1277 (1428)
Q Consensus 1198 s~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~ 1277 (1428)
+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|+++++|||||+
T Consensus 327 ~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~ 406 (529)
T TIGR02857 327 SVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF 406 (529)
T ss_pred EEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCc
Confidence 99998655679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccc
Q 000553 1278 LFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354 (1428)
Q Consensus 1278 lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaT 1354 (1428)
+|+|||||||.++. ..+|++++++++.++++++++++ ||||.++|+|.+||||||||++||||++++|+|+||||||
T Consensus 407 lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~t 486 (529)
T TIGR02857 407 LFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT 486 (529)
T ss_pred ccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 99999999998764 46889999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEE
Q 000553 1355 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILIL 1397 (1428)
Q Consensus 1355 S~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl 1397 (1428)
|+||++|++.|++.|++..+++|+|+||||++++..||+|+||
T Consensus 487 s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 487 AHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999888899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-65 Score=661.71 Aligned_cols=535 Identities=21% Similarity=0.244 Sum_probs=431.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1428)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 351 (1428)
..++.+++.++...+..++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788889999999999999999999987543333333444555566667777777777888889999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000553 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-F-HDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 429 (1428)
Q Consensus 352 ~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~-~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~ 429 (1428)
..+...+|+|.++++...+++.+.|++++.++ |++.+.+.... + ..+...++.++..+++++.. ++.+++.+++++
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQN-MLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Confidence 99999999999999999888899999999998 99998875432 2 22333343333333333322 223333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 430 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509 (1428)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 509 (1428)
+.+.+..++.+++++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..++..+...+..........+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888899999999999999999999999999999999999888877765555554444444333333222
Q ss_pred HHH--HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcC
Q 000553 510 TTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 587 (1428)
Q Consensus 510 ~~~--~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 587 (1428)
... ..+.++++|+|.+.++.+|+|.++++.++...+..|+..+...+..+.++.++++|+.++++.++..+.....
T Consensus 387 ~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~-- 464 (708)
T TIGR01193 387 VTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKR-- 464 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc--
Confidence 222 2234567788888899999999999999999999999999999999999999999999999765432211000
Q ss_pred CCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeE
Q 000553 588 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1428)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~ 667 (1428)
.+ .....+.|+++|++|+|+.+ + ++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++|+
T Consensus 465 ~~---------~~~~~~~I~~~~vsf~y~~~--~---~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 465 TE---------LNNLNGDIVINDVSYSYGYG--S---NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred cC---------CCCCCCcEEEEEEEEEcCCC--C---cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 00 01233579999999999632 2 3599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCcccHHHHHhcCC--CCChHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 668 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 668 i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~--~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
|.++| .|+||||+|++|++||||||.+|. +.++++..++++.++++++++.+|+|++|.+||+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99987 599999999999999999999983 478889999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEE
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 812 (1428)
+|||||||||+||||++++|+|+|||||||+||+++++++.+.+ .. . +++|+|+||||++.+..||+|++|++|+++
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L-~~-~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL-LN-L-QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HH-h-cCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998884 33 3 679999999999999999999999999999
Q ss_pred EecChHHHHhccccC
Q 000553 813 WIGSSADLAVSLYSG 827 (1428)
Q Consensus 813 ~~g~~~el~~~~~~~ 827 (1428)
+.|+++|+++..+.+
T Consensus 688 ~~G~~~~L~~~~~~y 702 (708)
T TIGR01193 688 EQGSHDELLDRNGFY 702 (708)
T ss_pred EECCHHHHHhcCCcH
Confidence 999999998765443
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-67 Score=665.73 Aligned_cols=492 Identities=22% Similarity=0.304 Sum_probs=355.7
Q ss_pred CceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----------
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---------- 672 (1428)
+..++++|+++.|..... ..++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 10 ~~~l~v~~l~~~y~~~~~--~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQ--KIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCCC--ceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 346899999999964211 12469999999999999999999999999999999999999999987643
Q ss_pred -----------------cEEEEcCCC--CCCc-ccHHHHHhcCC----CCCh----HHHHHHHHHhcchHHHhcccCCCc
Q 000553 673 -----------------SIAYVPQVP--WILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDM 724 (1428)
Q Consensus 673 -----------------~i~y~~Q~p--~l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~c~l~~di~~l~~gd~ 724 (1428)
.||||+|+| .++. .||+|||.++. ..+. ++..++++..+|.. . .
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-------~-~ 159 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE-------A-Q 159 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC-------h-h
Confidence 489999998 4554 59999998752 1222 23444555555521 0 1
Q ss_pred ccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-cCCE
Q 000553 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADM 802 (1428)
Q Consensus 725 t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~ 802 (1428)
........+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+. +.... ..|+|+|+|||+++.+. .||+
T Consensus 160 ~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l-l~~l~~~~g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 160 TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL-IKVLQKEMSMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 123456679999999999999999999999999999999999999888875 33311 23789999999999876 4999
Q ss_pred EEEEeCCeEEEecChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcC
Q 000553 803 VVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEG 882 (1428)
Q Consensus 803 i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 882 (1428)
|++|++|++++.|+++++...... ... ..
T Consensus 239 i~vl~~G~i~~~g~~~~~~~~~~~------~~~-----------------------------------~~---------- 267 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQIFHAPQH------PYT-----------------------------------RA---------- 267 (623)
T ss_pred EEEeeCCeecccCCHHHhhcCCCC------hhh-----------------------------------hh----------
Confidence 999999999999988776321000 000 00
Q ss_pred cchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000553 883 RVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFS 962 (1428)
Q Consensus 883 ~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 962 (1428)
++. ..+. +..+.. ..
T Consensus 268 ---------l~~---------------------~~~~--~~~~~~---~~------------------------------ 282 (623)
T PRK10261 268 ---------LLA---------------------AVPQ--LGAMKG---LD------------------------------ 282 (623)
T ss_pred ---------hhh---------------------ccCc--cccccc---cc------------------------------
Confidence 000 0000 000000 00
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000553 963 FAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL 1042 (1428)
Q Consensus 963 ~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 1042 (1428)
.| +. .
T Consensus 283 ----------------------~~---------~~---------------~----------------------------- 287 (623)
T PRK10261 283 ----------------------YP---------RR---------------F----------------------------- 287 (623)
T ss_pred ----------------------CC---------cc---------------c-----------------------------
Confidence 00 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1043 LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122 (1428)
Q Consensus 1043 ~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1122 (1428)
|.
T Consensus 288 ---------------------------------~~--------------------------------------------- 289 (623)
T PRK10261 288 ---------------------------------PL--------------------------------------------- 289 (623)
T ss_pred ---------------------------------cc---------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEEC
Q 000553 1123 LWLSLRLQVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYK 1202 (1428)
Q Consensus 1123 ~wl~~~l~~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~ 1202 (1428)
.+ + ++-. . ..+.+.. ...+ +....++++|++++|+
T Consensus 290 --------------------------------~~----~-~~~~-~-~~~~~~~---~~~~---~~~~~L~~~~l~~~y~ 324 (623)
T PRK10261 290 --------------------------------IS----L-EHPA-K-QEPPIEQ---DTVV---DGEPILQVRNLVTRFP 324 (623)
T ss_pred --------------------------------cc----c-cccc-c-cCccccc---cccc---CCCceEEEeeeEEEEc
Confidence 00 0 0000 0 0000000 0000 1123599999999996
Q ss_pred CC---------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH---hHhcceE
Q 000553 1203 PS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGRFA 1270 (1428)
Q Consensus 1203 ~~---------~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~i~ 1270 (1428)
.. ...+|+||||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+.. .+|++|+
T Consensus 325 ~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~ 404 (623)
T PRK10261 325 LRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQ 404 (623)
T ss_pred CCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeE
Confidence 21 13699999999999999999999999999999999999999999999999999877643 4578899
Q ss_pred EEeCCcc--ccCC-cHHHhcCcC----CCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1271 VVPQSPF--LFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1271 ~VpQdp~--lf~g-TIR~NLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
||||+|. +++. ||++|+... +....++.. ....+.++.+||+ .........||||||||++|||||+
T Consensus 405 ~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~ 479 (623)
T PRK10261 405 FIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----ARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA 479 (623)
T ss_pred EEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 9999983 6654 999998531 111111111 1123444455775 3456666789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f 1419 (1428)
.+|+||||||||++||..+.+.|.+.|++.. .+.|||+|||+++.+.. ||||++|++|+|+|.|+++++..++...|
T Consensus 480 ~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~ 559 (623)
T PRK10261 480 LNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPY 559 (623)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHH
Confidence 9999999999999999999999999998764 37899999999999986 89999999999999999999987665445
Q ss_pred H-HHHH
Q 000553 1420 S-SFVR 1424 (1428)
Q Consensus 1420 ~-~l~~ 1424 (1428)
. .++.
T Consensus 560 ~~~l~~ 565 (623)
T PRK10261 560 TRKLMA 565 (623)
T ss_pred HHHHHh
Confidence 3 3443
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=640.89 Aligned_cols=539 Identities=18% Similarity=0.201 Sum_probs=428.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 271 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 350 (1428)
Q Consensus 271 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 350 (1428)
..+++.+++.++..++..++..++..+.|++++.+++.+..+........++.+++++.++..++.....+...+++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777888899999999987654322212222333344455566666666667778888999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000553 351 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 429 (1428)
Q Consensus 351 r~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~ 429 (1428)
...+...+|+|.++++.....+.+.|++++.++.|++.+.+.. ..+..++..++.+++.+.+++..-++.+++.+++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888899999999999999998754 345555666666555554444433333343444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 430 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509 (1428)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 509 (1428)
+.+.+..+..+++++..++.++..++..+...|.++|+++||.+|+|+.+.++.++.-++-.+...+..........+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667778888888899999999999999999999999999999988888877654444444444443333323222
Q ss_pred HHH--HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcC
Q 000553 510 TTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 587 (1428)
Q Consensus 510 ~~~--~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 587 (1428)
... ..+.++.++.|.+..+.++++.+.+.++++..+..|+..+...+..+.++..+++|+.++++.++..+....
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~--- 333 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR--- 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc---
Confidence 222 223345666777777889999999999999999999999999999999999999999999976543221000
Q ss_pred CCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeE
Q 000553 588 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1428)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~ 667 (1428)
. .+.....|+++|++|+|++.+ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+
T Consensus 334 -~---------~~~~~~~i~~~~vsf~y~~~~----~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 334 -V---------IERAKGDIEFRNVTFTYPGKE----VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred -C---------CCCCCCeEEEEEEEEecCCCC----CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 0 011234699999999997531 23599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCcccHHHHHhcCC--CCChHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 668 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 668 i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~--~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
|.++| .|+||||+|.+|++||+|||.+|. ++++++++++++.++++++++.+|+|++|.+|++|.
T Consensus 400 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~ 479 (582)
T PRK11176 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV 479 (582)
T ss_pred EEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC
Confidence 99976 589999999999999999999985 378999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEE
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 812 (1428)
+||||||||++||||+|++|+|++|||||||||+++++.+++. +.. +.+++|+|+||||++.++.||+|++|++|+++
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA-LDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIV 557 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999887 433 44679999999999999999999999999999
Q ss_pred EecChHHHHhccccCc
Q 000553 813 WIGSSADLAVSLYSGF 828 (1428)
Q Consensus 813 ~~g~~~el~~~~~~~~ 828 (1428)
++|+++++++..+.+.
T Consensus 558 e~g~~~~l~~~~~~y~ 573 (582)
T PRK11176 558 ERGTHAELLAQNGVYA 573 (582)
T ss_pred EeCCHHHHHhCCChHH
Confidence 9999999987655443
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-64 Score=639.13 Aligned_cols=535 Identities=20% Similarity=0.229 Sum_probs=437.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 271 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 350 (1428)
Q Consensus 271 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 350 (1428)
..+++.+++.++..++..++..++...+|++++.+++...........+.++++++++.++..++.....+...+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888889999999999999999999986544322222333344455566666777777777888899999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000553 351 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 429 (1428)
Q Consensus 351 r~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~ 429 (1428)
...+...+|+|.++.+.....+.+.|++.|.++.|++++..... .+..++...+.+++++.+++..-.+.+++.+++++
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999888888999999999999999987553 45555555555555544444433333444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 430 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509 (1428)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 509 (1428)
+.+.+..++.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..++..+...+..........+..
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677888888999999999999999999999999999999999998888888776666655555444444333332
Q ss_pred HHHH--HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcC
Q 000553 510 TTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 587 (1428)
Q Consensus 510 ~~~~--~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 587 (1428)
.... .+.++.+|.|.+..+.+|++.+++++.+++.+..|+..+...+..+.+++++++|+.++++.++..+...
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~---- 321 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT---- 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----
Confidence 2222 2334566777788889999999999999999999999999999999999999999999997654322100
Q ss_pred CCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeE
Q 000553 588 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1428)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~ 667 (1428)
.+. ......++++|++|+|++++ +++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+
T Consensus 322 ~~~---------~~~~~~i~~~~v~f~y~~~~----~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~ 388 (571)
T TIGR02203 322 RAI---------ERARGDVEFRNVTFRYPGRD----RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388 (571)
T ss_pred CCC---------CCCCCeEEEEEEEEEcCCCC----CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 000 11234699999999997532 24599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCcccHHHHHhcCC--CCChHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 668 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 668 i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~--~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
|.++| .|+||||+|++|++|+||||.++. +.++++..++++.|++++++..+|+|.+|.+|++|.
T Consensus 389 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~ 468 (571)
T TIGR02203 389 ILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGV 468 (571)
T ss_pred EEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCC
Confidence 99987 499999999999999999999985 589999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEE
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 812 (1428)
+||||||||++||||++++|+|++||||||+||+++++++.+. +.. ..+++|+|+|||+.+.+..||+|++|++|+++
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~-L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA-LER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999887 443 45679999999999999999999999999999
Q ss_pred EecChHHHHhcc
Q 000553 813 WIGSSADLAVSL 824 (1428)
Q Consensus 813 ~~g~~~el~~~~ 824 (1428)
+.|+++++.+..
T Consensus 547 ~~g~~~~l~~~~ 558 (571)
T TIGR02203 547 ERGTHNELLARN 558 (571)
T ss_pred eeCCHHHHHHcC
Confidence 999999997653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-67 Score=586.87 Aligned_cols=461 Identities=26% Similarity=0.400 Sum_probs=379.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHH-HHH
Q 000553 961 FSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSY-VQV 1039 (1428)
Q Consensus 961 ~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~-~~~ 1039 (1428)
.++...+..+-+.+--+.|.++.+..+.|.-+..+|-+..-......-|+..+-..+.+.+..++-+...++++.+ ..|
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 3455666677777888888999999999988877776655444444445554555555555444444333333332 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1040 FFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEL 1119 (1428)
Q Consensus 1040 ~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 1119 (1428)
|++++.+..+++|.++...-..-.-..||.-..+.+...+.-.+++-+-+|++.||.|+++..+|.+.++.++++.....
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 66666555555544432222222223344444555566677889999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000553 1120 TASLWLSLRLQ---------------------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVP 1172 (1428)
Q Consensus 1120 ~~~~wl~~~l~---------------------------~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~ 1172 (1428)
..-.|+++... ....-.+..++..+++.+-..+.++.++....|+..+..+.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 77777765433 112334566777778888888999999999999999999887
Q ss_pred ccccccCCCCCCCCC-CCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEE
Q 000553 1173 QEELCGYQSLSPDWP-FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251 (1428)
Q Consensus 1173 ~e~~~~~~~~~~~wp-~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~ 1251 (1428)
.|....+ ..++-|| ..|.|.|+||+|.|.+. .++|+|+||++++|+++||||++|+||||+..+|+|+|++++|.|.
T Consensus 244 ~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~ 321 (497)
T COG5265 244 AEVSDAP-DAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321 (497)
T ss_pred hhhccCC-CCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE
Confidence 7653322 2344564 46889999999999876 4799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCC
Q 000553 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFS 1328 (1428)
Q Consensus 1252 IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS 1328 (1428)
|||+||..+..+.+|+.||+||||.+||++|+..|+.++++ .+++|++.|++.++++++++.+ |+||.|||+|-.||
T Consensus 322 id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklS 401 (497)
T COG5265 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401 (497)
T ss_pred EcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeecc
Confidence 99999999999999999999999999999999999998764 6899999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecCh
Q 000553 1329 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1329 gGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p 1408 (1428)
||||||+++||++|++|+||+||||||+||..||+.||.+|++..+++|.++|||||+||.++|.|+||++|+|+|.|+|
T Consensus 402 ggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred CchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhccCCcHHHHHHH
Q 000553 1409 QTLLQDECSVFSSFVR 1424 (1428)
Q Consensus 1409 ~eLl~~~~s~f~~l~~ 1424 (1428)
+||+++ +|.|++||.
T Consensus 482 ~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 482 EELLAA-GGLYAEMWR 496 (497)
T ss_pred HHHHHc-CChHHHHhc
Confidence 999997 789999986
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=691.80 Aligned_cols=531 Identities=20% Similarity=0.289 Sum_probs=418.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 891 NYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRA 970 (1428)
Q Consensus 891 ~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 970 (1428)
.|.....+..+++.+++.++..++....++.+...++... .......+...+++++++..++.+++.+++.+.+.+.
T Consensus 52 ~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 128 (1466)
T PTZ00265 52 KCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMN---LGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKI 128 (1466)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444445555555555555555555321 1112334455666777778888899999999999999
Q ss_pred HHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000553 971 AVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWF 1050 (1428)
Q Consensus 971 ~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~ 1050 (1428)
..+++.+++++++++|++|||..+.|++.+|++.|++.+...+...+..++..++.+++.++++++.+|.++++++.++.
T Consensus 129 ~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~p 208 (1466)
T PTZ00265 129 LKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFP 208 (1466)
T ss_pred HHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998889999988888888888888888876665444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 000553 1051 IYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEL----------- 1119 (1428)
Q Consensus 1051 ~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~----------- 1119 (1428)
+++.+...+.+..+...+......+...+.+.|+++|++|||+|+.|+.+.++|.+..+...+..+...
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~ 288 (1466)
T PTZ00265 209 LIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMIN 288 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344443344444444455667889999999999999999999999999887777665543321
Q ss_pred -------HHHHHHHHHHHH--------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 000553 1120 -------TASLWLSLRLQV--------------GL---ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1175 (1428)
Q Consensus 1120 -------~~~~wl~~~l~~--------------gl---~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~ 1175 (1428)
....|++.++-. |- .+.+.+.....+..+...+..+..+..|.+|+.+.++.+++.
T Consensus 289 ~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~ 368 (1466)
T PTZ00265 289 GFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLV 368 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 122344433211 11 111111112233455667788899999999999999877653
Q ss_pred cccCCCCCCCCCCCccEEEEEEEEEECCCC-CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE-C
Q 000553 1176 LCGYQSLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-D 1253 (1428)
Q Consensus 1176 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~I-D 1253 (1428)
.... .....|..+.|+|+||+|+|+... .++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++ |
T Consensus 369 ~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~ 446 (1466)
T PTZ00265 369 ENND--DGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIND 446 (1466)
T ss_pred CCCC--CCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeC
Confidence 2111 111223345899999999997532 46999999999999999999999999999999999999999999999 6
Q ss_pred CeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCC------------------------------------------
Q 000553 1254 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH------------------------------------------ 1291 (1428)
Q Consensus 1254 G~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~------------------------------------------ 1291 (1428)
|.|+++++.+++|++|++|||+|.+|++||+|||.++.
T Consensus 447 g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (1466)
T PTZ00265 447 SHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMS 526 (1466)
T ss_pred CcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcc
Confidence 79999999999999999999999999999999997631
Q ss_pred ----------------CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000553 1292 ----------------MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353 (1428)
Q Consensus 1292 ----------------~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEa 1353 (1428)
..+|++++++++.+++++++..+ |+||.++++|.+||||||||++|||||+++|+|||||||
T Consensus 527 ~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEp 606 (1466)
T PTZ00265 527 NTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEA 606 (1466)
T ss_pred cccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 24678999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeCC-------------------------------
Q 000553 1354 TANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHG------------------------------- 1400 (1428)
Q Consensus 1354 TS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G------------------------------- 1400 (1428)
||+||+++++.|++.|++.. +++|+|+||||++++..||+|+||++|
T Consensus 607 TSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1466)
T PTZ00265 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDN 686 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccc
Confidence 99999999999999999875 489999999999999999999999986
Q ss_pred ----------------eEEEecChhHHhccCCcHHHHHHHhh
Q 000553 1401 ----------------HLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1401 ----------------~ive~g~p~eLl~~~~s~f~~l~~~~ 1426 (1428)
+|+|+|+|+||+++++|.|+.|++.+
T Consensus 687 ~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 687 NNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred cccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 59999999999987789999999764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=651.07 Aligned_cols=455 Identities=25% Similarity=0.344 Sum_probs=345.8
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC-----CCeEEEEcC-------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~-----~~G~i~~~~------- 672 (1428)
.++++|+++.|+... ....+|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 488999999996321 112469999999999999999999999999999999999986 799997753
Q ss_pred ----------cEEEEcCCCC--CCc-ccHHHHHhcCC----CCC----hHHHHHHHHHhcchHHHhcccCCCcccccCCC
Q 000553 673 ----------SIAYVPQVPW--ILS-GTIRDNILFGK----NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731 (1428)
Q Consensus 673 ----------~i~y~~Q~p~--l~~-~ti~~nI~~g~----~~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g 731 (1428)
.++|++|+|. ++. .|+++|+.++. ..+ .++..++++.+++.... .......
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~ 154 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYP 154 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCC
Confidence 4899999985 443 59999986421 122 23445566666664210 0123455
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCC
Q 000553 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKG 809 (1428)
Q Consensus 732 ~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G 809 (1428)
.+|||||||||+||||++.+|+++||||||++||+...+++.+. +..... .++|+|+|||+++.+. .||+|++|++|
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL-LRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-HHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 68999999999999999999999999999999999999988875 322112 3789999999999876 49999999999
Q ss_pred eEEEecChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHH
Q 000553 810 QVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVY 889 (1428)
Q Consensus 810 ~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 889 (1428)
++++.|+++++..... . .. .
T Consensus 234 ~i~~~g~~~~~~~~~~-------------------------------------------~---------------~~-~- 253 (529)
T PRK15134 234 RCVEQNRAATLFSAPT-------------------------------------------H---------------PY-T- 253 (529)
T ss_pred EEEEeCCHHHHhhCCC-------------------------------------------C---------------HH-H-
Confidence 9998887665431000 0 00 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 890 KNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 969 (1428)
Q Consensus 890 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 969 (1428)
..+.
T Consensus 254 ~~~~---------------------------------------------------------------------------- 257 (529)
T PRK15134 254 QKLL---------------------------------------------------------------------------- 257 (529)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000553 970 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1049 (1428)
Q Consensus 970 ~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~ 1049 (1428)
T Consensus 258 -------------------------------------------------------------------------------- 257 (529)
T PRK15134 258 -------------------------------------------------------------------------------- 257 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1050 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRL 1129 (1428)
Q Consensus 1050 ~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l 1129 (1428)
. . .+
T Consensus 258 -----------~---------~---~~----------------------------------------------------- 261 (529)
T PRK15134 258 -----------N---------S---EP----------------------------------------------------- 261 (529)
T ss_pred -----------H---------h---Cc-----------------------------------------------------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECC------
Q 000553 1130 QVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKP------ 1203 (1428)
Q Consensus 1130 ~~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~------ 1203 (1428)
+ .++.. . ++ +....|+++|++++|+.
T Consensus 262 ----------------------------------~------~~~~~----~-~~---~~~~~l~~~~l~~~~~~~~~~~~ 293 (529)
T PRK15134 262 ----------------------------------S------GDPVP----L-PE---PASPLLDVEQLQVAFPIRKGILK 293 (529)
T ss_pred ----------------------------------c------ccccc----c-CC---CCCCcccccCcEEEeecCccccc
Confidence 0 00000 0 00 01125899999999952
Q ss_pred ---CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh---HhcceEEEeCCc-
Q 000553 1204 ---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LRGRFAVVPQSP- 1276 (1428)
Q Consensus 1204 ---~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR~~i~~VpQdp- 1276 (1428)
+..++|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+|.+||.++...+... +|++++||||+|
T Consensus 294 ~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~ 372 (529)
T PRK15134 294 RTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPN 372 (529)
T ss_pred cccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCch
Confidence 12469999999999999999999999999999999999985 8999999999998766543 477899999998
Q ss_pred -cccCC-cHHHhcCcCC-----CCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000553 1277 -FLFEG-SLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVL 1348 (1428)
Q Consensus 1277 -~lf~g-TIR~NLdp~~-----~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL~~~~IL 1348 (1428)
.+|+. |+++|+.... ..+..+. +....+.++.+|++ ........+||||||||++|||||+.+|+||
T Consensus 373 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 447 (529)
T PRK15134 373 SSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLI 447 (529)
T ss_pred hhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEE
Confidence 36664 9999996421 0111111 11233445555775 3456667789999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1349 CLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1349 lLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+++++++++.
T Consensus 448 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 448 ILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQ 518 (529)
T ss_pred EeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCC
Confidence 9999999999999999999998764 27899999999999876 89999999999999999999987553
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=635.39 Aligned_cols=497 Identities=19% Similarity=0.227 Sum_probs=382.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000553 907 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986 (1428)
Q Consensus 907 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 986 (1428)
+.++..++....++.+....|..-..........++.+++++.++..++.+++.++....+.+....+++++++++++.|
T Consensus 14 ~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 93 (544)
T TIGR01842 14 FSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSAT 93 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34444455555566666555532111111112234445555566677778888888889999999999999999999999
Q ss_pred ccccccCChhhHHHHHhcChhhhhhhhhH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPF-ILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1428)
Q Consensus 987 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~ 1065 (1428)
+.. .|...+++++|++.+...+.. .+..++..++.++. ++++++.+|+++++++...+++..+..+..+..+.
T Consensus 94 ~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~ 167 (544)
T TIGR01842 94 LRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKK 167 (544)
T ss_pred ccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 842 356788999999999887655 34444444444333 34455666665544332222222222222232233
Q ss_pred HHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Q 000553 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA------------------SLWLSL 1127 (1428)
Q Consensus 1066 l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~------------------~~wl~~ 1127 (1428)
..+...+..+...+++.|+++|+++||+|+.|+.+.+++.+..++..+..+..... ..|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 247 (544)
T TIGR01842 168 PLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGA 247 (544)
T ss_pred HHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666788999999999999999999999999888777655544322111 111221
Q ss_pred HHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEE
Q 000553 1128 RLQ------VG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVT 1198 (1428)
Q Consensus 1128 ~l~------~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs 1198 (1428)
.+- +| .++.+...+...+..+...+.++.....+.+|+.++++.++|+.... .. -+.++.|+++||+
T Consensus 248 ~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~---~~~~~~i~~~~v~ 323 (544)
T TIGR01842 248 YLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PL---PEPEGHLSVENVT 323 (544)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CC---CCCCCeEEEEEEE
Confidence 111 22 22334455667778888889999999999999999998766542111 11 1235689999999
Q ss_pred EEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccc
Q 000553 1199 MRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1278 (1428)
Q Consensus 1199 ~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l 1278 (1428)
|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|+++++|||||++
T Consensus 324 ~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l 403 (544)
T TIGR01842 324 IVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVEL 403 (544)
T ss_pred EEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccc
Confidence 99976556899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecccc
Q 000553 1279 FEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355 (1428)
Q Consensus 1279 f~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS 1355 (1428)
|++|+|||+..+++ .+|++++++++.++++++++++ |+||.++|+|.+||||||||++||||++++|+|||||||||
T Consensus 404 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts 483 (544)
T TIGR01842 404 FPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNS 483 (544)
T ss_pred ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999999986654 7899999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhc
Q 000553 1356 NVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1356 ~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
+||++|++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||++
T Consensus 484 ~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 484 NLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred ccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999998875 6899999999999999999999999999999999999976
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=646.56 Aligned_cols=443 Identities=23% Similarity=0.328 Sum_probs=339.9
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC--CCeEEEEcC----------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML--THGSIHASG---------- 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~--~~G~i~~~~---------- 672 (1428)
.++++|+++.|.. . .+|+|+||++++|++++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~---~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFGG---V---KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeCC---e---EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 4889999999852 2 359999999999999999999999999999999999986 899998865
Q ss_pred ----cEEEEcCCCCCCcc-cHHHHHhcCCC------CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchH
Q 000553 673 ----SIAYVPQVPWILSG-TIRDNILFGKN------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1428)
Q Consensus 673 ----~i~y~~Q~p~l~~~-ti~~nI~~g~~------~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGG 737 (1428)
.++|++|+|.++.. |++||+.++.. .+.+ +.+++++..++.. .......+||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 147 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLG 147 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHH
Confidence 38999999987764 99999998642 1222 2233333333321 224456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecC
Q 000553 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 738 QkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 816 (1428)
|||||+||||+..+|+++||||||++||+...+.+++. +.....+++|+|++||+++.+.. ||+|++|++|+++..|+
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI-IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 99999999999999999999999999999999988876 33212357899999999999865 99999999999987765
Q ss_pred hHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHhhh
Q 000553 817 SADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFS 896 (1428)
Q Consensus 817 ~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~ 896 (1428)
.+++... +. . ..+.
T Consensus 227 ~~~~~~~------------------------------------------------~~------------~---~~~~--- 240 (506)
T PRK13549 227 AAGMTED------------------------------------------------DI------------I---TMMV--- 240 (506)
T ss_pred cccCCHH------------------------------------------------HH------------H---HHhh---
Confidence 3321000 00 0 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 897 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 976 (1428)
Q Consensus 897 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~ 976 (1428)
. .
T Consensus 241 ------------------------------~---~--------------------------------------------- 242 (506)
T PRK13549 241 ------------------------------G---R--------------------------------------------- 242 (506)
T ss_pred ------------------------------C---c---------------------------------------------
Confidence 0 0
Q ss_pred HHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 977 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056 (1428)
Q Consensus 977 ~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~ 1056 (1428)
+.
T Consensus 243 ---------~~--------------------------------------------------------------------- 244 (506)
T PRK13549 243 ---------EL--------------------------------------------------------------------- 244 (506)
T ss_pred ---------Cc---------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1057 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLALS 1136 (1428)
Q Consensus 1057 ~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl~l~ 1136 (1428)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECC-CCCccceeeeEE
Q 000553 1137 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKP-SLPAALHDINFT 1215 (1428)
Q Consensus 1137 ~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~-~~~~vL~~is~~ 1215 (1428)
.+ . .+.+ .++ +....|+++|++++|+. +..++|+|+||+
T Consensus 245 --------------------------~~---~--~~~~------~~~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~ 284 (506)
T PRK13549 245 --------------------------TA---L--YPRE------PHT---IGEVILEVRNLTAWDPVNPHIKRVDDVSFS 284 (506)
T ss_pred --------------------------cc---c--cccc------ccC---CCCceEEEecCccccccccccccccceeeE
Confidence 00 0 0000 000 11225999999999953 234699999999
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCC-CCCceEEECCeeCCCCCh-HhHhcceEEEeCCc---cccC-CcHHHhcCc
Q 000553 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNIINTPV-RDLRGRFAVVPQSP---FLFE-GSLRDNLDP 1289 (1428)
Q Consensus 1216 I~~GekvgIvGrTGSGKSTL~~~L~rl~~-~~~G~I~IDG~di~~i~~-~~lR~~i~~VpQdp---~lf~-gTIR~NLdp 1289 (1428)
|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+. +..|++++|+||+| .+|+ .|+.+|+..
T Consensus 285 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (506)
T PRK13549 285 LRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITL 364 (506)
T ss_pred EcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhh
Confidence 99999999999999999999999999998 599999999999865543 45677899999997 3665 599999964
Q ss_pred CC--CC------ChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHH
Q 000553 1290 FH--MN------DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360 (1428)
Q Consensus 1290 ~~--~~------~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~ 1360 (1428)
.. .. +..+ .+....+.++.+|++. ........||||||||++||||++.+|+||||||||++||+.
T Consensus 365 ~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~ 439 (506)
T PRK13549 365 AALDRFTGGSRIDDAA-----ELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVG 439 (506)
T ss_pred hhhhhhccCcccChHH-----HHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHh
Confidence 21 11 1111 1112344555557753 455666789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1361 TASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1361 te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..|+++++.
T Consensus 440 ~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 440 AKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 9999999998753 48999999999999876 8999999999999999998874
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-66 Score=646.61 Aligned_cols=437 Identities=22% Similarity=0.364 Sum_probs=337.2
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCc--cCCCeEEEEc------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM--MLTHGSIHAS------------ 671 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~--~~~~G~i~~~------------ 671 (1428)
++++|++++|.. . .+|+|+||++++|++++|+||||||||||+++|+|.. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG---K---EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC---e---EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 357889988842 2 3599999999999999999999999999999999996 7999999874
Q ss_pred -----------C-----------------------cEEEEcCC-CCCCc-ccHHHHHhcCCC---CC----hHHHHHHHH
Q 000553 672 -----------G-----------------------SIAYVPQV-PWILS-GTIRDNILFGKN---YD----PQSYSETLK 708 (1428)
Q Consensus 672 -----------~-----------------------~i~y~~Q~-p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~ 708 (1428)
| .++|++|+ +.+++ .|++||+.++.. ++ .++..++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 38999997 56665 599999987521 22 234555666
Q ss_pred HhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceE
Q 000553 709 ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTR 787 (1428)
Q Consensus 709 ~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ 787 (1428)
.++++... .....+|||||||||+||||++.+|+++||||||++||+.+.+++.+. +..... .++|+
T Consensus 155 ~~gl~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tv 222 (520)
T TIGR03269 155 MVQLSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA-LEEAVKASGISM 222 (520)
T ss_pred HcCChhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH-HHHHHHhcCcEE
Confidence 66665332 234568999999999999999999999999999999999999998775 332112 37899
Q ss_pred EEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCC
Q 000553 788 ILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSV 866 (1428)
Q Consensus 788 ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1428)
|+|||+++.+. .||+|++|++|+++..|+++++...
T Consensus 223 iivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~------------------------------------------- 259 (520)
T TIGR03269 223 VLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV------------------------------------------- 259 (520)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-------------------------------------------
Confidence 99999999986 4999999999999876654332100
Q ss_pred CchhhHHHHHHHHhcCcchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHH
Q 000553 867 SDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLC 946 (1428)
Q Consensus 867 ~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~ 946 (1428)
|. ..
T Consensus 260 -------------------------~~---------------------------------~~------------------ 263 (520)
T TIGR03269 260 -------------------------FM---------------------------------EG------------------ 263 (520)
T ss_pred -------------------------HH---------------------------------hh------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHH
Q 000553 947 IFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVG 1026 (1428)
Q Consensus 947 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~ 1026 (1428)
T Consensus 264 -------------------------------------------------------------------------------- 263 (520)
T TIGR03269 264 -------------------------------------------------------------------------------- 263 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHH
Q 000553 1027 LLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKE 1106 (1428)
Q Consensus 1027 ~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~ 1106 (1428)
..
T Consensus 264 ---------------------------------------~~--------------------------------------- 265 (520)
T TIGR03269 264 ---------------------------------------VS--------------------------------------- 265 (520)
T ss_pred ---------------------------------------ch---------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCC
Q 000553 1107 HVVLYQRTSYSELTASLWLSLRLQVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1186 (1428)
Q Consensus 1107 ~~~~~~~~~~~~~~~~~wl~~~l~~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~w 1186 (1428)
..+. +. ..+
T Consensus 266 -----------------------------------------------~~~~--------------~~------~~~---- 274 (520)
T TIGR03269 266 -----------------------------------------------EVEK--------------EC------EVE---- 274 (520)
T ss_pred -----------------------------------------------hhcc--------------cc------ccC----
Confidence 0000 00 000
Q ss_pred CCCccEEEEEEEEEECC---CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC-Ce---eCCC
Q 000553 1187 PFQGLIEFQNVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD-GL---NIIN 1259 (1428)
Q Consensus 1187 p~~g~I~f~nvs~~Y~~---~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~ID-G~---di~~ 1259 (1428)
+....++++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |. ++..
T Consensus 275 ~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 275 VGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTK 354 (520)
T ss_pred CCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccc
Confidence 01225999999999953 23469999999999999999999999999999999999999999999996 64 3333
Q ss_pred CC---hHhHhcceEEEeCCccccCC-cHHHhcCcC-C-CCChHHHHHHHHHccHHHHHHhCCCch-----hhhcCCCCCC
Q 000553 1260 TP---VRDLRGRFAVVPQSPFLFEG-SLRDNLDPF-H-MNDDLKIWSVLEKCHVKEEVEAVGLET-----FVKESGISFS 1328 (1428)
Q Consensus 1260 i~---~~~lR~~i~~VpQdp~lf~g-TIR~NLdp~-~-~~~d~ei~~aL~~~~l~~~i~~lgLdt-----~v~e~G~~LS 1328 (1428)
.+ ...+|++++|+||++.+|+. |+++|+... . ....++. +....+.++.+|++. ........||
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 429 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA-----RMKAVITLKMVGFDEEKAEEILDKYPDELS 429 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHH-----HHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence 32 23467789999999988875 999999631 1 1111111 111234445556643 3455666899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEe
Q 000553 1329 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQ 1405 (1428)
Q Consensus 1329 gGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~ 1405 (1428)
||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||||++|++|++++.
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998764 27899999999999986 899999999999999
Q ss_pred cChhHHhc
Q 000553 1406 GNPQTLLQ 1413 (1428)
Q Consensus 1406 g~p~eLl~ 1413 (1428)
|+++++.+
T Consensus 510 g~~~~~~~ 517 (520)
T TIGR03269 510 GDPEEIVE 517 (520)
T ss_pred CCHHHHHh
Confidence 99998864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=631.24 Aligned_cols=539 Identities=18% Similarity=0.216 Sum_probs=424.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1428)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1428)
.++.+++.+++.++...++.++..++.++.|++++.+++.+-.+.+......+++.++++.++..++...+.+...+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777788888888999999999999999999974322222222223333444444555556667778888999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH-HH--HHHhHHHHHHH
Q 000553 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY-LL--YTQVKFAFVSG 424 (1428)
Q Consensus 349 ~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~-lL--~~~lg~a~l~g 424 (1428)
++...+...+|+|.++.+.....+.+.|++.+.++.|++.+.+... .+..++...+.+++++. ++ .+.+++.++++
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999998887788899999999999999987643 34444444444333332 22 23333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1428)
Q Consensus 425 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1428)
+++.+.+..++.+++++..+++++..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+......+.
T Consensus 168 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 168 ---VPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344567788888899999999999999999999999999999999988888877665555544444333332
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhh
Q 000553 505 VFFWATT--PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582 (1428)
Q Consensus 505 ~~~~~~~--~~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 582 (1428)
..+.... ...+.++.+|+|.+..+.+|.+.+++...+...+..|+..++..+..+.++..+++||.++++.++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 2222111 22334455678888888999999999999999999999999999999999999999999999765421110
Q ss_pred hhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc
Q 000553 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~ 662 (1428)
.... ..+ ......++++|++|+|+.+++ +++|+|+||+++|||.++|+|+||||||||+++|+|+++
T Consensus 325 ~~~~-~~~---------~~~~~~i~~~~v~f~y~~~~~---~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 325 AHPK-TLP---------VPLRGEIEFEQVNFAYPARPD---QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred CCCc-cCC---------cCCCceEEEEEEEEECCCCCC---CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 0000 000 012346999999999975322 245999999999999999999999999999999999999
Q ss_pred CCCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCccccc
Q 000553 663 LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIG 728 (1428)
Q Consensus 663 ~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig 728 (1428)
|.+|+|.++| .|+||||+|++|++||||||.+|.+ .++++..++++.+++.++++.+|+|++|.+|
T Consensus 392 p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~ 471 (576)
T TIGR02204 392 PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471 (576)
T ss_pred CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeC
Confidence 9999999986 5999999999999999999999875 5778899999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeC
Q 000553 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1428)
Q Consensus 729 ~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~ 808 (1428)
++|.+||||||||++||||++++|+++|||||||+||+++++.+++. +.. ..+++|+|+|||+.+.++.+|+|++|++
T Consensus 472 ~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~-l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~ 549 (576)
T TIGR02204 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA-LET-LMKGRTTLIIAHRLATVLKADRIVVMDQ 549 (576)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999988876 443 4568999999999999999999999999
Q ss_pred CeEEEecChHHHHhccc
Q 000553 809 GQVKWIGSSADLAVSLY 825 (1428)
Q Consensus 809 G~i~~~g~~~el~~~~~ 825 (1428)
|++++.|+++++.+..+
T Consensus 550 g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 550 GRIVAQGTHAELIAKGG 566 (576)
T ss_pred CEEEeeecHHHHHHcCC
Confidence 99999999999876543
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-63 Score=630.74 Aligned_cols=532 Identities=18% Similarity=0.229 Sum_probs=414.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGH-LD-GYVLAIALGLTSILKSFFDTQYSFHLSKLKLK 349 (1428)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1428)
.+++.+++.++...++.++..++..+.|+++..++|.+....+. .. ...+++++++..++..++.....+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777778888999999999999999999976442221 11 12223334445556666666677778889999
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHhHHHHHHHH
Q 000553 350 LRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYL---LYTQVKFAFVSGL 425 (1428)
Q Consensus 350 ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~w~~p~~i~i~~~l---L~~~lg~a~l~g~ 425 (1428)
+...+...+|+|.++.+...+.+.+.|+++|.++.|++.+.+.... +..+....+.+++++.+ +.+.+++..++++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~ 175 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIF 175 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888889999999999999999875543 33333333333332222 2233333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000553 426 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC- 504 (1428)
Q Consensus 426 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~- 504 (1428)
++.+.+..+..++.++..++..+..++..+...|.++|+++||.++.|+.+.+++.+..++..+...+........
T Consensus 176 ---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (592)
T PRK10790 176 ---PAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLL 252 (592)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222334455566667777777888888899999999999999999999999888876654444433322222211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 000553 505 ---VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581 (1428)
Q Consensus 505 ---~~~~~~~~~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 581 (1428)
..+......+..++ ++.+ +..+.++.+.+++++.++..+..|+..++..+..+.++..+.+||.++++.++.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~-~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 330 (592)
T PRK10790 253 RPLLSLFSALILCGLLM-LFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG 330 (592)
T ss_pred HHHHHHHHHHHHHHHHH-HHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 11111111111112 2223 356789999999999999999999999999999999999999999999976532111
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCc
Q 000553 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~ 661 (1428)
... . ......++++|++|+|+.+ . ++|+|+||++++||.++|+|+||||||||+++|+|++
T Consensus 331 ~~~---~-----------~~~~~~i~~~~v~f~y~~~--~---~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 331 NDD---R-----------PLQSGRIDIDNVSFAYRDD--N---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred CCc---c-----------CCCCCeEEEEEEEEEeCCC--C---ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 000 0 1123469999999999742 2 3599999999999999999999999999999999999
Q ss_pred cCCCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCccccc
Q 000553 662 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728 (1428)
Q Consensus 662 ~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig 728 (1428)
+|++|+|.++| +|+||||+|++|++||+|||.+|++.++++..+++++++++++++.+|+|.+|.+|
T Consensus 392 ~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~ 471 (592)
T PRK10790 392 PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471 (592)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 99999999987 49999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeC
Q 000553 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1428)
Q Consensus 729 ~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~ 808 (1428)
++|.+||||||||++||||++++|+|+|||||||+||+++++.|.+. +.. +.+++|+|+||||++.++.||+|++|++
T Consensus 472 e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~-~~~~~tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA-LAA-VREHTTLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999887 433 4467999999999999999999999999
Q ss_pred CeEEEecChHHHHhccccCcc
Q 000553 809 GQVKWIGSSADLAVSLYSGFW 829 (1428)
Q Consensus 809 G~i~~~g~~~el~~~~~~~~~ 829 (1428)
|++++.|+++|+++..+.+..
T Consensus 550 G~i~~~G~~~~L~~~~~~y~~ 570 (592)
T PRK10790 550 GQAVEQGTHQQLLAAQGRYWQ 570 (592)
T ss_pred CEEEEEcCHHHHHhCCCHHHH
Confidence 999999999999876554443
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=641.94 Aligned_cols=446 Identities=21% Similarity=0.329 Sum_probs=338.0
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|.. . .+|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 5 YISMAGIGKSFGP---V---HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred eEEEeeeEEEcCC---e---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHH
Confidence 4789999999852 2 359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCcc-cHHHHHhcCCC-----C-----Ch----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccc
Q 000553 673 --SIAYVPQVPWILSG-TIRDNILFGKN-----Y-----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1428)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~-----~-----~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LS 735 (1428)
.++|++|++.++.. |++||+.++.. + +. ++..++++.+++.. .......+||
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS 147 (510)
T PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLS 147 (510)
T ss_pred HCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCC
Confidence 38999999987765 99999987632 0 11 12333444444432 1234556899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEe
Q 000553 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWI 814 (1428)
Q Consensus 736 GGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~ 814 (1428)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+. .||+|++|++|++++.
T Consensus 148 gG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 148 ISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI-MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999999999988876 3221234789999999999986 4999999999999887
Q ss_pred cChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHh
Q 000553 815 GSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAK 894 (1428)
Q Consensus 815 g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 894 (1428)
|+++++... +.. ....+.
T Consensus 227 g~~~~~~~~------------------------------------------------~~~---~~~~~~----------- 244 (510)
T PRK09700 227 GMVSDVSND------------------------------------------------DIV---RLMVGR----------- 244 (510)
T ss_pred cchhhCCHH------------------------------------------------HHH---HHhcCC-----------
Confidence 765443100 000 000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 895 FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974 (1428)
Q Consensus 895 ~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 974 (1428)
..
T Consensus 245 --------------------------------~~---------------------------------------------- 246 (510)
T PRK09700 245 --------------------------------EL---------------------------------------------- 246 (510)
T ss_pred --------------------------------Cc----------------------------------------------
Confidence 00
Q ss_pred HHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000553 975 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK 1054 (1428)
Q Consensus 975 h~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~ 1054 (1428)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK09700 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1055 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLA 1134 (1428)
Q Consensus 1055 i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl~ 1134 (1428)
. .
T Consensus 247 ------------~-----~------------------------------------------------------------- 248 (510)
T PRK09700 247 ------------Q-----N------------------------------------------------------------- 248 (510)
T ss_pred ------------c-----c-------------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeE
Q 000553 1135 LSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINF 1214 (1428)
Q Consensus 1135 l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~ 1214 (1428)
+ +....+. ..++ +.+..++++|+++.|. .+|+|+||
T Consensus 249 -----------------------------~---~~~~~~~-----~~~~---~~~~~l~~~~l~~~~~----~~l~~isl 284 (510)
T PRK09700 249 -----------------------------R---FNAMKEN-----VSNL---AHETVFEVRNVTSRDR----KKVRDISF 284 (510)
T ss_pred -----------------------------c---ccccccc-----cccC---CCCcEEEEeCccccCC----CcccceeE
Confidence 0 0000000 0000 0122599999998763 38999999
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh-HhHhcceEEEeCCc---cccCC-cHHHhcCc
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFAVVPQSP---FLFEG-SLRDNLDP 1289 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i~~VpQdp---~lf~g-TIR~NLdp 1289 (1428)
+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++++||||++ .+|++ |+++|+..
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (510)
T PRK09700 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI 364 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence 999999999999999999999999999999999999999999876543 45678999999984 57765 99999875
Q ss_pred CCCCChH------HH-HHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHH
Q 000553 1290 FHMNDDL------KI-WSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1361 (1428)
Q Consensus 1290 ~~~~~d~------ei-~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~t 1361 (1428)
....... .. ...-++....+.++.+|+. .........||||||||++|||||+++|+||||||||++||..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 444 (510)
T PRK09700 365 SRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444 (510)
T ss_pred ccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH
Confidence 3210000 00 0000111234455555775 34566667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhH
Q 000553 1362 ASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1362 e~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~e 1410 (1428)
.+.+.+.|++.. ++.|||+|||+++.+.. ||||++|++|++++.+++.+
T Consensus 445 ~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 445 KAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence 999999998753 48899999999998875 89999999999999887733
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-63 Score=623.25 Aligned_cols=505 Identities=19% Similarity=0.188 Sum_probs=391.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1428)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 351 (1428)
.+.+.+++.++...++.++..++..+.|++++.++|.+.........+.+.++++++.++..++.....+...+.+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777778888889999999999999999876532221111111222223445555666566667778889999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHH
Q 000553 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYL---LYTQVKFAFVSGLAI 427 (1428)
Q Consensus 352 ~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~w~~p~~i~i~~~l---L~~~lg~a~l~g~~v 427 (1428)
..+...+|+|.++++...+.+.++|+++|.++.|++++.+.... +..+....+.+++++.+ +.+.+++.+++++++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999888899999999999999999886553 34444444433333332 333444433333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF 507 (1428)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~ 507 (1428)
+.++ ...+..+..++..++..+..++..+...|.++|+++||.+++|+.+.+++++..++..+...+.....+....+
T Consensus 166 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (529)
T TIGR02868 166 AGFV--APLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAA 243 (529)
T ss_pred HHHH--HHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 12233333455567777888999999999999999999999999999999887766666655555555444333
Q ss_pred HHHHHHH--HHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhh
Q 000553 508 WATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQA 585 (1428)
Q Consensus 508 ~~~~~~~--~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~ 585 (1428)
......+ +.++.++.|.+.++.++.+.+.+.+.+...+..|+..++..+..+.++.++.+|+.++++.++..+.....
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 323 (529)
T TIGR02868 244 QLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVP 323 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Confidence 3332222 33456677777888899999999999999999999999999999999999999999999765432110000
Q ss_pred cCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCC
Q 000553 586 ANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1428)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~ 665 (1428)
.+. ........|+++|++|+|+++ ++ +|+|+||++++||.++||||||||||||+++|+|+++|++
T Consensus 324 --~~~-------~~~~~~~~I~~~~vsf~Y~~~--~~---vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~ 389 (529)
T TIGR02868 324 --AAG-------ALGLGKPTLELRDLSFGYPGS--PP---VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ 389 (529)
T ss_pred --CCc-------ccCCCCceEEEEEEEEecCCC--Cc---eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 000 001123469999999999743 22 5999999999999999999999999999999999999999
Q ss_pred eEEEEcC------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 666 GSIHASG------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 666 G~i~~~~------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
|+|.++| +||||||+|++|++||||||.+|.+ .+++++.++++.|+++++++.+|+|++|.+||+|.
T Consensus 390 G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 469 (529)
T TIGR02868 390 GEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGA 469 (529)
T ss_pred cEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccC
Confidence 9999998 7999999999999999999999865 68899999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCc
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~ 794 (1428)
+||||||||++||||++++|+|+|||||||+||+++++.|.+.+ .. ..+++|+|+||||+
T Consensus 470 ~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~-~~~~~TvIiItHrl 529 (529)
T TIGR02868 470 RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LA-ALSGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HH-hcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999884 33 56789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=637.27 Aligned_cols=436 Identities=21% Similarity=0.297 Sum_probs=336.3
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|.. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~i~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 4 LLQLKGIDKAFPG---V---KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred eEEEeeeEEEeCC---e---EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 4789999998852 2 359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCc-ccHHHHHhcCCC-------CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHH
Q 000553 673 --SIAYVPQVPWILS-GTIRDNILFGKN-------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1428)
Q Consensus 673 --~i~y~~Q~p~l~~-~ti~~nI~~g~~-------~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQ 738 (1428)
.++|++|++.++. .|++||+.++.. ++.+ +..++++.+++... ......+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~ 146 (501)
T PRK10762 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGE 146 (501)
T ss_pred hCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHH
Confidence 3899999997765 499999998642 1222 23334444444221 234456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecCh
Q 000553 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817 (1428)
Q Consensus 739 kqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~ 817 (1428)
|||++||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 147 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 147 QQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV-IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999999999988765 3221234789999999999886 4999999999999876643
Q ss_pred HHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHhhhh
Q 000553 818 ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897 (1428)
Q Consensus 818 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 897 (1428)
+++.. ++..
T Consensus 226 ~~~~~-----------------------------------------------------~~~~------------------ 234 (501)
T PRK10762 226 ADLTE-----------------------------------------------------DSLI------------------ 234 (501)
T ss_pred CcCCH-----------------------------------------------------HHHH------------------
Confidence 22100 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 977 (1428)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ 977 (1428)
..+...
T Consensus 235 -------------------------~~~~~~------------------------------------------------- 240 (501)
T PRK10762 235 -------------------------EMMVGR------------------------------------------------- 240 (501)
T ss_pred -------------------------HHhcCC-------------------------------------------------
Confidence 000000
Q ss_pred HHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1057 (1428)
Q Consensus 978 ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~ 1057 (1428)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1058 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLALSY 1137 (1428)
Q Consensus 1058 ~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl~l~~ 1137 (1428)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEe
Q 000553 1138 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIE 1217 (1428)
Q Consensus 1138 ~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~ 1217 (1428)
+.. ..++.. ..+ |.+-.++++|+++ ++|+|+||+|+
T Consensus 241 --------------------------~~~---~~~~~~-----~~~---~~~~~l~~~~l~~-------~~l~~vsl~i~ 276 (501)
T PRK10762 241 --------------------------KLE---DQYPRL-----DKA---PGEVRLKVDNLSG-------PGVNDVSFTLR 276 (501)
T ss_pred --------------------------Ccc---cccccc-----ccC---CCCcEEEEeCccc-------CCcccceEEEc
Confidence 000 000000 000 1112589999984 37999999999
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh-HhHhcceEEEeCCc---cccC-CcHHHhcCcCCC
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFAVVPQSP---FLFE-GSLRDNLDPFHM 1292 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i~~VpQdp---~lf~-gTIR~NLdp~~~ 1292 (1428)
+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|++++||||+| .+|. .|+++|+.....
T Consensus 277 ~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~ 356 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTAL 356 (501)
T ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhh
Confidence 999999999999999999999999999999999999999977654 34678899999997 3555 599999964210
Q ss_pred ---------CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHH
Q 000553 1293 ---------NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362 (1428)
Q Consensus 1293 ---------~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te 1362 (1428)
.+..+. .....+.++.+|++ .........||||||||++|||||+.+|+||||||||++||+.+.
T Consensus 357 ~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~ 431 (501)
T PRK10762 357 RYFSRAGGSLKHADE-----QQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAK 431 (501)
T ss_pred hhhcccccccCHHHH-----HHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHH
Confidence 111111 11234455555774 345666778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1363 SILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1363 ~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 432 ~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 432 KEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 99999998864 47899999999999876 8999999999999999988764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=676.07 Aligned_cols=248 Identities=22% Similarity=0.284 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHhhh--cCCccccccCCCCCCCCCCCc--cEEEEEEEEEEC--CCCCccceeeeEEEeCCcEEEEEC
Q 000553 1153 TETEKEMVSLERVLEYM--DVPQEELCGYQSLSPDWPFQG--LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVG 1226 (1428)
Q Consensus 1153 ~~~e~~~~sveRi~~~~--~~~~e~~~~~~~~~~~wp~~g--~I~f~nvs~~Y~--~~~~~vL~~is~~I~~GekvgIvG 1226 (1428)
.+.|..+.++||..++. +.+.|.......... .+.+| .++++||+++|+ ++.+.+|+|||++|+|||++||+|
T Consensus 718 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G 796 (1394)
T TIGR00956 718 ETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDM-EKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMG 796 (1394)
T ss_pred cccccccccccccccCCCCccccccccccccccc-cccCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEEC
Confidence 44555667888888763 333332111111000 01134 479999999995 334579999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCC---CCCceEEECCeeCCCCChHhHhcceEEEeCCccc-cCCcHHHhcCcCC------CCChH
Q 000553 1227 RTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNLDPFH------MNDDL 1296 (1428)
Q Consensus 1227 rTGSGKSTL~~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l-f~gTIR~NLdp~~------~~~d~ 1296 (1428)
|||||||||+++|.|+.+ |++|+|.+||.++. ..+|++++||||++.+ +..||||||++.. ..+++
T Consensus 797 ~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~ 872 (1394)
T TIGR00956 797 ASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKS 872 (1394)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHH
Confidence 999999999999999998 78899999999985 2578999999999765 4569999997421 23333
Q ss_pred H----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC-EEEEeccccCCCHHHHHHHHHHHHH
Q 000553 1297 K----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK-VLCLDECTANVDAQTASILQNAISS 1371 (1428)
Q Consensus 1297 e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~-ILlLDEaTS~lD~~te~~Iq~~i~~ 1371 (1428)
+ +.++++..++.+ ..|+.+++.|.+||||||||++|||||+.+|+ ||+||||||+||..+...|++.|++
T Consensus 873 ~~~~~v~~~l~~l~L~~-----~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~ 947 (1394)
T TIGR00956 873 EKMEYVEEVIKLLEMES-----YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947 (1394)
T ss_pred HHHHHHHHHHHHcCChh-----hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 3 334445444433 25788888888999999999999999999997 9999999999999999999999988
Q ss_pred h-cCCcEEEEeccChhhh--hhcCEEEEEeCC-eEEEecChhH
Q 000553 1372 E-CKGMTVITIAHRISTV--LNMDEILILDHG-HLVEQGNPQT 1410 (1428)
Q Consensus 1372 ~-~~~~TvI~IaHrl~ti--~~~DrI~Vl~~G-~ive~g~p~e 1410 (1428)
. .+++|||+++|+++.. ..||+|++|++| +++++|++.+
T Consensus 948 la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 948 LADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 7 4689999999999974 468999999997 9999999743
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=632.64 Aligned_cols=541 Identities=19% Similarity=0.212 Sum_probs=437.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1428)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1428)
.++..++.+++.+....+..++..++.++.|++++.++|.+-...+....+.++++++++.++..++.....+...+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTS 208 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777788888899999999999999999999987543333344445566666677778888888888999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000553 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 427 (1428)
Q Consensus 349 ~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v 427 (1428)
++...+...+|+|.++++...+.+.++|++++.+ .|++.+.++.. .+..+....+.+++.+.+++..-++.+++.+++
T Consensus 209 ~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 287 (694)
T TIGR01846 209 RIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGS 287 (694)
T ss_pred HHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998889999999998 69999988653 333333222322222333333333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF 507 (1428)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~ 507 (1428)
+++.+.+..++.+++++..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++.+.-++..+...+..........+
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (694)
T TIGR01846 288 LVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQA 367 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667777888888888999999999999999999999999999999888887666666655555554444333
Q ss_pred HHHHHH--HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhh
Q 000553 508 WATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQA 585 (1428)
Q Consensus 508 ~~~~~~--~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~ 585 (1428)
...... .+.++.+|+|.+..+.+|.|.++++..+...+..|+..+...+..+.++.++++|+.++++.++..+.. .
T Consensus 368 ~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~- 445 (694)
T TIGR01846 368 IELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-G- 445 (694)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-C-
Confidence 322222 233466788888888999999999999999999999999999999999999999999999765432210 0
Q ss_pred cCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCC
Q 000553 586 ANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1428)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~ 665 (1428)
... .+..+..|+++|++|+|+++. +.+|+|+||++++||.++|+|+||||||||+++|+|+++|++
T Consensus 446 --~~~--------~~~~~~~i~~~~vsf~y~~~~----~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 446 --LAA--------LPELRGAITFENIRFRYAPDS----PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred --CCC--------CCCCCCeEEEEEEEEEcCCCC----ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 000 012235799999999997432 235999999999999999999999999999999999999999
Q ss_pred eEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCC
Q 000553 666 GSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731 (1428)
Q Consensus 666 G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g 731 (1428)
|+|.++| .|+||+|+|++|++||+|||.++.+ .++++..++++.+++++.++.+|+|.+|.+|++|
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 9999987 4899999999999999999999864 6788999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeE
Q 000553 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811 (1428)
Q Consensus 732 ~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i 811 (1428)
.+||||||||++||||++++|+|+|||||||+||+++++.+.+. +.. ..+++|+|++||+++.++.||+|++|++|++
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i 669 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN-MRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQI 669 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999887 433 4568999999999999999999999999999
Q ss_pred EEecChHHHHhccccCc
Q 000553 812 KWIGSSADLAVSLYSGF 828 (1428)
Q Consensus 812 ~~~g~~~el~~~~~~~~ 828 (1428)
+++|+++++++..+.+.
T Consensus 670 ~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 670 AESGRHEELLALQGLYA 686 (694)
T ss_pred EEeCCHHHHHHcCChHH
Confidence 99999999987655443
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-65 Score=634.63 Aligned_cols=451 Identities=21% Similarity=0.362 Sum_probs=345.0
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|.. +.+|+|+||++++|++++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 35899999999853 2359999999999999999999999999999999999999999999875
Q ss_pred ---cEEEEcCCCCCCcc-cHHHHHhcCCCCC---hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 673 ---SIAYVPQVPWILSG-TIRDNILFGKNYD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~~---~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
.++|++|++.++.. |++||+.++.... +++..++++..++... ......+|||||||||+||
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la 152 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEIL 152 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHH
Confidence 38999999987765 9999999875322 2344555666655422 2334568999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHhcc
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSL 824 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~~~ 824 (1428)
||++.+|+++||||||++||+...+++.+. +.....+|+|+|++||+++.+. .||+|++|++|++++.|+++++....
T Consensus 153 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (510)
T PRK15439 153 RGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231 (510)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH
Confidence 999999999999999999999999988876 3321234789999999999876 49999999999999888766542100
Q ss_pred ccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHhhhhHHHHHHH
Q 000553 825 YSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVI 904 (1428)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~ 904 (1428)
.. .. +.
T Consensus 232 ------------------------------------------------~~---~~------------~~----------- 237 (510)
T PRK15439 232 ------------------------------------------------II---QA------------IT----------- 237 (510)
T ss_pred ------------------------------------------------HH---HH------------Hh-----------
Confidence 00 00 00
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000553 905 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1428)
Q Consensus 905 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 984 (1428)
.. .....
T Consensus 238 ----------------------~~--~~~~~------------------------------------------------- 244 (510)
T PRK15439 238 ----------------------PA--AREKS------------------------------------------------- 244 (510)
T ss_pred ----------------------Cc--ccccc-------------------------------------------------
Confidence 00 00000
Q ss_pred CCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1428)
Q Consensus 985 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr 1064 (1428)
T Consensus 245 -------------------------------------------------------------------------------- 244 (510)
T PRK15439 245 -------------------------------------------------------------------------------- 244 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLALSYAAPIVSL 1144 (1428)
Q Consensus 1065 ~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl~l~~~~~~~~~ 1144 (1428)
.+.
T Consensus 245 -~~~---------------------------------------------------------------------------- 247 (510)
T PRK15439 245 -LSA---------------------------------------------------------------------------- 247 (510)
T ss_pred -ccc----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEE
Q 000553 1145 LGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGI 1224 (1428)
Q Consensus 1145 l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgI 1224 (1428)
..+.. ...|... ...+ +.+-.++++|++. .+|+|+||+|++||++||
T Consensus 248 -----------------~~~~~--~~~~~~~----~~~~---~~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l 294 (510)
T PRK15439 248 -----------------SQKLW--LELPGNR----RQQA---AGAPVLTVEDLTG-------EGFRNISLEVRAGEILGL 294 (510)
T ss_pred -----------------ccccc--ccccccc----cccC---CCCceEEEeCCCC-------CCccceeEEEcCCcEEEE
Confidence 00000 0000000 0000 1122589999983 269999999999999999
Q ss_pred ECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh-HhcceEEEeCCc---cccCC-cHHHhcCcC--C---CC-
Q 000553 1225 VGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVVPQSP---FLFEG-SLRDNLDPF--H---MN- 1293 (1428)
Q Consensus 1225 vGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i~~VpQdp---~lf~g-TIR~NLdp~--~---~~- 1293 (1428)
+|+||||||||+++|.|+.+|++|+|.+||.++...+... .|++++|+||++ .+|+. |+++|+... . ..
T Consensus 295 ~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~ 374 (510)
T PRK15439 295 AGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWI 374 (510)
T ss_pred ECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhcccc
Confidence 9999999999999999999999999999999998776554 467899999996 36654 999998432 1 00
Q ss_pred ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHh
Q 000553 1294 DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1372 (1428)
Q Consensus 1294 ~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~ 1372 (1428)
...+. +....+.++.+|++ .........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.
T Consensus 375 ~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 449 (510)
T PRK15439 375 KPARE-----NAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449 (510)
T ss_pred ChHHH-----HHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHH
Confidence 11111 11234555666775 4566667789999999999999999999999999999999999999999999876
Q ss_pred c-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1373 C-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1373 ~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
. +++|||+|+|+++.+.+ ||||++|++|++++.|+++++..+
T Consensus 450 ~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 450 AAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCHH
Confidence 4 48999999999999987 899999999999999999887654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-65 Score=634.21 Aligned_cols=447 Identities=21% Similarity=0.298 Sum_probs=334.0
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC--CCeEEEEcC-----------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML--THGSIHASG----------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~--~~G~i~~~~----------- 672 (1428)
++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~---~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFGG---V---KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeCC---e---EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 578899998852 2 359999999999999999999999999999999999986 799998865
Q ss_pred ---cEEEEcCCCCCCcc-cHHHHHhcCCCC-------ChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchH
Q 000553 673 ---SIAYVPQVPWILSG-TIRDNILFGKNY-------DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~-------~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGG 737 (1428)
.++|++|+|.++.. |++||+.++..+ +.+ +.+++++.+++.... ......+||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG 145 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGG 145 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHH
Confidence 38999999987765 999999886431 111 223344444332110 11234589999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecC
Q 000553 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 738 QkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 816 (1428)
|||||+||||++.+|+++||||||++||+...+.+.+. +.....+|+|+|++||+++++.. ||+|++|++|+++..|+
T Consensus 146 ~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (500)
T TIGR02633 146 QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI-IRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKD 224 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecC
Confidence 99999999999999999999999999999999998876 33212357899999999999865 99999999999976543
Q ss_pred hHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHhhh
Q 000553 817 SADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFS 896 (1428)
Q Consensus 817 ~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~ 896 (1428)
.+++. . . . ....+
T Consensus 225 ~~~~~------------------------------------------------~-----~-~---------~~~~~---- 237 (500)
T TIGR02633 225 MSTMS------------------------------------------------E-----D-D---------IITMM---- 237 (500)
T ss_pred cccCC------------------------------------------------H-----H-H---------HHHHH----
Confidence 21100 0 0 0 00000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 897 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 976 (1428)
Q Consensus 897 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~ 976 (1428)
.. .
T Consensus 238 -----------------------------~~---~--------------------------------------------- 240 (500)
T TIGR02633 238 -----------------------------VG---R--------------------------------------------- 240 (500)
T ss_pred -----------------------------hC---c---------------------------------------------
Confidence 00 0
Q ss_pred HHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 977 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056 (1428)
Q Consensus 977 ~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~ 1056 (1428)
+
T Consensus 241 ---------~---------------------------------------------------------------------- 241 (500)
T TIGR02633 241 ---------E---------------------------------------------------------------------- 241 (500)
T ss_pred ---------c----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1057 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLALS 1136 (1428)
Q Consensus 1057 ~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl~l~ 1136 (1428)
.
T Consensus 242 --------------------~----------------------------------------------------------- 242 (500)
T TIGR02633 242 --------------------I----------------------------------------------------------- 242 (500)
T ss_pred --------------------c-----------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCC-CCccceeeeEE
Q 000553 1137 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFT 1215 (1428)
Q Consensus 1137 ~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~is~~ 1215 (1428)
+ . ..+.+. .+ +.+-.++++|++++|+.+ ...+|+|+||+
T Consensus 243 -------------------~-------~-----~~~~~~-----~~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~ 282 (500)
T TIGR02633 243 -------------------T-------S-----LYPHEP-----HE----IGDVILEARNLTCWDVINPHRKRVDDVSFS 282 (500)
T ss_pred -------------------c-------c-----cccccc-----cC----CCCceEEEeCCcccccccccccccccceeE
Confidence 0 0 000000 00 011259999999999432 24699999999
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCeeCCCCC-hHhHhcceEEEeCCc---cccC-CcHHHhcCc
Q 000553 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPI-CGGQILVDGLNIINTP-VRDLRGRFAVVPQSP---FLFE-GSLRDNLDP 1289 (1428)
Q Consensus 1216 I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-~~G~I~IDG~di~~i~-~~~lR~~i~~VpQdp---~lf~-gTIR~NLdp 1289 (1428)
|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+ ...+|++++++||++ .+|+ .|+++|+..
T Consensus 283 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~ 362 (500)
T TIGR02633 283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITL 362 (500)
T ss_pred EeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcc
Confidence 999999999999999999999999999995 8999999999986543 356788999999996 3666 499999975
Q ss_pred CCC--CCh-HHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHH
Q 000553 1290 FHM--NDD-LKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365 (1428)
Q Consensus 1290 ~~~--~~d-~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~I 1365 (1428)
... ... ..+...-.+....+.++.+|+.. ........||||||||++|||||+++|++|||||||++||+.+.+.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 363 SVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH
Confidence 311 000 00000011122334555556642 34555568999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHH
Q 000553 1366 QNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1366 q~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eL 1411 (1428)
.+.|++.. ++.|||+|||+++.+.. ||||++|++|+++..++..++
T Consensus 443 ~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 443 YKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99987753 47899999999999976 799999999999988766554
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-62 Score=614.25 Aligned_cols=520 Identities=19% Similarity=0.224 Sum_probs=414.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 276 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM 355 (1428)
Q Consensus 276 ~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 355 (1428)
.+++.++..+++.++..++..+.|++++.++|.+....+....+.+++.++++.++..++.....+...+.+.++...+.
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777888889999999999999999999764322222334455556666777788888888888999999999999
Q ss_pred HHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHH
Q 000553 356 TIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGV--ALYLLYTQVKFAFVSGLAITILL 431 (1428)
Q Consensus 356 ~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~w~~p~~i~i--~~~lL~~~lg~a~l~g~~v~~~~ 431 (1428)
..+|+|.++++... .+...+.++.|++++.+.... +..+...++.++. .++.+.+.+++.+++++++ .
T Consensus 83 ~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l---~ 154 (544)
T TIGR01842 83 QPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVV---L 154 (544)
T ss_pred HHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---H
Confidence 99999999998732 245667788999999876543 3334444443333 2333344444444433322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 432 IPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 511 (1428)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~ 511 (1428)
..+..+..++.++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..++..+...+.....+....+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445566777778888999999999999999999999999999999999888877666555554444443333332222
Q ss_pred H--HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCC
Q 000553 512 P--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSP 589 (1428)
Q Consensus 512 ~--~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~ 589 (1428)
. ..+.++++|.|.+.++.+|++.+++++.++..+..|+..+...+..+.++..+.+||.++++.++..+.. .+
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-----~~ 309 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-----MP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-----CC
Confidence 2 2234566788888888999999999999999999999999999999999999999999999765432110 00
Q ss_pred CcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEE
Q 000553 590 SYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669 (1428)
Q Consensus 590 ~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~ 669 (1428)
. +..+..++++|++|+|+..+ +++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.
T Consensus 310 ~---------~~~~~~i~~~~v~~~y~~~~----~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 310 L---------PEPEGHLSVENVTIVPPGGK----KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred C---------CCCCCeEEEEEEEEEcCCCC----ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 0 11234699999999997431 2359999999999999999999999999999999999999999999
Q ss_pred EcC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccc
Q 000553 670 ASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1428)
Q Consensus 670 ~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LS 735 (1428)
++| .++||||+|++|++|++|||.++.+ .+++++.++++.+++++.++.+|+|++|.+|++|.+||
T Consensus 377 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS 456 (544)
T TIGR01842 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456 (544)
T ss_pred ECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC
Confidence 876 5999999999999999999986554 78889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEec
Q 000553 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 736 GGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g 815 (1428)
||||||++||||++++|+++|||||||+||+++++.+.+. +.....+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFG 535 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeC
Confidence 9999999999999999999999999999999999999886 333123578999999999999999999999999999999
Q ss_pred ChHHHHh
Q 000553 816 SSADLAV 822 (1428)
Q Consensus 816 ~~~el~~ 822 (1428)
+++++.+
T Consensus 536 ~~~~l~~ 542 (544)
T TIGR01842 536 ERDEVLA 542 (544)
T ss_pred CHHHHhh
Confidence 9999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-62 Score=618.79 Aligned_cols=532 Identities=19% Similarity=0.206 Sum_probs=411.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352 (1428)
Q Consensus 273 l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 352 (1428)
.++.++..++..++..++..++.++.|+++..++|.+.++.. .. .+++.++++.++..+......+...++..+++.
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--IF-PLLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677778888899999999999999999998764321 11 112222222233333333445556778888888
Q ss_pred HHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Q 000553 353 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVA---LYLLYTQVKFAFVSGLAIT 428 (1428)
Q Consensus 353 ~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~---~~lL~~~lg~a~l~g~~v~ 428 (1428)
.+...+|+|.++++.....+.+.|++++.++.|++.+..... .+..+....+..++. ++.+.+.+++..+++ +
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~---~ 166 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVL---G 166 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 899999999999999888888999999999999999875432 333333332222222 223333344433333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1428)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1428)
++...+..++.+++.+.+++.++..++..+...|.++|+++||.++.|+.+.+++.+.-++-.+...+..........+.
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566777888888889999999999999999999999999999998777766554333333222222222222221
Q ss_pred H--HHHHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhc
Q 000553 509 A--TTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1428)
Q Consensus 509 ~--~~~~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 586 (1428)
. .....+.++++++|.+..+.+|++.+++++.++..+..|+..+...+..+..+..+++|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-- 324 (588)
T PRK13657 247 RAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG-- 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC--
Confidence 1 112233456778888888899999999999999999999999999999999999999999999876432111000
Q ss_pred CCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCe
Q 000553 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1428)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G 666 (1428)
... .......|+++|++|+|+.+ ++ +|+|+||++++|+.++|+|+||||||||+++|+|+++|++|
T Consensus 325 -~~~--------~~~~~~~I~~~~vsf~y~~~--~~---iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 325 -AID--------LGRVKGAVEFDDVSFSYDNS--RQ---GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred -CCC--------cCCCCCeEEEEEEEEEeCCC--Cc---eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 000 01123469999999999742 23 59999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
+|.++| .|+||||+|++|++||||||.++++ .++++..++++.+++++.+..+|+|.+|.+|++|.
T Consensus 391 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~ 470 (588)
T PRK13657 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGR 470 (588)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCC
Confidence 999986 6999999999999999999999964 67888999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEE
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 812 (1428)
+||||||||++||||++++|+|+|||||||+||+++++.+++.+ .. ..+++|+|+||||++.++.||+|++|++|++.
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l-~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL-DE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998873 33 44679999999999999999999999999999
Q ss_pred EecChHHHHhccccCc
Q 000553 813 WIGSSADLAVSLYSGF 828 (1428)
Q Consensus 813 ~~g~~~el~~~~~~~~ 828 (1428)
++|+++++++..+.+.
T Consensus 549 ~~g~~~~l~~~~~~y~ 564 (588)
T PRK13657 549 ESGSFDELVARGGRFA 564 (588)
T ss_pred EeCCHHHHHHCCChHH
Confidence 9999999986654433
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-62 Score=615.16 Aligned_cols=534 Identities=19% Similarity=0.209 Sum_probs=415.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSG---HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1428)
Q Consensus 273 l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~-~~~~---~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1428)
+.+.+++.++..++..++..++..+.|.+++.+++... .... .......+++++++.++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888899999999999999999998642 2211 0111112333444556677777777778888999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHhHHHHHHH
Q 000553 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY---LLYTQVKFAFVSG 424 (1428)
Q Consensus 349 ~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~---lL~~~lg~a~l~g 424 (1428)
++...+...+|+|.++++....++.+.|++++.++.|++.+..+.. .+..+....+.+++++. .+.+.+++..+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888999999999999999998664 34444444444433332 3333444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1428)
Q Consensus 425 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1428)
++++ ...+..++.++.++..++..+..++..+.+.|.++|+++||.||.|+.+.+++++..++-.+...+.....+..
T Consensus 170 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLLL--LLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22233455677778888888999999999999999999999999999988888877655444444444443333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 000553 505 VFFWATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSL-ISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581 (1428)
Q Consensus 505 ~~~~~~~~--~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l-~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 581 (1428)
..+..... ..+.++.++.+. .++.++.+..++++.+..++ ..|+..++..+..+.++.++.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22222221 122334556665 46678999888877665443 468888899999999999999999999976532111
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCc
Q 000553 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~ 661 (1428)
... .+. ......++++|++|+|++++ +++|+|+||++++||.++|+||||||||||+++|+|++
T Consensus 327 ~~~---~~~---------~~~~~~i~~~~v~f~y~~~~----~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 327 PTT---STA---------AADQVSLTLNNVSFTYPDQP----QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred Ccc---cCC---------CCCCCeEEEEEEEEECCCCC----CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 000 000 11235699999999997431 23599999999999999999999999999999999999
Q ss_pred cCCCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccc
Q 000553 662 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYI 727 (1428)
Q Consensus 662 ~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~i 727 (1428)
+|++|+|.++| .|+||+|+|++|++||+|||.++.+ .++++..++++.++++++++. |+|++|.+
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~v 469 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWL 469 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchh
Confidence 99999999986 4999999999999999999999875 688899999999999999999 99999999
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEe
Q 000553 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMD 807 (1428)
Q Consensus 728 g~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~ 807 (1428)
||+|.+||||||||++||||++++|+++|||||||+||+++++.+.+. +.. ..+++|+|+|||+++.++.||+|++|+
T Consensus 470 ge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~-~~~~~tviiitHr~~~~~~~d~i~~l~ 547 (574)
T PRK11160 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAE-HAQNKTVLMITHRLTGLEQFDRICVMD 547 (574)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecChhHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999887 433 456899999999999999999999999
Q ss_pred CCeEEEecChHHHHhccccCc
Q 000553 808 KGQVKWIGSSADLAVSLYSGF 828 (1428)
Q Consensus 808 ~G~i~~~g~~~el~~~~~~~~ 828 (1428)
+|++++.|+++|+++..+.+.
T Consensus 548 ~G~i~~~g~~~~l~~~~g~y~ 568 (574)
T PRK11160 548 NGQIIEQGTHQELLAQQGRYY 568 (574)
T ss_pred CCeEEEeCCHHHHHhcCcHHH
Confidence 999999999999987765443
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=625.23 Aligned_cols=472 Identities=17% Similarity=0.273 Sum_probs=333.5
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--cEEEEcCCCCC
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWI 683 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--~i~y~~Q~p~l 683 (1428)
++++|+++.|+. +++|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.+++ .|+|++|++.+
T Consensus 2 l~i~~ls~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~ 75 (530)
T PRK15064 2 LSTANITMQFGA------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFA 75 (530)
T ss_pred EEEEEEEEEeCC------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCc
Confidence 678999999853 2359999999999999999999999999999999999999999999975 69999999877
Q ss_pred Ccc-cHHHHHhcCCCC-------------------C--------------------hHHHHHHHHHhcchHHHhcccCCC
Q 000553 684 LSG-TIRDNILFGKNY-------------------D--------------------PQSYSETLKACTLDVDISLMVGGD 723 (1428)
Q Consensus 684 ~~~-ti~~nI~~g~~~-------------------~--------------------~~~~~~v~~~c~l~~di~~l~~gd 723 (1428)
+.. |++||+.++... + +++..++++..++....
T Consensus 76 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------- 148 (530)
T PRK15064 76 FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ------- 148 (530)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH-------
Confidence 654 999999875310 0 01112222222222111
Q ss_pred cccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCE
Q 000553 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADM 802 (1428)
Q Consensus 724 ~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~ 802 (1428)
......+|||||||||+||||++.+|+++||||||++||+...+++.+. +. ..++|+|+|||+++.+.. ||+
T Consensus 149 ---~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~---~~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 149 ---HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV-LN---ERNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred ---hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH-HH---hCCCeEEEEeCCHHHHHhhcce
Confidence 1234568999999999999999999999999999999999999988876 32 247899999999999865 999
Q ss_pred EEEEeCCeEE-EecChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhc
Q 000553 803 VVVMDKGQVK-WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKE 881 (1428)
Q Consensus 803 i~~l~~G~i~-~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 881 (1428)
|++|++|+++ +.|+++++...... .. ... . ...+..+++.++
T Consensus 222 i~~l~~g~i~~~~g~~~~~~~~~~~----------------~~-------~~~-----~--------~~~~~~~~~~~~- 264 (530)
T PRK15064 222 MADLDYGELRVYPGNYDEYMTAATQ----------------AR-------ERL-----L--------ADNAKKKAQIAE- 264 (530)
T ss_pred EEEEeCCEEEEecCCHHHHHHHHHH----------------HH-------HHH-----H--------HHHHHHHHHHHH-
Confidence 9999999994 78888876431000 00 000 0 000000000000
Q ss_pred CcchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 000553 882 GRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAF 961 (1428)
Q Consensus 882 g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 961 (1428)
+..|..... ..
T Consensus 265 ----------------------------------------~~~~~~~~~---~~-------------------------- 275 (530)
T PRK15064 265 ----------------------------------------LQSFVSRFS---AN-------------------------- 275 (530)
T ss_pred ----------------------------------------HHHHHHHhh---cc--------------------------
Confidence 000000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000553 962 SFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFF 1041 (1428)
Q Consensus 962 ~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 1041 (1428)
+ +
T Consensus 276 -----------------------~------------------~------------------------------------- 277 (530)
T PRK15064 276 -----------------------A------------------S------------------------------------- 277 (530)
T ss_pred -----------------------c------------------h-------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1042 LLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121 (1428)
Q Consensus 1042 ~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1121 (1428)
+ ........+
T Consensus 278 ---------------~-~~~~~~~~~------------------------------------------------------ 287 (530)
T PRK15064 278 ---------------K-AKQATSRAK------------------------------------------------------ 287 (530)
T ss_pred ---------------h-hHHHHHHHH------------------------------------------------------
Confidence 0 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-ccccCCC-CCCCCCCCccEEEEEEEE
Q 000553 1122 SLWLSLRLQVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE-ELCGYQS-LSPDWPFQGLIEFQNVTM 1199 (1428)
Q Consensus 1122 ~~wl~~~l~~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e-~~~~~~~-~~~~wp~~g~I~f~nvs~ 1199 (1428)
..++... ...++. ....... +...-+.+..|+++|+++
T Consensus 288 ---------------------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 327 (530)
T PRK15064 288 ---------------------------------------QIDKIKL-EEVKPSSRQNPFIRFEQDKKLHRNALEVENLTK 327 (530)
T ss_pred ---------------------------------------HHhhccc-cccCCccccCceeeCCCCCCCCCceEEEEeeEE
Confidence 0000000 000000 0000000 000001134699999999
Q ss_pred EECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCcc--
Q 000553 1200 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-- 1277 (1428)
Q Consensus 1200 ~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~-- 1277 (1428)
+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +++++|+||++.
T Consensus 328 ~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~ 394 (530)
T PRK15064 328 GFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGYYAQDHAYD 394 (530)
T ss_pred eeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEEEEccccccc
Confidence 9964 3599999999999999999999999999999999999999999999987 357999999984
Q ss_pred ccC-CcHHHhcCcCCC--CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000553 1278 LFE-GSLRDNLDPFHM--NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353 (1428)
Q Consensus 1278 lf~-gTIR~NLdp~~~--~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEa 1353 (1428)
+++ .|+++|+..+.. ..++++.++++.. |+. .........||||||||++||||++++|+|||||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 465 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRL---------LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHc---------CCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 443 599999864321 1223344444444 553 344556678999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEE-EecChhHHhccC
Q 000553 1354 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV-EQGNPQTLLQDE 1415 (1428)
Q Consensus 1354 TS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv-e~g~p~eLl~~~ 1415 (1428)
|++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||||++|++|+++ +.|+++++++.+
T Consensus 466 t~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 466 TNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred CCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 9999999999999999876 4699999999999886 8999999999998 789999987643
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=629.93 Aligned_cols=444 Identities=20% Similarity=0.279 Sum_probs=335.1
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 4 YLSFDGIGKTFPG---V---KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred eEEEeeeEEEECC---E---EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 4789999999853 1 359999999999999999999999999999999999999999998764
Q ss_pred --cEEEEcCCCCCCcc-cHHHHHhcCCC------CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHH
Q 000553 673 --SIAYVPQVPWILSG-TIRDNILFGKN------YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1428)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~------~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQk 739 (1428)
.|+|++|+|.++.. |++||+.++.. .+. ++..++++.+++... ......+||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~ 146 (501)
T PRK11288 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQR 146 (501)
T ss_pred hCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHH
Confidence 48999999988765 99999998631 122 233444555544311 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChH
Q 000553 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 740 qRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~ 818 (1428)
||++||||+..+|+++||||||++||+.+.+.+.+.+ .....+|+|+|++||+++.+.. ||+|++|++|+++..++..
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 225 (501)
T PRK11288 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI-RELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDM 225 (501)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCcc
Confidence 9999999999999999999999999999999988763 3212347899999999998765 9999999999987543200
Q ss_pred HHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHhhhhH
Q 000553 819 DLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW 898 (1428)
Q Consensus 819 el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~ 898 (1428)
+ . . . .+. +..
T Consensus 226 ~-------------~---------------------------~-------~------~~~-------------~~~---- 235 (501)
T PRK11288 226 A-------------Q---------------------------V-------D------RDQ-------------LVQ---- 235 (501)
T ss_pred c-------------c---------------------------C-------C------HHH-------------HHH----
Confidence 0 0 0 0 000 000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 899 FITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTL 978 (1428)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~l 978 (1428)
.+...
T Consensus 236 -------------------------~~~~~-------------------------------------------------- 240 (501)
T PRK11288 236 -------------------------AMVGR-------------------------------------------------- 240 (501)
T ss_pred -------------------------HhcCC--------------------------------------------------
Confidence 00000
Q ss_pred HhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 979 LTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFF 1058 (1428)
Q Consensus 979 l~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~ 1058 (1428)
+
T Consensus 241 -------~------------------------------------------------------------------------ 241 (501)
T PRK11288 241 -------E------------------------------------------------------------------------ 241 (501)
T ss_pred -------C------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1059 YRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLALSYA 1138 (1428)
Q Consensus 1059 y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl~l~~~ 1138 (1428)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeC
Q 000553 1139 APIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEG 1218 (1428)
Q Consensus 1139 ~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~ 1218 (1428)
.++. .+.++ . + +.+..++++|++++ .+++|+||+|++
T Consensus 242 -----------------------~~~~-----~~~~~----~--~---~~~~~l~~~~~~~~------~~l~~isl~i~~ 278 (501)
T PRK11288 242 -----------------------IGDI-----YGYRP----R--P---LGEVRLRLDGLKGP------GLREPISFSVRA 278 (501)
T ss_pred -----------------------cccc-----ccccc----c--C---CCCcEEEEeccccC------CcccceeEEEeC
Confidence 0000 00000 0 0 01125899999742 489999999999
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC-hHhHhcceEEEeCCcc---ccC-CcHHHhcCcCCC-
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLRGRFAVVPQSPF---LFE-GSLRDNLDPFHM- 1292 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~-~~~lR~~i~~VpQdp~---lf~-gTIR~NLdp~~~- 1292 (1428)
||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .+..|++++|+||+|. +|+ .|+.+|+.....
T Consensus 279 Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~ 358 (501)
T PRK11288 279 GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARR 358 (501)
T ss_pred CcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccch
Confidence 9999999999999999999999999999999999999987543 3456789999999973 555 699999864311
Q ss_pred C-ChHHH--HHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHH
Q 000553 1293 N-DDLKI--WSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368 (1428)
Q Consensus 1293 ~-~d~ei--~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~ 1368 (1428)
. ..... ...-++....+.++.+|++ ........+||||||||++|||||+.+|++|||||||++||..+.+.+.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 438 (501)
T PRK11288 359 HHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNV 438 (501)
T ss_pred hhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHH
Confidence 0 00000 0000011233455555773 345556678999999999999999999999999999999999999999999
Q ss_pred HHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1369 ISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1369 i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
|++.. .+.|||+|||+++.+.. ||||++|++|++++.|++++...
T Consensus 439 l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 485 (501)
T PRK11288 439 IYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATE 485 (501)
T ss_pred HHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCCH
Confidence 97764 48899999999999976 79999999999999999987653
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-62 Score=614.44 Aligned_cols=521 Identities=20% Similarity=0.240 Sum_probs=410.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000553 288 KVVNDSIGFAGPLLLNKLIKFLQQGS-GHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVR 366 (1428)
Q Consensus 288 ~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~Iy~K~L~l~ 366 (1428)
.++..++..+.|++++.++|.+.... .....+.+++.++++.++..++.....+...+.+.++...+...+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556777889999999999875422 12223334444555556666666666677778889999999999999999999
Q ss_pred ccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 367 LAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKF-AFVSGLAITILLIPVNKWIANLIAN 444 (1428)
Q Consensus 367 ~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~w~~p~~i~i~~~lL~~~lg~-a~l~g~~v~~~~~~~~~~~~~~~~~ 444 (1428)
...+.+.+.|++++.+++|++.+.... ..+..++..++.+++++++++..++| .+++.++++++...+...+.+++.+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888899999999999999998654 34555665555544444333223333 2233333333344455666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000553 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP--TLFSLFTFGL 522 (1428)
Q Consensus 445 ~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~ 522 (1428)
..++..+..++..+.+.|.++|+++||.+++|+.+.++..+..++..+...+.....+....+..... ..+.++.+|.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888899999999999999999999998887776544433333333333332222221111 1233456677
Q ss_pred HHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCccCCCC
Q 000553 523 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSK 602 (1428)
Q Consensus 523 y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1428)
|.+.++.+|++.+++++.+...+..|+..+++.+..+.++.++.+||.++++.++..+... .+ .+..
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~----~~---------~~~~ 310 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS----EP---------VPEG 310 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC----CC---------CCCC
Confidence 8888889999999999999999999999999999999999999999999997653211000 00 0112
Q ss_pred CceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----------
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---------- 672 (1428)
+..|+++|++|+|+..+ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~I~~~~v~~~y~~~~----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 311 RGELDVNIRQFTYPQTD----HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386 (569)
T ss_pred CCcEEEEEEEEECCCCC----CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHH
Confidence 34689999999997431 2359999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEcCCCCCCcccHHHHHhcCC-CCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHH
Q 000553 673 ---SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARal 748 (1428)
.++||+|+|++|++|++|||.++. +.+++++.++++.+++++++..+|+|++|.+|++|.+||||||||++||||+
T Consensus 387 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 489999999999999999999985 4788899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHhccccC
Q 000553 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSG 827 (1428)
Q Consensus 749 y~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~~~~~~ 827 (1428)
+++|+++|||||||+||+++++.+.+. +.. ..+++|+|++||+++.++.||+|++|++|+++++|+++++.+..+.+
T Consensus 467 l~~~~illlDEpts~LD~~~~~~i~~~-l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y 543 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHN-LRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWY 543 (569)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChH
Confidence 999999999999999999999999887 433 45689999999999999999999999999999999999998765443
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-64 Score=623.24 Aligned_cols=435 Identities=22% Similarity=0.320 Sum_probs=329.0
Q ss_pred EccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--------------cE
Q 000553 609 QDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------------SI 674 (1428)
Q Consensus 609 ~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--------------~i 674 (1428)
+|+++.|+. +.+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 2 ~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 75 (491)
T PRK10982 2 SNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI 75 (491)
T ss_pred CceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 467777742 2359999999999999999999999999999999999999999999865 38
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC------CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHH
Q 000553 675 AYVPQVPWILS-GTIRDNILFGKN------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1428)
Q Consensus 675 ~y~~Q~p~l~~-~ti~~nI~~g~~------~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 743 (1428)
+|++|++.++. .|++||+.++.. .+.+ +.+++++.+++. ........+|||||||||+
T Consensus 76 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 76 SMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIE 144 (491)
T ss_pred EEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHH
Confidence 99999997765 599999987632 1222 222333333332 1234456789999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHh
Q 000553 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 744 lARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
||||+..+|+++||||||++||+.+.+++.+. +......++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 223 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI-IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM 223 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH
Confidence 99999999999999999999999999998876 3321235789999999999876 499999999999987765433100
Q ss_pred ccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHhhhhHHHHH
Q 000553 823 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITL 902 (1428)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~ 902 (1428)
. +.. ..
T Consensus 224 ~------------------------------------------------~~~---~~----------------------- 229 (491)
T PRK10982 224 D------------------------------------------------KII---AM----------------------- 229 (491)
T ss_pred H------------------------------------------------HHH---HH-----------------------
Confidence 0 000 00
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000553 903 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 982 (1428)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 982 (1428)
+.. .
T Consensus 230 ----------------------~~~---~--------------------------------------------------- 233 (491)
T PRK10982 230 ----------------------MVG---R--------------------------------------------------- 233 (491)
T ss_pred ----------------------HhC---C---------------------------------------------------
Confidence 000 0
Q ss_pred cCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 983 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062 (1428)
Q Consensus 983 l~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~ 1062 (1428)
+
T Consensus 234 ---~---------------------------------------------------------------------------- 234 (491)
T PRK10982 234 ---S---------------------------------------------------------------------------- 234 (491)
T ss_pred ---C----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLALSYAAPIV 1142 (1428)
Q Consensus 1063 sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl~l~~~~~~~ 1142 (1428)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEE
Q 000553 1143 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQV 1222 (1428)
Q Consensus 1143 ~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~Gekv 1222 (1428)
+ .+ ..+.+. .+ +.+..|+++|++++| +++|+|+||+|++||++
T Consensus 235 ----------------~---~~-----~~~~~~-----~~----~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~ 277 (491)
T PRK10982 235 ----------------L---TQ-----RFPDKE-----NK----PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEIL 277 (491)
T ss_pred ----------------c---cc-----cccccc-----CC----CCCcEEEEeCccccc----CcccceeeEEEeCCcEE
Confidence 0 00 000000 00 112259999999975 25999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH-hHhcceEEEeCCcc---ccC-CcHHHh-----cCcCCC
Q 000553 1223 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR-DLRGRFAVVPQSPF---LFE-GSLRDN-----LDPFHM 1292 (1428)
Q Consensus 1223 gIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~-~lR~~i~~VpQdp~---lf~-gTIR~N-----Ldp~~~ 1292 (1428)
||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.++|+||++. +|+ .|+++| +.....
T Consensus 278 ~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (491)
T PRK10982 278 GIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKN 357 (491)
T ss_pred EEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcc
Confidence 99999999999999999999999999999999999876653 45778999999963 565 477766 321111
Q ss_pred ----CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHH
Q 000553 1293 ----NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367 (1428)
Q Consensus 1293 ----~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~ 1367 (1428)
.+..+.. ....+.++.+|+. .........||||||||++||||++++|+||||||||++||+.+.+.+.+
T Consensus 358 ~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~ 432 (491)
T PRK10982 358 KVGLLDNSRMK-----SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ 432 (491)
T ss_pred cccccCcHHHH-----HHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH
Confidence 1111111 1123445555663 23456667899999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1368 AISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1368 ~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
.|++.. ++.|||+|||+++.+.. ||||++|++|+++..++++++.
T Consensus 433 ~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 479 (491)
T PRK10982 433 LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTT 479 (491)
T ss_pred HHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 997753 58999999999999976 7999999999999888776554
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=650.96 Aligned_cols=220 Identities=22% Similarity=0.322 Sum_probs=187.7
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcc
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1268 (1428)
...|+++|++++|+....++|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++|.++.+ +....|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997534579999999999999999999999999999999999999999999999999965 45677889
Q ss_pred eEEEeCCccccCC-cHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
|||+||++.+++. |++|||..+. ..+.+++.+. ..+.++.+||+...+.....||||||||++|||||+.+
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999998875 9999996532 1222222211 22344445666555666668999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|+||+|||||++||+.+.+.+++.|++.. +++|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999998853 58999999999999986 899999999999999999999654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-62 Score=558.48 Aligned_cols=530 Identities=20% Similarity=0.268 Sum_probs=446.5
Q ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 267 PSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKL 346 (1428)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1428)
.....+....++..|+..+++..+.+++.+..|+++-++.|.+-.+.+......+.+....+|+++.+++....+...|+
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Ri 90 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRI 90 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888999999999999999999999999999998776777777888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000553 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-----NSFHDAWSLPFQIGVALYLLYTQVKFAF 421 (1428)
Q Consensus 347 ~~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-----~~~~~~w~~p~~i~i~~~lL~~~lg~a~ 421 (1428)
+.++...|...||.-+++.+..........+.+ .|.+.+..+. ..+.++.+.|+.+++ +|+++..+|+.+
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG~~a 165 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLGLIA 165 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999976654433222222333 2666666654 347788889999887 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 422 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 501 (1428)
Q Consensus 422 l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~ 501 (1428)
++|.++++.+..+|-.+++ +..++-.++.-+|....+..++|..+|+.+|+.+...+++.+....-++...+.....
T Consensus 166 ~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNERATR---KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999988888887776665 4566777888899999999999999999999999999999887766666554443333
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 000553 502 AWCVFFWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 579 (1428)
Q Consensus 502 ~~~~~~~~~~~~~--~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 579 (1428)
.....+.-..-.+ +.++..|+|++.++++|++.++++..+......|+......+.++..|+.|++|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3222222222222 34567788999999999999999999999999999999999999999999999999999653322
Q ss_pred hhhhhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHc
Q 000553 580 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1428)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG 659 (1428)
++.. .. +.++..+.++++++.-|.. + +++++|+||++++|+-++|+||||||||||.++|.|
T Consensus 323 ~~~m---~L-----------P~P~g~L~Ve~l~~~PPg~-~---~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 323 AERM---PL-----------PAPQGALSVERLTAAPPGQ-K---KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred cCCC---CC-----------CCCCceeeEeeeeecCCCC-C---CcceecceeEecCCceEEEECCCCccHHHHHHHHHc
Confidence 2111 11 2356788999999965432 2 345999999999999999999999999999999999
Q ss_pred CccCCCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHh-cCCCCChHHHHHHHHHhcchHHHhcccCCCcc
Q 000553 660 EMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725 (1428)
Q Consensus 660 ~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~-~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t 725 (1428)
..+|.+|.|++|| +|||.||+..||.|||+|||. |+.+.|+++.-++.++.+.++-|..+|+|++|
T Consensus 385 ~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT 464 (580)
T COG4618 385 IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT 464 (580)
T ss_pred ccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccC
Confidence 9999999999987 699999999999999999995 88889999999999999999999999999999
Q ss_pred cccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEE
Q 000553 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805 (1428)
Q Consensus 726 ~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~ 805 (1428)
.||+.|.+|||||||||+||||+|.+|.+++||||.|+||.+-+..+.+. +.....+|.|+|+||||++.+..+|+|.+
T Consensus 465 ~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A-i~~~k~rG~~vvviaHRPs~L~~~Dkilv 543 (580)
T COG4618 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA-ILAAKARGGTVVVIAHRPSALASVDKILV 543 (580)
T ss_pred ccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH-HHHHHHcCCEEEEEecCHHHHhhcceeee
Confidence 99999999999999999999999999999999999999999988877766 55546778899999999999999999999
Q ss_pred EeCCeEEEecChHHHHhc
Q 000553 806 MDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 806 l~~G~i~~~g~~~el~~~ 823 (1428)
|++|++...|+.+|..++
T Consensus 544 l~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 544 LQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCChHHhcCCHHHHHHH
Confidence 999999999999998765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-61 Score=608.04 Aligned_cols=527 Identities=23% Similarity=0.285 Sum_probs=415.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMT 356 (1428)
Q Consensus 277 ~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 356 (1428)
++ .++...++.++..++....|.++..+++.+.. .......+...+++++++..++...+.+...+.+.++...+..
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~ 89 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRR 89 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 77888888899999999999999999988762 1222223333444444455666666666677777899999999
Q ss_pred HHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHH
Q 000553 357 IIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWS-LPFQIGVALYLL---YTQVKFAFVSGLAITILLI 432 (1428)
Q Consensus 357 ~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~w~-~p~~i~i~~~lL---~~~lg~a~l~g~~v~~~~~ 432 (1428)
.+|+|.++++...+++...|++++.++.|++.+............ .++.++..+.++ .+.+++..+++ .+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~---~~~~~ 166 (567)
T COG1132 90 DLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLI---LPLLA 166 (567)
T ss_pred HHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHH
Confidence 999999999998888888999999999999999987766422222 333332222222 22333333332 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 000553 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW--AT 510 (1428)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~--~~ 510 (1428)
....++.++.++..++..+..++..+.+.|.++|++.||.++.|+...++..+..++..+...+..........+. ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566788888888999999999999999999999999997766665544333333322222222222111 11
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCC
Q 000553 511 TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 590 (1428)
Q Consensus 511 ~~~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 590 (1428)
.-....++.++.+.+..+.++.+.+.+.+.++..+..|+..+...+..+..+..+.+|+.++++.++....... +
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~----~- 321 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD----P- 321 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC----C-
Confidence 22233445566777778889999999999999999999999999999999999999999999987543111000 0
Q ss_pred cccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEE
Q 000553 591 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 670 (1428)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~ 670 (1428)
.......|+++|++|+|+++ +++|+|+||++++||.++||||+||||||++++|+|+++|++|+|.+
T Consensus 322 --------~~~~~~~I~f~~vsf~y~~~-----~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 322 --------LKDTIGSIEFENVSFSYPGK-----KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred --------CCCCCCeEEEEEEEEEcCCC-----CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 01234569999999999852 23499999999999999999999999999999999999999999999
Q ss_pred cC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 671 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 671 ~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
+| +||||+|+|+||++||+|||.+|++ .++++..++++.+++++.++.+|+|++|.+||+|.+|||
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 76 5999999999999999999999988 588899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecC
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 816 (1428)
|||||++||||++++|+|++||||||+||+++++.|.+.+ .. +.++||+|+|+||++.+..||+|++|++|+|++.|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l-~~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL-KK-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH-HH-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999998874 32 457789999999999999999999999999999999
Q ss_pred hHHHHhccccCcc
Q 000553 817 SADLAVSLYSGFW 829 (1428)
Q Consensus 817 ~~el~~~~~~~~~ 829 (1428)
|+||+++.+.+.+
T Consensus 547 h~eLl~~~g~y~~ 559 (567)
T COG1132 547 HEELLAKGGLYAR 559 (567)
T ss_pred HHHHHHcCCHHHH
Confidence 9999987655543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-61 Score=603.00 Aligned_cols=507 Identities=21% Similarity=0.213 Sum_probs=399.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 278 GYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMT 356 (1428)
Q Consensus 278 ~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 356 (1428)
++.++..+++.++..++..+.|++++.++|.+. +.......+.+++.++++.++..++.....+...+++.++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788889999999999999999999874 3222222333445555666677777777788888999999999999
Q ss_pred HHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHH
Q 000553 357 IIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYL---LYTQVKFAFVSGLAITILLI 432 (1428)
Q Consensus 357 ~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~l---L~~~lg~a~l~g~~v~~~~~ 432 (1428)
.+|+|.++++.....+.++|+++|.++.|++.+.+... .+..+....+.+++++.+ +.+.+++..++++++ ..
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l---~~ 158 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPL---IP 158 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HH
Confidence 99999999999888889999999999999999997654 355555544444333332 233444443333222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 512 (1428)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 512 (1428)
.+..++.++..+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+.-++..+...+..........+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345677777788888899999999999999999999999999998888876654443433333333332222222222
Q ss_pred HHHH--HHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCC
Q 000553 513 TLFS--LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 590 (1428)
Q Consensus 513 ~~~~--~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 590 (1428)
.+.. ++.++.+.+..+.+|.+.+++++.+...+..|+..+...+..+.++..+++|+.++++.++...... ..+
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~- 314 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVT- 314 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCC-
Confidence 2211 1234445555778999999999999999999999999999999999999999999997442211000 000
Q ss_pred cccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEE
Q 000553 591 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 670 (1428)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~ 670 (1428)
......|+++|++|+|+..+ +++|+|+||++++|+.++|+||+|||||||+++|+|+++|++|+|.+
T Consensus 315 ---------~~~~~~i~~~~v~f~y~~~~----~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~ 381 (529)
T TIGR02857 315 ---------AAPAPSLEFSGLSVAYPGRR----APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381 (529)
T ss_pred ---------CCCCCeEEEEEEEEECCCCC----cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 01224699999999997531 23599999999999999999999999999999999999999999999
Q ss_pred cC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 671 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 671 ~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
+| +++||+|+|++|++||+|||.++.+ .++++..++++.++++++++.+|+|.+|.+||+|.+|||
T Consensus 382 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 461 (529)
T TIGR02857 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSG 461 (529)
T ss_pred CCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCH
Confidence 86 4999999999999999999999864 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEE
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVM 806 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l 806 (1428)
|||||++||||++++|++++||||||+||+++++.+++. +.. ..+++|+|+||||++.+..||+|++|
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~-l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEA-LRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999999999887 444 45789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-62 Score=614.84 Aligned_cols=479 Identities=23% Similarity=0.291 Sum_probs=331.5
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEc--CcEEEEcCCCC
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--GSIAYVPQVPW 682 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~--~~i~y~~Q~p~ 682 (1428)
.++++|+++.|+.+ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ ..||||+|+|+
T Consensus 6 ~l~i~~l~~~y~~~-----~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 80 (556)
T PRK11819 6 IYTMNRVSKVVPPK-----KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ 80 (556)
T ss_pred EEEEeeEEEEeCCC-----CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC
Confidence 58899999999521 235999999999999999999999999999999999999999999986 46999999999
Q ss_pred CCcc-cHHHHHhcCCC-C--------------C-h-H-------HHHHHHHHh---c---chHH----HhcccCCCcccc
Q 000553 683 ILSG-TIRDNILFGKN-Y--------------D-P-Q-------SYSETLKAC---T---LDVD----ISLMVGGDMAYI 727 (1428)
Q Consensus 683 l~~~-ti~~nI~~g~~-~--------------~-~-~-------~~~~v~~~c---~---l~~d----i~~l~~gd~t~i 727 (1428)
+++. |++||+.++.. + . + + .+.++.+.+ + .+.. ++.+ |- ...
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl-~~~ 157 (556)
T PRK11819 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RC-PPW 157 (556)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CC-Ccc
Confidence 8865 99999987521 0 0 0 0 011111100 0 0111 1111 00 012
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEE
Q 000553 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVM 806 (1428)
Q Consensus 728 g~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l 806 (1428)
.....+|||||||||+||||++.+|+++|||||||+||+...+++.+. +.. + +.|+|+|||+++++.. ||+|++|
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~-L~~-~--~~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF-LHD-Y--PGTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHH-HHh-C--CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 445678999999999999999999999999999999999999988875 433 2 3599999999999875 9999999
Q ss_pred eCCeEE-EecChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcch
Q 000553 807 DKGQVK-WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVE 885 (1428)
Q Consensus 807 ~~G~i~-~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 885 (1428)
++|+++ +.|+++++..... ... . ......+..+..
T Consensus 234 ~~g~i~~~~g~~~~~~~~~~----------~~~----------------~---------------~~~~~~~~~~~~--- 269 (556)
T PRK11819 234 DRGRGIPWEGNYSSWLEQKA----------KRL----------------A---------------QEEKQEAARQKA--- 269 (556)
T ss_pred eCCEEEEecCCHHHHHHHHH----------HHH----------------H---------------HHHHHHHHHHHH---
Confidence 999986 7788877642110 000 0 000000000000
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1428)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 965 (1428)
++ . +..|....
T Consensus 270 -------~~-----------------~---------~~~~~~~~------------------------------------ 280 (556)
T PRK11819 270 -------LK-----------------R---------ELEWVRQS------------------------------------ 280 (556)
T ss_pred -------HH-----------------H---------HHHHHHHh------------------------------------
Confidence 00 0 00000000
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000553 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1428)
Q Consensus 966 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1045 (1428)
+ .+
T Consensus 281 --------------------~--------~~------------------------------------------------- 283 (556)
T PRK11819 281 --------------------P--------KA------------------------------------------------- 283 (556)
T ss_pred --------------------h--------hh-------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1125 (1428)
Q Consensus 1046 ~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl 1125 (1428)
+ .....+.
T Consensus 284 -----------~-~~~~~~~------------------------------------------------------------ 291 (556)
T PRK11819 284 -----------R-QAKSKAR------------------------------------------------------------ 291 (556)
T ss_pred -----------h-HHHHHHH------------------------------------------------------------
Confidence 0 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCccccccCCCCCCCCCCCccEEEEEEEEEECCC
Q 000553 1126 SLRLQVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM-DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS 1204 (1428)
Q Consensus 1126 ~~~l~~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~-~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~ 1204 (1428)
....+|..+.. ..+++.. ....++...+.+..|+++|++++|++
T Consensus 292 ---------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~- 336 (556)
T PRK11819 292 ---------------------------------LARYEELLSEEYQKRNETN-EIFIPPGPRLGDKVIEAENLSKSFGD- 336 (556)
T ss_pred ---------------------------------HHHHHHhhcccccccCCCc-eeecCCCCCCCCeEEEEEeEEEEECC-
Confidence 00001111000 0000000 00001111122346999999999964
Q ss_pred CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCc-cccCC-c
Q 000553 1205 LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEG-S 1282 (1428)
Q Consensus 1205 ~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp-~lf~g-T 1282 (1428)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .+++|+||++ .+++. |
T Consensus 337 -~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 337 -RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKT 404 (556)
T ss_pred -eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEEEeCchhhcCCCCC
Confidence 3699999999999999999999999999999999999999999999954 2 1699999997 56654 9
Q ss_pred HHHhcCcCCCC----C-hHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccC
Q 000553 1283 LRDNLDPFHMN----D-DLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356 (1428)
Q Consensus 1283 IR~NLdp~~~~----~-d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~ 1356 (1428)
+++|+...... . +.+.. +.++.+|+.. ........||||||||++||||++.+|++|||||||++
T Consensus 405 v~e~l~~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 475 (556)
T PRK11819 405 VWEEISGGLDIIKVGNREIPSR---------AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTND 475 (556)
T ss_pred HHHHHHhhcccccccccHHHHH---------HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 99998643211 1 11122 2344456643 34555668999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeC-CeEEE-ecChhHHhccC
Q 000553 1357 VDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-GHLVE-QGNPQTLLQDE 1415 (1428)
Q Consensus 1357 lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~-G~ive-~g~p~eLl~~~ 1415 (1428)
||+.+.+.+.+.|++. + .|||+|||+++.+.. ||||++|++ |++.+ .|+++++++++
T Consensus 476 LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 476 LDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred CCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 9999999999999875 4 489999999999876 899999986 88874 68898887654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=617.98 Aligned_cols=443 Identities=19% Similarity=0.234 Sum_probs=332.0
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLSD---T---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEEEcCC---e---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 3789999999853 1 259999999999999999999999999999999999999999998754
Q ss_pred -cEEEEcCCCCC---------CcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 -SIAYVPQVPWI---------LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 -~i~y~~Q~p~l---------~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.++|++|+|.+ +..|++||+.++.. ++++.+++++..+++... .....+|||||||||
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv 144 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKT 144 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHH
Confidence 27999998743 14599999876532 345566777777765332 334568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHH
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
+||||+..+|+++||||||++||+...+++.+.+ .....+++|+|++||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELL-ASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999888863 3212347899999999998765 9999999999999888766542
Q ss_pred hccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHhhhhHHHH
Q 000553 822 VSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFIT 901 (1428)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~ 901 (1428)
.... . .+..+.
T Consensus 224 ~~~~----------------------------~-----------------------~~~~~~------------------ 234 (490)
T PRK10938 224 QQAL----------------------------V-----------------------AQLAHS------------------ 234 (490)
T ss_pred cchh----------------------------h-----------------------hhhhhh------------------
Confidence 1000 0 000000
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000553 902 LVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTK 981 (1428)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~ 981 (1428)
..+ ...
T Consensus 235 ---------------------~~~-~~~---------------------------------------------------- 240 (490)
T PRK10938 235 ---------------------EQL-EGV---------------------------------------------------- 240 (490)
T ss_pred ---------------------hcc-Ccc----------------------------------------------------
Confidence 000 000
Q ss_pred ccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 982 IVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061 (1428)
Q Consensus 982 vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~ 1061 (1428)
+
T Consensus 241 ----~--------------------------------------------------------------------------- 241 (490)
T PRK10938 241 ----Q--------------------------------------------------------------------------- 241 (490)
T ss_pred ----c---------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1062 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLALSYAAPI 1141 (1428)
Q Consensus 1062 ~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl~l~~~~~~ 1141 (1428)
.|
T Consensus 242 -------------~~----------------------------------------------------------------- 243 (490)
T PRK10938 242 -------------LP----------------------------------------------------------------- 243 (490)
T ss_pred -------------cC-----------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcE
Q 000553 1142 VSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQ 1221 (1428)
Q Consensus 1142 ~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~Gek 1221 (1428)
. ..+... ....+ +.+..|+++|++++|++ ..+|+|+||+|++||+
T Consensus 244 ----------------------------~-~~~~~~-~~~~~---~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~ 288 (490)
T PRK10938 244 ----------------------------E-PDEPSA-RHALP---ANEPRIVLNNGVVSYND--RPILHNLSWQVNPGEH 288 (490)
T ss_pred ----------------------------c-cccccc-ccccC---CCCceEEEeceEEEECC--eeEEeeceEEEcCCCE
Confidence 0 000000 00000 01235999999999964 3599999999999999
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCeeCCC-CChHhHhcceEEEeCCccccC---CcHHHhcCcC--C---
Q 000553 1222 VGIVGRTGAGKSSILNALFRLTPI-CGGQILVDGLNIIN-TPVRDLRGRFAVVPQSPFLFE---GSLRDNLDPF--H--- 1291 (1428)
Q Consensus 1222 vgIvGrTGSGKSTL~~~L~rl~~~-~~G~I~IDG~di~~-i~~~~lR~~i~~VpQdp~lf~---gTIR~NLdp~--~--- 1291 (1428)
+||+|+||||||||+++|.|+.++ ++|+|.+||.++.. .+....|++++++||++.++. .|+++++.+. .
T Consensus 289 ~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (490)
T PRK10938 289 WQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIG 368 (490)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccc
Confidence 999999999999999999998876 69999999987632 233456789999999986542 3677776421 1
Q ss_pred CC--ChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHH
Q 000553 1292 MN--DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368 (1428)
Q Consensus 1292 ~~--~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~ 1368 (1428)
.. .+.+. +....+.++.+|++. ........||||||||++|||||+++|+||||||||++||+++.+.+.+.
T Consensus 369 ~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 443 (490)
T PRK10938 369 IYQAVSDRQ-----QKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRF 443 (490)
T ss_pred cccCCCHHH-----HHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 01 01111 011234444456665 45556678999999999999999999999999999999999999999999
Q ss_pred HHHhcC-C-cEEEEeccChhhhhh--cCEEEEEeCCeEEEec
Q 000553 1369 ISSECK-G-MTVITIAHRISTVLN--MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1369 i~~~~~-~-~TvI~IaHrl~ti~~--~DrI~Vl~~G~ive~g 1406 (1428)
|++..+ + .|||+|||+++.+.. ||+|++|++|++++.-
T Consensus 444 L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 444 VDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 988643 3 479999999999975 6999999999998764
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=607.02 Aligned_cols=486 Identities=17% Similarity=0.171 Sum_probs=366.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000553 907 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986 (1428)
Q Consensus 907 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 986 (1428)
+.++...+....++.++.+.+.... ... ..+..++++.++..++.++..++....+.+...+++.++++++++.|
T Consensus 26 ~~~~~~~~~~~~~~~i~~~i~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~ 100 (555)
T TIGR01194 26 LGLAGGLAIIALLASINNAIHEENF--LGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAP 100 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444444555556666666543110 000 11223444455566677777888888999999999999999999999
Q ss_pred ccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1066 (1428)
Q Consensus 987 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l 1066 (1428)
+.||++.++|++++|+++|++.++..+. .+..++..++.+++.++++++.+|.++++++.++++...+..+..+..+..
T Consensus 101 ~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~ 179 (555)
T TIGR01194 101 IEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKF 179 (555)
T ss_pred HHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998775 356666666777777777777777766554433333222222222222222
Q ss_pred HHHHHhhcchhHHHHHHhhcchHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH
Q 000553 1067 RRLDSVSRSPIYASFTETLNGSSTIRAFKSED--YFMAKFKEHVVLYQRTSYSELTAS------------------LWLS 1126 (1428)
Q Consensus 1067 ~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~--~~~~~~~~~~~~~~~~~~~~~~~~------------------~wl~ 1126 (1428)
.+......+.+.+++.|.+.|+++||+|+.++ ...+++.+..++..+......... .|.+
T Consensus 180 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (555)
T TIGR01194 180 FHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAA 259 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445678899999999999999999953 445566665555544432211100 0110
Q ss_pred H---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-cc--cCC-C-C--CCCCCCCccEE
Q 000553 1127 L---RLQVG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE-LC--GYQ-S-L--SPDWPFQGLIE 1193 (1428)
Q Consensus 1127 ~---~l~~g---l~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~-~~--~~~-~-~--~~~wp~~g~I~ 1193 (1428)
. .+.+| ..+.++..+...+..+...+.+++....|.+|+.++.+.+.++ .. ... . . .+.....+.|+
T Consensus 260 ~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 339 (555)
T TIGR01194 260 AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339 (555)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEE
Confidence 0 00122 2233455566777888889999999999999999997642221 10 000 0 0 01112346899
Q ss_pred EEEEEEEECCC---CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1194 FQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1194 f~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 419 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS 419 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc
Confidence 99999999753 246999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000553 1271 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348 (1428)
Q Consensus 1271 ~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~IL 1348 (1428)
+|||||++|++|+|+|+.+ ..++++++++++.++++++++.+ |+||. .+||||||||++||||++++|+||
T Consensus 420 ~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~il 492 (555)
T TIGR01194 420 AIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPIL 492 (555)
T ss_pred EEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999743 46788999999999999999888 99984 589999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHH-h-cCCcEEEEeccChhhhhhcCEEEEEeCCeEEEe
Q 000553 1349 CLDECTANVDAQTASILQNAISS-E-CKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1405 (1428)
Q Consensus 1349 lLDEaTS~lD~~te~~Iq~~i~~-~-~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~ 1405 (1428)
|||||||+||++|++.+++.+.+ . .+++|+|+||||++++..||+|+||++|+++|.
T Consensus 493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999887643 3 368999999999999999999999999999985
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=561.22 Aligned_cols=523 Identities=22% Similarity=0.272 Sum_probs=415.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000553 285 GLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLY 364 (1428)
Q Consensus 285 ~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~Iy~K~L~ 364 (1428)
.++..+..+....|-.++-..++.+-..+.....+.++++++++.++++++.....+..++.+.++|..|...+++|..+
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~ 85 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAK 85 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666667667666666554433344455667778888899999999999999999999999999999999999
Q ss_pred CCccccCCCChhHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 365 VRLAERSEFSDGEIQTFMSVDTDRTVNLAN----SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAN 440 (1428)
Q Consensus 365 l~~~~~~~~~~g~i~nlms~D~~~i~~~~~----~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~ 440 (1428)
++....+..++|++.+++..-+|.+...+. .....-..|+-+.++++++.+.-|...++.+..+.+++ ..+++
T Consensus 86 ~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---ilvg~ 162 (559)
T COG4988 86 LGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---ILVGL 162 (559)
T ss_pred CChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 998888888899999999999998877432 33344457778888888888776666655554444443 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 441 LIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWL----MKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 516 (1428)
Q Consensus 441 ~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i----~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1428)
..++..+++++.-..-.+..-+-|+|+.++|.|+-.+.-.++| ++.|+.-|+.++-.....+..-++... .+...
T Consensus 163 ~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l-siAlv 241 (559)
T COG4988 163 AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL-SIALV 241 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5556677777777777888889999999999999876655555 445665566554333222223333222 22222
Q ss_pred HHHHHHHHHhC-CCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCC
Q 000553 517 LFTFGLFALMG-HQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNG 595 (1428)
Q Consensus 517 ~~~f~~y~~~~-~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~ 595 (1428)
.+.+ .+.+.+ ++++-...|.+|.+---+-.|+..+...+..-.++.++.+++..|++.|............
T Consensus 242 Av~~-g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~------- 313 (559)
T COG4988 242 AVYI-GFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEV------- 313 (559)
T ss_pred HHHH-HHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccc-------
Confidence 2333 334455 6899999999999999999999999999999999999999999999877643311100000
Q ss_pred CccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC---
Q 000553 596 LSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672 (1428)
Q Consensus 596 ~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--- 672 (1428)
.+.+...+..+|.+|.|+..+ ++++|+||++++|++++|||+||||||||+++|+|+.+|++|+|.++|
T Consensus 314 ---~~~~~~ei~~~~l~~~y~~g~-----~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l 385 (559)
T COG4988 314 ---ANEPPIEISLENLSFRYPDGK-----PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL 385 (559)
T ss_pred ---ccCCCceeeecceEEecCCCC-----cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence 012334555669999997542 459999999999999999999999999999999999999999999986
Q ss_pred ----------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 ----------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
+++||+|+|.||++||||||+++++ -+++...++++..+|.+.++. |+|.+|.+||+|.+|||||+||
T Consensus 386 ~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QR 464 (559)
T COG4988 386 RDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQR 464 (559)
T ss_pred cccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHH
Confidence 5999999999999999999999987 568899999999999999998 9999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
|+||||+++++++||||||||+||+++++.|.+. +.. +.++||+|+||||++.+..+|+|++|++|+++++|+|+++.
T Consensus 465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~-l~~-l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQA-LQE-LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH-HHH-HHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHh
Confidence 9999999999999999999999999999988887 443 67789999999999999999999999999999999999998
Q ss_pred hccccCccc
Q 000553 822 VSLYSGFWS 830 (1428)
Q Consensus 822 ~~~~~~~~~ 830 (1428)
++.+.+.++
T Consensus 543 ~~~~~y~~l 551 (559)
T COG4988 543 EKQGLYANL 551 (559)
T ss_pred hcCcHHHHH
Confidence 777665543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-60 Score=598.54 Aligned_cols=532 Identities=18% Similarity=0.218 Sum_probs=411.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352 (1428)
Q Consensus 273 l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 352 (1428)
.++.+++.++..+++.++..++..+.|++++.++|.+...... ..+++.+++..++..+......+...++..+++.
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888899999999999999999999977542211 1111122222333334333445556778888898
Q ss_pred HHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHH
Q 000553 353 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY---LLYTQVKFAFVSGLAIT 428 (1428)
Q Consensus 353 ~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~---lL~~~lg~a~l~g~~v~ 428 (1428)
.+...+|+|.++++...+.+.++|++++.++.|++.+..... .+..+...++.++++++ .+.+.+++.++ +++
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l---~~~ 166 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLM---VLG 166 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 999999999999999988888999999999999999986543 33333444444433322 22233333333 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1428)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1428)
++...+..++.+++++..++..+..++..+.+.|.++|+++||.+|.|+.+.+++++..++-.+...+..........+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456677777788888888889999999999999999999999998887776654433333222222222222222
Q ss_pred HHHH--HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhc
Q 000553 509 ATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1428)
Q Consensus 509 ~~~~--~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 586 (1428)
.... ..+.++.+|.|.+.++.++.+.+++.+.++..+..|+..+...+..+.++..+++|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-- 324 (585)
T TIGR01192 247 RMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-- 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc--
Confidence 1111 123445678888888899999999999999999999999999999999999999999999976432111000
Q ss_pred CCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCe
Q 000553 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1428)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G 666 (1428)
.+. .+.....++++|++|+|+.+ . ++|+|+||++++|+.++|+||||||||||+++|+|+++|++|
T Consensus 325 -~~~--------~~~~~~~i~~~~v~~~y~~~--~---~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 325 -APE--------LPNVKGAVEFRHITFEFANS--S---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred -CCC--------CCCCCCeEEEEEEEEECCCC--C---ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 000 01123469999999999742 1 349999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
+|.++| .++||+|+|++|++|++|||.++.+ .++++..++++.+++++.+..+|+|.+|.+|++|.
T Consensus 391 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~ 470 (585)
T TIGR01192 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470 (585)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCC
Confidence 999876 5899999999999999999999864 56778888999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEE
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 812 (1428)
+||||||||++||||++++|+++|||||||+||+++++.+.+. +.. ..+++|+|+|||+++.++.||+|++|++|+++
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~-l~~-~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA-IDA-LRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH-HHH-HhCCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998876 433 45689999999999999999999999999999
Q ss_pred EecChHHHHhccccCc
Q 000553 813 WIGSSADLAVSLYSGF 828 (1428)
Q Consensus 813 ~~g~~~el~~~~~~~~ 828 (1428)
++|+++++.++.+.+.
T Consensus 549 ~~g~~~~l~~~~~~y~ 564 (585)
T TIGR01192 549 EKGSFQELIQKDGRFY 564 (585)
T ss_pred EECCHHHHHHCCChHH
Confidence 9999999987655443
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-62 Score=611.49 Aligned_cols=480 Identities=22% Similarity=0.285 Sum_probs=333.7
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--cEEEEcCCCC
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPW 682 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--~i~y~~Q~p~ 682 (1428)
.++++|++++|+.+ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .|||++|+|+
T Consensus 4 ~i~~~nls~~~~~~-----~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 78 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-----KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78 (552)
T ss_pred EEEEeeEEEecCCC-----CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC
Confidence 47899999998521 2359999999999999999999999999999999999999999999874 6999999999
Q ss_pred CCc-ccHHHHHhcCCC-------------------CC--------hHHHHHHHHHhcch---HH----HhcccCCCcccc
Q 000553 683 ILS-GTIRDNILFGKN-------------------YD--------PQSYSETLKACTLD---VD----ISLMVGGDMAYI 727 (1428)
Q Consensus 683 l~~-~ti~~nI~~g~~-------------------~~--------~~~~~~v~~~c~l~---~d----i~~l~~gd~t~i 727 (1428)
+++ .|++|||.++.. .+ ..++.++++.++.. .. ++.+ |- ...
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l-~~~ 155 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RC-PPW 155 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CC-Ccc
Confidence 875 599999987521 01 01233444444432 11 1111 11 112
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEE
Q 000553 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVM 806 (1428)
Q Consensus 728 g~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l 806 (1428)
.....+|||||||||+||||++.+|+++||||||++||+.+.+++.+. +.. . ++|+|+|||+++++.. ||+|++|
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-L~~-~--~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-LQE-Y--PGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH-HHh-C--CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 456679999999999999999999999999999999999999988876 332 2 3699999999999875 8999999
Q ss_pred eCCeEE-EecChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcch
Q 000553 807 DKGQVK-WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVE 885 (1428)
Q Consensus 807 ~~G~i~-~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 885 (1428)
++|+++ ..|+++++..... ... + ....+.+..
T Consensus 232 ~~g~i~~~~g~~~~~~~~~~----------~~~----------------~---------------~~~~~~~~~------ 264 (552)
T TIGR03719 232 DRGRGIPWEGNYSSWLEQKE----------KRL----------------E---------------QEEKEESAR------ 264 (552)
T ss_pred ECCEEEEecCCHHHHHHHHH----------HHH----------------H---------------HHHHHHHHH------
Confidence 999975 6788877643110 000 0 000000000
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1428)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 965 (1428)
...+.. ...|....
T Consensus 265 ----~~~~~~--------------------------~~~~~~~~------------------------------------ 278 (552)
T TIGR03719 265 ----QKALKR--------------------------ELEWVRSS------------------------------------ 278 (552)
T ss_pred ----HHHHHH--------------------------HHHHHHhh------------------------------------
Confidence 000000 00000000
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000553 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1428)
Q Consensus 966 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1045 (1428)
+ .+
T Consensus 279 --------------------~--------~~------------------------------------------------- 281 (552)
T TIGR03719 279 --------------------P--------KA------------------------------------------------- 281 (552)
T ss_pred --------------------h--------hh-------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1125 (1428)
Q Consensus 1046 ~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl 1125 (1428)
. ..+.
T Consensus 282 -----------~-~~~~--------------------------------------------------------------- 286 (552)
T TIGR03719 282 -----------R-QAKS--------------------------------------------------------------- 286 (552)
T ss_pred -----------H-HHHH---------------------------------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCccccccCCCCCCCCCCCccEEEEEEEEEECCC
Q 000553 1126 SLRLQVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS 1204 (1428)
Q Consensus 1126 ~~~l~~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~-~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~ 1204 (1428)
+......++..+. ...+++... ...+...-+.+..++++|++++|+.
T Consensus 287 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~- 334 (552)
T TIGR03719 287 ------------------------------KARLARYEELLSQEFQKRNETAE-IYIPPGPRLGDKVIEAENLSKGFGD- 334 (552)
T ss_pred ------------------------------HHHHHHHHhhhhhcccccCCCce-eecCCCCCCCCeEEEEeeEEEEECC-
Confidence 0000000111100 000000000 0000000012336999999999964
Q ss_pred CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCcc-ccC-Cc
Q 000553 1205 LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LFE-GS 1282 (1428)
Q Consensus 1205 ~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~-lf~-gT 1282 (1428)
.++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ ++ +++|+||++. +++ -|
T Consensus 335 -~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~t 402 (552)
T TIGR03719 335 -KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKT 402 (552)
T ss_pred -eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEEEEeCCccccCCCCc
Confidence 3699999999999999999999999999999999999999999999954 21 6999999973 665 49
Q ss_pred HHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCC
Q 000553 1283 LRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358 (1428)
Q Consensus 1283 IR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD 1358 (1428)
+++|+..... ....+. ...+.++.+|++. ........||||||||++|||||+.+|++|||||||++||
T Consensus 403 v~e~l~~~~~~~~~~~~~~-------~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 403 VWEEISGGLDIIQLGKREV-------PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred HHHHHHhhccccccCcchH-------HHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 9999965321 111110 0123444456653 3455567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeC-CeEEE-ecChhHHhcc
Q 000553 1359 AQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-GHLVE-QGNPQTLLQD 1414 (1428)
Q Consensus 1359 ~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~-G~ive-~g~p~eLl~~ 1414 (1428)
+.+.+.+.+.|++. . .|||+|||+++.+.. ||||++|++ |++++ .|+++++.+.
T Consensus 476 ~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 476 VETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred HHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 99999999999876 3 489999999999986 899999997 68874 4888777643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-62 Score=541.82 Aligned_cols=460 Identities=25% Similarity=0.354 Sum_probs=348.4
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC-----CCeEEEEcC------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~-----~~G~i~~~~------ 672 (1428)
..+.++|.+.++.... ....++++|||++++||.+++||.||||||-..++++|.++. -+|+|..+|
T Consensus 5 ~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 5 PLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred cceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 3567888887776543 335679999999999999999999999999999999999865 467888765
Q ss_pred -----------cEEEEcCCCCC-Ccc--cHHHHH----hcCCCCC----hHHHHHHHHHhcchHHHhcccCCCcccccCC
Q 000553 673 -----------SIAYVPQVPWI-LSG--TIRDNI----LFGKNYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1428)
Q Consensus 673 -----------~i~y~~Q~p~l-~~~--ti~~nI----~~g~~~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~ 730 (1428)
+|++++|+|-- .|. ||-.-| ...+..+ +++.-+.++..++.+- ...+...
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~y 154 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAY 154 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhC
Confidence 69999999952 332 665554 3333333 2333444445554321 1234556
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCC
Q 000553 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKG 809 (1428)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G 809 (1428)
...|||||||||-||.||..+||+||-||||.|||..+..+|++-+..-....|..+++||||+..+.. ||+|+||.+|
T Consensus 155 PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 679999999999999999999999999999999999999999986322113347799999999999986 9999999999
Q ss_pred eEEEecChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHH
Q 000553 810 QVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVY 889 (1428)
Q Consensus 810 ~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 889 (1428)
+++|+|+.+++...... .
T Consensus 235 ~ivE~~~t~~lF~~PqH-------------------------------------------------------------p- 252 (534)
T COG4172 235 EIVETGTTETLFAAPQH-------------------------------------------------------------P- 252 (534)
T ss_pred EEeecCcHHHHhhCCCC-------------------------------------------------------------h-
Confidence 99999876665321000 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 890 KNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 969 (1428)
Q Consensus 890 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 969 (1428)
|.
T Consensus 253 --YT---------------------------------------------------------------------------- 254 (534)
T COG4172 253 --YT---------------------------------------------------------------------------- 254 (534)
T ss_pred --HH----------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000553 970 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1049 (1428)
Q Consensus 970 ~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~ 1049 (1428)
T Consensus 255 -------------------------------------------------------------------------------- 254 (534)
T COG4172 255 -------------------------------------------------------------------------------- 254 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1050 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRL 1129 (1428)
Q Consensus 1050 ~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l 1129 (1428)
|+
T Consensus 255 --------------r~---------------------------------------------------------------- 256 (534)
T COG4172 255 --------------RK---------------------------------------------------------------- 256 (534)
T ss_pred --------------HH----------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCC-----
Q 000553 1130 QVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS----- 1204 (1428)
Q Consensus 1130 ~~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~----- 1204 (1428)
+++ .|+.. ..+|..-...-.++.+||...|+-.
T Consensus 257 --------------------------------------Ll~--aeP~g--~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~ 294 (534)
T COG4172 257 --------------------------------------LLA--AEPSG--DPPPLPEDAPVLLEVEDLRVWFPIKGGFLR 294 (534)
T ss_pred --------------------------------------HHh--cCCCC--CCCCCCCCCCceEEecceEEEEecCCcccc
Confidence 000 01111 1111111123367888888888532
Q ss_pred ----CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh---HhcceEEEeCCcc
Q 000553 1205 ----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LRGRFAVVPQSPF 1277 (1428)
Q Consensus 1205 ----~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR~~i~~VpQdp~ 1277 (1428)
.-.+.++|||+.++||.+||||+||||||||-.+|+|+++++ |+|.++|.||...+.++ +|+++-+|.|||+
T Consensus 295 r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPy 373 (534)
T COG4172 295 RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY 373 (534)
T ss_pred ccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCC
Confidence 124789999999999999999999999999999999999976 99999999999888765 5799999999997
Q ss_pred --ccC-CcHHHhcC----cCC-CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1278 --LFE-GSLRDNLD----PFH-MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1278 --lf~-gTIR~NLd----p~~-~~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
|=+ .||-+-+. -.. ..+ |+.+.+||+.+||+.. .....+..||||||||++||||+.-+|
T Consensus 374 gSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~--------~r~RYPhEFSGGQRQRIAIARAliLkP 445 (534)
T COG4172 374 GSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPA--------TRNRYPHEFSGGQRQRIAIARALILKP 445 (534)
T ss_pred CCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChh--------HhhcCCcccCcchhhHHHHHHHHhcCC
Confidence 222 25544432 111 112 3445666666654332 234556789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHHH
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1422 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l 1422 (1428)
++++||||||+||.--...|.+.+++.- .+-+-++|+|+|..++. ||+|+||.+|+|||+|+-+++++++...|.+-
T Consensus 446 ~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 446 ELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred cEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 9999999999999999999999998764 47799999999999987 89999999999999999999999998777653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=652.76 Aligned_cols=522 Identities=19% Similarity=0.206 Sum_probs=372.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 887 TVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFG 966 (1428)
Q Consensus 887 ~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~ 966 (1428)
+..+..++..++..+... +..++..++....++.++..++.....+.......|..++++..++..++.....+.....
T Consensus 290 ~l~~~l~~~~~~~~~~~~-~~~i~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 368 (1495)
T PLN03232 290 WLLRALNNSLGGRFWLGG-IFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRV 368 (1495)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555565555444333 3345556666666777766555332111111111111111111122222211112223466
Q ss_pred HHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000553 967 SLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLV 1046 (1428)
Q Consensus 967 ~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1046 (1428)
+.+....+...+++++++.|..++++..+|+++||+++|++.+++.. ..+..+....+.++..++++.....+..++.+
T Consensus 369 ~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~ 447 (1495)
T PLN03232 369 GFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGS 447 (1495)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77777888889999999999999999999999999999999999875 33444443333333333332221111112122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000553 1047 PFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL--- 1123 (1428)
Q Consensus 1047 p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--- 1123 (1428)
++++++..+..++.+..+..++.....+....+.+.|.++|+++||+|+||+.+.+++.+..+...+..........
T Consensus 448 ~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~ 527 (1495)
T PLN03232 448 LILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNS 527 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222223333333334444445555677899999999999999999999999988766654443322211111
Q ss_pred -------------HHHHHH------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCC
Q 000553 1124 -------------WLSLRL------QVGL---ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS 1181 (1428)
Q Consensus 1124 -------------wl~~~l------~~gl---~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~ 1181 (1428)
+++..+ .+|. ++.+...+...+..+...+..+.....|.+|+.++++.+++.... .
T Consensus 528 ~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~--~ 605 (1495)
T PLN03232 528 FILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ--N 605 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--c
Confidence 111110 0222 223344455566777778889999999999999999876542111 1
Q ss_pred CCCCCCCCccEEEEEEEEEECCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC
Q 000553 1182 LSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1260 (1428)
Q Consensus 1182 ~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i 1260 (1428)
+ +..+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 606 ~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--------- 675 (1495)
T PLN03232 606 P-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--------- 675 (1495)
T ss_pred C-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---------
Confidence 1 111234679999999999753 46799999999999999999999999999999999999999999773
Q ss_pred ChHhHhcceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHH
Q 000553 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1261 ~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LA 1338 (1428)
.+|++|+||||+|++|+|||||||.++.++++++++++++.|++.+.++.+ |+||.+||+|.+||||||||+|||
T Consensus 676 ---~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred ---EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 368899999999999999999999998888999999999999999999988 999999999999999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHH-HHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCc
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASIL-QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECS 1417 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~I-q~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s 1417 (1428)
||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++++..||+|++|++|+++|.|+|+||+++ ++
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~ 831 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GS 831 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-ch
Confidence 999999999999999999999999876 5567766789999999999999999999999999999999999999975 56
Q ss_pred HHHHHHHhh
Q 000553 1418 VFSSFVRAS 1426 (1428)
Q Consensus 1418 ~f~~l~~~~ 1426 (1428)
.|+++++..
T Consensus 832 ~~~~l~~~~ 840 (1495)
T PLN03232 832 LFKKLMENA 840 (1495)
T ss_pred hHHHHHHhc
Confidence 899988654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-60 Score=647.81 Aligned_cols=445 Identities=20% Similarity=0.236 Sum_probs=344.8
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000553 964 AFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLL 1043 (1428)
Q Consensus 964 ~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 1043 (1428)
...+.+....+...+++++++.|..+++..++|+++|++++|++.++.... .+..++...+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788899999999999999999999999999999999998764 3444444444444333333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000553 1044 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS- 1122 (1428)
Q Consensus 1044 ~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~- 1122 (1428)
+.++++++...++.++.+..+..++.....+....+.+.|.++|+++||+|+||+.|.+++.+..+...+.........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222333333333333344444444556667789999999999999999999999998776654433322111111
Q ss_pred ----H-----------HHHHHH------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccc
Q 000553 1123 ----L-----------WLSLRL------QVGL---ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1178 (1428)
Q Consensus 1123 ----~-----------wl~~~l------~~gl---~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~ 1178 (1428)
. +++..+ .+|. ++++...+...+..+...+..+..+.+|.+|+.++++.+++....
T Consensus 525 ~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~ 604 (1622)
T PLN03130 525 FNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP 604 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence 1 111110 1222 222333444556677778888999999999999999765432111
Q ss_pred CCCCCCCCCCCccEEEEEEEEEECCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC-ceEEECCee
Q 000553 1179 YQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-GQILVDGLN 1256 (1428)
Q Consensus 1179 ~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~-G~I~IDG~d 1256 (1428)
. ++ .-+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|.+ |+|.+
T Consensus 605 -~-~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l---- 677 (1622)
T PLN03130 605 -N-PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI---- 677 (1622)
T ss_pred -C-Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE----
Confidence 1 11 11234579999999999753 3579999999999999999999999999999999999999999 99974
Q ss_pred CCCCChHhHhcceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHH
Q 000553 1257 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1257 i~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQr 1334 (1428)
|++|+||||+|++|+|||||||.++.++++++++++++.|++.+.++.+ |++|.+||+|.+||||||||
T Consensus 678 ---------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQR 748 (1622)
T PLN03130 678 ---------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQR 748 (1622)
T ss_pred ---------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHH
Confidence 7799999999999999999999999888999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHH-HHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhc
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASIL-QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~I-q~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
++||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+|+|.|+|+||++
T Consensus 749 IaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 749 VSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999866 667877778999999999999999999999999999999999999997
Q ss_pred cCCcHHHHHHHhh
Q 000553 1414 DECSVFSSFVRAS 1426 (1428)
Q Consensus 1414 ~~~s~f~~l~~~~ 1426 (1428)
+ ++.|+++++..
T Consensus 829 ~-~~~~~~l~~~~ 840 (1622)
T PLN03130 829 N-GPLFQKLMENA 840 (1622)
T ss_pred c-chhHHHHHHhc
Confidence 5 56899988754
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=605.35 Aligned_cols=469 Identities=20% Similarity=0.320 Sum_probs=322.0
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--cEEEEcCCCCC
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWI 683 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--~i~y~~Q~p~l 683 (1428)
+.++|++++|.. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++..
T Consensus 2 i~i~nls~~~g~------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~ 75 (638)
T PRK10636 2 IVFSSLQIRRGV------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75 (638)
T ss_pred EEEEEEEEEeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC
Confidence 578999999853 2359999999999999999999999999999999999999999999986 48999997644
Q ss_pred CcccHHHHHhcCCC-C---------------------------------ChHHHHHHHHHhcchHHHhcccCCCcccccC
Q 000553 684 LSGTIRDNILFGKN-Y---------------------------------DPQSYSETLKACTLDVDISLMVGGDMAYIGE 729 (1428)
Q Consensus 684 ~~~ti~~nI~~g~~-~---------------------------------~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~ 729 (1428)
+..|+.+.+.-+.. + .+.+.+++++.+++.. .....
T Consensus 76 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~ 145 (638)
T PRK10636 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN----------EQLER 145 (638)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc----------hhhcC
Confidence 44566665532100 0 0111222222222211 11234
Q ss_pred CCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeC
Q 000553 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDK 808 (1428)
Q Consensus 730 ~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~ 808 (1428)
...+|||||||||+|||||..+|++|||||||++||+.+..++.+. +.. .+.|+|+|||+++++.. ||+|++|++
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~-L~~---~~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW-LKS---YQGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHH-HHh---CCCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 5568999999999999999999999999999999999999998776 322 25799999999999875 999999999
Q ss_pred CeEE-EecChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHH
Q 000553 809 GQVK-WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELT 887 (1428)
Q Consensus 809 G~i~-~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 887 (1428)
|++. ..|+|++....... ... . ... ..+..+.+.++. .
T Consensus 222 G~i~~~~g~~~~~~~~~~~----------~~~--~---------~~~---------------~~~~~~~~~~~~-----~ 260 (638)
T PRK10636 222 QSLFEYTGNYSSFEVQRAT----------RLA--Q---------QQA---------------MYESQQERVAHL-----Q 260 (638)
T ss_pred CEEEEecCCHHHHHHHHHH----------HHH--H---------HHH---------------HHHHHHHHHHHH-----H
Confidence 9996 46777765421000 000 0 000 000000000000 0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 967 (1428)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 967 (1428)
-|+..+-.
T Consensus 261 --------------------------------~~i~r~~~---------------------------------------- 268 (638)
T PRK10636 261 --------------------------------SYIDRFRA---------------------------------------- 268 (638)
T ss_pred --------------------------------HHHHHhhh----------------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000553 968 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047 (1428)
Q Consensus 968 ~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p 1047 (1428)
+
T Consensus 269 -~------------------------------------------------------------------------------ 269 (638)
T PRK10636 269 -K------------------------------------------------------------------------------ 269 (638)
T ss_pred -h------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1127 (1428)
Q Consensus 1048 ~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1127 (1428)
.+..++.
T Consensus 270 ------------a~~~~~a------------------------------------------------------------- 276 (638)
T PRK10636 270 ------------ATKAKQA------------------------------------------------------------- 276 (638)
T ss_pred ------------hhhHHHH-------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-c-cccCCCCCCCCCCCccEEEEEEEEEECCCC
Q 000553 1128 RLQVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE-E-LCGYQSLSPDWPFQGLIEFQNVTMRYKPSL 1205 (1428)
Q Consensus 1128 ~l~~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e-~-~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~ 1205 (1428)
+......+|+.. .. +++ . .....-+++.-+.+..|+++||+++|++
T Consensus 277 ----------------------------~~r~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-- 324 (638)
T PRK10636 277 ----------------------------QSRIKMLERMEL-IA-PAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGD-- 324 (638)
T ss_pred ----------------------------HHHHHHHHHhhc-cc-ccccCCceeEecCCCccCCCceEEEEeeEEEeCC--
Confidence 000000111111 00 110 0 0000001111112336999999999964
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCc--cccC-Cc
Q 000553 1206 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSP--FLFE-GS 1282 (1428)
Q Consensus 1206 ~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp--~lf~-gT 1282 (1428)
.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .+++|+||++ .+.. .|
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEFLRADES 393 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhhCCccch
Confidence 46999999999999999999999999999999999999999999999741 2699999985 3443 37
Q ss_pred HHHhcCcCC-CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHH
Q 000553 1283 LRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360 (1428)
Q Consensus 1283 IR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~ 1360 (1428)
+.+++.... ...++++. +.+..+|+.. ........||||||||++||||++++|++|||||||++||..
T Consensus 394 ~~~~~~~~~~~~~~~~~~---------~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~ 464 (638)
T PRK10636 394 PLQHLARLAPQELEQKLR---------DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD 464 (638)
T ss_pred HHHHHHHhCchhhHHHHH---------HHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 887763211 11122233 3344445542 345556689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEE-EecChhHHhc
Q 000553 1361 TASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV-EQGNPQTLLQ 1413 (1428)
Q Consensus 1361 te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv-e~g~p~eLl~ 1413 (1428)
+...+.+.|++. . .|||+|||+++.+.. ||||++|++|+++ ..|++++..+
T Consensus 465 ~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 465 MRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999876 4 599999999999976 8999999999998 6799988743
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=589.19 Aligned_cols=446 Identities=19% Similarity=0.250 Sum_probs=339.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 000553 952 NSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIA 1031 (1428)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~ 1031 (1428)
..++.++..++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+. .+..++..++.+++.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344566777788888999999999999999999999999999999999999999999987554 4555666677777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcH---HHHHHHHHHHH
Q 000553 1032 VVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE---DYFMAKFKEHV 1108 (1428)
Q Consensus 1032 ~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e---~~~~~~~~~~~ 1108 (1428)
+++++.+|.++++++..+.+...+..+..+..+...+...+..+.+.+++.|.++|+.+++ ++.+ +.+.+++.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 7777778877665554444333333333333333333334556778899999999999996 5443 45666776666
Q ss_pred HHHHHHHHHHH----HHHHH--------------HHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1109 VLYQRTSYSEL----TASLW--------------LSLRLQ---VGL---ALSYAAPIVSLLGNFLSSFTETEKEMVSLER 1164 (1428)
Q Consensus 1109 ~~~~~~~~~~~----~~~~w--------------l~~~l~---~gl---~l~~~~~~~~~l~~~i~~~~~~e~~~~sveR 1164 (1428)
+...+..+... ....+ ++.... .+. ...+...+...+..+...+.++.....+.+|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 298 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNK 298 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543322211 11111 110000 011 1112223445677788888899999999999
Q ss_pred HHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 000553 1165 VLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1165 i~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~ 1244 (1428)
+.++.+.++|+......+ -|..+.|+|+||+|+|+++ +++|+|+||+|+|||++||+|+||||||||+++|+|+++
T Consensus 299 i~~l~~~~~~~~~~~~~~---~~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 299 LNKLALAPYKAEFPRPQA---FPDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred HHHHhccccccccccccc---cCcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 999976554322111111 1223679999999999743 569999999999999999999999999999999999999
Q ss_pred CCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhc--
Q 000553 1245 ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE-- 1322 (1428)
Q Consensus 1245 ~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e-- 1322 (1428)
|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| ....+|++++++++++++.+.+. .++
T Consensus 375 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~ 444 (547)
T PRK10522 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLE-------LEDGR 444 (547)
T ss_pred CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhh-------ccccC
Confidence 999999999999999999999999999999999999999999 23456778888887776654432 222
Q ss_pred -CCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeC
Q 000553 1323 -SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDH 1399 (1428)
Q Consensus 1323 -~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~ 1399 (1428)
+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++++..||+|++|++
T Consensus 445 ~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 524 (547)
T PRK10522 445 ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRN 524 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEEC
Confidence 378999999999999999999999999999999999999999999987654 48999999999999999999999999
Q ss_pred CeEEEe-cChhHHhc
Q 000553 1400 GHLVEQ-GNPQTLLQ 1413 (1428)
Q Consensus 1400 G~ive~-g~p~eLl~ 1413 (1428)
|+++|. |++.+-+.
T Consensus 525 G~i~e~~~~~~~~~~ 539 (547)
T PRK10522 525 GQLSELTGEERDAAS 539 (547)
T ss_pred CEEEEecCCchhhhh
Confidence 999987 55554443
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=632.12 Aligned_cols=545 Identities=19% Similarity=0.179 Sum_probs=397.9
Q ss_pred chHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 268 SLVRAICCAYGYPYIC-LGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSK 345 (1428)
Q Consensus 268 ~l~~~l~~~~~~~~~~-~~l~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1428)
+.++..+++.++.... .+++.++..++....|+.++...+.-. +.......+. .+.++++.++..++.....+....
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~iy~~l~i~~~~~~~~~~~~~~~ 1031 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR-LSVYGALGILQGFAVFGYSMAVSI 1031 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443322 233444555666778888876654221 1111111221 122333333334433334445556
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000553 346 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSG 424 (1428)
Q Consensus 346 ~~~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g 424 (1428)
.+.+.-..+...+|+|.++.+...++..+.|+++|.++.|++.+..... .+..+...++.++.++.++.....+.+++.
T Consensus 1032 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~ 1111 (1522)
T TIGR00957 1032 GGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII 1111 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888889999999999999999999999999999999988654 344555566665555444433333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1428)
Q Consensus 425 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1428)
++++++...+..+..+..+..++...+.++...+..+|.++|+++||.||+|+.|.++..+..+...+..........+.
T Consensus 1112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1112 PPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333334444444455555566667777899999999999999999999988887766554444433322223332
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhh
Q 000553 505 VFFWATTPTLFSLFTFGLFAL-MGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1428)
Q Consensus 505 ~~~~~~~~~~~~~~~f~~y~~-~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 583 (1428)
.........+ .++..+.+.+ ..+.++++.+..++.+...+..|+..+...+..+..+.+|.+||.+|++.++..+...
T Consensus 1192 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1270 (1522)
T TIGR00957 1192 AVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI 1270 (1522)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 2221111111 1122233333 3467999999999999999999999999999999999999999999997654322100
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC
Q 000553 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~ 663 (1428)
. ...++. .-+..+.|+++|++|+|+++. +++|+|+||+|++||.++|||++|||||||+++|+|.++|
T Consensus 1271 ~-~~~~~~-------~wp~~g~I~f~nVsf~Y~~~~----~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1271 Q-ETAPPS-------GWPPRGRVEFRNYCLRYREDL----DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred c-CCCCCC-------CCCCCCcEEEEEEEEEeCCCC----cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 0 000100 002346799999999997542 2359999999999999999999999999999999999999
Q ss_pred CCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCC
Q 000553 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1428)
Q Consensus 664 ~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~ 730 (1428)
++|+|.++| +|+||||+|.+|+|||||||....+++++...++++.|++++.+..+|+|.+|.+||+
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 999999987 5999999999999999999983336888899999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCe
Q 000553 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1428)
Q Consensus 731 g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 810 (1428)
|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+. +.. ..+++|+|+|+||++.+..||+|++|++|+
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~-l~~-~~~~~TvI~IAHRl~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST-IRT-QFEDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999887776 443 567899999999999999999999999999
Q ss_pred EEEecChHHHHhccccCc
Q 000553 811 VKWIGSSADLAVSLYSGF 828 (1428)
Q Consensus 811 i~~~g~~~el~~~~~~~~ 828 (1428)
|+|.|+|+||+++.+.+.
T Consensus 1497 IvE~G~~~eLl~~~~~f~ 1514 (1522)
T TIGR00957 1497 VAEFGAPSNLLQQRGIFY 1514 (1522)
T ss_pred EEEECCHHHHHhCCCHHH
Confidence 999999999987654433
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-58 Score=532.53 Aligned_cols=511 Identities=24% Similarity=0.302 Sum_probs=407.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc--CCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000553 289 VVNDSIGFAGPLLLNKLIKFLQQ--GSG--HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLY 364 (1428)
Q Consensus 289 l~~~~~~~~~P~ll~~li~~~~~--~~~--~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~Iy~K~L~ 364 (1428)
+..-.+....|++++.+++.+.+ ..+ .......+.+++++.++.+++.-........+..++-......+|++.+.
T Consensus 40 ~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ 119 (591)
T KOG0057|consen 40 LGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMS 119 (591)
T ss_pred HhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33356677899999999999864 222 22334566677777788888877777777888888888888999999999
Q ss_pred CCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000553 365 VRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI-LLIPVNKWIANLI 442 (1428)
Q Consensus 365 l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~-~~~~~~~~~~~~~ 442 (1428)
++.+...+..+|++.+.|.--...|..... .+..+....+++.++...+++..|.+..+...+.+ ........+..+-
T Consensus 120 ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~R 199 (591)
T KOG0057|consen 120 LDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWR 199 (591)
T ss_pred hhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHH
Confidence 999988888999999999888888887654 45666777888999888999999987655443333 3334455566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000553 443 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTR-SSEVKHLSTRKYLDAWCVFFWATTPTLF-SLFTF 520 (1428)
Q Consensus 443 ~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R-~~El~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f 520 (1428)
.+.+++++++.++..+..-+.|.|-.+||.|+-|+...++....- +.|-...+..+ ..++.++. ...+. ...++
T Consensus 200 n~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~-sl~~lnfg---Q~~iFsv~~~~ 275 (591)
T KOG0057|consen 200 NRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSS-SLAFLNFG---QKAIFSVALTF 275 (591)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHh-HHHHHHHH---HHHHHHHHHHH
Confidence 788999999999999999999999999999999999888876653 22322222221 12222222 11111 22333
Q ss_pred HHHH----HhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCC
Q 000553 521 GLFA----LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGL 596 (1428)
Q Consensus 521 ~~y~----~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~ 596 (1428)
..|. +.++.+|.+...-..+++..|..|+..|...+..+.++..-++-....++.++ + . +....|.
T Consensus 276 im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~--~-i-~~~~~~i------ 345 (591)
T KOG0057|consen 276 IMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDE--D-I-QEAALPI------ 345 (591)
T ss_pred HHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh--h-h-hhccCCc------
Confidence 3333 44568999999999999999999999999999999888877765543332111 1 1 1000111
Q ss_pred ccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----
Q 000553 597 SNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---- 672 (1428)
Q Consensus 597 ~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---- 672 (1428)
...+..|+|+|++|+|.++ +++|+++||+|++||.+||+|+|||||||++++|+++++ ++|+|.++|
T Consensus 346 ---~~~~~~I~F~dV~f~y~~k-----~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik 416 (591)
T KOG0057|consen 346 ---ELFGGSIEFDDVHFSYGPK-----RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIK 416 (591)
T ss_pred ---ccCCCcEEEEeeEEEeCCC-----CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHh
Confidence 1334569999999999742 346999999999999999999999999999999999999 999999988
Q ss_pred ---------cEEEEcCCCCCCcccHHHHHhcCCCC-ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 ---------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.||||||+..|||+||.+||.+|++. .+++..++++..++++-+..+|+|++|.+||+|..|||||||||
T Consensus 417 ~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrv 496 (591)
T KOG0057|consen 417 EVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRV 496 (591)
T ss_pred hhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHH
Confidence 49999999999999999999999874 56677788888899999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHh
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
+||||+.+||+|+++|||||+||.+|++.+++. +.+ ...+||+|+|-||+..++.+|+|++++||++.++|+++|++.
T Consensus 497 slaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~-i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 497 SLARAFLKDAPILLLDEATSALDSETEREILDM-IMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHhcCCCeEEecCcccccchhhHHHHHHH-HHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999999999999998 555 678999999999999999999999999999999999999987
Q ss_pred cc
Q 000553 823 SL 824 (1428)
Q Consensus 823 ~~ 824 (1428)
..
T Consensus 575 ~s 576 (591)
T KOG0057|consen 575 PS 576 (591)
T ss_pred hh
Confidence 43
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-59 Score=593.74 Aligned_cols=203 Identities=24% Similarity=0.299 Sum_probs=165.3
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999964 46999999999999999999999999999999999999999999999 4332 599
Q ss_pred EEeCCc-cccCC-cHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1271 VVPQSP-FLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~VpQdp-~lf~g-TIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
|++|++ .+++. ||++|+..... ....... ..+.+.+..+|+.. ........||||||||++||||++.+|+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRP-----RHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchH-----HHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 999986 46655 99999964321 1100000 01223344445532 3445556899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEe-CCeEEEe-cChhHHhc
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD-HGHLVEQ-GNPQTLLQ 1413 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~-~G~ive~-g~p~eLl~ 1413 (1428)
+|||||||++||..+.+.+.+.|++. +.|||+|||+++.+.. ||+|++|+ +|++.++ |++++.++
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999875 5699999999999876 89999998 8999875 78888754
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=621.36 Aligned_cols=211 Identities=20% Similarity=0.299 Sum_probs=172.7
Q ss_pred cEEEEEEEEEECC-----------CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCeeC
Q 000553 1191 LIEFQNVTMRYKP-----------SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNI 1257 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~-----------~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~--~~G~I~IDG~di 1257 (1428)
.+.|+||++.++. +...+|+|||++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998752 123699999999999999999999999999999999999873 689999999886
Q ss_pred CCCChHhHhcceEEEeCCccccCC-cHHHhcCcCC------CCChHH----HHHHHHHccHHHHHHhCCCchhhhcCC-C
Q 000553 1258 INTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFH------MNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESG-I 1325 (1428)
Q Consensus 1258 ~~i~~~~lR~~i~~VpQdp~lf~g-TIR~NLdp~~------~~~d~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G-~ 1325 (1428)
. ....|+.++||+|++.+++. ||+|||.+.. ..++++ +.++++..+|.+. .|+.+|..+ .
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-----~~~~vg~~~~~ 1018 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-----KDAIVGLPGVT 1018 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-----hCCccCCCCCC
Confidence 4 24567889999999988765 9999996421 122222 3344555544332 255565433 4
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-h-hhcCEEEEEeC-Ce
Q 000553 1326 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDH-GH 1401 (1428)
Q Consensus 1326 ~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~t-i-~~~DrI~Vl~~-G~ 1401 (1428)
.||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||++++|++ |+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 799999999999999999999999999999999999999999998864 48999999999984 4 56899999996 89
Q ss_pred EEEecChh
Q 000553 1402 LVEQGNPQ 1409 (1428)
Q Consensus 1402 ive~g~p~ 1409 (1428)
++++|++.
T Consensus 1099 ~v~~G~~~ 1106 (1470)
T PLN03140 1099 VIYSGPLG 1106 (1470)
T ss_pred EEEECCcc
Confidence 99999874
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=579.87 Aligned_cols=200 Identities=22% Similarity=0.330 Sum_probs=162.3
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcc
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1268 (1428)
+..++++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.+
T Consensus 506 ~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 506 PPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred CceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 3469999999999643 4699999999999999999999999999999999999999999999875 347
Q ss_pred eEEEeCCccccCCcHHHhcC-c----CCCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1269 FAVVPQSPFLFEGSLRDNLD-P----FHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1269 i~~VpQdp~lf~gTIR~NLd-p----~~~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
++|+||++. ...++.+|.. . +...+++++.++|+.. |++. ........||||||||++||||++
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~---------gl~~~~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF---------GVTGNLALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHC---------CCChHHhcCCccccCHHHHHHHHHHHHHh
Confidence 999999973 2224444421 1 1122344454444444 4542 334556789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEE-EecChhHHh
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV-EQGNPQTLL 1412 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv-e~g~p~eLl 1412 (1428)
++|++|||||||++||..+.+.+.+.+++. + .|||+|||+++.+.. ||||++|++|+++ ..|++++..
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999998888764 4 499999999999986 8999999999998 568887653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=604.59 Aligned_cols=469 Identities=18% Similarity=0.212 Sum_probs=353.9
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000553 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 427 (1428)
Q Consensus 349 ~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v 427 (1428)
+....+...+|++.++.+...++..+.|+++|.++.|++.+...+. .+..+....+.++.++.++.....+.+++.+++
T Consensus 1028 ~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1028 RGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667889999999999999999999999999999999998654 344555555555544444333322333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF 507 (1428)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~ 507 (1428)
+++...+..++.+..+..++......+.-.+.++|.++|+++||.|+.|+.+.++..+.-+...+...+......+....
T Consensus 1108 ~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~ 1187 (1560)
T PTZ00243 1108 GYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVR 1187 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334445555556666666777778899999999999999999999988887665444443333222222222221
Q ss_pred HHHHH--HHHHHHHHHHH--HHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCch--h
Q 000553 508 WATTP--TLFSLFTFGLF--ALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH--E 581 (1428)
Q Consensus 508 ~~~~~--~~~~~~~f~~y--~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~--~ 581 (1428)
..... ..+.++.++++ ....+.++++.+..++.+...+..|+..+...+..+.++..|++||.+|++..+.++ .
T Consensus 1188 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~ 1267 (1560)
T PTZ00243 1188 VEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPE 1267 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 11111 11112222222 222345789988888888899999999999999999999999999999996432111 0
Q ss_pred hhh-------hcCCCCc------ccCCC----ccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEc
Q 000553 582 LEQ-------AANSPSY------ISNGL----SNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIG 644 (1428)
Q Consensus 582 ~~~-------~~~~~~~------~~~~~----~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG 644 (1428)
... ....+.+ ..... .......+.|+|+|++|+|+++. +++|+|+||+|++||.++|||
T Consensus 1268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~----~~vL~~vsf~I~~GekVaIVG 1343 (1560)
T PTZ00243 1268 LDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGL----PLVLRGVSFRIAPREKVGIVG 1343 (1560)
T ss_pred ccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCC----CceeecceEEECCCCEEEEEC
Confidence 000 0000000 00000 00011245799999999997532 235999999999999999999
Q ss_pred CCCCcHHHHHHHHHcCccCCCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhc
Q 000553 645 EVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711 (1428)
Q Consensus 645 ~~GsGKStll~~llG~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~ 711 (1428)
++|||||||+++|+|.++|++|+|.++| .|+|+||+|.||+|||||||..+.++++++..++++.|+
T Consensus 1344 rTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~ 1423 (1560)
T PTZ00243 1344 RTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVG 1423 (1560)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCC
Confidence 9999999999999999999999999987 599999999999999999998877889999999999999
Q ss_pred chHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccC-CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEE
Q 000553 712 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG-SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790 (1428)
Q Consensus 712 l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~-~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilv 790 (1428)
+++.+..+|+|.+|.+||+|.+|||||||||+||||++++ |+|||||||||+||+++.+.|.+. +.. ..+++|+|+|
T Consensus 1424 l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~-~~~~~TvI~I 1501 (1560)
T PTZ00243 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMS-AFSAYTVITI 1501 (1560)
T ss_pred ChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HCCCCEEEEE
Confidence 9999999999999999999999999999999999999996 899999999999999999988776 443 4578999999
Q ss_pred ccCcchhhcCCEEEEEeCCeEEEecChHHHHhc
Q 000553 791 THNVQAISAADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 791 th~~~~l~~ad~i~~l~~G~i~~~g~~~el~~~ 823 (1428)
+||++.+..||+|++|++|+|++.|+++|++++
T Consensus 1502 AHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1502 AHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred eccHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999864
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=509.76 Aligned_cols=487 Identities=21% Similarity=0.271 Sum_probs=365.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000553 322 AIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWS 401 (1428)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~w~ 401 (1428)
+++.=+..+..++..+.-.........++-+.+...+|+|....+......+..|++.|.+..|++.+++...-+..-|.
T Consensus 61 ~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~ 140 (573)
T COG4987 61 SAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAV 140 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHH
Confidence 33444556677776665566677788899999999999999999988888889999999999999999997654433332
Q ss_pred H--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHH
Q 000553 402 L--PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIF 479 (1428)
Q Consensus 402 ~--p~~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~ 479 (1428)
. .+.+++.+.+-+..++.+.+.++...++...+...+.+.-++..++..+.+..--+.+.+.+.|..-.+++|-++.+
T Consensus 141 ~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~ 220 (573)
T COG4987 141 VALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAY 220 (573)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHH
Confidence 2 22233333344566777777776655555555555666666666666666777778889999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCCc-HhHHHHHHHHHHHHHHHHHHHHHH
Q 000553 480 SSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLF---SLFTFGLFALMGHQLD-AAMVFTCLALFNSLISPLNSFPWV 555 (1428)
Q Consensus 480 ~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~y~~~~~~Lt-~~~~ft~l~l~~~l~~pl~~l~~~ 555 (1428)
.+.+.+.-..=.+.-+|...+..+..++..+...+. .+++++.-.-.| ..+ +..+...+..|..+..-....|.+
T Consensus 221 ~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G-~~~~~~aa~~ll~~f~~~eaf~~L~~~A 299 (573)
T COG4987 221 RTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAG-ALAQPGAALALLVIFAALEAFEPLAPGA 299 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-CcchhHHHHHHHHHHHHHHHHhhhcchh
Confidence 887765432222222333333333333322221111 112222111122 343 333333333343333211222367
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEec
Q 000553 556 INGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 635 (1428)
Q Consensus 556 i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~ 635 (1428)
+..+.+...|.+|+.+.++.++..... . ... ...+..++++|++|+|+..+ .++|+|+||+++
T Consensus 300 ~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~-~~~-----------~~~~~~l~~~~vsF~y~~~~----~~~L~~~~l~l~ 362 (573)
T COG4987 300 FQHLGQVIASARRLNDILDQKPEVTFP-D-EQT-----------ATTGQALELRNVSFTYPGQQ----TKALKNFNLTLA 362 (573)
T ss_pred HHHhhHHHHHHHHHhhhccCCcccCCC-c-ccc-----------CCccceeeeccceeecCCCc----cchhhccceeec
Confidence 788889999999999998765432211 0 001 11222789999999998642 345999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCCC-ChH
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY-DPQ 701 (1428)
Q Consensus 636 ~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~ 701 (1428)
+||.++|+|++|||||||++.|.|.++|++|+|..+| .|++++|.+.+|++|+|||+..+++. ++|
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDE 442 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDE 442 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHH
Confidence 9999999999999999999999999999999999987 58999999999999999999999874 678
Q ss_pred HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc
Q 000553 702 SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781 (1428)
Q Consensus 702 ~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~ 781 (1428)
...++++..+|++-++..|+|.+|.+||+|..||||||||++|||++.+|++++||||||.+||+.|++++++. +.. .
T Consensus 443 el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l-l~~-~ 520 (573)
T COG4987 443 ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFE-H 520 (573)
T ss_pred HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH-HHH-H
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999997 443 6
Q ss_pred cCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHhccccCc
Q 000553 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGF 828 (1428)
Q Consensus 782 ~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~~~~~~~ 828 (1428)
.+|||+|+|||++..++.+|+|++|++|+++++|+|.+++.+++.+.
T Consensus 521 ~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~ 567 (573)
T COG4987 521 AEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYK 567 (573)
T ss_pred hcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHH
Confidence 77999999999999999999999999999999999999987665543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-57 Score=551.09 Aligned_cols=484 Identities=23% Similarity=0.310 Sum_probs=338.4
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--cEEEEcCCCC
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPW 682 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--~i~y~~Q~p~ 682 (1428)
.+.++|++.++.. +.+|+|+||++.+|+.++|||+|||||||||++|.|+..|++|+|...+ ++||++|+|.
T Consensus 3 ~i~~~~ls~~~g~------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEeeCC------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC
Confidence 4788899999843 3459999999999999999999999999999999999999999999986 7999999999
Q ss_pred CCcc-cHHHHHhcCCCCC---hHHHHHHH---------------------HHhcchHHHhcccCC--CcccccCCCCccc
Q 000553 683 ILSG-TIRDNILFGKNYD---PQSYSETL---------------------KACTLDVDISLMVGG--DMAYIGEKGVNLS 735 (1428)
Q Consensus 683 l~~~-ti~~nI~~g~~~~---~~~~~~v~---------------------~~c~l~~di~~l~~g--d~t~ig~~g~~LS 735 (1428)
.... ||+|.+..|...- ..+|+.+. +...++.+++..-.| .... .....+||
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS 155 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS 155 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence 9865 9999998774210 01111111 111222233222222 1111 34556899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEE-E
Q 000553 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK-W 813 (1428)
Q Consensus 736 GGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~-~ 813 (1428)
||||.||+|||||..+||+|||||||++||..+.+|+-+.+. ..+| |+|+||||.+||+. |++|+.++.|++. +
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~---~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y 231 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK---RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPY 231 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence 999999999999999999999999999999999999988732 2345 99999999999997 9999999999775 5
Q ss_pred ecChHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHH
Q 000553 814 IGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYA 893 (1428)
Q Consensus 814 ~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~ 893 (1428)
.|.|+...+..... . .. +. ...+..+++.++
T Consensus 232 ~Gny~~~~~~r~~~----------~---~~----------------~~-------~~~~~~~~~~~~------------- 262 (530)
T COG0488 232 KGNYSSYLEQKAER----------L---RQ----------------EA-------AAYEKQQKELAK------------- 262 (530)
T ss_pred cCCHHHHHHHHHHH----------H---HH----------------HH-------HHHHHHHHHHHH-------------
Confidence 67777665321000 0 00 00 000000000000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 894 KFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVK 973 (1428)
Q Consensus 894 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1428)
+..|++.
T Consensus 263 ----------------------------~~~~i~r--------------------------------------------- 269 (530)
T COG0488 263 ----------------------------EQEWIRR--------------------------------------------- 269 (530)
T ss_pred ----------------------------HHHHHHH---------------------------------------------
Confidence 0001100
Q ss_pred HHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000553 974 VHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYS 1053 (1428)
Q Consensus 974 lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~ 1053 (1428)
+.
T Consensus 270 ----------------------------~~-------------------------------------------------- 271 (530)
T COG0488 270 ----------------------------GK-------------------------------------------------- 271 (530)
T ss_pred ----------------------------HH--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1054 KLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGL 1133 (1428)
Q Consensus 1054 ~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl 1133 (1428)
....++++.
T Consensus 272 ----~~~~~~k~a------------------------------------------------------------------- 280 (530)
T COG0488 272 ----AAASKAKKA------------------------------------------------------------------- 280 (530)
T ss_pred ----hccchHHHH-------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCccccccC--CCCCCC-CCCCccEEEEEEEEEECCCCCcc
Q 000553 1134 ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY--MDVPQEELCGY--QSLSPD-WPFQGLIEFQNVTMRYKPSLPAA 1208 (1428)
Q Consensus 1134 ~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~--~~~~~e~~~~~--~~~~~~-wp~~g~I~f~nvs~~Y~~~~~~v 1208 (1428)
+......+|+.+- ...|.+..... ..+++. -+.+-.++++|+++.|+++ +++
T Consensus 281 ----------------------~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l 337 (530)
T COG0488 281 ----------------------KSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLL 337 (530)
T ss_pred ----------------------HHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC-cee
Confidence 0001111222211 00111100000 011111 1224479999999999765 679
Q ss_pred ceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCc-cccC-CcHHHh
Q 000553 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSP-FLFE-GSLRDN 1286 (1428)
Q Consensus 1209 L~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp-~lf~-gTIR~N 1286 (1428)
++++||.|.+|++|||+||||+|||||+++|.|...|.+|+|.+.- .-++||.+|+- .+++ .|+-++
T Consensus 338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----------~v~igyf~Q~~~~l~~~~t~~d~ 406 (530)
T COG0488 338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----------TVKIGYFDQHRDELDPDKTVLEE 406 (530)
T ss_pred ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----------ceEEEEEEehhhhcCccCcHHHH
Confidence 9999999999999999999999999999999999999999998753 12699999998 3443 388888
Q ss_pred cCcCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHH
Q 000553 1287 LDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365 (1428)
Q Consensus 1287 Ldp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~I 1365 (1428)
+..... ..+.++...|.+.++... .+......||||||-|+.||+.++.+|++|||||||++||.+|.+.+
T Consensus 407 l~~~~~~~~e~~~r~~L~~f~F~~~--------~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aL 478 (530)
T COG0488 407 LSEGFPDGDEQEVRAYLGRFGFTGE--------DQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478 (530)
T ss_pred HHhhCccccHHHHHHHHHHcCCChH--------HHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHH
Confidence 865432 235666666666554321 12233447999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEe-cChhHHhccC
Q 000553 1366 QNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQ-GNPQTLLQDE 1415 (1428)
Q Consensus 1366 q~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~-g~p~eLl~~~ 1415 (1428)
.++|.++ +-|||+|+|+.+.+.. |++|+++++ ++.++ |.+++..+..
T Consensus 479 e~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 479 EEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred HHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 9999864 4599999999999987 799999999 88887 8998887643
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-55 Score=549.69 Aligned_cols=521 Identities=15% Similarity=0.113 Sum_probs=373.5
Q ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 273 ICC-AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1428)
Q Consensus 273 l~~-~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 351 (1428)
+++ .+++.++..+++.++..++....|.+++.+++..... .....+ + +++..++..++.....+...+.+.++.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL-GQGSLF-S---FGGLCLLALLFRIGADIFPAYAGMHII 85 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cchHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 7788888888899999999999999999887632111 111111 1 112233334455556666788889999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHH
Q 000553 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL-LYTQVKFAFVSGLAITIL 430 (1428)
Q Consensus 352 ~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~w~~p~~i~i~~~l-L~~~lg~a~l~g~~v~~~ 430 (1428)
..+...+|+|.++++...+.+.++|++++.++.|++.+......+..+....+.+++++.+ ++....++.+ .++++++
T Consensus 86 ~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li-~l~~~~~ 164 (555)
T TIGR01194 86 ANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAI-TISAIII 164 (555)
T ss_pred HHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHH
Confidence 9999999999999999888888999999999999999998765555555444444333332 2222222222 2222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 431 LIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQ--IFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1428)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~--~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1428)
.+.+..+..++.++..++..+..++..+.+.|.+.|+++||.++.++ ...+++.+.-++-.+...+..........+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFG 244 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566667777788888899999999999999999999854 3333333322111111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHH---hCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhh
Q 000553 509 ATTPTLFSLFTFGLFAL---MGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQA 585 (1428)
Q Consensus 509 ~~~~~~~~~~~f~~y~~---~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~ 585 (1428)
... ..+.++.+.+ ..+.++.+.+++++.+...+..|+..+...++.+.++.+|.+||.++++.++.++.....
T Consensus 245 ~~~----~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~ 320 (555)
T TIGR01194 245 QLL----FFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELEL 320 (555)
T ss_pred HHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 111 1111111111 125799999999999999999999999999999999999999999998642211100000
Q ss_pred cCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCC
Q 000553 586 ANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1428)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~ 665 (1428)
..... ............++++|++|+|+..+. ..+++|+|+||++++|++++|+||||||||||+++|+|+++|++
T Consensus 321 ~~~~~---~~~~~~~~~~~~i~~~~v~f~y~~~~~-~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~ 396 (555)
T TIGR01194 321 SDADN---VLLLAHDKSVDSIELKDVHMNPKAPEG-SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396 (555)
T ss_pred ccccc---ccccccCCCCceEEEEEEEEEeCCCCC-CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 00000 000000012356999999999975311 11246999999999999999999999999999999999999999
Q ss_pred eEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 666 GSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 666 G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
|+|.++| .++|++|+|++|++|+++|+ ..+.++++..++++.++++++++.+|+|++|. .
T Consensus 397 G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~ 469 (555)
T TIGR01194 397 GEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----T 469 (555)
T ss_pred cEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----c
Confidence 9999876 48999999999999999996 33456778889999999999999999999984 7
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEE
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 812 (1428)
+||||||||++||||++++|+|+|||||||+||+++++.+.+.++.....+++|+|+|||+++.+..||+|++|++|+++
T Consensus 470 ~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 470 ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIV 549 (555)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999988764322123579999999999999999999999999998
Q ss_pred Ee
Q 000553 813 WI 814 (1428)
Q Consensus 813 ~~ 814 (1428)
+.
T Consensus 550 ~~ 551 (555)
T TIGR01194 550 KD 551 (555)
T ss_pred Ee
Confidence 64
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-57 Score=566.15 Aligned_cols=191 Identities=21% Similarity=0.290 Sum_probs=161.1
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEeCCcccc-CCcHHHhcCcCC-CCC-hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1271 VVPQSPFLF-EGSLRDNLDPFH-MND-DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1271 ~VpQdp~lf-~gTIR~NLdp~~-~~~-d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
|+||++.++ +.|+++|+.... ... +... .+.++.+|++.........||||||||++|||||+++|+|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~---------~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYK---------SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHH---------HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999998754 569999986431 111 1122 3344445666555666778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecC
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1407 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~ 1407 (1428)
|||||||++||.++...+.+.|++.. .++|+|+|+|+++.+.. ||||++|++ ++...|+
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999998864 37899999999999876 899999964 8877666
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-56 Score=506.91 Aligned_cols=460 Identities=22% Similarity=0.282 Sum_probs=343.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHH-HHHHHHHH
Q 000553 946 CIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI-LNILLANF 1024 (1428)
Q Consensus 946 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~-l~~~~~~~ 1024 (1428)
..+.++.+++..+|.+.+.+.+.+.-.+++..++...+++|..--...+....++ |++.+...+... ...++..=
T Consensus 70 l~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~Lr----DL~qvR~Fltg~g~~A~fDaP 145 (580)
T COG4618 70 LGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLR----DLDQVRQFLTGTGLTAFFDAP 145 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccchh----hHHHHHHHHcCCCcchhcCCc
Confidence 3445567788889999999999999999999999999888775544444444443 555554443211 11111100
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHH
Q 000553 1025 VGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1104 (1428)
Q Consensus 1025 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~ 1104 (1428)
... ..+.+++...||+.++.+.-.++...+...-...+++--....+....-..+..-+..+.++|+|.|......+++
T Consensus 146 W~P-~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW 224 (580)
T COG4618 146 WMP-LYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRW 224 (580)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHH
Confidence 011 1122333445665554443333332222222222222222233333444567778899999999999987666665
Q ss_pred HHH----HHHHHHHHHHHH---HHHHHHHHHHH-----------------HHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000553 1105 KEH----VVLYQRTSYSEL---TASLWLSLRLQ-----------------VGLALSYAAP---IVSLLGNFLSSFTETEK 1157 (1428)
Q Consensus 1105 ~~~----~~~~~~~~~~~~---~~~~wl~~~l~-----------------~gl~l~~~~~---~~~~l~~~i~~~~~~e~ 1157 (1428)
.+. ++...++..... ...+-+-..++ .|..+.-.+. ....+-..+..|.+...
T Consensus 225 ~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~ 304 (580)
T COG4618 225 GRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVA 304 (580)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHH
Confidence 544 333333332221 22233322233 2222222222 12345678999999999
Q ss_pred HHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHH
Q 000553 1158 EMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1237 (1428)
Q Consensus 1158 ~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~ 1237 (1428)
+..|..|+.++++..++.... ...|. .+|.+.++++++.=|+..+++|+|+||+++|||-+||+||||||||||.+
T Consensus 305 Ar~s~~Rl~~lL~~~p~~~~~-m~LP~---P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR 380 (580)
T COG4618 305 ARQSYKRLNELLAELPAAAER-MPLPA---PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLAR 380 (580)
T ss_pred HHHHHHHHHHHHHhCccccCC-CCCCC---CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHH
Confidence 999999999999766554221 11111 36899999999976666679999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--
Q 000553 1238 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV-- 1314 (1428)
Q Consensus 1238 ~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l-- 1314 (1428)
+|.|..+|.+|.|.+||-|+++++.+++-++|||.|||-.||+|||+|||.-|+ +.+++.|.+|.+.++.+|.|-.+
T Consensus 381 ~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~ 460 (580)
T COG4618 381 LLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQ 460 (580)
T ss_pred HHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcC
Confidence 999999999999999999999999999999999999999999999999997766 66778899999999999999999
Q ss_pred CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhcCE
Q 000553 1315 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDE 1393 (1428)
Q Consensus 1315 gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~Dr 1393 (1428)
||||.+||+|..||||||||++||||+..+|++++||||.||||.+-|+.+.++|.+.. +++|+|+||||.+.+..+|+
T Consensus 461 GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dk 540 (580)
T COG4618 461 GYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDK 540 (580)
T ss_pred CccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcce
Confidence 99999999999999999999999999999999999999999999999999999987664 69999999999999999999
Q ss_pred EEEEeCCeEEEecChhHHhcc
Q 000553 1394 ILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1394 I~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|+||++|++..+|+-+|.+++
T Consensus 541 ilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 541 ILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred eeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999874
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=502.20 Aligned_cols=515 Identities=23% Similarity=0.304 Sum_probs=380.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLA---IALGLTS---ILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 359 (1428)
Q Consensus 286 l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~ir~~L~~~Iy 359 (1428)
++.++.-++...-|.+.+.+++.+.. +...-+.+. +.+.+.+ .+..++.+...+...++..-..-.+...+|
T Consensus 222 ~ll~i~rli~~~~pi~~k~iv~~lta--p~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lf 299 (790)
T KOG0056|consen 222 FLLIIGRLINVSLPILSKWIVDELTA--PDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELF 299 (790)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcC--cchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHH
Confidence 34444556677789999999888763 222222222 2222222 122455555666555666556667788899
Q ss_pred HHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHH
Q 000553 360 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI---LLIPVNK 436 (1428)
Q Consensus 360 ~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v~~---~~~~~~~ 436 (1428)
+|...++...--...+|++...|..-++.+...-..+..+-...+.+++++. |..+..-...|+++++ +...+..
T Consensus 300 rHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~v--YF~~~Fn~wFgLIVfl~m~lY~~~Ti 377 (790)
T KOG0056|consen 300 RHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMV--YFFIKFNIWFGLIVFLMMLLYCYVTI 377 (790)
T ss_pred HHHHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhh--hhhhhHhHHHHHHHHHHHHHHhheee
Confidence 9999988766555678999999877766665332333333334444554443 3333333444444333 2222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSW----LMKTRSSEVKHLSTRKYLDAWCVFFWATTP 512 (1428)
Q Consensus 437 ~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~----i~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 512 (1428)
.+...-.+++++++..-.+--..-.+.|-|-.+||.|+.|+...++ |.+..++|-+.+.....+....+.+....
T Consensus 378 ~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg- 456 (790)
T KOG0056|consen 378 KITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG- 456 (790)
T ss_pred eeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-
Confidence 3444445667776666556566677888999999999998765554 44444555554443333332222221111
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcc
Q 000553 513 TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYI 592 (1428)
Q Consensus 513 ~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~ 592 (1428)
+....-+.+|.+..+.+|.|...-.+.++-.+..|++.+......+....+-++|+.+.++.++...+.. +.++
T Consensus 457 -ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P---~a~p-- 530 (790)
T KOG0056|consen 457 -LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP---GAPP-- 530 (790)
T ss_pred -HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC---CCCC--
Confidence 1122234566667788999988888889999999999999999999999999999999997543221111 1111
Q ss_pred cCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC
Q 000553 593 SNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672 (1428)
Q Consensus 593 ~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~ 672 (1428)
.....+.|+++|++|+|+++ +| +|+||||+++||+.+++|||+|+||||+++.+.+.++..+|+|.++|
T Consensus 531 ------l~~~~G~i~fsnvtF~Y~p~--k~---vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDg 599 (790)
T KOG0056|consen 531 ------LKVTQGKIEFSNVTFAYDPG--KP---VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDG 599 (790)
T ss_pred ------ccccCCeEEEEEeEEecCCC--Cc---eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcC
Confidence 12356789999999999854 34 49999999999999999999999999999999999999999999987
Q ss_pred -------------cEEEEcCCCCCCcccHHHHHhcCCCC-ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHH
Q 000553 673 -------------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1428)
Q Consensus 673 -------------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQ 738 (1428)
+||.|||+..|||+||..||.++++- ..|...++.+|.+.++.|..+|+|++|.|||+|-.||||+
T Consensus 600 qdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGE 679 (790)
T KOG0056|consen 600 QDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGE 679 (790)
T ss_pred chHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcc
Confidence 59999999999999999999999874 3455567789999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChH
Q 000553 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 739 kqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~ 818 (1428)
|||||+||++.++|.|++|||+|||||.++++.|-.. +.. +..++|.|+|.||++.+-+||.|+++++|+|+|.|+|+
T Consensus 680 KQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaa-L~r-lca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~He 757 (790)
T KOG0056|consen 680 KQRVAIARTILKAPSIILLDEATSALDTNTERAIQAA-LAR-LCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHE 757 (790)
T ss_pred hhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHH-HHH-HhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHH
Confidence 9999999999999999999999999999999987654 433 67899999999999999999999999999999999999
Q ss_pred HHHhcc
Q 000553 819 DLAVSL 824 (1428)
Q Consensus 819 el~~~~ 824 (1428)
|+.+.+
T Consensus 758 eLl~rd 763 (790)
T KOG0056|consen 758 ELLKRD 763 (790)
T ss_pred HHHhcc
Confidence 998773
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=561.16 Aligned_cols=521 Identities=23% Similarity=0.283 Sum_probs=370.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCC-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQT-KYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFG 966 (1428)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~ 966 (1428)
..+.-++..++..+...++.. +........+..+...++....... ......|....++..++.+++.-...+.....
T Consensus 191 l~~al~~~f~~~~~~~~~~~~-~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~ 269 (1381)
T KOG0054|consen 191 LLRALLRTFGRTFLLSGIFLF-LRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRV 269 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 444444444444433333322 2233355666677666554322211 22223344444444555555555555666778
Q ss_pred HHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000553 967 SLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLV 1046 (1428)
Q Consensus 967 ~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1046 (1428)
+.|.-..+-..++++.++..-.--..++.|+|+|-++.|.+.+++..+..-..+...+-.+++...+.-...+ -+++.+
T Consensus 270 g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~-sa~~G~ 348 (1381)
T KOG0054|consen 270 GMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGP-SALAGV 348 (1381)
T ss_pred hhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHH
Confidence 8888888888999999999988888889999999999999999998876655554444333322222111111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHH----H-HHHHHH
Q 000553 1047 PFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRT----S-YSELTA 1121 (1428)
Q Consensus 1047 p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~----~-~~~~~~ 1121 (1428)
.+++++.-++.+..+..+..+......+..-....+|.++|+++||.|+||+.|.++..+.-+.-.+. . +.....
T Consensus 349 ~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~ 428 (1381)
T KOG0054|consen 349 AVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNS 428 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333333333333333334444455678999999999999999999999886654432222 2 222222
Q ss_pred HHHHH-HHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCC
Q 000553 1122 SLWLS-LRLQ--------------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQ 1180 (1428)
Q Consensus 1122 ~~wl~-~~l~--------------------~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~ 1180 (1428)
..|.. -.+- +-.++++.-.+...+..+-.....+-+..+|++|+.+|+..++.+.....
T Consensus 429 ~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~ 508 (1381)
T KOG0054|consen 429 FLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVE 508 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccc
Confidence 22321 1111 01112222222233444445555666778999999999976543321111
Q ss_pred CCCCCCCCCccEEEEEEEEEECCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC
Q 000553 1181 SLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1259 (1428)
Q Consensus 1181 ~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~ 1259 (1428)
. .+.-+.+..|+++|.+|++.++ .++.|+||||+|++||.+||||++|||||||+++|+|.++..+|++.++|.
T Consensus 509 ~-~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs---- 583 (1381)
T KOG0054|consen 509 R-SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS---- 583 (1381)
T ss_pred c-CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----
Confidence 1 1222345579999999999863 445999999999999999999999999999999999999999999999883
Q ss_pred CChHhHhcceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHH
Q 000553 1260 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICL 1337 (1428)
Q Consensus 1260 i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~L 1337 (1428)
++||||.|++|+|||||||.++.+++++...++++.|+|.+.++.+ |-.|+|||+|.|||||||||++|
T Consensus 584 ---------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsL 654 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISL 654 (1381)
T ss_pred ---------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHccCCCEEEEeccccCCCHHHHHH-HHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1338 ARALLKSSKVLCLDECTANVDAQTASI-LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1338 ARALL~~~~ILlLDEaTS~lD~~te~~-Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
|||++++++|.+||+|-|+||.++.+. +++.|+...+++|+|.|||.++.+..+|+|+||++|+|+|.|+|+||++. +
T Consensus 655 ARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~ 733 (1381)
T KOG0054|consen 655 ARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-G 733 (1381)
T ss_pred HHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-c
Confidence 999999999999999999999999765 56778878899999999999999999999999999999999999999974 5
Q ss_pred cHHHHHHHh
Q 000553 1417 SVFSSFVRA 1425 (1428)
Q Consensus 1417 s~f~~l~~~ 1425 (1428)
+.|.++.++
T Consensus 734 ~~~~~l~~~ 742 (1381)
T KOG0054|consen 734 GDFAELAHE 742 (1381)
T ss_pred hhHHHHhhc
Confidence 688887544
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=579.24 Aligned_cols=483 Identities=18% Similarity=0.214 Sum_probs=358.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 000553 339 YSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQV 417 (1428)
Q Consensus 339 ~~~~~~~~~~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~lL~~~l 417 (1428)
..+...+.+.+.-..+...++++.++.+...+...+.|+++|.++.|++.+..... .+..+....+.+++.+.++....
T Consensus 945 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~ 1024 (1490)
T TIGR01271 945 RGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQ 1024 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777888889999999999998889999999999999999987544 34555555555555554444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000553 418 KFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTR 497 (1428)
Q Consensus 418 g~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~ 497 (1428)
++.+++.++++++++.+..+..+..+..++.....++...+...|.++|+.+||.||+|+.+.++..+.-+...+.....
T Consensus 1025 p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1104 (1490)
T TIGR01271 1025 PYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLY 1104 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444445555555566667777888899999999999999999999999888776544322221111
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 000553 498 KYLDAWCVFFWAT-TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 576 (1428)
Q Consensus 498 ~~~~~~~~~~~~~-~~~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~ 576 (1428)
.....+....... ...++..+.+ ..+.....+++.+-.++++...+..++..+...+..+..+.+|.+||.+|++.+
T Consensus 1105 ~~~~~wl~~~~~~i~~~~~~~~~~--l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~ 1182 (1490)
T TIGR01271 1105 LSTLRWFQMRIDIIFVFFFIAVTF--IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLP 1182 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111121111111 1011111111 111112345666666677777888899988889999999999999999999765
Q ss_pred CCchhhhhhcCCC--C---cccCCCc-cCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcH
Q 000553 577 EYKHELEQAANSP--S---YISNGLS-NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGK 650 (1428)
Q Consensus 577 e~~~~~~~~~~~~--~---~~~~~~~-~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGK 650 (1428)
+..+......... . ....... ..-+..+.|+++|++|+|+++. +++|+|+||+|++||.++|||++||||
T Consensus 1183 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~----~~vL~~is~~I~~GekvaIvGrSGsGK 1258 (1490)
T TIGR01271 1183 QEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAG----RAVLQDLSFSVEGGQRVGLLGRTGSGK 1258 (1490)
T ss_pred CccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCC----cceeeccEEEEcCCCEEEEECCCCCCH
Confidence 4322100000000 0 0000000 0002346799999999997532 245999999999999999999999999
Q ss_pred HHHHHHHHcCccCCCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHh
Q 000553 651 SSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717 (1428)
Q Consensus 651 Stll~~llG~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~ 717 (1428)
|||+++|+|.++ .+|+|.++| +|+|+||+|.+|+|||||||....++++++..++++.|+|.+.+.
T Consensus 1259 STLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~ 1337 (1490)
T TIGR01271 1259 STLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIE 1337 (1490)
T ss_pred HHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHH
Confidence 999999999997 799999987 599999999999999999998767788999999999999999999
Q ss_pred cccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchh
Q 000553 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 797 (1428)
Q Consensus 718 ~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l 797 (1428)
.+|+|.+|.|||+|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+. +.. ..+++|+|+||||++.+
T Consensus 1338 ~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~-L~~-~~~~~TvI~IaHRl~ti 1415 (1490)
T TIGR01271 1338 QFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT-LKQ-SFSNCTVILSEHRVEAL 1415 (1490)
T ss_pred hCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988876 443 45789999999999999
Q ss_pred hcCCEEEEEeCCeEEEecChHHHHhccccCccc
Q 000553 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSGFWS 830 (1428)
Q Consensus 798 ~~ad~i~~l~~G~i~~~g~~~el~~~~~~~~~~ 830 (1428)
..+|+|++|++|+|++.|+++++.+..+.+.++
T Consensus 1416 ~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l 1448 (1490)
T TIGR01271 1416 LECQQFLVIEGSSVKQYDSIQKLLNETSLFKQA 1448 (1490)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHH
Confidence 999999999999999999999998755444443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=526.96 Aligned_cols=508 Identities=17% Similarity=0.154 Sum_probs=361.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAG-PLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1428)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1428)
+++.+++.+++.++...++.++..++.++. |++.+.+++.+.. .....+.+++.+++. .++.....+...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT--SLLVLPEFLGLLLLL----MAVTLGSQLALTTLG 76 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 566778888888888888888888888874 7787888876532 111111111111111 223334555666778
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000553 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 427 (1428)
Q Consensus 348 ~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~v 427 (1428)
.++...+...+|+|.++++...+.+.+.|+++|.++.|++.+......+..++...+.+++++++++..-...+++.+++
T Consensus 77 ~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 77 HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888899999999999999888888999999999999999988665666677777776666655544333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYG--WEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 505 (1428)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g--~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 505 (1428)
+++.+.+..++.++..+..++.++..+++.+.+.|.++|++++++.+ .++.+.++..+..++-.+...+.........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 44445566777888888888999999999999999999999997433 2234444444432221111112111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhh
Q 000553 506 FFWATTPTLFSLFTFGLFALMGH---QLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582 (1428)
Q Consensus 506 ~~~~~~~~~~~~~~f~~y~~~~~---~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 582 (1428)
.+.. +...+.++.+.+.++ ..+.+.+.....+...+..|+..+...++.+.++..+++||.+++..++..+..
T Consensus 237 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 237 NWSN----IMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHH----HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1111 111111222222221 122222222222233467899999999999999999999999998654321100
Q ss_pred hhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc
Q 000553 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~ 662 (1428)
. ..+ .+....++++|++|+|+.+ + ++|+|+||++++|+.++|+||||||||||+++|+|+++
T Consensus 313 -~--~~~----------~~~~~~i~~~~v~f~y~~~--~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 313 -R--PQA----------FPDWQTLELRNVTFAYQDN--G---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred -c--ccc----------cCcCceEEEEEEEEEeCCC--C---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 0 000 0112469999999999732 2 35999999999999999999999999999999999999
Q ss_pred CCCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccC
Q 000553 663 LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729 (1428)
Q Consensus 663 ~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~ 729 (1428)
|++|+|.++| +++|++|+|++|++|++|| +...+++...++++.+++..++.. ++|. .
T Consensus 375 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~ 445 (547)
T PRK10522 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----I 445 (547)
T ss_pred CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----C
Confidence 9999999876 5999999999999999999 456677788888888888776652 3331 2
Q ss_pred CCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhcCCEEEEEeC
Q 000553 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDK 808 (1428)
Q Consensus 730 ~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~ 808 (1428)
+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+ .... .+++|+|+|||+++.+..||+|++|++
T Consensus 446 ~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l-~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 524 (547)
T PRK10522 446 SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL-LPLLQEMGKTIFAISHDDHYFIHADRLLEMRN 524 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHhCCCEEEEEEechHHHHhCCEEEEEEC
Confidence 47899999999999999999999999999999999999999888763 2212 247899999999999999999999999
Q ss_pred CeEEEe
Q 000553 809 GQVKWI 814 (1428)
Q Consensus 809 G~i~~~ 814 (1428)
|++++.
T Consensus 525 G~i~e~ 530 (547)
T PRK10522 525 GQLSEL 530 (547)
T ss_pred CEEEEe
Confidence 999875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=512.04 Aligned_cols=442 Identities=25% Similarity=0.349 Sum_probs=334.3
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|++-+|+. ..+|+|+||++.+||+++++|.||+|||||+|.|.|.++|++|+|.++|
T Consensus 7 ~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 7 PLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHH
Confidence 46789999888863 3569999999999999999999999999999999999999999999987
Q ss_pred ---cEEEEcCCCCCC-cccHHHHHhcCCCC-------ChHHH----HHHHHHhcchHHHhcccCCCcccccCCCCccchH
Q 000553 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNY-------DPQSY----SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~-~~ti~~nI~~g~~~-------~~~~~----~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGG 737 (1428)
.|+.+.|++-|+ +-||.|||.+|++. |..+. +++++..++..| ......+||+|
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-----------~~~~v~~Lsia 149 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-----------PDTLVGDLSIA 149 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-----------hhhhhhhCCHH
Confidence 499999999876 45999999888653 32322 233333333211 23344589999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecC
Q 000553 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 738 QkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 816 (1428)
|||-|+||||++.+++|+|||||||+|+.+..+++|+. +.....+|.++|+|||+++.+.. ||+|.||+||+.+..++
T Consensus 150 qrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~-ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 150 QRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999999999999986 44435678899999999998765 99999999999875432
Q ss_pred h-HHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHhh
Q 000553 817 S-ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKF 895 (1428)
Q Consensus 817 ~-~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~ 895 (1428)
. .++. .++.. .
T Consensus 229 ~~~~~~------------------------------------------------~~~lv----------~---------- 240 (500)
T COG1129 229 TAAETS------------------------------------------------EDELV----------R---------- 240 (500)
T ss_pred cccCCC------------------------------------------------HHHHH----------H----------
Confidence 1 1100 00000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 896 SGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 975 (1428)
Q Consensus 896 ~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh 975 (1428)
+.
T Consensus 241 -----------------------------~M------------------------------------------------- 242 (500)
T COG1129 241 -----------------------------LM------------------------------------------------- 242 (500)
T ss_pred -----------------------------Hh-------------------------------------------------
Confidence 00
Q ss_pred HHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000553 976 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKL 1055 (1428)
Q Consensus 976 ~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i 1055 (1428)
.|
T Consensus 243 -------------------vG----------------------------------------------------------- 244 (500)
T COG1129 243 -------------------VG----------------------------------------------------------- 244 (500)
T ss_pred -------------------hC-----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1056 QFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLAL 1135 (1428)
Q Consensus 1056 ~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl~l 1135 (1428)
|++
T Consensus 245 --------r~~--------------------------------------------------------------------- 247 (500)
T COG1129 245 --------REL--------------------------------------------------------------------- 247 (500)
T ss_pred --------cch---------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEE
Q 000553 1136 SYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFT 1215 (1428)
Q Consensus 1136 ~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~ 1215 (1428)
.+..++. +..-+....++++|++.. ..++|+||+
T Consensus 248 ---------------------------------~~~~~~~-------~~~~~~~~~l~v~~l~~~------~~~~dvSf~ 281 (500)
T COG1129 248 ---------------------------------EDLFPEP-------PEEGIGEPVLEVRNLSGG------GKVRDVSFT 281 (500)
T ss_pred ---------------------------------hhhcccc-------cccCCCCcEEEEecCCCC------CceeCceeE
Confidence 0000000 000011224677777642 258999999
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC-hHhHhcceEEEeCCcc---cc-CCcHHHhcCcC
Q 000553 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLRGRFAVVPQSPF---LF-EGSLRDNLDPF 1290 (1428)
Q Consensus 1216 I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~-~~~lR~~i~~VpQdp~---lf-~gTIR~NLdp~ 1290 (1428)
+++||.+||.|--|||+|-++.+|+|.-++.+|+|.+||.++.--+ .+..+..|+|||-|-- +| ..+|++|+...
T Consensus 282 vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~ 361 (500)
T COG1129 282 VRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLA 361 (500)
T ss_pred EeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehH
Confidence 9999999999999999999999999999999999999999886554 5688899999999873 44 55999998643
Q ss_pred C--CCChH-HHHHHHHHccHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHH
Q 000553 1291 H--MNDDL-KIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366 (1428)
Q Consensus 1291 ~--~~~d~-ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq 1366 (1428)
. .++.. -+...-++.-..++++.++..+. ....-.+||||.+|+++|||.|..+|+||||||||.++|..+.+.|.
T Consensus 362 ~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy 441 (500)
T COG1129 362 SLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIY 441 (500)
T ss_pred hhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHH
Confidence 1 11100 12233344445566666633321 11223479999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCcEEEEeccChhhhh-hcCEEEEEeCCeEEEecChhH
Q 000553 1367 NAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1367 ~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~g~p~e 1410 (1428)
+.|++.. +|.+||+|+-.+..+. .||||+||.+|+++..=+.++
T Consensus 442 ~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 442 RLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999875 6899999999999988 599999999999997544443
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=540.30 Aligned_cols=484 Identities=15% Similarity=0.128 Sum_probs=365.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 900 ITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYS---TSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 976 (1428)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~---~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~ 976 (1428)
.+++.+++.++...+....+++.+...+.....+.... ...++.+++++.++..+..++...+......+..+++|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666677777766654321111000 112233334444455555556666667778888899999
Q ss_pred HHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHH
Q 000553 977 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSY-VQVFFLLLLVPFWFIYSKL 1055 (1428)
Q Consensus 977 ~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~p~~~~~~~i 1055 (1428)
+.+++....++.|||. ++|++.+|+++|++.+.+.+...+..++..++.+++.++.+.. ..|.+.++++.+.++...+
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999999999997 8899999999999999999999999999888888877766664 5565555444444444555
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 000553 1056 QFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLR------- 1128 (1428)
Q Consensus 1056 ~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~------- 1128 (1428)
.+++.+..+.+.+......+.+.+.+.|.++|+++||+|+.|+.+.+++.+..++..+..........++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5556665566666666677788899999999999999999999988888777766655544332222111111
Q ss_pred --------------HH----------HHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccc
Q 000553 1129 --------------LQ----------VGL----ALSY---AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC 1177 (1428)
Q Consensus 1129 --------------l~----------~gl----~l~~---~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~ 1177 (1428)
+. .|. .+.| ...+...+..+...+.++....++.+|+.++.+.++|...
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 011 1111 2334556677788888999999999999999976443210
Q ss_pred c-------CC-C--------C------CCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHH
Q 000553 1178 G-------YQ-S--------L------SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI 1235 (1428)
Q Consensus 1178 ~-------~~-~--------~------~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL 1235 (1428)
. .. . + .......+.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0 00 0 0 0001134679999999999643 469999999999999999999999999999
Q ss_pred HHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcC--------CCCChHHHHHHHHHccH
Q 000553 1236 LNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF--------HMNDDLKIWSVLEKCHV 1307 (1428)
Q Consensus 1236 ~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~--------~~~~d~ei~~aL~~~~l 1307 (1428)
+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+|||+... ...++++++++++.+++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999874 6789999999999999999999753 23467889999999999
Q ss_pred HHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChh
Q 000553 1308 KEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1386 (1428)
Q Consensus 1308 ~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ 1386 (1428)
.++++.- |+|+..+ .+.+||||||||++||||++++|++||||||||+||+++++.+++.+++. ++|+|+||||++
T Consensus 564 ~~~~~~~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~ 640 (659)
T TIGR00954 564 THILEREGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKS 640 (659)
T ss_pred HHHHhhcCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchH
Confidence 9988766 9999876 45699999999999999999999999999999999999999999999874 899999999999
Q ss_pred hhhhcCEEEEEeC
Q 000553 1387 TVLNMDEILILDH 1399 (1428)
Q Consensus 1387 ti~~~DrI~Vl~~ 1399 (1428)
++..||+|++|+.
T Consensus 641 ~~~~~d~il~l~~ 653 (659)
T TIGR00954 641 LWKYHEYLLYMDG 653 (659)
T ss_pred HHHhCCEEEEEeC
Confidence 9999999999973
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-52 Score=478.19 Aligned_cols=446 Identities=26% Similarity=0.374 Sum_probs=343.0
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..+++++.+-.|+. ..+++||||++++||++++.|+||+|||||++.|.|.++|++|+|.++|
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 46788998888762 3469999999999999999999999999999999999999999999988
Q ss_pred ---cEEEEcCCCCCCcc-cHHHHHhcCCCC------C----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHH
Q 000553 673 ---SIAYVPQVPWILSG-TIRDNILFGKNY------D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~------~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQ 738 (1428)
.||+|.|++-|+.. ||.|||..|.+- | .++.++..+.++|+-|.+ ++...||=|+
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~ 145 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGE 145 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcch
Confidence 49999999998865 999999999753 2 345566667777766543 3445899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecCh
Q 000553 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 817 (1428)
Q Consensus 739 kqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~ 817 (1428)
||||.|-+|||++|++||||||||.|-|...+++|+. +......|+|||+|||+++.+.. ||++-||+.|+++..-
T Consensus 146 qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~-l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~-- 222 (501)
T COG3845 146 QQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV-- 222 (501)
T ss_pred hHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee--
Confidence 9999999999999999999999999999999999987 33325578999999999998765 9999999999975321
Q ss_pred HHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCchhhHHHHHHHHhcCcchHHHHHHHHhhhh
Q 000553 818 ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897 (1428)
Q Consensus 818 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 897 (1428)
+... + . ..+++. +--.|
T Consensus 223 ~~~~-----------~---------------------------~-------t~~ela---~lMvG--------------- 239 (501)
T COG3845 223 DPVA-----------E---------------------------T-------TEEELA---ELMVG--------------- 239 (501)
T ss_pred cCCC-----------C---------------------------C-------CHHHHH---HHhcC---------------
Confidence 1000 0 0 000000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 977 (1428)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ 977 (1428)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1057 (1428)
Q Consensus 978 ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~ 1057 (1428)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1058 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGLALSY 1137 (1428)
Q Consensus 1058 ~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~gl~l~~ 1137 (1428)
+++
T Consensus 240 ------~~v----------------------------------------------------------------------- 242 (501)
T COG3845 240 ------REV----------------------------------------------------------------------- 242 (501)
T ss_pred ------Ccc-----------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEe
Q 000553 1138 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIE 1217 (1428)
Q Consensus 1138 ~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~ 1217 (1428)
..+.+ .++.-|..-.++++|++..-+.+ -+.+++|||+|+
T Consensus 243 --------------------------------~~~~~-------~~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr 282 (501)
T COG3845 243 --------------------------------VLRVV-------KPPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVR 282 (501)
T ss_pred --------------------------------ccccc-------cCCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEe
Confidence 00000 01111334478999999865433 368999999999
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeC-CCCChHhHh-cceEEEeCCcc----ccCCcHHHhcCcCC
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLR-GRFAVVPQSPF----LFEGSLRDNLDPFH 1291 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di-~~i~~~~lR-~~i~~VpQdp~----lf~gTIR~NLdp~~ 1291 (1428)
+||.+||.|-.|-|-+-|+.+|.|+.+|.+|+|.++|.|+ ...+....| ..+++||.|.+ ..+-|+.||+-+..
T Consensus 283 ~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~ 362 (501)
T COG3845 283 AGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGR 362 (501)
T ss_pred cCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhh
Confidence 9999999999999999999999999999999999999997 566776665 46999999984 45679999985432
Q ss_pred CCCh-----H-HHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHH
Q 000553 1292 MNDD-----L-KIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364 (1428)
Q Consensus 1292 ~~~d-----~-ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~ 1364 (1428)
...+ - -=|+++++ ...+.++..+..+ .-.....+||||++|++-+||-|.++|++||..+||-+||..+.+.
T Consensus 363 ~~~~~~~~~g~l~~~~i~~-~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~ 441 (501)
T COG3845 363 HDKKPFSRGGFLDRRAIRK-FARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEF 441 (501)
T ss_pred ccccccccccccCHHHHHH-HHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHH
Confidence 2111 0 00222222 1234455442221 1112234799999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhH
Q 000553 1365 LQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1365 Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~e 1410 (1428)
|++.|.+.. +|+.|+.|+-+|+.+.. ||||.||.+|+++...+|++
T Consensus 442 I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 442 IHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 999887764 69999999999999886 89999999999998887776
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=508.29 Aligned_cols=515 Identities=16% Similarity=0.182 Sum_probs=376.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 280 PYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYV-LAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII 358 (1428)
Q Consensus 280 ~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~I 358 (1428)
.++..+++.++.+++....|.+.+.+++.+.+.+. ..+. .++.++++.++.+++.....|...++..++|..+...+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~--~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l 174 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP--RNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYL 174 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888889999999999999998764322 1111 11122223333444444455556666677777777777
Q ss_pred HHHHhcC----CccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH
Q 000553 359 YQKCLYV----RLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAF-VSGLAITILLI 432 (1428)
Q Consensus 359 y~K~L~l----~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~lL~~~lg~a~-l~g~~v~~~~~ 432 (1428)
+++.++. +...+++ ..|++.+.+++|++.+.+... .+..+...++.++.+++.|+..++|.. ++.++.+++.+
T Consensus 175 ~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~ 253 (659)
T TIGR00954 175 YSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATG 253 (659)
T ss_pred HHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 6666654 2222232 579999999999999988654 456666777777777777776666644 33334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 512 (1428)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 512 (1428)
.+..++.+++.+..++..+..++-.+..+|.++|++.||+|+.|+.+.+++.+.-++-.+...+.....+....+.....
T Consensus 254 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 333 (659)
T TIGR00954 254 VVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVA 333 (659)
T ss_pred HHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66677888888899999999999999999999999999999999998888877655555555555555554444433222
Q ss_pred ----HHHHHHHHHHHHHh-C----CCCcHhHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 000553 513 ----TLFSLFTFGLFALM-G----HQLDAAMVFT-C---LALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 579 (1428)
Q Consensus 513 ----~~~~~~~f~~y~~~-~----~~Lt~~~~ft-~---l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 579 (1428)
..+..+..+...+. . +.+|.+..+. . ..++..+..|+..+...+..+.++.++.+||.++++.++..
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~ 413 (659)
T TIGR00954 334 KYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDV 413 (659)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222332222 2 5688876544 2 33467789999999999999999999999999999653211
Q ss_pred hhhh-hhcCCCC--c---------ccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCC
Q 000553 580 HELE-QAANSPS--Y---------ISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVG 647 (1428)
Q Consensus 580 ~~~~-~~~~~~~--~---------~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~G 647 (1428)
+... .....+. . ...+..........++++|++|.|+.+ +.+|+|+||++++||.++|+||||
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-----~~il~~isl~i~~Ge~~~IvG~nG 488 (659)
T TIGR00954 414 KSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-----DVLIESLSFEVPSGNHLLICGPNG 488 (659)
T ss_pred hcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-----CeeeecceEEECCCCEEEEECCCC
Confidence 1000 0000000 0 000000011123469999999998632 235999999999999999999999
Q ss_pred CcHHHHHHHHHcCccCCCeEEEEcC--cEEEEcCCCCCCcccHHHHHhcCC--------CCChHHHHHHHHHhcchHHHh
Q 000553 648 SGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWILSGTIRDNILFGK--------NYDPQSYSETLKACTLDVDIS 717 (1428)
Q Consensus 648 sGKStll~~llG~~~~~~G~i~~~~--~i~y~~Q~p~l~~~ti~~nI~~g~--------~~~~~~~~~v~~~c~l~~di~ 717 (1428)
||||||+++|+|+++|++|+|.+++ +++||+|+|+++++|++|||.++. ..++++..++++.+++++.++
T Consensus 489 sGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 568 (659)
T TIGR00954 489 CGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILE 568 (659)
T ss_pred CCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHh
Confidence 9999999999999999999998864 699999999999999999999874 245667788999999988777
Q ss_pred cccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchh
Q 000553 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 797 (1428)
Q Consensus 718 ~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l 797 (1428)
. |.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+ .. .++|+|+|||+++.+
T Consensus 569 ~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l-~~---~~~tvI~isH~~~~~ 642 (659)
T TIGR00954 569 R-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC-RE---FGITLFSVSHRKSLW 642 (659)
T ss_pred h-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HH---cCCEEEEEeCchHHH
Confidence 6 899999876 56799999999999999999999999999999999999999988763 22 378999999999999
Q ss_pred hcCCEEEEEeC
Q 000553 798 SAADMVVVMDK 808 (1428)
Q Consensus 798 ~~ad~i~~l~~ 808 (1428)
+.||++++|+.
T Consensus 643 ~~~d~il~l~~ 653 (659)
T TIGR00954 643 KYHEYLLYMDG 653 (659)
T ss_pred HhCCEEEEEeC
Confidence 99999999973
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=478.36 Aligned_cols=236 Identities=34% Similarity=0.623 Sum_probs=225.8
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.|||+|+.+++...+|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997666679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1270 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1270 ~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||||+|.+|++|+++|+++++..++++++++++.+++.+.+..+ +|++.++++|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999988777889999999999999999887 899999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHhhC
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~~~ 1427 (1428)
|||||||++||+++++.+++.|++.++++|||+||||++++..||||+||++|+++|.|+|++|++++ +.|++++++++
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK-SHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCc-HHHHHHHhhcc
Confidence 99999999999999999999999888899999999999999999999999999999999999999964 79999998765
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=448.38 Aligned_cols=464 Identities=20% Similarity=0.257 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000553 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLYTQVKFAFVSGLA 426 (1428)
Q Consensus 348 ~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~ 426 (1428)
....-.+.-..|.|++.|+.....+..+|.+..-+.--.+-|....++ +..+....++++++..++++..||......+
T Consensus 11 q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~ 90 (497)
T COG5265 11 QIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTL 90 (497)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 333445566778888888876655556666655444444445544443 3344456688999999999999987766555
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 427 ITILLIPVNKWI-ANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 505 (1428)
Q Consensus 427 v~~~~~~~~~~~-~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 505 (1428)
+.++++.+-.+. ...-...+++.+++-.+......+.|-+-.++|.||-|+.+..+.....+.--+...|......+.+
T Consensus 91 vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln 170 (497)
T COG5265 91 VTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLN 170 (497)
T ss_pred HHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 555544332222 2222334444444444556677899999999999999998887766554332222222221111211
Q ss_pred HHHHH--HHHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhh
Q 000553 506 FFWAT--TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1428)
Q Consensus 506 ~~~~~--~~~~~~~~~f~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 583 (1428)
+.... ...+....+.+...+..+.+|.+...-.-++...+..|++.+......+-+++.-.++..+.+..+-......
T Consensus 171 ~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~p 250 (497)
T COG5265 171 FGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAP 250 (497)
T ss_pred HhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCC
Confidence 11110 0111122333344456788999999999999999999999999999999999999999988876542211110
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC
Q 000553 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~ 663 (1428)
. .|.. .....+.|.|++++|.|.++ +++|+++||++++|+.++|||++|+||||+++.|.+++++
T Consensus 251 d---a~~L-------~~~~~g~v~F~~V~F~y~~~-----r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~ 315 (497)
T COG5265 251 D---APPL-------WPVRLGAVAFINVSFAYDPR-----RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV 315 (497)
T ss_pred C---Cccc-------cccccceEEEEEEEeecccc-----chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 0 1110 00234679999999999754 3459999999999999999999999999999999999999
Q ss_pred CCeEEEEcC-------------cEEEEcCCCCCCcccHHHHHhcCCCC-ChHHHHHHHHHhcchHHHhcccCCCcccccC
Q 000553 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 729 (1428)
Q Consensus 664 ~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~ 729 (1428)
.+|.|.++| .||.|||+..|||+|+..||.+|++. .++...++.++.++...|+.+|+|++|.|||
T Consensus 316 ~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vge 395 (497)
T COG5265 316 NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE 395 (497)
T ss_pred cCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccch
Confidence 999999987 39999999999999999999999874 5677788999999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCC
Q 000553 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 809 (1428)
Q Consensus 730 ~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G 809 (1428)
+|-.||||+|||||+||++.++|+|++|||.|||||.+|++.|... +.. ..+|+|.+++.||++.+-.||+|+||++|
T Consensus 396 rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~-l~~-~~~~rttlviahrlsti~~adeiivl~~g 473 (497)
T COG5265 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA-LRE-VSAGRTTLVIAHRLSTIIDADEIIVLDNG 473 (497)
T ss_pred heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHH-HHH-HhCCCeEEEEeehhhhccCCceEEEeeCC
Confidence 9999999999999999999999999999999999999999988776 443 56889999999999999999999999999
Q ss_pred eEEEecChHHHHhccccCc
Q 000553 810 QVKWIGSSADLAVSLYSGF 828 (1428)
Q Consensus 810 ~i~~~g~~~el~~~~~~~~ 828 (1428)
+|+|.|+|+||+..++.+.
T Consensus 474 ~i~erg~h~~ll~~~g~ya 492 (497)
T COG5265 474 RIVERGTHEELLAAGGLYA 492 (497)
T ss_pred EEEecCcHHHHHHcCChHH
Confidence 9999999999998876554
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=461.01 Aligned_cols=255 Identities=25% Similarity=0.390 Sum_probs=216.9
Q ss_pred HHHHHHHHHHhhhcCCccccc-------c-C---CCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEE
Q 000553 1157 KEMVSLERVLEYMDVPQEELC-------G-Y---QSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIV 1225 (1428)
Q Consensus 1157 ~~~~sveRi~~~~~~~~e~~~-------~-~---~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIv 1225 (1428)
..+.+++|+.+|...+.|... . . ...+..||..|.|+|+|++++|+++.+++|+|+||+|++||++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 345667777777665544311 0 0 0113469999999999999999765567999999999999999999
Q ss_pred CCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCC--CCChHhHhcceEEEeCCccccCCcHHHhcCcC---CCCCh
Q 000553 1226 GRTGAGKSSILNALFRLTP-----ICGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDD 1295 (1428)
Q Consensus 1226 GrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~--~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~---~~~~d 1295 (1428)
||||||||||+++|+|+++ |++|+|.|||+|+. ++++..+|++++||||+|.+|++|+++|+++. ...++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 45667899999999999999999999999842 23445
Q ss_pred HHH-----HHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHH
Q 000553 1296 LKI-----WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370 (1428)
Q Consensus 1296 ~ei-----~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~ 1370 (1428)
++. .++++.+++++ ++++.+++.|.+||||||||+|||||++++|+||||||||++||+++.+.+++.|+
T Consensus 195 ~~~~~~~~~~~l~~~~L~~-----~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~ 269 (329)
T PRK14257 195 RKILEKIVEKSLKSAALWD-----EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELIL 269 (329)
T ss_pred HHHHHHHHHHHHHHcCCcc-----hhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 544 34455555433 45678899999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1371 SECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1371 ~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
+.++++|+|+|||+++++.+ ||||+||++|+|+|.|+|+++..++.
T Consensus 270 ~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~ 316 (329)
T PRK14257 270 ELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPK 316 (329)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 98889999999999999998 99999999999999999999998765
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=386.61 Aligned_cols=220 Identities=28% Similarity=0.439 Sum_probs=191.0
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC-CCChHhHhcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~-~i~~~~lR~~i 1269 (1428)
.|+++||+.+|+.. .||||||++|++||++.||||||||||||+++|.++-+|++|+|.|||.++. ..++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999754 6999999999999999999999999999999999999999999999998774 33789999999
Q ss_pred EEEeCCccccCC-cHHHhcCcCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
|+|+|+..||+- |+-||+.... ..+.+|-. ++ ..+.++..||.......+..||||||||++|||||..+
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~---~~--A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR---EK--ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHH---HH--HHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 999999999986 9999985431 12222211 11 12334444676677777889999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCc
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1417 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s 1417 (1428)
|+|+++|||||+|||+.-..+.+++++.. .|.|.|+|||.+...++ +|||+.||+|+++|.|+|+++..++..
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~ 229 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKS 229 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCC
Confidence 99999999999999999999999998875 58899999999999998 699999999999999999999998764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=402.27 Aligned_cols=220 Identities=29% Similarity=0.444 Sum_probs=192.0
Q ss_pred EEEEEEEEEECCC---CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC---hHhH
Q 000553 1192 IEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDL 1265 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~---~~~l 1265 (1428)
|+++||++.|+.. ...+|+||||+|++||..||+|+||||||||++++-++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999863 346999999999999999999999999999999999999999999999999987765 5667
Q ss_pred hcceEEEeCCccccC-CcHHHhcCcC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1266 RGRFAVVPQSPFLFE-GSLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1266 R~~i~~VpQdp~lf~-gTIR~NLdp~---~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
|++||+|+|++-|++ -||.+|+.+- ...+.+|+.+ ...+.++-.||....+..+.+||||||||++|||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~-----RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ-----RVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHH-----HHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 889999999999998 6999999642 1234444432 122333334888888888899999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
..+|+||+.|||||+|||+|.+.|.+.|++.- -|-|+++|||-++.+++ ||||.||++|+|+|.|+-.++..++.
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK 234 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc
Confidence 99999999999999999999999999987753 38999999999999998 99999999999999999999999885
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=417.17 Aligned_cols=196 Identities=23% Similarity=0.309 Sum_probs=157.2
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|.|+||+|+|.++. ..+++++|-|.++++|++|||||+|||||++++.+.+.|..|.|.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 699999999998664 8999999999999999999999999999999999999999999864321 1233
Q ss_pred EEeCCc---cccCCcHHHhcCcC-C-CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1271 VVPQSP---FLFEGSLRDNLDPF-H-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1271 ~VpQdp---~lf~gTIR~NLdp~-~-~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
.--|.- .-++-|.-+|+.|- . ....+++...|.++||.... .+.++ .+||+|||.|+++||++++.|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~----q~~p~----~~LS~Gqr~rVlFa~l~~kqP 528 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDA----QVVPM----SQLSDGQRRRVLFARLAVKQP 528 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccc----cccch----hhcccccchhHHHHHHHhcCC
Confidence 334432 34566777776442 2 24456777788888765321 12222 379999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEe-cCh
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQ-GNP 1408 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~-g~p 1408 (1428)
.||+|||||++||.+|-....++|.+. ..+||+|+|+...|.. +++|++.++|.+... |..
T Consensus 529 ~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 529 HLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999764 4589999999999988 699999999998764 443
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=407.78 Aligned_cols=238 Identities=44% Similarity=0.744 Sum_probs=221.6
Q ss_pred CCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhc
Q 000553 1188 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267 (1428)
Q Consensus 1188 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~ 1267 (1428)
..|.|+++|++++|+.....+|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999754456999999999999999999999999999999999999999999999999999999889999
Q ss_pred ceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1268 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1268 ~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
+++++||+|.+|++|+++|+++.....+++++++++..++.+.++.+ |+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876544556788899999999988888 9999999999999999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~ 1425 (1428)
++|||||||++||+++.+.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++.+.+++.|+.++..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999988777899999999999999999999999999999999999998878889998764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=376.33 Aligned_cols=220 Identities=30% Similarity=0.430 Sum_probs=200.2
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC-----ceEEECCeeCCC--CCh
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIIN--TPV 1262 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~-----G~I~IDG~di~~--i~~ 1262 (1428)
..++++|+++.|.. ..+|+|||++|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999974 469999999999999999999999999999999999999876 999999999965 678
Q ss_pred HhHhcceEEEeCCccccCCcHHHhcCcCCC----C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~----~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
-.||+++|+|.|.|.-|+.||+||+.++-. . -|+-+.++|++++||+.+.. .+.+.+..|||||+|||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-----rL~~sa~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-----RLHKSALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-----HhhCCccCCChhHHHHH
Confidence 999999999999999999999999976521 1 24557889999999998863 45667778999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
||||||.-+|+||+||||||+||+-+...|.+.|.+..++.||++|||.+.-... +|+...+-.|+++|+|+-+++..+
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 9999999999999999999999999999999999999999999999999998776 699999999999999999999987
Q ss_pred CC
Q 000553 1415 EC 1416 (1428)
Q Consensus 1415 ~~ 1416 (1428)
+.
T Consensus 239 P~ 240 (253)
T COG1117 239 PK 240 (253)
T ss_pred cc
Confidence 74
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=395.01 Aligned_cols=232 Identities=35% Similarity=0.569 Sum_probs=211.9
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+.+.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544579999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeCCccccCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000553 1272 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348 (1428)
Q Consensus 1272 VpQdp~lf~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~IL 1348 (1428)
+||++.+|+.|+++|+..... .+.+++.++++..++.+.++.+ |+++..+..+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999999999999976432 3455677778888888888887 8888888888999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHH
Q 000553 1349 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424 (1428)
Q Consensus 1349 lLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~ 1424 (1428)
||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|++++++++ .+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999988778999999999999988999999999999999999999986 467887765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=375.81 Aligned_cols=223 Identities=31% Similarity=0.473 Sum_probs=195.1
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+|+||+++|. ...+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 79999999997 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCccccCC-cHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCch--hhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET--FVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt--~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
|=|.--||+- ||.+||..-. ..+.+++.+- ..+.+...|||. .....+..|||||+||+.+||||..+|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 9999999986 9999985322 2344444322 334444448875 455677889999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHH
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSS 1421 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~ 1421 (1428)
+||+||||.++||+-|...+|+-+.+..+ ++|+|+|||+++.... +|||.||++|+++.+|+|+++++++...|-+
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~ 233 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHH
Confidence 99999999999999999999998876543 8999999999998655 8999999999999999999999998766643
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=415.18 Aligned_cols=262 Identities=21% Similarity=0.291 Sum_probs=217.7
Q ss_pred CCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEE
Q 000553 528 HQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVI 607 (1428)
Q Consensus 528 ~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 607 (1428)
+.++++++|+++++++.+..|+..+|..... ..|+++|+..++.+...... . .+.+..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~i~ 82 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--D-----------FNHANVFE 82 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--C-----------CCcCceEE
Confidence 5789999999999999999999887765433 56999998766533210000 0 12345799
Q ss_pred EEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc-----CCCeEEEEc-----------
Q 000553 608 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHAS----------- 671 (1428)
Q Consensus 608 ~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~-----~~~G~i~~~----------- 671 (1428)
++|+++.|.... +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++
T Consensus 83 ~~nls~~y~~~~----~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 83 IRNFNFWYMNRT----KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred EEeeEEEecCCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 999999996421 235999999999999999999999999999999999996 579998764
Q ss_pred ----CcEEEEcCCCCCCcccHHHHHhcCCCCC----hH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHH
Q 000553 672 ----GSIAYVPQVPWILSGTIRDNILFGKNYD----PQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1428)
Q Consensus 672 ----~~i~y~~Q~p~l~~~ti~~nI~~g~~~~----~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQk 739 (1428)
+.++||||+||++++||+|||.|+..++ ++ .|+++++.|+|..+++ +.++++|.+||||||
T Consensus 159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqk 231 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQ 231 (329)
T ss_pred HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHH
Confidence 3599999999999999999999875322 22 3677888998866553 678999999999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChH
Q 000553 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 740 qRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~ 818 (1428)
|||+||||++++|+|+||||||||||+++.+++.+. +.. +.+++|+|+|||+++++.. ||+|++|++|+|++.|+++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~-i~~-l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL-ILE-LKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999986554 554 4567899999999999887 9999999999999999999
Q ss_pred HHHh
Q 000553 819 DLAV 822 (1428)
Q Consensus 819 el~~ 822 (1428)
++..
T Consensus 310 ~l~~ 313 (329)
T PRK14257 310 TIFI 313 (329)
T ss_pred HHhc
Confidence 9864
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=387.87 Aligned_cols=219 Identities=53% Similarity=0.912 Sum_probs=205.6
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
|.++++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975445799999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1270 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1270 ~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+|+||+|.+|++|+++|++++....++++.++++..++.+.+..+ |+++.+++.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999987666777889999999999998876 999999888999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecCh
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p 1408 (1428)
+||||||++||+.+.+.+.+.|++..++.|+|+++|+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=401.53 Aligned_cols=194 Identities=21% Similarity=0.280 Sum_probs=162.3
Q ss_pred CCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhc
Q 000553 1188 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267 (1428)
Q Consensus 1188 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~ 1267 (1428)
....+++.+|+|.|.++.++.+++++++++.-+++++||++|+||||+++++.+-.+|..|.+-+.+ |.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 3457999999999998877899999999999999999999999999999999999999999988765 78
Q ss_pred ceEEEeCCcccc-CCcHHH-----hcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCC-CCCChhHHHHHHHHHH
Q 000553 1268 RFAVVPQSPFLF-EGSLRD-----NLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESG-ISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1268 ~i~~VpQdp~lf-~gTIR~-----NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G-~~LSgGQrQrl~LARA 1340 (1428)
+|++-.|.-+=| +-.+-. -..|+ .+++|+.+.|... |++..+...+ ..||||||-|+++|-.
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG--~~~ee~r~hl~~~---------Gl~g~la~~si~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPG--KTEEEIRRHLGSF---------GLSGELALQSIASLSGGQKSRVAFAAC 496 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCC--CCHHHHHHHHHhc---------CCCchhhhccccccCCcchhHHHHHHH
Confidence 999999977532 222211 11222 3788887776655 5565555444 4699999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEe
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQ 1405 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~ 1405 (1428)
.+.+|.+|||||||..||.++-..+-++|+. |.| -||+|+|+.+.+.. |+.++|.++|+|...
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKN-FNG-GVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHh-cCC-cEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999999999999999976 444 69999999999987 899999999999763
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=378.08 Aligned_cols=207 Identities=46% Similarity=0.864 Sum_probs=187.6
Q ss_pred CCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH
Q 000553 1186 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL 1265 (1428)
Q Consensus 1186 wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l 1265 (1428)
||..+.++++|++++|+....++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543479999999999999999999999999999999999999999999999999988888888
Q ss_pred hcceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1266 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1266 R~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
|++++|+||+|.+|++|+++|+..+...+++++.++++ +++....||+||+||++||||++++|
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998765444444433332 24556789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecCh
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p 1408 (1428)
+|+||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+|
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999987778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=399.63 Aligned_cols=223 Identities=24% Similarity=0.382 Sum_probs=190.7
Q ss_pred CCccEEEEEEEEEECCC---CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----
Q 000553 1188 FQGLIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT---- 1260 (1428)
Q Consensus 1188 ~~g~I~f~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i---- 1260 (1428)
....|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 34469999999999743 23699999999999999999999999999999999999999999999999998653
Q ss_pred ------------ChHhHhcceEEEeCCc--cccCCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCc-hhhhc
Q 000553 1261 ------------PVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKE 1322 (1428)
Q Consensus 1261 ------------~~~~lR~~i~~VpQdp--~lf~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e 1322 (1428)
+...+|+++++|+|+| .+|++||++|+.+... .++++. .++ ..+.++.+|++ ...++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~---~~~--~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEA---KKL--AKFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHH---HHH--HHHHHHHcCCChhHhcC
Confidence 3567899999999998 6899999999965421 223322 222 23456666886 56788
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhh-hcCEEEEEeCC
Q 000553 1323 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHG 1400 (1428)
Q Consensus 1323 ~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G 1400 (1428)
.+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 888999999999999999999999999999999999999999999998753 5899999999999885 59999999999
Q ss_pred eEEEecChhHHhccC
Q 000553 1401 HLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1401 ~ive~g~p~eLl~~~ 1415 (1428)
++++.|+|+++.+++
T Consensus 253 ~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 253 KILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEEeCCHHHHhcCH
Confidence 999999999887643
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=399.99 Aligned_cols=223 Identities=25% Similarity=0.388 Sum_probs=188.6
Q ss_pred EEEEEEEEEECCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh---Hh
Q 000553 1192 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1266 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1266 (1428)
|+++||+++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887554 58
Q ss_pred cceEEEeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1267 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1267 ~~i~~VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
++|++|||++.+|+ .|+++|+.... ..+.+++.+ ...+.++.+||+......+..||||||||++|||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 89999999999996 69999996421 122222221 1223333446655556667789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f 1419 (1428)
.+|+|||||||||+||+++.+.+.+.|++..+ +.|||+|||+++.+.. ||||++|++|+++|.|++++++.++...+
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~ 236 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPL 236 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHH
Confidence 99999999999999999999999999988753 7999999999999976 89999999999999999999987664434
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=382.95 Aligned_cols=230 Identities=34% Similarity=0.582 Sum_probs=208.4
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+....++++|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeCCccccCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000553 1272 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348 (1428)
Q Consensus 1272 VpQdp~lf~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~IL 1348 (1428)
+||+|.+|+.|++||+..+.. .+.+++.+.++..++.+.++.+ |+++.++....+||+|||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999986533 3445666777888888888887 8888888888899999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHH
Q 000553 1349 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1422 (1428)
Q Consensus 1349 lLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l 1422 (1428)
||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|+++++.++. +.|+.+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~~ 233 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG-GVYAKL 233 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC-cchhhh
Confidence 9999999999999999999999887889999999999999999999999999999999999998754 455543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=378.96 Aligned_cols=225 Identities=40% Similarity=0.652 Sum_probs=206.7
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
|.|+++|++++|+. .+++++|+||+|++||++||+|+||||||||+++|.|+++|.+|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 46899999999963 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeCCccccCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1270 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1270 ~~VpQdp~lf~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
+|+||+|.+|++|+++|+..+.. ..++++.++++.+++.+.++.+ |+++.++.....||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999976543 3456777888889999888887 89998888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccC
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
+|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++.++.
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 999999999999999999999998876789999999999999889999999999999999999887653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=379.39 Aligned_cols=232 Identities=37% Similarity=0.639 Sum_probs=211.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 469999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EeCCccccCCcHHHhcCcCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000553 1272 VPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348 (1428)
Q Consensus 1272 VpQdp~lf~gTIR~NLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~IL 1348 (1428)
+||+|.+|++|+++|+.... ..+++++.++++.+++.+.+..+ |+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 34566778888888998888887 8999998888899999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHHHh
Q 000553 1349 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425 (1428)
Q Consensus 1349 lLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~~ 1425 (1428)
||||||++||+++.+.+.+.|++..++.|+|+++|+++.+..||++++|++|++++.|+++++.++ .+.|+.++..
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 999999999999999999999887668899999999999999999999999999999999999875 4677777653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=376.02 Aligned_cols=214 Identities=29% Similarity=0.456 Sum_probs=187.3
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++|++++|+ .+++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.|+.+++..++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999997 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccc-cCCcHHHhcCcCC--------CCC--hH-HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000553 1271 VVPQSPFL-FEGSLRDNLDPFH--------MND--DL-KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1271 ~VpQdp~l-f~gTIR~NLdp~~--------~~~--d~-ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1338 (1428)
||||++.. |.-||+|-+..+. ..+ |+ .+.+||+.+++.++.+ ..-..||||||||+.||
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~---------r~~~~LSGGerQrv~iA 150 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD---------RPVDELSGGERQRVLIA 150 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc---------CcccccChhHHHHHHHH
Confidence 99999754 5559998775332 122 33 4667788887766542 23346999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
|||.++|+||+||||||+||....-.+.+.+++.. ++.|+|+|.|+++.... ||++++|++|+++..|+|+|.+..+
T Consensus 151 rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e 230 (258)
T COG1120 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230 (258)
T ss_pred HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHH
Confidence 99999999999999999999999999999998875 47999999999987765 7999999999999999999998743
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=372.16 Aligned_cols=210 Identities=29% Similarity=0.457 Sum_probs=184.2
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|... +||+||||+|++||.+||+||||||||||+++++|+++|.+|+|.++|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999755 49999999999999999999999999999999999999999999999998765433 57899
Q ss_pred EEeCCc---cccCCcHHHhcCcCCC-----------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000553 1271 VVPQSP---FLFEGSLRDNLDPFHM-----------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1336 (1428)
Q Consensus 1271 ~VpQdp---~lf~gTIR~NLdp~~~-----------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1336 (1428)
||||.. .-|+-||+|-+..+.. .+.+++.+||++++++++. +.+++ .|||||+||+.
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----~r~i~----~LSGGQ~QRV~ 149 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----DRQIG----ELSGGQKQRVL 149 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----CCccc----ccCcHHHHHHH
Confidence 999965 3588999999865421 1237788999999988764 33444 59999999999
Q ss_pred HHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1337 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1337 LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|||||+++|++|+|||||+++|+.++..|.+.|++..+ ||||++|+|+++.+.+ ||+|+.|. +++...|+|++.+..
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence 99999999999999999999999999999999988764 9999999999999987 79999995 678899999999875
Q ss_pred C
Q 000553 1415 E 1415 (1428)
Q Consensus 1415 ~ 1415 (1428)
+
T Consensus 229 ~ 229 (254)
T COG1121 229 E 229 (254)
T ss_pred H
Confidence 4
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=416.86 Aligned_cols=198 Identities=25% Similarity=0.336 Sum_probs=162.5
Q ss_pred CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCeeCCCCChHhHhcceEEEeCCcccc-C
Q 000553 1204 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF-E 1280 (1428)
Q Consensus 1204 ~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~--~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf-~ 1280 (1428)
+....|+|||=-++||--.|++|.||||||||++.|.+=..- .+|+|+|||.+..+ +..++++|||.|++.-. .
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 345689999999999999999999999999999999976532 47999999998765 78899999999988644 4
Q ss_pred CcHHHhcCcC------CCCChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC-CEEE
Q 000553 1281 GSLRDNLDPF------HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS-KVLC 1349 (1428)
Q Consensus 1281 gTIR~NLdp~------~~~~d~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~-~ILl 1349 (1428)
-||||-|.+. .+.+++| +.++++..+|.+.- |..||..|..||..||.||.||=-|+.|| .||.
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-----daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-----DALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-----hhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 5999998542 2334443 23344444443332 45678878889999999999999999999 8999
Q ss_pred EeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh--hhhcCEEEEEeC-CeEEEecChh
Q 000553 1350 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST--VLNMDEILILDH-GHLVEQGNPQ 1409 (1428)
Q Consensus 1350 LDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~t--i~~~DrI~Vl~~-G~ive~g~p~ 1409 (1428)
||||||+||.++...|.+.+|+.. .|+||+..-|.++. .+.+||++.|++ |+.|.+|++.
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 999999999999999999999875 69999999999885 356899999974 8999888764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=355.48 Aligned_cols=200 Identities=28% Similarity=0.361 Sum_probs=172.9
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.|+++|++-+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|+|.++|
T Consensus 2 mi~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 3678888887753 2359999999999999999999999999999999999999999999988
Q ss_pred --cEEEEcCCCCCCcc-cHHHHHhcCCC----CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 --SIAYVPQVPWILSG-TIRDNILFGKN----YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~----~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
++|+|+|+..||.- ||.|||..+.- .+ +++-.+.++..+|.+..+..|. .||||||||
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQR 144 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQR 144 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHH
Confidence 37899999999865 99999998631 22 3445567778888777666665 899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el 820 (1428)
|||||||..+|+++|+|||||||||+....+.+- +......|.|.|+|||.+.+... ||||+.|++|+|+++|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~v-m~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDV-MKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHH-HHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 9999999999999999999999999999988875 33324567899999999999986 999999999999999999988
Q ss_pred Hh
Q 000553 821 AV 822 (1428)
Q Consensus 821 ~~ 822 (1428)
..
T Consensus 224 f~ 225 (240)
T COG1126 224 FD 225 (240)
T ss_pred hc
Confidence 54
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=377.60 Aligned_cols=231 Identities=37% Similarity=0.611 Sum_probs=207.2
Q ss_pred EEEEEEEEEECCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1192 IEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999653 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeCCccccCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1271 VVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1271 ~VpQdp~lf~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
|+||+|.+|+.|+++|+..... ...+++.+.++..++.+.+..+ |+++.++....+||+|||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999976432 3455677778888888888877 888888888889999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1423 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~ 1423 (1428)
|||||||++||+.+.+.+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|+++++.+.. +..+.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK-GVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC-hhHHHHh
Confidence 99999999999999999999998876789999999999999889999999999999999999998754 4555554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=383.96 Aligned_cols=221 Identities=29% Similarity=0.459 Sum_probs=193.6
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++||+++|++.. +|+|+|++|+.||.++++||||||||||+++|.|+.+|++|+|.|||.|+.++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997543 999999999999999999999999999999999999999999999999999999875 7899
Q ss_pred EEeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
+|+|+..||+- ||++||.+.-. .+.+|+.+.. .+..+.++++..+...+..||||||||++|||||.++|+
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV-----~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRV-----KEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHH-----HHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 99999999986 99999986532 2334443222 233344577777888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~ 1420 (1428)
+++||||.|+||......+..-|++..+ +.|+|.|||+....+. +|||+||++|+|.+.|+|.|+.+++...|-
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fV 230 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFV 230 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhh
Confidence 9999999999999999998888877543 7899999999998876 799999999999999999999998877663
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=356.47 Aligned_cols=225 Identities=29% Similarity=0.463 Sum_probs=185.7
Q ss_pred cEEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC-ChHhHhc
Q 000553 1191 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT-PVRDLRG 1267 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i-~~~~lR~ 1267 (1428)
.++++|+++.|+... .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+.... +....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997542 2599999999999999999999999999999999999999999999999776543 3446788
Q ss_pred ceEEEeCCcc--ccC-CcHHHhcC-cCCC----CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000553 1268 RFAVVPQSPF--LFE-GSLRDNLD-PFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1339 (1428)
Q Consensus 1268 ~i~~VpQdp~--lf~-gTIR~NLd-p~~~----~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1339 (1428)
.+-+|+|||. |=+ -||++-|. |... ...++++++|+.+||.+. .....+..||||||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~--------~l~R~P~eLSGGQ~QRiaIAR 154 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS--------FLDRRPHELSGGQRQRIAIAR 154 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH--------HHhcCchhcChhHHHHHHHHH
Confidence 8999999996 222 26666552 2221 123456777777665432 344566679999999999999
Q ss_pred HHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1340 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1340 ALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
||.-+|++||+|||||+||.-..+.|.+.+.+..+ +-|.|+|||++..+.. ||||+||++|+++|.++-.++.+.+.
T Consensus 155 AL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~ 234 (252)
T COG1124 155 ALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS 234 (252)
T ss_pred HhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCc
Confidence 99999999999999999999999999999987765 4599999999999987 89999999999999999999998755
Q ss_pred cHHHHHH
Q 000553 1417 SVFSSFV 1423 (1428)
Q Consensus 1417 s~f~~l~ 1423 (1428)
..|.+.+
T Consensus 235 h~ytr~L 241 (252)
T COG1124 235 HPYTREL 241 (252)
T ss_pred cHHHHHH
Confidence 5555543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=353.94 Aligned_cols=229 Identities=28% Similarity=0.451 Sum_probs=196.6
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH---hH
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DL 1265 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~---~l 1265 (1428)
.-.|++++|+++|.+ ..|++||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++.+ .+
T Consensus 6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 347999999999964 4699999999999999999999999999999999999999999999999999888764 56
Q ss_pred hcceEEEeCCccccCC-cHHHhcCc-CCCC---ChHHHHHHHHHccHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHH
Q 000553 1266 RGRFAVVPQSPFLFEG-SLRDNLDP-FHMN---DDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLAR 1339 (1428)
Q Consensus 1266 R~~i~~VpQdp~lf~g-TIR~NLdp-~~~~---~d~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQrl~LAR 1339 (1428)
|+++|++.|+..||+. ||+||+.+ ..++ +++++.+ +.. ..++..||... ....++.||||.+.|++|||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~-lv~----~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE-LVL----MKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHH-HHH----HHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 9999999999999987 99999964 3333 3343332 111 11233377776 44567789999999999999
Q ss_pred HHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1340 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1340 ALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
|+.-+|+||++|||||+||+-+...+-+.|++..+ +.|+++|||+++++.. ||||+++.+|+|+-.|+|+|+.+.++
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~ 238 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD 238 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999888877643 8999999999999987 69999999999999999999999888
Q ss_pred cHHHHHHH
Q 000553 1417 SVFSSFVR 1424 (1428)
Q Consensus 1417 s~f~~l~~ 1424 (1428)
-..++.++
T Consensus 239 P~v~qf~~ 246 (263)
T COG1127 239 PWVRQFFN 246 (263)
T ss_pred HHHHHHhc
Confidence 77777664
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=376.41 Aligned_cols=226 Identities=31% Similarity=0.450 Sum_probs=192.6
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000553 1271 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLC 1349 (1428)
Q Consensus 1271 ~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL~~~~ILl 1349 (1428)
++||+|.+|+.|+++|+.......+.+ ...+.+.++.+|++ .........||||||||++||||++++|++||
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 154 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL 154 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcH------HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999997532211111 01123344445665 34566677899999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHHHHH
Q 000553 1350 LDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424 (1428)
Q Consensus 1350 LDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~ 1424 (1428)
|||||++||.++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++..++...+.+.+.
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 232 (241)
T PRK14250 155 LDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFI 232 (241)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 999999999999999999998764 37999999999999876 8999999999999999999998766545655443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=370.04 Aligned_cols=215 Identities=32% Similarity=0.511 Sum_probs=192.6
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC-CCChHhHhcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~-~i~~~~lR~~i 1269 (1428)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 78999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEeCCc--cccCCcHHHhcCcCCC---CChHHH----HHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1270 AVVPQSP--FLFEGSLRDNLDPFHM---NDDLKI----WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1270 ~~VpQdp--~lf~gTIR~NLdp~~~---~~d~ei----~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
|+|.|+| .+|..||.+.+.++.. .+.+|+ .++|+.+ |+.........+||||||||+|||.+
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~v---------gl~~~~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELV---------GLEELLDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHc---------CchhhccCCccccCCcceeeHHhhHH
Confidence 9999999 7999999999987643 244443 3444444 44444566777999999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
|..+|+|||||||||+||+...+.+.+.+++..+ +.|+|+|||+++.+.. |||++||++|+++.+|+|+++.++.
T Consensus 153 La~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 153 LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 9999999999999999999999999999998754 4799999999999998 8999999999999999999999864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=375.38 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=184.8
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh---HhHhcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1268 (1428)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999963 469999999999999999999999999999999999999999999999999987764 567889
Q ss_pred eEEEeCCccccCC-cHHHhcCcCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
++++||+|.+|++ |+++|+.... ..+.++..+. ..+.++.+|++.........||||||||++|||||++
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999999986 9999996431 1222222211 2233444466555556666899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||||++|++|++++.|+++++.+..
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 228 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCC
Confidence 9999999999999999999999999988643 7899999999999876 8999999999999999999998643
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=370.70 Aligned_cols=217 Identities=37% Similarity=0.540 Sum_probs=196.8
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
|.++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999965335699999999999999999999999999999999999999999999999999888777788999
Q ss_pred EEEeCCccccCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1270 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1270 ~~VpQdp~lf~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
+++||+|.+|+.|+++|+..... .+.+++.+.++..++.+.++.. |+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999976432 3445677888999998888776 89988888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEec
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g 1406 (1428)
+|||||||++||.++.+.+.+.|++..+++|||++||+++.+.-||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988779999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=391.25 Aligned_cols=224 Identities=27% Similarity=0.428 Sum_probs=190.8
Q ss_pred EEEEEEEEEECC--CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh---Hh
Q 000553 1192 IEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1266 (1428)
Q Consensus 1192 I~f~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1266 (1428)
|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2357999999999999999999999999999999999999999999999999998877654 47
Q ss_pred cceEEEeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1267 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1267 ~~i~~VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
++++||||++.+|+ .|+++|+.... ..++++..+ .+.+.++.+|++.........||||||||++|||||+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 89999999999887 69999996431 122222211 2334555557776667777789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f 1419 (1428)
++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+++++..++...+
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 236 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPL 236 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 99999999999999999999999999988643 7899999999999886 89999999999999999999987654434
Q ss_pred H
Q 000553 1420 S 1420 (1428)
Q Consensus 1420 ~ 1420 (1428)
.
T Consensus 237 ~ 237 (343)
T PRK11153 237 T 237 (343)
T ss_pred H
Confidence 3
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=374.42 Aligned_cols=213 Identities=32% Similarity=0.463 Sum_probs=180.1
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC-----CCCCceEEECCeeCCCCC--hHh
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-----PICGGQILVDGLNIINTP--VRD 1264 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~-----~~~~G~I~IDG~di~~i~--~~~ 1264 (1428)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999998776 567
Q ss_pred HhcceEEEeCCccccCCcHHHhcCcCCC---C-ChHHHHHHHHHccHHHHHHhCCCchhhhcC--CCCCChhHHHHHHHH
Q 000553 1265 LRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-DDLKIWSVLEKCHVKEEVEAVGLETFVKES--GISFSVGQRQLICLA 1338 (1428)
Q Consensus 1265 lR~~i~~VpQdp~lf~gTIR~NLdp~~~---~-~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~--G~~LSgGQrQrl~LA 1338 (1428)
+|++++|+||++.+|..|+++|+.+... . .+++..+ .+.+.++.+|++...... +.+||||||||++||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE-----RVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHH-----HHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 7889999999999998899999965321 1 1111111 122333444555444444 468999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHH
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eL 1411 (1428)
|||+++|++|||||||++||+++.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999987656899999999999876 899999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=356.23 Aligned_cols=208 Identities=30% Similarity=0.421 Sum_probs=173.7
Q ss_pred EEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh---HhH-
Q 000553 1192 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDL- 1265 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~---~~l- 1265 (1428)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++..|++|.|.++|.|+..++- ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999997543 368999999999999999999999999999999999999999999999999999884 334
Q ss_pred hcceEEEeCCccccCC-cHHHhcCc---CCCCChHHHHHHHHHccHHHHHHhCCCchhhh-cCCCCCChhHHHHHHHHHH
Q 000553 1266 RGRFAVVPQSPFLFEG-SLRDNLDP---FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK-ESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1266 R~~i~~VpQdp~lf~g-TIR~NLdp---~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~-e~G~~LSgGQrQrl~LARA 1340 (1428)
|++||+|+|+..|++. |++||+.. +......+..++ ..+..+.+||..... .....||||||||+|||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~-----~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA-----AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH-----HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence 4679999999999876 99999862 222221111111 122333346665444 5577899999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeCCeEEE
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVE 1404 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive 1404 (1428)
|+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+|||+......|||++.|.+|++.+
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999998874 3789999999999999999999999999543
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=381.53 Aligned_cols=218 Identities=30% Similarity=0.505 Sum_probs=185.3
Q ss_pred EEEEEEEEEECCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC--hHhHh
Q 000553 1192 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDLR 1266 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~--~~~lR 1266 (1428)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997432 46999999999999999999999999999999999999999999999999998753 45788
Q ss_pred cceEEEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCc--hhhhcCCCCCChhHHHHHHHHH
Q 000553 1267 GRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE--TFVKESGISFSVGQRQLICLAR 1339 (1428)
Q Consensus 1267 ~~i~~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLd--t~v~e~G~~LSgGQrQrl~LAR 1339 (1428)
++++||||+| .+|+.|+++|+.+.. ..++++..+. ..+.++.+||+ .........||||||||++|||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 9999999998 578899999997432 1233332211 12333444665 4456667789999999999999
Q ss_pred HHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1340 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1340 ALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
||+.+|+||||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++++++
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999988653 7899999999999865 899999999999999999998763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=373.10 Aligned_cols=219 Identities=26% Similarity=0.430 Sum_probs=187.6
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCeeCCCCChHhHhc
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLRG 1267 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR~ 1267 (1428)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999964 469999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ceEEEeCCccccCCcHHHhcCcCCCC---------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000553 1268 RFAVVPQSPFLFEGSLRDNLDPFHMN---------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1268 ~i~~VpQdp~lf~gTIR~NLdp~~~~---------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1338 (1428)
+++|+||+|.+|+.|+++|+.++... .++++.++++.+++.+.+ .....+.+.+||+|||||++||
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-----KDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-----hHHhcCCcccCCHHHHHHHHHH
Confidence 99999999999999999999754211 111233444444432221 1234566778999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
|||+++|++|||||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 233 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCC
Confidence 9999999999999999999999999999999887678999999999998875 89999999999999999999987553
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=387.62 Aligned_cols=223 Identities=29% Similarity=0.434 Sum_probs=189.9
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcc
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1268 (1428)
+..|+++|++++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.+ |++
T Consensus 4 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 79 (351)
T PRK11432 4 KNFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRD 79 (351)
T ss_pred CcEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 347999999999963 4699999999999999999999999999999999999999999999999999887653 578
Q ss_pred eEEEeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
+++|+|++.+|+. ||++|+.+.-. .+++++.+. +.+.++.+|++.........||||||||++|||||+++
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~-----v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR-----VKEALELVDLAGFEDRYVDQISGGQQQRVALARALILK 154 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH-----HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999999986 99999975321 222322211 12233333555555666778999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~ 1420 (1428)
|+||+||||||+||..+.+.+++.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|+++.+++...|.
T Consensus 155 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~ 233 (351)
T PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233 (351)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchHH
Confidence 999999999999999999999999988754 7999999999999866 899999999999999999999988876554
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=369.75 Aligned_cols=214 Identities=27% Similarity=0.394 Sum_probs=181.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++||+++|+.+.+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999753356999999999999999999999999999999999999999999999999987643 567889999
Q ss_pred EeCCcccc-CCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf-~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||+|.+| ..|+++|+.... ..+.++..+ ...+.++.+|++........+||+|||||++||||++++|++
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999988 569999986421 112211111 123344444665555555668999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHH
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eL 1411 (1428)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999987777999999999999976 899999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=379.30 Aligned_cols=220 Identities=28% Similarity=0.440 Sum_probs=187.6
Q ss_pred cEEEEEEEEEECCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1191 LIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
.++++||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeCCcc--ccCCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1270 AVVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1270 ~~VpQdp~--lf~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
+++||+|. ++..||++|+.+... .+.++..+ ...+.++.+|++........+||||||||++|||||+++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE-----RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999983 566799999975321 22222111 112333444565556666778999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccC
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|++|++++.|+++++.+++
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 999999999999999999999999987643 89999999999999889999999999999999999988653
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=373.72 Aligned_cols=222 Identities=26% Similarity=0.442 Sum_probs=187.3
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH-hcceE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1270 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1270 (1428)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999988776554 57899
Q ss_pred EEeCCccccCC-cHHHhcCcCCCC-ChHHH-------HHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHMN-DDLKI-------WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~~~-~d~ei-------~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
++||+|.+|++ |+++|+...... ....+ ...-......+.++.+|++...+.....||||||||++|||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 99999999987 999998643211 00000 0000111234556666887777777789999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 234 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccCC
Confidence 99999999999999999999999999998764 68999999999999977 8999999999999999999997643
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=349.39 Aligned_cols=221 Identities=28% Similarity=0.430 Sum_probs=190.1
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC---hHhHhc
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRG 1267 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~---~~~lR~ 1267 (1428)
.|+++||+.+|+ +...+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++...+ ++.+|+
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 589999999997 4567999999999999999999999999999999999999999999999999998887 677789
Q ss_pred ceEEEeCCccccCC-cHHHhcCc------------CCCCChH---HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhH
Q 000553 1268 RFAVVPQSPFLFEG-SLRDNLDP------------FHMNDDL---KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1331 (1428)
Q Consensus 1268 ~i~~VpQdp~lf~g-TIR~NLdp------------~~~~~d~---ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQ 1331 (1428)
++|+|.|++-|-+. |+-+|+.. ++.++.+ ...++|+++|+.+.. -.+..+|||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A---------~qra~~LSGGQ 152 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA---------YQRASTLSGGQ 152 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH---------HHHhccCCcch
Confidence 99999999998875 89999742 2334433 345666666665543 33445799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecCh
Q 000553 1332 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1332 rQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p 1408 (1428)
+||++|||||..+|+|++-|||+|+||+.+.+.|++.|++.. .|.|||+.-|.++..+. ||||+-|++|+|+..|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999998864 58999999999999987 699999999999999999
Q ss_pred hHHhccCCcHHHHHHH
Q 000553 1409 QTLLQDECSVFSSFVR 1424 (1428)
Q Consensus 1409 ~eLl~~~~s~f~~l~~ 1424 (1428)
+||-+ ..+.+.|.
T Consensus 233 ~el~~---~~~~~iYg 245 (258)
T COG3638 233 SELTD---EALDEIYG 245 (258)
T ss_pred hhhhH---HHHHHHhc
Confidence 99643 24555543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=388.70 Aligned_cols=222 Identities=23% Similarity=0.352 Sum_probs=189.1
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999422 4699999999999999999999999999999999999999999999999999887764 47899
Q ss_pred EEeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
||||++.+|+. ||++|+.+... .+..+..+ ...+.++.+|++...+.....||||||||++|||||+++|+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999975 99999975422 22222211 12233444466666666777899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~ 1420 (1428)
+||||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++...|.
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHH
Confidence 9999999999999999999999987653 7899999999998865 899999999999999999999988765554
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=387.65 Aligned_cols=221 Identities=28% Similarity=0.421 Sum_probs=192.0
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.. +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 4699999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EEeCCccccC-CcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1271 VVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~VpQdp~lf~-gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
||||++.+|+ .||++|+.+... .+..+.. ....+.++.+||+.........||||||||++|||||+++|+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999997 599999975321 1222221 123445555678777777888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~ 1420 (1428)
+|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++...|-
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFV 231 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 9999999999999999999999987653 7899999999999865 899999999999999999999998876663
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=374.87 Aligned_cols=221 Identities=28% Similarity=0.405 Sum_probs=188.1
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CC
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TP 1261 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~--i~ 1261 (1428)
++.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 578999999999964 369999999999999999999999999999999999986 589999999999863 45
Q ss_pred hHhHhcceEEEeCCccccCCcHHHhcCcCC----CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000553 1262 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1333 (1428)
Q Consensus 1262 ~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1333 (1428)
...+|++++|+||+|.+|+.|+++|+.... ..+. ++++++++.+++.+. ++...++...+||+||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-----VKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-----hHHHHhcCCCCCCHHHHH
Confidence 667899999999999999999999997531 1222 234444444443221 124456677789999999
Q ss_pred HHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1334 rl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
|++|||||+++|+||||||||++||.++.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987678899999999999875 8999999999999999999998
Q ss_pred ccCC
Q 000553 1413 QDEC 1416 (1428)
Q Consensus 1413 ~~~~ 1416 (1428)
+.+.
T Consensus 244 ~~~~ 247 (260)
T PRK10744 244 TKPA 247 (260)
T ss_pred hCCC
Confidence 7543
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=380.60 Aligned_cols=219 Identities=27% Similarity=0.431 Sum_probs=187.4
Q ss_pred cEEEEEEEEEECCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----ChH
Q 000553 1191 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i----~~~ 1263 (1428)
.|+++||+++|+++. +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 379999999996432 3699999999999999999999999999999999999999999999999999654 346
Q ss_pred hHhcceEEEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHH
Q 000553 1264 DLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICL 1337 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~L 1337 (1428)
.+|++|+||||+| .+|+.|+++|+.+.. ..+.++..+. ..+.++.+||++ ..+..+.+||||||||++|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 7899999999998 588889999996532 1232222221 234555668874 4566788999999999999
Q ss_pred HHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1338 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1338 ARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999998764 48999999999999865 799999999999999999998874
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=369.70 Aligned_cols=216 Identities=28% Similarity=0.393 Sum_probs=183.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999876553 3678999
Q ss_pred EeCCccccC-CcHHHhcCcCCCC-------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
+||+|.+|+ .|+++|+.+.... +..+.. ..+.+.++.+|++........+||+|||||++|||||++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999986 5999999753211 111111 112344455577666666677899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
+|++|||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 229 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229 (239)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCCC
Confidence 9999999999999999999999999987643 7899999999998765 89999999999999999999986543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=371.97 Aligned_cols=226 Identities=29% Similarity=0.453 Sum_probs=190.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeCCccccC-CcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCch--hhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLET--FVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt--~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
+||+|.+|+ .|+++|+..... .+.++. .....+.++.+|++. .....+.+||+|||||++||||++++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999986 599999964321 111111 112344555567764 556777899999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCc-HHHH
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS-VFSS 1421 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s-~f~~ 1421 (1428)
++|||||||++||+++.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+++.. .+..
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCChHHHH
Confidence 9999999999999999999999998864 37999999999998765 899999999999999999999765433 3344
Q ss_pred HH
Q 000553 1422 FV 1423 (1428)
Q Consensus 1422 l~ 1423 (1428)
+.
T Consensus 235 ~~ 236 (242)
T cd03295 235 FV 236 (242)
T ss_pred Hh
Confidence 43
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=371.81 Aligned_cols=221 Identities=29% Similarity=0.437 Sum_probs=186.7
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCeeCCCC--ChHh
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINT--PVRD 1264 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~-----~G~I~IDG~di~~i--~~~~ 1264 (1428)
++++||+++|+. .++++|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999763 4566
Q ss_pred HhcceEEEeCCccccCCcHHHhcCcCC---C-CChHHHHHHHHHccHHHHHHhCCCc----hhhhcCCCCCChhHHHHHH
Q 000553 1265 LRGRFAVVPQSPFLFEGSLRDNLDPFH---M-NDDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQLIC 1336 (1428)
Q Consensus 1265 lR~~i~~VpQdp~lf~gTIR~NLdp~~---~-~~d~ei~~aL~~~~l~~~i~~lgLd----t~v~e~G~~LSgGQrQrl~ 1336 (1428)
.|++++|+||++.+|+.|+++|+.... . .+.++..+ ...+.++.+|++ ........+||||||||++
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLC 154 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHH
Confidence 788999999999999999999996421 1 11111111 122333444554 4556667789999999999
Q ss_pred HHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1337 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1337 LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
|||||+++|+++||||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 234 (247)
T TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNP 234 (247)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999987667899999999999876 8999999999999999999998765
Q ss_pred CcHH
Q 000553 1416 CSVF 1419 (1428)
Q Consensus 1416 ~s~f 1419 (1428)
...+
T Consensus 235 ~~~~ 238 (247)
T TIGR00972 235 KEKR 238 (247)
T ss_pred CChH
Confidence 4444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=367.80 Aligned_cols=215 Identities=26% Similarity=0.423 Sum_probs=182.3
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH-hcceE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1270 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1270 (1428)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988776554 67899
Q ss_pred EEeCCccccCC-cHHHhcCcCCCCC-hHHHHHHHHHccHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHMND-DLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~~~~-d~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
|+||++.+|++ |+++|+.+..... +.+..+ .+.+.++.+ +++...+.....||+|||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999987 9999996542211 111111 122233333 455555666778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999998764 57999999999999876 89999999999999999988864
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=373.08 Aligned_cols=223 Identities=26% Similarity=0.390 Sum_probs=187.7
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--CCh
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1262 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1262 (1428)
..++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 6 AIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred ceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 36999999999964 4699999999999999999999999999999999999997 48999999999863 345
Q ss_pred HhHhcceEEEeCCccccCCcHHHhcCcCCC----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~----~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1334 (1428)
...|++++|+||+|.+|+.|+++|+.+... .+ ++++.++++.+++.+.+ +......+.+||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-----KDKLNTNALSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-----HHHHhCCcccCCHHHHHH
Confidence 667889999999999999999999964321 11 22344555555543222 223344567899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
++|||||+++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778999999999999866 89999999999999999999987
Q ss_pred cCCcHH
Q 000553 1414 DECSVF 1419 (1428)
Q Consensus 1414 ~~~s~f 1419 (1428)
++.-.|
T Consensus 239 ~~~~~~ 244 (254)
T PRK14273 239 NPKNTK 244 (254)
T ss_pred CCCChH
Confidence 654333
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=367.01 Aligned_cols=215 Identities=35% Similarity=0.525 Sum_probs=194.0
Q ss_pred CCccEEEEEEEEEECCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHh
Q 000553 1188 FQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1266 (1428)
Q Consensus 1188 ~~g~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR 1266 (1428)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999753 24699999999999999999999999999999999999999999999999999888877888
Q ss_pred cceEEEeCCccccCCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1267 GRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1267 ~~i~~VpQdp~lf~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
++++++||+|.+|++|+++|+++... ....++++..+..++.+.++.+ |+++.+++...+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999985432 2334555666667788888888 89988898899999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeE
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1402 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1402 (1428)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987778999999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=377.78 Aligned_cols=218 Identities=29% Similarity=0.460 Sum_probs=184.7
Q ss_pred EEEEEEEEEECCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC----CChHh
Q 000553 1192 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----TPVRD 1264 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~----i~~~~ 1264 (1428)
|+++||+++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEeCCc--cccCCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000553 1265 LRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1265 lR~~i~~VpQdp--~lf~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LA 1338 (1428)
+|++++||+|+| .+|+.|+.+|+.+... .+.+++.+ ...+.++.+|++ ........+||||||||++||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 899999999998 7899999999964321 22222211 123344445664 345667778999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+|+++..+
T Consensus 157 ~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999998754 48999999999998865 899999999999999999999764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=335.44 Aligned_cols=207 Identities=28% Similarity=0.373 Sum_probs=180.7
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh---HhHhcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1268 (1428)
|+|+||+++|+.+ +++|+||||+|++||.+=++||||||||||+++|++...|++|+|.++|.|+++++. .-||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999877 789999999999999999999999999999999999999999999999999988765 458999
Q ss_pred eEEEeCCccccCC-cHHHhcCcCC---CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~---~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
||+|.||--|.+. ||.||+.+-- ..+. +++.++|+.+||.+ ....-+..|||||+||+|||||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~---------k~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH---------KARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch---------hhhcCccccCchHHHHHHHHHH
Confidence 9999999987765 9999986421 1222 23455666665554 4444566899999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhc-CEEEEEeCCeEEEecCh
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~-DrI~Vl~~G~ive~g~p 1408 (1428)
+..+|++||-||||-|||+++...|.+.+.+.- .|.||++.||+.+.+.++ -|++.+++|+++....+
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999998764 599999999999999997 78999999999987654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=370.16 Aligned_cols=219 Identities=28% Similarity=0.434 Sum_probs=185.3
Q ss_pred EEEEEEEEEECCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH---hHh
Q 000553 1192 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1266 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1266 (1428)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 12699999999999999999999999999999999999999999999999999876643 347
Q ss_pred cceEEEeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1267 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1267 ~~i~~VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
++++|+||+|.+|+ .|+++|+.... ..+..+. .....+.++.+|++........+||+|||||++||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 89999999999997 59999986421 1121111 112234455557766666667789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
++|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||++++|++|++++.|+++++.+++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 232 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCC
Confidence 9999999999999999999999999998764 37899999999999876 8999999999999999999987643
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=372.53 Aligned_cols=219 Identities=28% Similarity=0.422 Sum_probs=185.5
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1263 (1428)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 369999999999999999999999999999999999975 589999999999875 3455
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~----~~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
.+|++++|+||++.+|++|+++|+.+.. ... ++++.++++.+++.+.+ +...+....+||||||||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-----KDRLHESALGLSGGQQQRL 158 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-----hHHhhCCcccCCHHHHHHH
Confidence 7788999999999999999999996421 111 22344445544443221 2334566778999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999987667899999999999865 899999999999999999999876
Q ss_pred CC
Q 000553 1415 EC 1416 (1428)
Q Consensus 1415 ~~ 1416 (1428)
+.
T Consensus 239 ~~ 240 (253)
T PRK14242 239 PR 240 (253)
T ss_pred CC
Confidence 54
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=374.79 Aligned_cols=219 Identities=25% Similarity=0.340 Sum_probs=195.8
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.|+++|+++.|+... ..+|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++|
T Consensus 2 ~i~~~nls~~~~~~~----~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEGG----NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCCC----CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHh
Confidence 478999999996432 235999999999999999999999999999999999998 799999876
Q ss_pred -cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000553 673 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 751 (1428)
.|+||+|+|++|++|++||+....++++++..++++.++|+..+..+|++++|.++++|.+||||||||++||||++++
T Consensus 77 ~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 77 KAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred hhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999964445677888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHhccccCccc
Q 000553 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWS 830 (1428)
Q Consensus 752 ~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~~~~~~~~~ 830 (1428)
|+|+||||||++||+.+.+.+.+. +.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+....+..+
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~-l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 233 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKT-LKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQA 233 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHH-HHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHH
Confidence 999999999999999999877776 443 34578999999999999899999999999999999999998765444433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=374.87 Aligned_cols=216 Identities=25% Similarity=0.406 Sum_probs=183.0
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeCCc--cccCCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1271 VVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1271 ~VpQdp--~lf~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
|+||+| .++..|+++|+.+... .+..+..+ .+.+.++.+|+..........||||||||++|||||+++|
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p 157 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-----RVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDP 157 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999998 6788999999975321 12111111 1222333335544455555689999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 158 DVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999998764 48999999999999865 8999999999999999997653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=374.26 Aligned_cols=220 Identities=25% Similarity=0.468 Sum_probs=189.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|+++.+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999744457999999999999999999999999999999999999999999999999998888788899999
Q ss_pred EEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1271 VVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1271 ~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
|+||+| .++..|+++|+.+.. ..++++..+ .+.+.++.+|++..+.....+||+|||||++|||||+++|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998 455679999996531 123332221 1233445557776677777899999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccC
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+++
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999988643 48999999999999889999999999999999999987653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=373.57 Aligned_cols=223 Identities=25% Similarity=0.390 Sum_probs=188.8
Q ss_pred CCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--
Q 000553 1187 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN-- 1259 (1428)
Q Consensus 1187 p~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~-- 1259 (1428)
|....|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++..
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34567999999999964 369999999999999999999999999999999999987 689999999999863
Q ss_pred CChHhHhcceEEEeCCccccCCcHHHhcCcCCC---CC---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000553 1260 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1333 (1428)
Q Consensus 1260 i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~---~~---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1333 (1428)
.+...+|++++|+||+|.+|+.|+++|+.+... .. ++++.++++.++++. +++.........||+||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-----ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-----hhhhhhCCCcccCCHHHHH
Confidence 456778899999999999999999999975422 11 233444555554432 2233455566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeC-----------Ce
Q 000553 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-----------GH 1401 (1428)
Q Consensus 1334 rl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~-----------G~ 1401 (1428)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.+ ||||++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999987668999999999999876 899999996 67
Q ss_pred EEEecChhHHhccCC
Q 000553 1402 LVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1402 ive~g~p~eLl~~~~ 1416 (1428)
++|.|++++++.++.
T Consensus 242 ~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 242 LVEFNETKKIFNSPK 256 (269)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999999987553
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=370.78 Aligned_cols=215 Identities=29% Similarity=0.424 Sum_probs=183.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC---hHhHhcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~---~~~lR~~ 1268 (1428)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 46999999999999999999999999999999999999999999999999998776 4567889
Q ss_pred eEEEeCCccccC-CcHHHhcCcCCC------------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1269 FAVVPQSPFLFE-GSLRDNLDPFHM------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1269 i~~VpQdp~lf~-gTIR~NLdp~~~------------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
++++||++.+|+ .|+++|+..... .+++. .....+.++.+|++......+..||||||||+
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE------KQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHH------HHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 999999998887 599999964211 11110 11123344455776666777789999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
+|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999998864 37999999999999985 8999999999999999999974
Q ss_pred c
Q 000553 1413 Q 1413 (1428)
Q Consensus 1413 ~ 1413 (1428)
+
T Consensus 234 ~ 234 (241)
T cd03256 234 D 234 (241)
T ss_pred H
Confidence 3
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=367.51 Aligned_cols=215 Identities=27% Similarity=0.422 Sum_probs=185.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998776544 458999
Q ss_pred EeCCcccc-CCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLF-EGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf-~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||++.++ ..|+++|+..... .+..+.. ....+.++.+|++...+....+||||||||++||||++++|+|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999874 5799999965321 1111111 1233455556787777777789999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhcc
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999998765 47999999999999988999999999999999999999875
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=374.32 Aligned_cols=219 Identities=25% Similarity=0.459 Sum_probs=188.4
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCc--cccCCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1271 VVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1271 ~VpQdp--~lf~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
|+||+| .+++.|+++|+..... .+.++..+ ...+.++.+||+..+......||||||||++|||||+.+|
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998 4667899999975321 12222211 1223333346665566666789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhcc
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999987653 7899999999999999999999999999999999998764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=382.89 Aligned_cols=220 Identities=24% Similarity=0.375 Sum_probs=187.7
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999964 469999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEeCCccccCC-cHHHhcCcCCC-------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~~-------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
||||++.+|+. |+++|+.+... .+.+++.+ ...+.++.+|++.........||||||||++|||||+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999985 99999975321 12222211 1233444446665566667789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f 1419 (1428)
++|++||||||||+||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++...|
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~ 232 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999999988653 7899999999999876 89999999999999999999998776544
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=380.45 Aligned_cols=217 Identities=28% Similarity=0.415 Sum_probs=184.9
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
..|+++|++++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 46999999999999999999999999999999999999999999999999997755 4578999
Q ss_pred EEEeCCccccC-CcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1270 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1270 ~~VpQdp~lf~-gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
+|+||+|.+|+ .|++||+.++.. .++.+..+. ..+.++.+|++........+||+|||||++|||||+++|
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P 157 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence 99999999886 599999975332 122222111 223344445554444455589999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
++|+|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999998864 47899999999999976 899999999999999999999764
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=385.27 Aligned_cols=209 Identities=26% Similarity=0.386 Sum_probs=180.1
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH----hcceEEEeCCccccCC
Q 000553 1206 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG 1281 (1428)
Q Consensus 1206 ~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~i~~VpQdp~lf~g 1281 (1428)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.|||.|+...+...+ |++++||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999988877 7899999999999985
Q ss_pred -cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCC
Q 000553 1282 -SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357 (1428)
Q Consensus 1282 -TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~l 1357 (1428)
||++|+.+... .+.++..+ ...+.++.+||+...+..+.+||||||||++|||||+++|+|||||||||+|
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999964321 22222211 1223344447776777788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000553 1358 DAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1358 D~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f 1419 (1428)
|+.+.+.+++.+++.. .++|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...|
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999998764 38999999999998755 89999999999999999999998764444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=374.83 Aligned_cols=218 Identities=28% Similarity=0.434 Sum_probs=186.5
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC--CCChHhHhcc
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--NTPVRDLRGR 1268 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~--~i~~~~lR~~ 1268 (1428)
.|+++||+++|++ .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 5899999999963 246999999999999999999999999999999999999999999999999984 3445678899
Q ss_pred eEEEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1269 FAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1269 i~~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
++|+||+| .+|+.|+++|+.... ..+.++.++. ..+.++.+|++........+||+|||||++|||||+.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999998 578899999996421 1233222221 2233444566666667778999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||||++|++|++++.|+++++++.
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988753 7999999999999974 899999999999999999999864
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=364.50 Aligned_cols=212 Identities=26% Similarity=0.403 Sum_probs=180.7
Q ss_pred cEEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh---H
Q 000553 1191 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---L 1265 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~---l 1265 (1428)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999998887654 3
Q ss_pred h-cceEEEeCCccccCC-cHHHhcCcC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1266 R-GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1266 R-~~i~~VpQdp~lf~g-TIR~NLdp~---~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
| ++++|+||+|.+|++ |+++|+... .....++..+ .+.+.++.+|++........+||||||||++||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 3 679999999999876 999998642 1122221111 12344555577766677777899999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeCCeEEEecC
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGN 1407 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~ 1407 (1428)
++++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+..+|++++|++|++++.++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999998763 4799999999999999999999999999998775
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=368.94 Aligned_cols=220 Identities=30% Similarity=0.397 Sum_probs=182.3
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh---HhHhcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1268 (1428)
|+++||+++|+. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999987654 446889
Q ss_pred eEEEeCCccccC-CcHHHhcCcCCCCCh---HHHH---HHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1269 FAVVPQSPFLFE-GSLRDNLDPFHMNDD---LKIW---SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1269 i~~VpQdp~lf~-gTIR~NLdp~~~~~d---~ei~---~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
++++||++.+|+ .|+++|+........ ..+. ..-+.....+.++.+|++........+||||||||++|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 999999998887 599999964211000 0000 000011223344455676666777789999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999998764 37899999999999865 8999999999999999999974
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=371.25 Aligned_cols=224 Identities=24% Similarity=0.342 Sum_probs=186.2
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCC--CCChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII--NTPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~--~i~~~ 1263 (1428)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 5899999999964 4699999999999999999999999999999999999987 4999999999997 45566
Q ss_pred hHhcceEEEeCCccccCC-cHHHhcCcCC---C--CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---M--NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1333 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~g-TIR~NLdp~~---~--~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1333 (1428)
.+|++++++||+|.+|++ |+++|+.... . ... +++.++++..++.+.+ .........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-----KDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-----hhhhccChhhCCHHHHH
Confidence 788999999999999976 9999996421 1 011 2233344443332111 12345566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1334 rl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 8999999999999999999998
Q ss_pred ccCCcHHHH
Q 000553 1413 QDECSVFSS 1421 (1428)
Q Consensus 1413 ~~~~s~f~~ 1421 (1428)
+++...+.+
T Consensus 237 ~~~~~~~~~ 245 (253)
T PRK14267 237 ENPEHELTE 245 (253)
T ss_pred hCCCcHHHH
Confidence 765433433
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=376.71 Aligned_cols=218 Identities=29% Similarity=0.432 Sum_probs=185.0
Q ss_pred EEEEEEEEEECCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC----CChHh
Q 000553 1192 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----TPVRD 1264 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~----i~~~~ 1264 (1428)
++++|++++|++.. .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 469999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000553 1265 LRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1265 lR~~i~~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LA 1338 (1428)
.|++++||||+| .+|+.|+++|+.+.. ..+.++..+. ..+.++.+||+ .........||||||||++||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 888999999998 688889999996431 1233332211 23344555775 334666778999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999987643 7899999999999865 899999999999999999998764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=371.41 Aligned_cols=222 Identities=27% Similarity=0.402 Sum_probs=186.9
Q ss_pred CCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--C
Q 000553 1188 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--T 1260 (1428)
Q Consensus 1188 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~--i 1260 (1428)
+.+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3568999999999964 4699999999999999999999999999999999999975 89999999999875 3
Q ss_pred ChHhHhcceEEEeCCccccCCcHHHhcCcCCC---C--C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhH
Q 000553 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1331 (1428)
Q Consensus 1261 ~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~---~--~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQ 1331 (1428)
+...+|++++++||+|.+|++|+++|+.+... . + ++++.++++.+++.+.+ ....+..+.+|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-----KDRLHEPGTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-----hHHhhCCcccCCHHH
Confidence 45678899999999999999999999964211 1 1 12233444444432211 123456677899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhH
Q 000553 1332 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1332 rQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~e 1410 (1428)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999887667899999999999966 79999999999999999999
Q ss_pred HhccCC
Q 000553 1411 LLQDEC 1416 (1428)
Q Consensus 1411 Ll~~~~ 1416 (1428)
+..++.
T Consensus 249 ~~~~~~ 254 (267)
T PRK14235 249 MFTNPD 254 (267)
T ss_pred HHhCCC
Confidence 986543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=375.61 Aligned_cols=218 Identities=26% Similarity=0.413 Sum_probs=191.6
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
..|+++||+.+|+ ...+++|+||+|++||.+.+.|||||||||++++|.|+..|++|+|.+||.|+..+|.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999997 45799999999999999999999999999999999999999999999999999999986 6789
Q ss_pred EEEeCCccccCC-cHHHhcCcCCC----CChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHM----NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~----~~d~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
++|+|+..||+- ||++|+.++-. ..++ .+.++|+.+++. ..-......|||||+||++||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~---------~~~~R~p~qLSGGQqQRVALARA 150 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE---------GFADRKPHQLSGGQQQRVALARA 150 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch---------hhhhhChhhhChHHHHHHHHHHH
Confidence 999999999986 99999976533 2333 344555555544 44455667899999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCc
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1417 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s 1417 (1428)
|..+|++|+||||-|+||.+-...+|.-+++.. .+.|.|+|||+-+.... +|||+||++|+|...|+|+|+..++.+
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence 999999999999999999999999998887653 38999999999998765 799999999999999999999999887
Q ss_pred HHH
Q 000553 1418 VFS 1420 (1428)
Q Consensus 1418 ~f~ 1420 (1428)
.|-
T Consensus 231 ~fV 233 (352)
T COG3842 231 RFV 233 (352)
T ss_pred HHH
Confidence 764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=384.67 Aligned_cols=223 Identities=25% Similarity=0.409 Sum_probs=191.8
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC--ceEEECCeeCCCCChHhHh
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--GQILVDGLNIINTPVRDLR 1266 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~--G~I~IDG~di~~i~~~~lR 1266 (1428)
.|.|+++||+++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 478999999999964 369999999999999999999999999999999999999999 999999999987665 35
Q ss_pred cceEEEeCCccccCC-cHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1267 GRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1267 ~~i~~VpQdp~lf~g-TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
+++++|+|++.+|+. ||++|+.+.- ..+++++.+ ...+.++.+||+........+||||||||++|||||+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA 153 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 789999999999987 9999997432 123333222 1233445557777677777899999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhcC---CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcH
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSECK---GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSV 1418 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~---~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~ 1418 (1428)
++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|+++.+++...
T Consensus 154 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~ 233 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADG 233 (362)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcH
Confidence 99999999999999999999999999987643 6899999999999866 8999999999999999999999887655
Q ss_pred HH
Q 000553 1419 FS 1420 (1428)
Q Consensus 1419 f~ 1420 (1428)
|-
T Consensus 234 ~~ 235 (362)
T TIGR03258 234 FA 235 (362)
T ss_pred HH
Confidence 53
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=359.51 Aligned_cols=205 Identities=27% Similarity=0.353 Sum_probs=173.1
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
|++++++..|... ......+|+|+||+|++||+.+|+|.||+|||||+++|.++-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 2 IELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred eEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6788999888764 22334579999999999999999999999999999999999999999999987
Q ss_pred ---cEEEEcCCCCCCc-ccHHHHHhcCCCC----ChHHHHHHHHHh---cchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 ---SIAYVPQVPWILS-GTIRDNILFGKNY----DPQSYSETLKAC---TLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~~----~~~~~~~v~~~c---~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
+||+++|++-|++ .||.|||.|..+. .++..++|.+.+ +|.+. -+....+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-----------~~~yP~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK-----------ADRYPAQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hccCchhcCcchhhH
Confidence 5999999999997 5999999997542 234444454444 44422 345567999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el 820 (1428)
|+|||||..+|+|||.|||||||||+|.+.|++.+..-....|-|+++|||.++.++. ||++.+|++|+++|+|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999999986432223457799999999999987 999999999999999999887
Q ss_pred Hh
Q 000553 821 AV 822 (1428)
Q Consensus 821 ~~ 822 (1428)
..
T Consensus 230 F~ 231 (339)
T COG1135 230 FA 231 (339)
T ss_pred hc
Confidence 54
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=362.80 Aligned_cols=202 Identities=29% Similarity=0.394 Sum_probs=171.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH---hHhcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1268 (1428)
++++|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965434699999999999999999999999999999999999999999999999999776543 46889
Q ss_pred eEEEeCCccccC-CcHHHhcCcCC---CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1269 FAVVPQSPFLFE-GSLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1269 i~~VpQdp~lf~-gTIR~NLdp~~---~~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
++|+||+|.+|+ .|+++|+.... ... ++++.+++ +.+|++........+||||||||++||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l---------~~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAAL---------EKVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHH---------HHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999999887 49999996421 111 12233334 44455554555566899999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeE
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1402 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1402 (1428)
|+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998764 47899999999999986 799999999975
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=368.02 Aligned_cols=226 Identities=26% Similarity=0.383 Sum_probs=188.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCCChHhH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTPVRDL 1265 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~i~~~~l 1265 (1428)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 4699999999999999999999999999999999999974 69999999999988888888
Q ss_pred hcceEEEeCCcccc-CCcHHHhcCcCCC-----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1266 RGRFAVVPQSPFLF-EGSLRDNLDPFHM-----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1266 R~~i~~VpQdp~lf-~gTIR~NLdp~~~-----~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
|++++|+||+|.+| ..|+++|+.+... .. ++++.++++.+++.+.+ +........+||||||||+
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-----KDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-----hhhhcCCcccCCHHHHHHH
Confidence 99999999999765 5699999964211 01 12334444444432211 1234555668999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 9999999999999999999999999999999999987678999999999999865 899999999999999999999876
Q ss_pred CCcHHHHHH
Q 000553 1415 ECSVFSSFV 1423 (1428)
Q Consensus 1415 ~~s~f~~l~ 1423 (1428)
+...+.+.+
T Consensus 236 ~~~~~~~~~ 244 (250)
T PRK14247 236 PRHELTEKY 244 (250)
T ss_pred CccHHHHHH
Confidence 554454433
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=362.54 Aligned_cols=206 Identities=29% Similarity=0.447 Sum_probs=174.4
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 469999999999999999999999999999999999999999999999999976543 4678999
Q ss_pred EeCCccccC-CcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||+|.+|+ .|+++|+..... .+.++..+ ...+.++.+|++........+||||||||++|||||+++|++
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998886 599999964311 11111111 123444555776666666778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
|||||||++||+++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998864 37899999999998876 8999999999998865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=352.51 Aligned_cols=191 Identities=31% Similarity=0.390 Sum_probs=162.8
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--------cEEE
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAY 676 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--------~i~y 676 (1428)
.+.+++++.+|.. ..+|+|+||+|++||+++|+|||||||||||++|.|...|++|+|.++| .+||
T Consensus 3 ~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEE
Confidence 4678888888864 3459999999999999999999999999999999999999999999976 5899
Q ss_pred EcCCCCCCcc-cHHHHHhcCCCCC-------hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHH
Q 000553 677 VPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748 (1428)
Q Consensus 677 ~~Q~p~l~~~-ti~~nI~~g~~~~-------~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARal 748 (1428)
|+|++-|+.- ||+|||.||-+.. +++.++.++..+|...-+..| ..||||||||||||||+
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHH
Confidence 9999988875 9999999986541 346777888888876555555 48999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeC--CeEE
Q 000553 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDK--GQVK 812 (1428)
Q Consensus 749 y~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~--G~i~ 812 (1428)
..+|++|||||||+|||+.|..++.+.++.-....++|+++|||+++..- -+|||++|.+ |+|.
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999998887744332345689999999998854 5999999998 4553
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=374.76 Aligned_cols=219 Identities=25% Similarity=0.370 Sum_probs=184.3
Q ss_pred cEEEEEEEEEECCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC--------
Q 000553 1191 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN-------- 1259 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~-------- 1259 (1428)
.|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997532 269999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChHhHhcceEEEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCc-
Q 000553 1260 ----------------TPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE- 1317 (1428)
Q Consensus 1260 ----------------i~~~~lR~~i~~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLd- 1317 (1428)
.+...+|++++||||+| .+|..||++|+.+.. ..+.+++.+. ..+.++.+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~ 156 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELVGLDE 156 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHcCCCh
Confidence 13456789999999987 678889999997532 1233333221 22344445775
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEE
Q 000553 1318 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEIL 1395 (1428)
Q Consensus 1318 t~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~ 1395 (1428)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||+
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 45667778999999999999999999999999999999999999999999998764 48999999999998765 89999
Q ss_pred EEeCCeEEEecChhHHhcc
Q 000553 1396 ILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1396 Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|++|++++.|+++++.++
T Consensus 237 vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEECCEEEEECCHHHHhcC
Confidence 9999999999999999875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=364.15 Aligned_cols=206 Identities=29% Similarity=0.390 Sum_probs=175.3
Q ss_pred EEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh----H
Q 000553 1192 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD----L 1265 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~----l 1265 (1428)
|+++||+++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996531 46999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcceEEEeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1266 RGRFAVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1266 R~~i~~VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
|++++|+||+|.+|++ |+++|+..... ....+. ...+.+.++.+|++........+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 6789999999999987 99999965321 111111 11234455556777767777789999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhhcCEEEEEeCCeE
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1402 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1402 (1428)
+++|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999988754 7999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=371.90 Aligned_cols=220 Identities=23% Similarity=0.379 Sum_probs=187.7
Q ss_pred cEEEEEEEEEECCC-CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1191 LIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 58999999999743 24699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1270 AVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1270 ~~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
+|+||+| .++..|+.+|+.+.. ..+++++.+. ..+.++.+|++.........||||||||++|||||+++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR-----VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 9999998 467789999997431 1233332211 12233333555455556678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccC
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|++++++++.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999987653 79999999999999889999999999999999999998643
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=379.77 Aligned_cols=226 Identities=23% Similarity=0.386 Sum_probs=189.3
Q ss_pred cEEEEEEEEEECCC-----------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC
Q 000553 1191 LIEFQNVTMRYKPS-----------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1259 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~-----------~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~ 1259 (1428)
.++++|++++|+.. ...+++||||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999631 2468999999999999999999999999999999999999999999999999998
Q ss_pred CChH---hHhcceEEEeCCc--cccC-CcHHHhcCc----CC-CCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCC
Q 000553 1260 TPVR---DLRGRFAVVPQSP--FLFE-GSLRDNLDP----FH-MNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISF 1327 (1428)
Q Consensus 1260 i~~~---~lR~~i~~VpQdp--~lf~-gTIR~NLdp----~~-~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~L 1327 (1428)
++.+ .+|++++||+|+| .+++ .||.+|+.. +. ..+.++..+. ..+.++.+|++ .........|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCChHHhcCCcccC
Confidence 8754 4678999999999 4774 699999852 11 1233333221 12344445663 3456677789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEE
Q 000553 1328 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVE 1404 (1428)
Q Consensus 1328 SgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1404 (1428)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987643 7899999999999986 89999999999999
Q ss_pred ecChhHHhccCCcHHHH
Q 000553 1405 QGNPQTLLQDECSVFSS 1421 (1428)
Q Consensus 1405 ~g~p~eLl~~~~s~f~~ 1421 (1428)
.|+++++++++...|.+
T Consensus 243 ~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 243 LGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EcCHHHHHcCCCCHHHH
Confidence 99999999876545544
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=366.21 Aligned_cols=220 Identities=22% Similarity=0.371 Sum_probs=187.5
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH-hcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1269 (1428)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999964 469999999999999999999999999999999999999999999999999988776543 5679
Q ss_pred EEEeCCccccCC-cHHHhcCcCCCCChHHH-------HHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKI-------WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~~~d~ei-------~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
+++||++.+|++ |+++|+....... ..+ ........+.+.++.+|++.........||||||||++||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRD-KSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcc-cccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999987 9999997532110 000 0001111234455555777767777789999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
+++|++|+|||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999987678999999999999976 89999999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=366.01 Aligned_cols=216 Identities=25% Similarity=0.413 Sum_probs=185.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH-hcceE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1270 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1270 (1428)
++++||+++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999964 469999999999999999999999999999999999999999999999999988776553 57899
Q ss_pred EEeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
++||++.+|++ |+++|+..... ...++.. ..+.+.++.+|++........+||+|||||++||||++.+|+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999987 99999964321 1111111 123445555678777777778999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 999999999999999999999998764 47899999999988776 899999999999999999998753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=381.68 Aligned_cols=221 Identities=25% Similarity=0.444 Sum_probs=189.6
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
..++++|++++|+. .++|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++...+.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 46999999999964 4699999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
++|+|++.+|+. ||++|+.+.-. .++.++.+ .+.+.++.+|++.........||||||||++|||||+++|
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999976 99999975321 22222211 1223344446666666677789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f 1419 (1428)
++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++.+++...|
T Consensus 164 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~ 240 (375)
T PRK09452 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240 (375)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 99999999999999999999999988653 7999999999999765 89999999999999999999998876555
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=371.26 Aligned_cols=227 Identities=26% Similarity=0.343 Sum_probs=189.3
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH---hHhc
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRG 1267 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~ 1267 (1428)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999876543 4578
Q ss_pred ceEEEeCCccccCC-cHHHhcCcC----CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1268 RFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1268 ~i~~VpQdp~lf~g-TIR~NLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
+++|+||++.+|++ |+++|+.+. ...+.++.. ....+.++.+|++.........||||||||++|||||+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 89999999999987 999998642 111211111 11223344456665556666789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f 1419 (1428)
++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++.+++....
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 239 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRV 239 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCcHHH
Confidence 99999999999999999999999999987643 7899999999999876 89999999999999999999987654444
Q ss_pred HHHHH
Q 000553 1420 SSFVR 1424 (1428)
Q Consensus 1420 ~~l~~ 1424 (1428)
+.++.
T Consensus 240 ~~~~~ 244 (269)
T PRK11831 240 RQFLD 244 (269)
T ss_pred HHHHH
Confidence 55543
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=364.55 Aligned_cols=227 Identities=26% Similarity=0.384 Sum_probs=189.3
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC--------h
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--------V 1262 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~--------~ 1262 (1428)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 4899999999964 36999999999999999999999999999999999999999999999999987542 3
Q ss_pred HhHhcceEEEeCCccccC-CcHHHhcCcC----CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1337 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~-gTIR~NLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1337 (1428)
..+|++++++||+|.+|+ .|+++|+... .....++..+ ...+.++.+|++.........||||||||++|
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKVGLAGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCcchhhCChhhCChHHHHHHHH
Confidence 467889999999999886 5999999642 1112211111 12345555677766677778999999999999
Q ss_pred HHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1338 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1338 ARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
||||+.+|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 156 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 235 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999998764 47899999999999976 8999999999999999999998654
Q ss_pred C-cHHHHHHH
Q 000553 1416 C-SVFSSFVR 1424 (1428)
Q Consensus 1416 ~-s~f~~l~~ 1424 (1428)
. ...+.++.
T Consensus 236 ~~~~~~~~~~ 245 (250)
T PRK11264 236 QQPRTRQFLE 245 (250)
T ss_pred CCHHHHHHHH
Confidence 3 23344443
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=364.77 Aligned_cols=221 Identities=23% Similarity=0.360 Sum_probs=186.9
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC--------
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT-------- 1260 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i-------- 1260 (1428)
.+.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999964 4699999999999999999999999999999999999999999999999998642
Q ss_pred -----ChHhHhcceEEEeCCccccCC-cHHHhcCcCC----CCChHHHHHHHHHccHHHHHHhCCCchhh-hcCCCCCCh
Q 000553 1261 -----PVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSV 1329 (1428)
Q Consensus 1261 -----~~~~lR~~i~~VpQdp~lf~g-TIR~NLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v-~e~G~~LSg 1329 (1428)
....+|++++|+||+|.+|++ |+++|+.... ...+.+.. ..+.+.++.+|++... +.....||+
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHcCCChhhhhCCcccCCH
Confidence 134678899999999999985 9999996421 11211111 1123445555776554 566778999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecC
Q 000553 1330 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1407 (1428)
Q Consensus 1330 GQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~ 1407 (1428)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998764 48999999999999987 89999999999999999
Q ss_pred hhHHhccCC
Q 000553 1408 PQTLLQDEC 1416 (1428)
Q Consensus 1408 p~eLl~~~~ 1416 (1428)
++++.+.+.
T Consensus 236 ~~~~~~~~~ 244 (257)
T PRK10619 236 PEQLFGNPQ 244 (257)
T ss_pred HHHhhhCcc
Confidence 999986543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=348.10 Aligned_cols=196 Identities=29% Similarity=0.399 Sum_probs=167.7
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.+++++|+.+|+. ..||+||||+|++||.|+|+||||||||||++++.|+.+|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999976 5799999999999999999999999999999999999999999999999988432 45799
Q ss_pred EEeCCccccCC-cHHHhcCcCCCC---Ch----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHMN---DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~~~---~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
||+|++.||+- ||++|+...-+. +. +...+.|+.+ ||...-+..+..||||||||++|||||+
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~V---------gL~~~~~~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELV---------GLAGFEDKYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHc---------CCcchhhcCccccChHHHHHHHHHHHHh
Confidence 99999999997 999998654222 11 2233444444 5555556677789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeC--CeE
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDH--GHL 1402 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~--G~i 1402 (1428)
.+|+||+||||.++||..|...+|+-+.+.. .++||++|||+.+.... +|||+||.+ |+|
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999887764 36999999999998665 799999999 555
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=368.27 Aligned_cols=223 Identities=27% Similarity=0.389 Sum_probs=185.1
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1263 (1428)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 5899999999964 469999999999999999999999999999999999997 479999999999864 3455
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCCC---CCh-----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---NDD-----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~~---~~d-----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
.+|+.++++||+|.+|++|+++|+.+... ..+ +++.++++.+++++. .....+....+||+|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE-----TKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc-----hHHHhccChhhCCHHHHHHH
Confidence 67889999999999999999999975311 111 122333333333210 01234556678999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||||++++|++|||||||++||+++.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++...
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999987678999999999999876 899999999999999999999876
Q ss_pred CCcHHH
Q 000553 1415 ECSVFS 1420 (1428)
Q Consensus 1415 ~~s~f~ 1420 (1428)
+.-.|.
T Consensus 237 ~~~~~~ 242 (251)
T PRK14251 237 PKKQIT 242 (251)
T ss_pred CCCHHH
Confidence 543343
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=363.53 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=186.4
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC--ChHhHhcce
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT--PVRDLRGRF 1269 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i--~~~~lR~~i 1269 (1428)
++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 4699999999999999999999999999999999999999999999999999764 345678899
Q ss_pred EEEeCCccccC-CcHHHhcCcCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1270 AVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1270 ~~VpQdp~lf~-gTIR~NLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
+|+||++.+|. .|+++|+.... ..+..+..+ ...+.++.+|++.........||+|||||++||||++++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 99999999886 59999996431 112222111 123455556787777777789999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
|++|+|||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999998764 47999999999999976 8999999999999999999998654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=368.88 Aligned_cols=220 Identities=23% Similarity=0.377 Sum_probs=187.0
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CCh
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPV 1262 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~--i~~ 1262 (1428)
..|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999953 469999999999999999999999999999999999997 579999999999864 345
Q ss_pred HhHhcceEEEeCCccccCCcHHHhcCcCC----CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~gTIR~NLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1334 (1428)
..+|+.++++||+|.+|++|+++|+.... ..++ +++.++++.+++.+.+ +...+..+..||+|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-----KDDLHKSALTLSGGQQQR 171 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-----hhhhcCCcccCCHHHHHH
Confidence 67789999999999999999999996531 1111 2233444444443221 234566777999999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
++||||++++|++|||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999866 89999999999999999999987
Q ss_pred cCC
Q 000553 1414 DEC 1416 (1428)
Q Consensus 1414 ~~~ 1416 (1428)
.+.
T Consensus 252 ~~~ 254 (267)
T PRK14237 252 NPK 254 (267)
T ss_pred CCC
Confidence 543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=365.27 Aligned_cols=217 Identities=27% Similarity=0.379 Sum_probs=189.9
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcc
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1268 (1428)
.+.|+++|++++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 4579999999852 4699999999999999999999999999999999999999999999998 3
Q ss_pred eEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1269 i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
++|+||++.+|++|+++|+.+.....+.++.++++.+++.+.+..+ +.++.+++.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999865434445566778888888877766 67788888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHH-HHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000553 1347 VLCLDECTANVDAQTASILQNA-ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1423 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~-i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~ 1423 (1428)
||||||||++||+++...+.+. ++...++.|||+|||+++.+..||+|++|++|++++.|+++++.+.. +.|.+.+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-~~~~~~~ 256 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLR-PDFSSKL 256 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcc-hHHHHHH
Confidence 9999999999999999888764 45555689999999999999889999999999999999999998643 3455433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=348.84 Aligned_cols=178 Identities=33% Similarity=0.566 Sum_probs=166.2
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+...+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975434699999999999999999999999999999999999999999999999998766 5678899999
Q ss_pred EeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000553 1272 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351 (1428)
Q Consensus 1272 VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLD 1351 (1428)
+||+|.+|++|+++|+ ..+||+|||||++||||++++|++||||
T Consensus 80 ~~q~~~~~~~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~lllD 123 (178)
T cd03247 80 LNQRPYLFDTTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPIVLLD 123 (178)
T ss_pred EccCCeeecccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999997 3479999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCeEEEec
Q 000553 1352 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1352 EaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g 1406 (1428)
|||++||.++.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 124 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 124 EPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999998877789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=361.58 Aligned_cols=209 Identities=28% Similarity=0.442 Sum_probs=176.7
Q ss_pred EEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1192 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999997432 269999999999999999999999999999999999999999999999999976 345678899
Q ss_pred EEEeCCccccCC-cHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
+++||+|.+|++ |+++|+.... ..+.++..+ ...+.++.+|++........+||||||||++||||++++|
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999985321 112222111 1233444456666666677789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999998764 47999999999999876 7999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=384.22 Aligned_cols=220 Identities=28% Similarity=0.393 Sum_probs=187.2
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 4699999999999999999999999999999999999999999999999999876653 56899
Q ss_pred EEeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
||||++.+|+. |+++|+.+... .+.++..+ ...+.++.+|++.........||||||||++|||||+++|+
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999976 99999975321 22222111 12334444566665666667899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f 1419 (1428)
+||||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++..++...|
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 9999999999999999999999987643 7899999999998875 89999999999999999999998766544
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=361.46 Aligned_cols=207 Identities=25% Similarity=0.383 Sum_probs=175.7
Q ss_pred EEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh---Hh
Q 000553 1192 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1266 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1266 (1428)
++++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996432 46999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -cceEEEeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1267 -GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1267 -~~i~~VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
++++|+||+|.+|+ .|+++|+.... ..+..+.. + ...+.++.+|++.........||||||||++||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~---~--~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK---E--RAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH---H--HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 68999999999986 59999996421 11211111 1 123455556777667777778999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeCCeEE
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLV 1403 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~iv 1403 (1428)
+++|+||||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+..||+|++|++|+++
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999998764 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=374.22 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=187.1
Q ss_pred cEEEEEEEEEECCC--------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh
Q 000553 1191 LIEFQNVTMRYKPS--------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1262 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~--------~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~ 1262 (1428)
.|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 58999999999631 2469999999999999999999999999999999999999999999999999988864
Q ss_pred ---HhHhcceEEEeCCcc--ccCC-cHHHhcCc----CCCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhH
Q 000553 1263 ---RDLRGRFAVVPQSPF--LFEG-SLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQ 1331 (1428)
Q Consensus 1263 ---~~lR~~i~~VpQdp~--lf~g-TIR~NLdp----~~~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQ 1331 (1428)
..+|+++++|||||. |++. ||.+|+.. .......+. +....+.++.+||+. ........|||||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 356789999999994 5554 89888742 111122111 112234445556643 3456677899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecCh
Q 000553 1332 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1332 rQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p 1408 (1428)
|||++|||||+.+|++||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987643 8999999999999986 899999999999999999
Q ss_pred hHHhccCCcHHHH
Q 000553 1409 QTLLQDECSVFSS 1421 (1428)
Q Consensus 1409 ~eLl~~~~s~f~~ 1421 (1428)
+++++++...|.+
T Consensus 240 ~~~~~~p~hpyt~ 252 (327)
T PRK11308 240 EQIFNNPRHPYTQ 252 (327)
T ss_pred HHHhcCCCCHHHH
Confidence 9999876555554
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=367.28 Aligned_cols=220 Identities=27% Similarity=0.413 Sum_probs=183.9
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC---CCC--CCceEEECCeeCCCC--ChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPI--CGGQILVDGLNIINT--PVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl---~~~--~~G~I~IDG~di~~i--~~~ 1263 (1428)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999964 4699999999999999999999999999999999997 454 589999999999754 346
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCC---CC-Ch----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~---~~-~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
.+|++++|+||+|.+|++|+++|+.... .. .. +++.++++.+++.+. ++......+.+||||||||+
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE-----VKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc-----hhhhhhCCcccCCHHHHHHH
Confidence 7788999999999999999999996421 11 11 123333333333211 12345666778999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999999988778999999999999865 899999999999999999999876
Q ss_pred CCc
Q 000553 1415 ECS 1417 (1428)
Q Consensus 1415 ~~s 1417 (1428)
+..
T Consensus 236 ~~~ 238 (250)
T PRK14245 236 PEK 238 (250)
T ss_pred CCC
Confidence 543
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=364.76 Aligned_cols=218 Identities=30% Similarity=0.487 Sum_probs=186.0
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC----------
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---------- 1261 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~---------- 1261 (1428)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 46999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHhHhcceEEEeCCccccC-CcHHHhcCcCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000553 1262 ---VRDLRGRFAVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1333 (1428)
Q Consensus 1262 ---~~~lR~~i~~VpQdp~lf~-gTIR~NLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1333 (1428)
...+|++++++||++.+|+ .|+++|+.... ....++..+ .+.+.++.+|++.........||+||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMVGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCChhHhhcChhhcCHHHHH
Confidence 2467889999999999886 69999996421 112211111 2344555557776677777889999999
Q ss_pred HHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhH
Q 000553 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1334 rl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~e 1410 (1428)
|++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.+ |||+++|++|++++.|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987653 7899999999999965 89999999999999999999
Q ss_pred HhccCC
Q 000553 1411 LLQDEC 1416 (1428)
Q Consensus 1411 Ll~~~~ 1416 (1428)
+.+++.
T Consensus 234 ~~~~~~ 239 (252)
T TIGR03005 234 IFRQPK 239 (252)
T ss_pred HhcCCC
Confidence 987654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=371.48 Aligned_cols=220 Identities=28% Similarity=0.460 Sum_probs=188.7
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC---ceEEECCeeCCCCChHhHh
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRDLR 1266 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~---G~I~IDG~di~~i~~~~lR 1266 (1428)
+.|+++|++++|++...++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999997544469999999999999999999999999999999999999987 8999999999887777889
Q ss_pred cceEEEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1267 GRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1267 ~~i~~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
++++|+||+| .+++.|+++|+.+.. ..+++++.+ ...+.++.+|++...+....+||+|||||++|||||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999999998 466789999997431 123322211 122334444666666667779999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhcc
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+++|++|||||||++||..+.+.+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|++++++.+
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999988653 7899999999999988999999999999999999998764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=371.96 Aligned_cols=218 Identities=30% Similarity=0.463 Sum_probs=185.1
Q ss_pred EEEEEEEEEECCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----ChHh
Q 000553 1192 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRD 1264 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i----~~~~ 1264 (1428)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 3699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcceEEEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000553 1265 LRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1265 lR~~i~~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LA 1338 (1428)
+|++++|+||+| .+|+.|+++|+.+.. ..++++..+. ..+.++.+|++. ........||||||||++||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 888999999998 578899999996421 1223222211 233445557753 45666778999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|||+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998764 37899999999999876 899999999999999999998764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=365.94 Aligned_cols=220 Identities=29% Similarity=0.439 Sum_probs=185.3
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--CCh
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1262 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1262 (1428)
|.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999964 3699999999999999999999999999999999999863 69999999999875 455
Q ss_pred HhHhcceEEEeCCccccCCcHHHhcCcCCC----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~----~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1334 (1428)
..+|++++|+||+|.+|+.|+++|+..... .+ ++++.++++.+++.+. +....+..+.+||+|||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE-----VKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-----hHHHHhcCCCCCCHHHHHH
Confidence 678999999999999999999999964311 11 1223333444433221 1234456677899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999887668999999999998876 89999999999999999999987
Q ss_pred cCC
Q 000553 1414 DEC 1416 (1428)
Q Consensus 1414 ~~~ 1416 (1428)
++.
T Consensus 235 ~~~ 237 (250)
T PRK14240 235 NPK 237 (250)
T ss_pred CCC
Confidence 654
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=354.50 Aligned_cols=197 Identities=30% Similarity=0.473 Sum_probs=178.5
Q ss_pred EEEEEEEEEECCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcc
Q 000553 1192 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1268 (1428)
|+++||+++|++.. +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 4699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1269 i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
++|+||+|.+|++|+++|+.+....++++.+++++.+++.+.+..+ |+++.+++.+..||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999876555566778888888988888877 88998988889999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHH-HHHHhc-CCcEEEEeccChhhhhhcCEEEEEeCCe
Q 000553 1347 VLCLDECTANVDAQTASILQN-AISSEC-KGMTVITIAHRISTVLNMDEILILDHGH 1401 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~-~i~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1401 (1428)
+++|||||++||+++.+.+.+ .+++.. ++.|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999877766 566553 4689999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=368.46 Aligned_cols=219 Identities=24% Similarity=0.412 Sum_probs=186.9
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++|++++|++..+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754456999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEeCCcc-cc-CCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1271 VVPQSPF-LF-EGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1271 ~VpQdp~-lf-~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
++||+|. +| ..|+++|+..... ...++..+ .+.+.++.+|++........+||+|||||++||||++++|
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999994 44 5589999864311 12222111 1223344446655556667789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhcc
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++..+
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999988643 7899999999999988999999999999999999999765
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=367.56 Aligned_cols=223 Identities=23% Similarity=0.375 Sum_probs=185.9
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCC--Ch
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PV 1262 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~i--~~ 1262 (1428)
..|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 36999999999963 4699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HhHhcceEEEeCCccccCCcHHHhcCcCC---CCChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~gTIR~NLdp~~---~~~d~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
..+|+.++|+||++.+|+.|+++|+.... ..+.+ ++.++++.+++.+. ++.........||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE-----TSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc-----hhhhhcCChhhCCHHHHHHH
Confidence 56788999999999999999999996421 12222 23334444433211 12334556678999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|||||+++|+||||||||++||.++.+.+.+.|++..+++|||+|||+++.+.+ ||||++|++|++++.|+|+++.++
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999887668999999999999876 899999999999999999999876
Q ss_pred CCcHH
Q 000553 1415 ECSVF 1419 (1428)
Q Consensus 1415 ~~s~f 1419 (1428)
+...+
T Consensus 244 ~~~~~ 248 (258)
T PRK14268 244 PREKS 248 (258)
T ss_pred CCCHH
Confidence 54433
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=373.23 Aligned_cols=221 Identities=24% Similarity=0.373 Sum_probs=185.4
Q ss_pred CccEEEEEEEEEECCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC----C-
Q 000553 1189 QGLIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----T- 1260 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~----i- 1260 (1428)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 47799999999996532 259999999999999999999999999999999999999999999999999852 2
Q ss_pred ChHhHhcceEEEeCCc--cccCCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHH
Q 000553 1261 PVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1261 ~~~~lR~~i~~VpQdp--~lf~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQr 1334 (1428)
+...+|++++|+||+| .+|+.|+++|+.+... ...++..+. +.+.++.+|++ ...+.....||+|||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLVQLPEDYVKRSPFELSGGQKRR 158 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 4567888999999998 4678899999964321 222222211 22344444773 45566677899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHH
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eL 1411 (1428)
++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998764 37899999999998865 899999999999999999998
Q ss_pred hcc
Q 000553 1412 LQD 1414 (1428)
Q Consensus 1412 l~~ 1414 (1428)
.++
T Consensus 239 ~~~ 241 (289)
T PRK13645 239 FSN 241 (289)
T ss_pred hcC
Confidence 764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=366.43 Aligned_cols=226 Identities=24% Similarity=0.406 Sum_probs=188.2
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCC--ChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1263 (1428)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999998753 345
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCC----CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
.+|++++++||+|.+|+.|+++|+.... ...+ +++.++++..++.+.+ +...+....+||+|||||+
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-----KSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-----HHHHhCChhhcCHHHHHHH
Confidence 6788999999999999999999997421 1111 2233344444432211 2335566778999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||||++++|+||||||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999999999987778999999999998765 899999999999999999999876
Q ss_pred CCcHHHHHH
Q 000553 1415 ECSVFSSFV 1423 (1428)
Q Consensus 1415 ~~s~f~~l~ 1423 (1428)
+...|.+.+
T Consensus 236 ~~~~~~~~~ 244 (250)
T PRK14262 236 PKNKLTEEY 244 (250)
T ss_pred CCChHHHHH
Confidence 544455443
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=367.24 Aligned_cols=221 Identities=26% Similarity=0.399 Sum_probs=184.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCCCC--hHh
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINTP--VRD 1264 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~i~--~~~ 1264 (1428)
-+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhcceEEEeCCccccCCcHHHhcCcCC---CC--C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1265 LRGRFAVVPQSPFLFEGSLRDNLDPFH---MN--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1265 lR~~i~~VpQdp~lf~gTIR~NLdp~~---~~--~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
+|++++|+||+|.+|++|+++|+.... .. . ++++.++++..++.+. +.+.++..+.+||+|||||+
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-----LGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-----hhhHhhcChhhCCHHHHHHH
Confidence 788999999999999999999986421 11 1 1223333333333211 11245566778999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999987678999999999999876 899999999999999999999987
Q ss_pred CCcHH
Q 000553 1415 ECSVF 1419 (1428)
Q Consensus 1415 ~~s~f 1419 (1428)
+...+
T Consensus 239 ~~~~~ 243 (251)
T PRK14244 239 PQSSK 243 (251)
T ss_pred CCChH
Confidence 65544
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=368.68 Aligned_cols=220 Identities=27% Similarity=0.436 Sum_probs=184.1
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CCh
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPV 1262 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~--i~~ 1262 (1428)
..|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 20 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 20 HILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred ceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 36999999999964 469999999999999999999999999999999999865 789999999999865 344
Q ss_pred HhHhcceEEEeCCccccCCcHHHhcCcCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~gTIR~NLdp~~----~~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1334 (1428)
..+|++++|+||+|.+|++|+++|+.... ... ++.+.++++..++.+. +....+....+||||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-----VKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-----hHHHHhcCcccCCHHHHHH
Confidence 56788999999999999999999986421 101 1223333433333211 1233456677899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++..
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 252 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999998875 89999999999999999999987
Q ss_pred cCC
Q 000553 1414 DEC 1416 (1428)
Q Consensus 1414 ~~~ 1416 (1428)
++.
T Consensus 253 ~~~ 255 (268)
T PRK14248 253 SPK 255 (268)
T ss_pred CCC
Confidence 643
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=366.16 Aligned_cols=219 Identities=22% Similarity=0.379 Sum_probs=183.9
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCeeCCCC--ChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIINT--PVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~--~---~~G~I~IDG~di~~i--~~~ 1263 (1428)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 5899999999964 369999999999999999999999999999999999953 6 499999999998653 345
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcC----CCCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPF----HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~----~~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
.+|+.++++||+|.+|+.|+++|+... +...+ +++.++++.+++.+. +....+....+||+|||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-----VKDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh-----HHHHHhcCcccCCHHHHHHH
Confidence 678899999999999999999998642 11111 223334444443221 12345566778999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|||||+++|++|||||||++||.++.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999987667999999999998876 899999999999999999999876
Q ss_pred CC
Q 000553 1415 EC 1416 (1428)
Q Consensus 1415 ~~ 1416 (1428)
+.
T Consensus 238 ~~ 239 (252)
T PRK14239 238 PK 239 (252)
T ss_pred CC
Confidence 54
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=382.50 Aligned_cols=220 Identities=26% Similarity=0.416 Sum_probs=189.7
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++|++++|+. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccc-cCCcHHHhcCcCCC-----C---C---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000553 1271 VVPQSPFL-FEGSLRDNLDPFHM-----N---D---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1271 ~VpQdp~l-f~gTIR~NLdp~~~-----~---~---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1338 (1428)
++||++.+ |+.|+++|+..... . . ++.+.++++.++ +..........||||||||++||
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vg---------l~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTG---------VAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcC---------CchhhcCChhhCCHHHHHHHHHH
Confidence 99999987 56799999965321 1 1 223445555554 44334445568999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
|||+++|+||||||||++||+.+...+.+.|++.. ++.|||+++|+++.+.. ||||++|++|++++.|+|++++..+
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~- 230 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD- 230 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcH-
Confidence 99999999999999999999999999999998875 47899999999999965 8999999999999999999998743
Q ss_pred cHHHHHH
Q 000553 1417 SVFSSFV 1423 (1428)
Q Consensus 1417 s~f~~l~ 1423 (1428)
.+.+++
T Consensus 231 -~l~~~~ 236 (402)
T PRK09536 231 -TLRAAF 236 (402)
T ss_pred -HHHHHh
Confidence 455544
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=366.76 Aligned_cols=228 Identities=25% Similarity=0.383 Sum_probs=186.8
Q ss_pred cEEEEEEEEEECCC-------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH
Q 000553 1191 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~ 1263 (1428)
.|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 35799999999999999999999999999999999999999999999999999877654
Q ss_pred h---HhcceEEEeCCcc--ccC-CcHHHhcCcC----CCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHH
Q 000553 1264 D---LRGRFAVVPQSPF--LFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQR 1332 (1428)
Q Consensus 1264 ~---lR~~i~~VpQdp~--lf~-gTIR~NLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQr 1332 (1428)
. +|++++|+||+|. +++ .|+++|+... .....++ ....+.+.++.+|++ ...+..+..||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~ 156 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMVGLRSEDADKLPRQLSGGQL 156 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHcCCChhhhhCChhhCCHHHH
Confidence 3 6788999999983 443 6999998521 1111111 111233445555775 345667778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChh
Q 000553 1333 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1409 (1428)
Q Consensus 1333 Qrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~ 1409 (1428)
||++|||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 157 QRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999987643 7899999999999985 8999999999999999999
Q ss_pred HHhccCCcHHHHHH
Q 000553 1410 TLLQDECSVFSSFV 1423 (1428)
Q Consensus 1410 eLl~~~~s~f~~l~ 1423 (1428)
+++..++...+.+.
T Consensus 237 ~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 237 QLLSFKHPAGRNLQ 250 (265)
T ss_pred HHcCCCCHHHHHHH
Confidence 99875442333343
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=366.65 Aligned_cols=221 Identities=24% Similarity=0.363 Sum_probs=186.6
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CC
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TP 1261 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~--i~ 1261 (1428)
...++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 346999999999964 369999999999999999999999999999999999997 699999999999853 35
Q ss_pred hHhHhcceEEEeCCccccCCcHHHhcCcCC---CCChH-----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000553 1262 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDDL-----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1333 (1428)
Q Consensus 1262 ~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~---~~~d~-----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1333 (1428)
...+|++++|+||+|.+|..|+++|+.+.. ..+++ .+.++++..++.+ ++....+..+..|||||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-----ELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-----hHHHHHhcCcccCCHHHHH
Confidence 567788999999999999999999996421 12221 1223333332211 2334456677789999999
Q ss_pred HHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1334 rl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887778999999999999876 8999999999999999999998
Q ss_pred ccCC
Q 000553 1413 QDEC 1416 (1428)
Q Consensus 1413 ~~~~ 1416 (1428)
.++.
T Consensus 255 ~~~~ 258 (271)
T PRK14238 255 SNPS 258 (271)
T ss_pred cCCC
Confidence 7654
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=366.24 Aligned_cols=221 Identities=24% Similarity=0.366 Sum_probs=184.9
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCeeCCC--CChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIIN--TPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~--~---~~G~I~IDG~di~~--i~~~ 1263 (1428)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 369999999999999999999999999999999999997 3 58999999999864 4456
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCCC----CChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~~----~~d~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
.+|++++|+||+|.+|++|+++|+.+... .++++ +.++++..++.+.+ .......+.+||+|||||+
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-----KDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hhhhhCCcccCCHHHHHHH
Confidence 77899999999999999999999964311 12222 22233333332111 2334566778999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||||++++|+||+|||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+|+++.++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 9999999999999999999999999999999999987678999999999999876 899999999999999999999876
Q ss_pred CCcH
Q 000553 1415 ECSV 1418 (1428)
Q Consensus 1415 ~~s~ 1418 (1428)
+...
T Consensus 245 ~~~~ 248 (259)
T PRK14274 245 PDDQ 248 (259)
T ss_pred CCCH
Confidence 5443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=356.76 Aligned_cols=202 Identities=30% Similarity=0.463 Sum_probs=174.1
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+. .++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999964 36999999999999 99999999999999999999999999999999999998776 778899999
Q ss_pred EeCCccccCC-cHHHhcCcCC---CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~---~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
+||+|.+|.+ |+++|+.... ..+. +++.++++.. |++.........||+|||||++||||+++
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELV---------NLGDRAKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---------CCHHHHhCchhhCCHHHHHHHHHHHHHhc
Confidence 9999999986 9999986421 1121 2233444444 44433444556799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999987767999999999999975 8999999999998865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=364.80 Aligned_cols=222 Identities=23% Similarity=0.367 Sum_probs=184.9
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCeeCCCC--C
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIINT--P 1261 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~--~---~~G~I~IDG~di~~i--~ 1261 (1428)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999963 469999999999999999999999999999999999986 4 689999999999754 3
Q ss_pred hHhHhcceEEEeCCccccC-CcHHHhcCcC----CCCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHH
Q 000553 1262 VRDLRGRFAVVPQSPFLFE-GSLRDNLDPF----HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1332 (1428)
Q Consensus 1262 ~~~lR~~i~~VpQdp~lf~-gTIR~NLdp~----~~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQr 1332 (1428)
...+|++++++||++.+|+ .|+++|+... ...+. +++.++++.+++.+.+ +...+..+.+||+|||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-----KDRLKSNAMELSGGQQ 154 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hHHhhCCcCcCCHHHH
Confidence 4567889999999999998 5999999642 11121 1223333333332211 1234456778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHH
Q 000553 1333 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1333 Qrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eL 1411 (1428)
||++||||++++|++|||||||++||..+.+.+.+.|++..++.|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999999865 899999999999999999999
Q ss_pred hccCCc
Q 000553 1412 LQDECS 1417 (1428)
Q Consensus 1412 l~~~~s 1417 (1428)
..++.-
T Consensus 235 ~~~~~~ 240 (252)
T PRK14256 235 FTTPEK 240 (252)
T ss_pred HhCCCc
Confidence 876543
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=368.23 Aligned_cols=221 Identities=25% Similarity=0.366 Sum_probs=183.2
Q ss_pred EEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH----hcc
Q 000553 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGR 1268 (1428)
Q Consensus 1193 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~ 1268 (1428)
.++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 56688888864 469999999999999999999999999999999999999999999999999988765543 468
Q ss_pred eEEEeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1269 FAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1269 i~~VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
++|+||+|.+|+ .|+++|+.... .....+..+ ...+.++.+|++..+.....+||+|||||++|||||+++
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE-----RAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999885 59999996421 111111111 122344444665555666678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~ 1420 (1428)
|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++++...|.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 257 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYV 257 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHH
Confidence 99999999999999999999999998764 37999999999999865 899999999999999999999876654443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=368.17 Aligned_cols=218 Identities=26% Similarity=0.415 Sum_probs=185.2
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++|++++|+.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999643 35999999999999999999999999999999999999999999999999998877788899999
Q ss_pred EEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1271 VVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1271 ~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
++||+| .+|+.|+++|+.... ..+.++..+ ...+.++.+|+..........||+|||||++|||||+.+|
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p 156 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP 156 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998 477889999996422 122222111 1223333445555555566789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhh-hcCEEEEEeCCeEEEecChhHHhcc
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
++|||||||++||+.+.+.+.+.+++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 157 ~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999987653 799999999999996 4899999999999999999999864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=357.43 Aligned_cols=204 Identities=31% Similarity=0.469 Sum_probs=174.0
Q ss_pred EEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEE
Q 000553 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1272 (1428)
Q Consensus 1193 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1272 (1428)
+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+....|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999975334699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred eCCcc--ccCCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1273 PQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1273 pQdp~--lf~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
||+|. +++.|+++|+..... .++.+..+ ...+.++.+|++.........||||||||++|||||+++|++
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99983 677899999965311 12221111 123344555776666677778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCe
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGH 1401 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1401 (1428)
|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999998764 47999999999999988 89999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=362.18 Aligned_cols=217 Identities=24% Similarity=0.410 Sum_probs=182.3
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh-Hhcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1269 (1428)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 5899999999964 46999999999999999999999999999999999999999999999999998887654 67889
Q ss_pred EEEeCCccccCC-cHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
+++||++.+|++ |+++|+..... .+..+..+. +.+.++.+ +++.........||+|||||++||||++++|+
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 999999999986 99999965321 122222211 12222223 24333444566899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||||++|++|++++.|+++++..+
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999998764 48999999999998765 899999999999999999999753
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=367.49 Aligned_cols=217 Identities=28% Similarity=0.470 Sum_probs=185.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC-hHhHhcceE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLRGRFA 1270 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~-~~~lR~~i~ 1270 (1428)
++++|++++|+++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 45999999999999999999999999999999999999999999999999998765 467788999
Q ss_pred EEeCCcc--ccCCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1271 VVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1271 ~VpQdp~--lf~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
++||+|. +++.|+++|+.+... .+..+..+ .+.+.++.+|++.........||+|||||++|||||+++|
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999985 567899999975321 12222211 1223344457766666777789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhcc
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||||||||++||+.+...+.+.|++.. +++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999998754 48999999999999988999999999999999999998764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=363.01 Aligned_cols=217 Identities=28% Similarity=0.444 Sum_probs=186.5
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh-Hhcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1269 (1428)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 4889999999964 46999999999999999999999999999999999999999999999999998877544 57889
Q ss_pred EEEeCCccccCC-cHHHhcCcCCCC----ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHMN----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~~----~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
+++||++.+|++ |+++|+...... +.++. .....+.++.+|++.........||+|||||++||||++++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAAN 155 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcC
Confidence 999999998885 999999754211 11111 12234556666887777777788999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999987754 48899999999987765 799999999999999999999764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=378.89 Aligned_cols=223 Identities=27% Similarity=0.424 Sum_probs=190.1
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcc
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1268 (1428)
...++++|++++|+. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+.+. .|++
T Consensus 17 ~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred CceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 346999999999964 469999999999999999999999999999999999999999999999999987764 4778
Q ss_pred eEEEeCCccccCC-cHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
++||+|++.+|+. ||+||+.+.- ..+..++.+ .+.+.++.+|++.........||||||||++|||||+++
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999999986 9999997532 122222221 123444555776666667778999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~ 1420 (1428)
|++|+||||||+||..+.+.+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+++..++...|-
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~ 246 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHHH
Confidence 99999999999999999999988777653 37999999999998765 899999999999999999999988776554
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=359.09 Aligned_cols=212 Identities=27% Similarity=0.431 Sum_probs=177.3
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-HHHhhcEEE
Confidence 578999999964 46999999999999999999999999999999999999999999999999987633 567889999
Q ss_pred EeCCccccCC-cHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||++.++++ |+++|+.... ..+..+..+ ...+.++.+|++.........||||||||++||||++.+|++
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998876 9999996421 111111111 122333344555444555568999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc-C-CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHH
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC-K-GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~-~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eL 1411 (1428)
|||||||++||+++.+.+.+.|++.. + ++|||+|+|+++.+.. ||||++|++|++++.|+++++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999998764 2 7899999999999876 899999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=360.77 Aligned_cols=219 Identities=25% Similarity=0.394 Sum_probs=185.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC------CCChHh
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII------NTPVRD 1264 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~------~i~~~~ 1264 (1428)
.++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999964 46999999999999999999999999999999999999999999999999874 123456
Q ss_pred HhcceEEEeCCccccCC-cHHHhcCcC--C--CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000553 1265 LRGRFAVVPQSPFLFEG-SLRDNLDPF--H--MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1339 (1428)
Q Consensus 1265 lR~~i~~VpQdp~lf~g-TIR~NLdp~--~--~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1339 (1428)
.|++++|+||+|.+|++ |+++|+..+ . ....++.. ....+.++.+|++..++....+||||||||++|||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 154 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIAR 154 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 78899999999999976 999999631 1 11222211 12344555667877777777899999999999999
Q ss_pred HHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1340 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1340 ALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
|++++|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 155 al~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~ 233 (242)
T PRK11124 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQPQT 233 (242)
T ss_pred HHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCccc
Confidence 9999999999999999999999999999998764 48999999999999976 89999999999999999999875443
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=376.14 Aligned_cols=226 Identities=19% Similarity=0.319 Sum_probs=182.7
Q ss_pred cEEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC----CCCceEEECCeeCCCCChHh
Q 000553 1191 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVRD 1264 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~----~~~G~I~IDG~di~~i~~~~ 1264 (1428)
.++++|++++|+... ..+|+||||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 479999999997532 359999999999999999999999999999999999997 48999999999999888766
Q ss_pred Hhc----ceEEEeCCcc--ccCC-cHHHhc----CcCCCCChHHHHHHHHHccHHHHHHhCCCc---hhhhcCCCCCChh
Q 000553 1265 LRG----RFAVVPQSPF--LFEG-SLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVG 1330 (1428)
Q Consensus 1265 lR~----~i~~VpQdp~--lf~g-TIR~NL----dp~~~~~d~ei~~aL~~~~l~~~i~~lgLd---t~v~e~G~~LSgG 1330 (1428)
+|+ ++++|||+|. +++. |+.+|+ ........++.. ....+.++.+||+ ..++..+..||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~-----~~~~~~L~~~gL~~~~~~l~~~p~~LSgG 157 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRR-----QRAIDLLNQVGIPDPASRLDVYPHQLSGG 157 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 543 6999999995 4432 665554 222111211111 1122333444553 3456677789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecC
Q 000553 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1407 (1428)
Q Consensus 1331 QrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~ 1407 (1428)
||||++|||||+.+|++||+||||++||..+...+.+.|++.. .+.|+|+|||+++.+.. ||||+||++|+|+|.|+
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 37899999999999964 89999999999999999
Q ss_pred hhHHhccCCcHHHH
Q 000553 1408 PQTLLQDECSVFSS 1421 (1428)
Q Consensus 1408 p~eLl~~~~s~f~~ 1421 (1428)
++++++++...|.+
T Consensus 238 ~~~~~~~p~hpyt~ 251 (326)
T PRK11022 238 AHDIFRAPRHPYTQ 251 (326)
T ss_pred HHHHhhCCCChHHH
Confidence 99999876555544
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=369.97 Aligned_cols=219 Identities=28% Similarity=0.486 Sum_probs=184.6
Q ss_pred cEEEEEEEEEECCCC---CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----ChH
Q 000553 1191 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i----~~~ 1263 (1428)
.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997432 4699999999999999999999999999999999999999999999999998653 245
Q ss_pred hHhcceEEEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHH
Q 000553 1264 DLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICL 1337 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~L 1337 (1428)
..|++++++||+| .+|+.|+++|+.+.. ..+.++..+ ...+.++.+|++ ........+||+|||||++|
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 6788999999998 577889999996321 122222211 123445555776 34566677999999999999
Q ss_pred HHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1338 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1338 ARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
||||+.+|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998764 47899999999999865 899999999999999999998764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=363.90 Aligned_cols=220 Identities=27% Similarity=0.383 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCeeCCCC--Ch
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINT--PV 1262 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~-----~G~I~IDG~di~~i--~~ 1262 (1428)
+.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 3 PKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred ceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 36899999999964 46999999999999999999999999999999999999997 69999999998653 44
Q ss_pred HhHhcceEEEeCCccccCCcHHHhcCcCCC----CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~----~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1334 (1428)
..+|++++|+||+|.+|+.|+++|+.+... ... +.+.++++..++++.+ ....+..+.+||+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-----KDNLHKSGLALSGGQQQR 155 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-----hhHhhCCcccCCHHHHHH
Confidence 577899999999999999999999975321 111 2233334444443322 234566777899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999887668999999999999987 69999999999999999999976
Q ss_pred cCC
Q 000553 1414 DEC 1416 (1428)
Q Consensus 1414 ~~~ 1416 (1428)
++.
T Consensus 236 ~~~ 238 (251)
T PRK14249 236 RPR 238 (251)
T ss_pred CCC
Confidence 543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=366.26 Aligned_cols=221 Identities=24% Similarity=0.355 Sum_probs=186.4
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--CCh
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1262 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1262 (1428)
+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 4699999999999999999999999999999999999985 48999999999864 345
Q ss_pred HhHhcceEEEeCCccccCCcHHHhcCcCC----CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~gTIR~NLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1334 (1428)
..+|++++++||+|.+|+.|+++|+.+.. ..++ +.+.++++.+++.+.+ ....+..+..||+|||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-----KDKLNKSALGLSGGQQQR 158 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----hhHhcCCcccCCHHHHHH
Confidence 67788999999999999999999996421 1121 2234555555543322 223455667899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEe-----CCeEEEecCh
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD-----HGHLVEQGNP 1408 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~-----~G~ive~g~p 1408 (1428)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||++++|+ +|++++.|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999987777999999999999976 79999997 5999999999
Q ss_pred hHHhccCCc
Q 000553 1409 QTLLQDECS 1417 (1428)
Q Consensus 1409 ~eLl~~~~s 1417 (1428)
+++.+++..
T Consensus 239 ~~~~~~~~~ 247 (259)
T PRK14260 239 TQIFSNPLD 247 (259)
T ss_pred HHHhcCCCC
Confidence 999876543
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=363.36 Aligned_cols=219 Identities=27% Similarity=0.401 Sum_probs=185.2
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCC--Ch
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PV 1262 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~i--~~ 1262 (1428)
..|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 3 IKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred cEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 36899999999964 4699999999999999999999999999999999999975 799999999999653 34
Q ss_pred HhHhcceEEEeCCccccCCcHHHhcCcCCC---C-Ch----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~---~-~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1334 (1428)
..+|++++|+||++.+|+.|+++|+.+... . +. +++.++++.+++.+.+ ....+.....||+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-----KDDLKKSALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-----hhHhhCCcccCCHHHHHH
Confidence 567889999999999999999999974321 1 11 2233444444432211 223455667899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
++||||++++|+||||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987767999999999999876 89999999999999999999986
Q ss_pred cC
Q 000553 1414 DE 1415 (1428)
Q Consensus 1414 ~~ 1415 (1428)
++
T Consensus 236 ~~ 237 (251)
T PRK14270 236 EP 237 (251)
T ss_pred CC
Confidence 54
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=361.92 Aligned_cols=211 Identities=27% Similarity=0.422 Sum_probs=179.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh-HhcceE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFA 1270 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i~ 1270 (1428)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 478999999974 36999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEeCCccccCC-cHHHhcCcCC-CC--ChHHHHHHHHHccHHHHHHhCC-CchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFH-MN--DDLKIWSVLEKCHVKEEVEAVG-LETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~-~~--~d~ei~~aL~~~~l~~~i~~lg-Ldt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
++||++.+|++ |+++|+.... .. .+++. ..+.++.++ ++........+||||||||++|||||+++|
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 9999996431 11 11111 112222222 444455666789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999988653 7899999999999986 8999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=372.87 Aligned_cols=216 Identities=28% Similarity=0.397 Sum_probs=183.5
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 4699999999999999999999999999999999999999999999999998754 356789999
Q ss_pred EEeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1271 VVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
|+||++.+++ .|+++|+..+. ..+..+..+. +.+.++.+|++.........||||||||++|||||+++|+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 59999996321 1222222221 1223344466555555666899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999998764 48899999999999976 899999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=363.63 Aligned_cols=223 Identities=23% Similarity=0.392 Sum_probs=188.9
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCCC--ChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--PVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~i--~~~ 1263 (1428)
.++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.+++.. +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999964 469999999999999999999999999999999999875 3899999999998753 466
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCC---CCCh-----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDD-----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~---~~~d-----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
.+|++++|+||+|.+|++|+++|+.... ...+ +++.++++.+++.+.+. ...+..+.+||+|||||+
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-----DKLDKSALGLSGGQQQRL 155 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-----HHHhCCcccCCHHHHHHH
Confidence 7899999999999999999999996431 1111 22444555555544332 224556678999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|||||+++|+||+|||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999999887 799999999999999999999877
Q ss_pred CCcHHH
Q 000553 1415 ECSVFS 1420 (1428)
Q Consensus 1415 ~~s~f~ 1420 (1428)
+.+.+.
T Consensus 236 ~~~~~~ 241 (250)
T PRK14266 236 PKDKRT 241 (250)
T ss_pred CCChHH
Confidence 655443
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=366.00 Aligned_cols=222 Identities=28% Similarity=0.400 Sum_probs=187.5
Q ss_pred CCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--C
Q 000553 1188 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--T 1260 (1428)
Q Consensus 1188 ~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~--i 1260 (1428)
..+.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 22 ~~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 22 EQTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 3457999999999964 3699999999999999999999999999999999999984 89999999999875 3
Q ss_pred ChHhHhcceEEEeCCccccCCcHHHhcCcCC---C-CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHH
Q 000553 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1332 (1428)
Q Consensus 1261 ~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~---~-~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQr 1332 (1428)
+...+|++++|+||++.+|++|+++|+.+.. . .. ++++.++++.+++.+.+ .+..+..+.+||+|||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-----KDRLHENAFGLSGGQQ 174 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-----HHHhhCCcccCCHHHH
Confidence 4567889999999999999999999996431 1 11 12234444444433221 1345566778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHH
Q 000553 1333 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1333 Qrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eL 1411 (1428)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..++.|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999987778999999999999875 899999999999999999999
Q ss_pred hccCC
Q 000553 1412 LQDEC 1416 (1428)
Q Consensus 1412 l~~~~ 1416 (1428)
.+++.
T Consensus 255 ~~~~~ 259 (272)
T PRK14236 255 FTSPA 259 (272)
T ss_pred hcCCC
Confidence 87543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=372.41 Aligned_cols=226 Identities=25% Similarity=0.402 Sum_probs=185.3
Q ss_pred cEEEEEEEEEECC--CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCeeCCCCChHhH
Q 000553 1191 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLNIINTPVRDL 1265 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~---~G~I~IDG~di~~i~~~~l 1265 (1428)
.++++|++++|+. +...+++||||+|++||.+||+|+||||||||+++|+|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 6999999999963 2246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----cceEEEeCCc--cccC-CcHHHhcC----cCCCCChHHHHHHHHHccHHHHHHhCCCc---hhhhcCCCCCChhH
Q 000553 1266 R----GRFAVVPQSP--FLFE-GSLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVGQ 1331 (1428)
Q Consensus 1266 R----~~i~~VpQdp--~lf~-gTIR~NLd----p~~~~~d~ei~~aL~~~~l~~~i~~lgLd---t~v~e~G~~LSgGQ 1331 (1428)
| ++|++||||| .+++ -|+.+|+. .....+.++..+ ...+.++.+||+ ..++..+..|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~-----~~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFE-----ESVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 3 4799999999 4555 37777762 222222222211 112223333553 23566778899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecCh
Q 000553 1332 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1332 rQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p 1408 (1428)
|||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987643 7899999999999975 899999999999999999
Q ss_pred hHHhccCCcHHHH
Q 000553 1409 QTLLQDECSVFSS 1421 (1428)
Q Consensus 1409 ~eLl~~~~s~f~~ 1421 (1428)
+++.+++...|.+
T Consensus 247 ~~i~~~p~~pyt~ 259 (330)
T PRK09473 247 RDVFYQPSHPYSI 259 (330)
T ss_pred HHHHhCCCCHHHH
Confidence 9999877655554
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=360.27 Aligned_cols=211 Identities=26% Similarity=0.419 Sum_probs=176.1
Q ss_pred EEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh---HhHh
Q 000553 1192 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLR 1266 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR 1266 (1428)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 369999999999999999999999999999999999999999999999999988763 5778
Q ss_pred cceEEEeCCc--ccc-CCcHHHhcCcC----CCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000553 1267 GRFAVVPQSP--FLF-EGSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1267 ~~i~~VpQdp--~lf-~gTIR~NLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LA 1338 (1428)
++++|+||+| .++ ..|+++|+... ....+++..+ .+ ..+.++.+|++ ........+||+|||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~---~~-~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARK---EA-VLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHH---HH-HHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 8999999999 344 46999998532 1111111111 10 12344555774 456777789999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
|||+.+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999988753 7899999999999985 8999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=363.73 Aligned_cols=226 Identities=24% Similarity=0.383 Sum_probs=188.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCC--ChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1263 (1428)
.|+++|++++|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999963 4699999999999999999999999999999999999763 489999999999876 456
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCCCC----C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMN----D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~----~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
..|++++|+||+|.+|++|+++|+.+.... . ++.+.++++.+++.+ ++.+..+..+.+||+|||||+
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-----EVKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-----hhHHHhhcChhhCCHHHHHHH
Confidence 778899999999999999999999753211 1 112333444433322 123345667778999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||||++.+|+++||||||++||.++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhC
Confidence 9999999999999999999999999999999999987777999999999999975 899999999999999999999876
Q ss_pred CCcHHHHHH
Q 000553 1415 ECSVFSSFV 1423 (1428)
Q Consensus 1415 ~~s~f~~l~ 1423 (1428)
+...+.+.+
T Consensus 239 ~~~~~~~~~ 247 (253)
T PRK14261 239 PHEELTENY 247 (253)
T ss_pred CCcHHHHHH
Confidence 544444443
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=354.47 Aligned_cols=198 Identities=27% Similarity=0.414 Sum_probs=168.8
Q ss_pred EEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEE
Q 000553 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1272 (1428)
Q Consensus 1193 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1272 (1428)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 469999999999999999999999999999999999999999999999999864 4567889999
Q ss_pred eCCc--cccCCcHHHhcCcCCC-C--ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1273 PQSP--FLFEGSLRDNLDPFHM-N--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1273 pQdp--~lf~gTIR~NLdp~~~-~--~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
||+| .+|+.|++||+..+.. . .++++.++++.+ |++.........||||||||++|||||+++|++
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL---------DLYALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc---------CCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 9998 4678899999975422 1 122344444444 454444555568999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhhhh-cCEEEEEeCCeEE
Q 000553 1348 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLV 1403 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~-~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv 1403 (1428)
|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999876 357899999999999976 8999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=367.69 Aligned_cols=219 Identities=26% Similarity=0.439 Sum_probs=185.1
Q ss_pred cEEEEEEEEEECCC----CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC-hHhH
Q 000553 1191 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDL 1265 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~----~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~-~~~l 1265 (1428)
.++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999743 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcceEEEeCCcc--ccCCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1266 RGRFAVVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1266 R~~i~~VpQdp~--lf~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
|++++++||+|. +|..|+.+|+.+... .+..+..+ .+.+.++.+||+.........||+|||||++||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE-----RVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHH-----HHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 899999999984 676789999965321 12222111 12233344466555566667899999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHhcc
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|+++|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+..||||++|++|++++.|+++++..+
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999998764 38999999999999988999999999999999999999864
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=366.93 Aligned_cols=221 Identities=26% Similarity=0.420 Sum_probs=185.0
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCCC--C
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1261 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~i--~ 1261 (1428)
+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 37 ~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 346999999999964 469999999999999999999999999999999999997 6899999999998653 4
Q ss_pred hHhHhcceEEEeCCccccCCcHHHhcCcCC---CCC---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1262 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1262 ~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~---~~~---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
...+|++++|+||++.+|++|+++|+.... ... ++++.++++..++.+.+ ....+....+||||||||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-----KDQLDSSGLDLSGGQQQRL 189 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-----HHHHhCCcccCCHHHHHHH
Confidence 567788999999999999999999996421 111 22344444444332111 1234566778999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEE-EEeCCeEEEecChhHHhc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEIL-ILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~-Vl~~G~ive~g~p~eLl~ 1413 (1428)
+|||||+++|+||||||||++||.++.+.+.+.|++..+++|||+|+|+++.+.. |||++ +|++|+|++.|+++++.+
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~ 269 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999988777899999999999886 89975 579999999999999987
Q ss_pred cCC
Q 000553 1414 DEC 1416 (1428)
Q Consensus 1414 ~~~ 1416 (1428)
++.
T Consensus 270 ~~~ 272 (285)
T PRK14254 270 NPE 272 (285)
T ss_pred CcC
Confidence 543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=358.60 Aligned_cols=207 Identities=30% Similarity=0.374 Sum_probs=173.5
Q ss_pred EEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1192 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
|+++|++++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996421 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEeCCccccC-CcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1270 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1270 ~~VpQdp~lf~-gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
+++||+|.+|+ .|+++|+..... .+..+.. ....+.++.+|++........+||||||||++|||||+++|
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 150 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP 150 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999987 699999864211 1111111 11233444456665566666789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEe--CCeEEEecCh
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILD--HGHLVEQGNP 1408 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~--~G~ive~g~p 1408 (1428)
++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 151 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 151 DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999998763 37899999999998865 89999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=375.34 Aligned_cols=216 Identities=28% Similarity=0.425 Sum_probs=184.4
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|+. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999999997654 56789999
Q ss_pred EEeCCccccC-CcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1271 VVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~VpQdp~lf~-gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
|+||++.+|. .|+++|+..+.. .+..+..+. ..+.++.+||+........+||+|||||++|||||+.+|+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999875 599999975321 122222211 1233443466555555566899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||||++|++|++++.|+++++.++
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999998864 48999999999999976 899999999999999999999764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=363.83 Aligned_cols=219 Identities=24% Similarity=0.366 Sum_probs=186.4
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1263 (1428)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5999999999964 369999999999999999999999999999999999986 479999999999853 4556
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCCC---CC---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1337 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~~---~~---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1337 (1428)
.+|++++++||+|.+|+.|+++|+.+... .. ++++.++++.+++.+.+. ...+..+.+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-----DKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-----HHhcCCcccCCHHHHHHHHH
Confidence 77899999999999998999999975321 11 233444556555544332 23455667899999999999
Q ss_pred HHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEe---------CCeEEEecC
Q 000553 1338 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD---------HGHLVEQGN 1407 (1428)
Q Consensus 1338 ARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~---------~G~ive~g~ 1407 (1428)
||||+++|+||||||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||||++|+ +|++++.|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 99999999999999999999999999999999987777899999999999876 79999998 899999999
Q ss_pred hhHHhccCC
Q 000553 1408 PQTLLQDEC 1416 (1428)
Q Consensus 1408 p~eLl~~~~ 1416 (1428)
++++.+++.
T Consensus 243 ~~~~~~~~~ 251 (264)
T PRK14243 243 TEKIFNSPQ 251 (264)
T ss_pred HHHHHhCCC
Confidence 999987654
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=364.48 Aligned_cols=223 Identities=23% Similarity=0.343 Sum_probs=190.1
Q ss_pred CCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCC--
Q 000553 1186 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII-- 1258 (1428)
Q Consensus 1186 wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~-- 1258 (1428)
-|..+.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 11 ~~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred cCCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 356788999999999964 3699999999999999999999999999999999999975 7999999998874
Q ss_pred --CCChHhHhcceEEEeCCccccCCcHHHhcCcCCC---C-----ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCC
Q 000553 1259 --NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1328 (1428)
Q Consensus 1259 --~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~---~-----~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS 1328 (1428)
......+|++++|+||+|.+|++|+++|+..... . .++++.++++.+++.+ ++....+.....||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS 163 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-----EVKDRLGDLAFNLS 163 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-----hhhHHHhCCcccCC
Confidence 2344677899999999999999999999964311 1 1244555666555432 22344556677899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecC
Q 000553 1329 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1407 (1428)
Q Consensus 1329 gGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~ 1407 (1428)
+|||||++|||||+++|+++||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987667899999999999975 89999999999999999
Q ss_pred hhHHhccC
Q 000553 1408 PQTLLQDE 1415 (1428)
Q Consensus 1408 p~eLl~~~ 1415 (1428)
++++..++
T Consensus 244 ~~~~~~~~ 251 (265)
T PRK14252 244 TDTIFIKP 251 (265)
T ss_pred HHHHHhCC
Confidence 99997654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=371.48 Aligned_cols=215 Identities=27% Similarity=0.386 Sum_probs=187.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. +...+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 34578899999
Q ss_pred EeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||+|.+|++ |++||+..+.. ...++..+ ...+.++.+|++........+||+|||||++|||||+++|++
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999987 99999964321 12222111 123445555777777777789999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|+|||||++||+.+.+.+++.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999988778999999999999887 899999999999999999999764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=353.82 Aligned_cols=202 Identities=27% Similarity=0.407 Sum_probs=174.0
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+. .++|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++... ...|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999953 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||++.+|+ .|+++|+..+. ..+++++.++++..++ +.........||+|||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l---------~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL---------KDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCC---------HHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998875 69999996532 1234445555555544 4344445567999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998764 47999999999999976 8999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=355.66 Aligned_cols=206 Identities=27% Similarity=0.414 Sum_probs=174.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ++++++
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999999766543 568999
Q ss_pred EeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||++.+|+ .|+++|+.... ....++..+ .+.+.++.+|++.........||+|||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 59999996531 112222111 122334445666666667778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
+||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998764 37999999999999887 8999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=343.30 Aligned_cols=203 Identities=25% Similarity=0.371 Sum_probs=172.1
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
|+++|++..|.. ..+++|+||+|++||+++++|||||||||+|+.|.+.++|++|+|.++|
T Consensus 2 I~~~nvsk~y~~------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr 75 (309)
T COG1125 2 IEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75 (309)
T ss_pred ceeeeeehhcCC------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHH
Confidence 688999998863 3459999999999999999999999999999999999999999999987
Q ss_pred cEEEEcCCCCCCc-ccHHHHHhcCC---CCChH----HHHHHHHHhcchH-HHhcccCCCcccccCCCCccchHHHHHHH
Q 000553 673 SIAYVPQVPWILS-GTIRDNILFGK---NYDPQ----SYSETLKACTLDV-DISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1428)
Q Consensus 673 ~i~y~~Q~p~l~~-~ti~~nI~~g~---~~~~~----~~~~v~~~c~l~~-di~~l~~gd~t~ig~~g~~LSGGQkqRva 743 (1428)
+||||-|+.-||. .||.|||..-. .++++ +.++.++..+|+. +. .......|||||+|||.
T Consensus 76 ~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~----------~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEY----------ADRYPHELSGGQQQRVG 145 (309)
T ss_pred hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHH----------hhcCchhcCcchhhHHH
Confidence 5999999999885 59999998743 35554 4555666667764 22 23456699999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcch-hhcCCEEEEEeCCeEEEecChHHHHh
Q 000553 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 744 lARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
+||||..+|+|+|+||||+||||-+++.+-+....-...-++|+|+||||++. +.-||+|.+|++|+|++.++++++..
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999988776432223347899999999987 56699999999999999999999986
Q ss_pred cc
Q 000553 823 SL 824 (1428)
Q Consensus 823 ~~ 824 (1428)
+.
T Consensus 226 ~P 227 (309)
T COG1125 226 NP 227 (309)
T ss_pred Cc
Confidence 53
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=360.90 Aligned_cols=219 Identities=28% Similarity=0.419 Sum_probs=186.5
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCCC-hHh
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTP-VRD 1264 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~i~-~~~ 1264 (1428)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 6899999999964 4699999999999999999999999999999999999986 6999999999997653 456
Q ss_pred HhcceEEEeCCccccCCcHHHhcCcCC----CCChHHHHHHHHHccHHHHHHhCCCc----hhhhcCCCCCChhHHHHHH
Q 000553 1265 LRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQLIC 1336 (1428)
Q Consensus 1265 lR~~i~~VpQdp~lf~gTIR~NLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLd----t~v~e~G~~LSgGQrQrl~ 1336 (1428)
+|++++|+||+|.+|+.|+++|+.... ..+++++.+. ..+.++.+|++ +.+...+.+||+|||||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGV-----AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 788999999999999999999997431 1233333221 12233333443 3456677789999999999
Q ss_pred HHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1337 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1337 LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.+.+
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999999887667899999999999876 8999999999999999999998765
Q ss_pred C
Q 000553 1416 C 1416 (1428)
Q Consensus 1416 ~ 1416 (1428)
.
T Consensus 254 ~ 254 (276)
T PRK14271 254 K 254 (276)
T ss_pred C
Confidence 3
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=355.94 Aligned_cols=205 Identities=31% Similarity=0.391 Sum_probs=171.7
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh---HhHhcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1268 (1428)
++++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 469999999999999999999999999999999999999999999999999987654 357889
Q ss_pred eEEEeCCccccCC-cHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
++++||+|.+|++ |+++|+.... ..+.++..+ .+.+.++.+|++........+||+|||||++|||||+++
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS 154 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcC
Confidence 9999999999985 9999996431 112111111 122333444565555555668999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeE
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1402 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1402 (1428)
|+|+||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 155 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999998763 58999999999999986 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=363.22 Aligned_cols=216 Identities=25% Similarity=0.403 Sum_probs=184.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EeCCccccCC-cHHHhcCcCCC-----CC--hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFHM-----ND--DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~~-----~~--d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
+||++.++++ |+++|+++... .. +.+. .....+.++.+|++.........||||||||++||||+++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAED-----NARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHH-----HHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999998877 99999975311 00 0110 0112223333456555566677899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 999999999999999999999999998764 47999999999999876 899999999999999999998753
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=360.11 Aligned_cols=225 Identities=23% Similarity=0.386 Sum_probs=188.0
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCee-----CCCCChHh-
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN-----IINTPVRD- 1264 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~d-----i~~i~~~~- 1264 (1428)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5899999999964 469999999999999999999999999999999999999999999999999 87776554
Q ss_pred ---HhcceEEEeCCcc--ccC-CcHHHhcCc----CCCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000553 1265 ---LRGRFAVVPQSPF--LFE-GSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1333 (1428)
Q Consensus 1265 ---lR~~i~~VpQdp~--lf~-gTIR~NLdp----~~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQ 1333 (1428)
.|+.++|+||+|. ++. .|+++|+.. +......++.+ ...+.++.+|++ +..+..+.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCChhHHhCCCccCCHHHHH
Confidence 3567999999984 343 478888742 11111112211 234566666886 4677888899999999
Q ss_pred HHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhH
Q 000553 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1334 rl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~e 1410 (1428)
|++|||||+++|+||||||||++||+++.+.+.+.|++..+ +.|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999985 89999999999999999999
Q ss_pred HhccCCcHHHHH
Q 000553 1411 LLQDECSVFSSF 1422 (1428)
Q Consensus 1411 Ll~~~~s~f~~l 1422 (1428)
+..++...|.+.
T Consensus 239 ~~~~~~~~~~~~ 250 (258)
T PRK11701 239 VLDDPQHPYTQL 250 (258)
T ss_pred HhcCCCCHHHHH
Confidence 987665445543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=364.96 Aligned_cols=213 Identities=27% Similarity=0.402 Sum_probs=183.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 36999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeCCccccCC-cHHHhcCcCCC--------C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHM--------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~~--------~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1338 (1428)
++||++.++.+ |+++|+..... . .++++.++++.+ |++........+||||||||++||
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV---------GLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc---------CCHHHhcCCcccCCHHHHHHHHHH
Confidence 99999877665 99999964311 0 112334444444 454444555568999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|||+.+|+||||||||++||..+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcCH
Confidence 99999999999999999999999999999998764 37999999999999965 899999999999999999998753
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=357.65 Aligned_cols=215 Identities=28% Similarity=0.399 Sum_probs=182.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+. +++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 369999999999999999999999999999999999999999999999999986653 4788999
Q ss_pred EeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||+|.+|++ |+++|+..... .+..+.. ..+.+.++.+++.........+||+||+||++||||++++|++
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999986 99999964321 1111111 1223445555665445556678999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
+||||||++||.++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++++.+
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 999999999999999999999987643 7999999999999876 8999999999999999999998654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=378.46 Aligned_cols=208 Identities=27% Similarity=0.400 Sum_probs=176.6
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH----hcceEEEeCCccccCC-
Q 000553 1207 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG- 1281 (1428)
Q Consensus 1207 ~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~i~~VpQdp~lf~g- 1281 (1428)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++++|+||++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876554 4689999999999975
Q ss_pred cHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCC
Q 000553 1282 SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358 (1428)
Q Consensus 1282 TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD 1358 (1428)
|+++|+.+.. ..+.++..+ ...+.++.+||+........+||||||||++|||||+.+|+||||||||++||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD 196 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 9999997432 112222111 12334444567666666777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000553 1359 AQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1359 ~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f 1419 (1428)
+.+.+.+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|++++.++...|
T Consensus 197 ~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 197 PLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999998764 48999999999999875 89999999999999999999988664433
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=364.68 Aligned_cols=217 Identities=26% Similarity=0.433 Sum_probs=182.4
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC--CChHhHhcce
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRF 1269 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~--i~~~~lR~~i 1269 (1428)
|+++||+++|+. .+++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 789999999963 2469999999999999999999999999999999999999999999999999853 2345678999
Q ss_pred EEEeCCc--cccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1270 AVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1270 ~~VpQdp--~lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
+|+||+| .+|+.|+++|+.... ..+.++..+ ...+.++.+|++.........||+|||||++||||++++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998 478889999996321 122222211 122334444565545555678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
|++|||||||++||+.+...+.+.|++.. ++.|||+|+|+++.+.. ||||++|++|++++.|+++++++.
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998764 47999999999999885 899999999999999999999864
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=341.07 Aligned_cols=172 Identities=35% Similarity=0.591 Sum_probs=162.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+....++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000553 1272 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351 (1428)
Q Consensus 1272 VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLD 1351 (1428)
++|+|.+|++|+++|+ ||+|||||++||||++++|++||||
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~~lllD 121 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------LSGGQRQRLGLARALYGNPRILVLD 121 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999998 9999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhcCEEEEEeCCeE
Q 000553 1352 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHL 1402 (1428)
Q Consensus 1352 EaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1402 (1428)
|||++||+.+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 122 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999998764 48899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=365.09 Aligned_cols=217 Identities=24% Similarity=0.352 Sum_probs=181.3
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC--CCChHhHhcce
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--NTPVRDLRGRF 1269 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~--~i~~~~lR~~i 1269 (1428)
++++||+++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999964 46999999999999999999999999999999999999999999999999985 33456778899
Q ss_pred EEEeCCcc--ccCCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1270 AVVPQSPF--LFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1270 ~~VpQdp~--lf~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
+|+||+|. ++..|+.+|+.... ..++++..+ .+.+.++.+|++.........||||||||++|||||+.+
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 99999985 56779999986421 112222211 122233334554444555678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 155 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 99999999999999999999999998764 47899999999999966 8999999999999999999987643
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=332.40 Aligned_cols=453 Identities=20% Similarity=0.279 Sum_probs=324.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCChhhHHHHHhcChhhhhhhhhHHHHH
Q 000553 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNI 1019 (1428)
Q Consensus 940 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~ 1019 (1428)
.++.-|+++..+..+...+.......++.+.-.+++.++.++++.+|+.-+++...++++.++++|+..|.... ..+..
T Consensus 49 ~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~ 127 (546)
T COG4615 49 LVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPE 127 (546)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHH
Confidence 34444444444445555556667788899999999999999999999999999999999999999999998332 33444
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHH
Q 000553 1020 LLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDY 1099 (1428)
Q Consensus 1020 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~ 1099 (1428)
+.+.....+++.+.+++.+|.+..+.+..+++..+.+....+..-+--+...++...++.+++-.++|.+..+..+-..+
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 66667777788888888888776655554444333322211111111111223345688999999999999887765443
Q ss_pred HH--HHHHHHHHHH----HHHH--------------HHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHH
Q 000553 1100 FM--AKFKEHVVLY----QRTS--------------YSELTASLWLSLRLQ---VGLALSYAAP---IVSLLGNFLSSFT 1153 (1428)
Q Consensus 1100 ~~--~~~~~~~~~~----~~~~--------------~~~~~~~~wl~~~l~---~gl~l~~~~~---~~~~l~~~i~~~~ 1153 (1428)
.. +.+...-... .+.. +.......|+.+... ...+.++++. +-+.+.+++..++
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP 287 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILP 287 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 32 2221111111 1111 111122233333322 2233333332 3356777888888
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHH
Q 000553 1154 ETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS 1233 (1428)
Q Consensus 1154 ~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKS 1233 (1428)
.+-++.+|..||.++...|+.+.-....+.++| ..||++||.|+|.+.. --+..||++|+.||.|=|+|.||||||
T Consensus 288 ~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKS 363 (546)
T COG4615 288 TLLTAQVAFNKIAKLELAPYKADFPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKS 363 (546)
T ss_pred HHHHHHHHHHHHHHhhcCCccccCCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHH
Confidence 899999999999998764433221122233335 4699999999998653 457889999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHh
Q 000553 1234 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1313 (1428)
Q Consensus 1234 TL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~ 1313 (1428)
|++++|.|+|.|++|+|++||.+++.-++++.|+-++.|.-|-+||+.++ .|.+..+.+.+..-|++..+....+-
T Consensus 364 T~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~~ktsl 439 (546)
T COG4615 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELAHKTSL 439 (546)
T ss_pred HHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999998765 34444566777766766655443221
Q ss_pred CCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHh--cCCcEEEEeccChhhhhhc
Q 000553 1314 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE--CKGMTVITIAHRISTVLNM 1391 (1428)
Q Consensus 1314 lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~--~~~~TvI~IaHrl~ti~~~ 1391 (1428)
. |.... ...||-|||.|+++--|++-+.+|+++||=-+.-||.=.+...+.+-.. -.|+||+.|||+-.....+
T Consensus 440 ~--d~~fs--~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~A 515 (546)
T COG4615 440 N--DGRFS--NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHA 515 (546)
T ss_pred c--CCccc--ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhH
Confidence 1 11111 1259999999999999999999999999999999999998887766433 2599999999999999999
Q ss_pred CEEEEEeCCeEEEe
Q 000553 1392 DEILILDHGHLVEQ 1405 (1428)
Q Consensus 1392 DrI~Vl~~G~ive~ 1405 (1428)
||++.|++|+++|.
T Consensus 516 Drll~~~~G~~~e~ 529 (546)
T COG4615 516 DRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHhcCceeec
Confidence 99999999999986
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=319.99 Aligned_cols=211 Identities=26% Similarity=0.425 Sum_probs=181.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|.+++|.++|.. .+ =..+++|++||+|||+|+||||||||++++.|+..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999963 23 256899999999999999999999999999999999999999999999887764 467999
Q ss_pred EeCCccccCC-cHHHhcCcCC----CC---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFH----MN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~----~~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
+.||.-||.- ||++|+..+- +. ..+.+..++.++|+..+.+ .-+..||||||||++|||+|+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~---------RLP~~LSGGqRQRvALARclvR 146 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLK---------RLPGELSGGQRQRVALARCLVR 146 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhh---------hCccccCchHHHHHHHHHHHhc
Confidence 9999999986 9999987542 22 2345667777777665543 3355799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCc
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1417 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s 1417 (1428)
+.+||+||||.|+||+.-.+.+...+.+.+ ++.|+++|||.++.+.. +||++++++|||++.|+-+++++.++.
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCCh
Confidence 999999999999999999999998887765 58899999999999876 799999999999999999999987653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=363.83 Aligned_cols=217 Identities=22% Similarity=0.346 Sum_probs=185.9
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
-.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999974 4699999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEeCCccccC-CcHHHhcCcCCC-C-------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1270 AVVPQSPFLFE-GSLRDNLDPFHM-N-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1270 ~~VpQdp~lf~-gTIR~NLdp~~~-~-------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
+|+||++.+|. .|+++|+.+... . .+. ......+.++.+|++.........||+|||||++||||
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKE------DEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHH------HHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHH
Confidence 99999998875 599999975311 0 111 01112233344466555566677899999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
++++|++|||||||++||+++.+.+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++++.|+++++...
T Consensus 158 l~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234 (265)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhhH
Confidence 999999999999999999999999999998764 37899999999998876 899999999999999999998753
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=361.05 Aligned_cols=224 Identities=26% Similarity=0.405 Sum_probs=185.2
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCeeCCC--CChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIIN--TPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~-----~G~I~IDG~di~~--i~~~ 1263 (1428)
.++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4789999999963 46999999999999999999999999999999999999874 8999999999875 3455
Q ss_pred hHhcceEEEeCCccccCC-cHHHhcCcCC---CC-ChHHHHH----HHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---MN-DDLKIWS----VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~g-TIR~NLdp~~---~~-~d~ei~~----aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1334 (1428)
.+|++++|+||+|.+|++ |+++|+.... .. .+++..+ .++..++++. +.........+||||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-----VKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-----hhhhhcCCcccCCHHHHHH
Confidence 778899999999999885 9999996321 11 2222222 2223332221 2223344566899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
++|||||+++|+||||||||++||..+.+.+.+.|++..+++|+|++||+++.+.+ ||||++|++|++++.|++++++.
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987678999999999999986 89999999999999999999988
Q ss_pred cCCcHHHH
Q 000553 1414 DECSVFSS 1421 (1428)
Q Consensus 1414 ~~~s~f~~ 1421 (1428)
++...+.+
T Consensus 237 ~~~~~~~~ 244 (252)
T PRK14272 237 NPRDERTE 244 (252)
T ss_pred CcCcHHHH
Confidence 76544543
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=362.14 Aligned_cols=219 Identities=24% Similarity=0.417 Sum_probs=182.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--CChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~--i~~~ 1263 (1428)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 5899999999964 3699999999999999999999999999999999999974 69999999999853 4456
Q ss_pred hHhcceEEEeCCccccCC-cHHHhcCcCC----CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~g-TIR~NLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1334 (1428)
.+|+.++++||++.+|+. |+++|+.... ..+. +.+.++++.+++.+.+ +........+||||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-----KDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hhHhhCCcccCCHHHHHH
Confidence 788999999999999974 9999986321 1111 2233334444332111 234556667899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEe------CCeEEEecC
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD------HGHLVEQGN 1407 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~------~G~ive~g~ 1407 (1428)
++||||++++|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||||++|+ +|+|++.|+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCC
Confidence 99999999999999999999999999999999999887667999999999999875 89999996 899999999
Q ss_pred hhHHhccCC
Q 000553 1408 PQTLLQDEC 1416 (1428)
Q Consensus 1408 p~eLl~~~~ 1416 (1428)
+++++.++.
T Consensus 237 ~~~~~~~~~ 245 (258)
T PRK14241 237 TEKIFSNPT 245 (258)
T ss_pred HHHHHhCcC
Confidence 999987543
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=375.26 Aligned_cols=209 Identities=25% Similarity=0.378 Sum_probs=174.7
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCe----eCCCCChHhH---h-cceEEEeCCccc
Q 000553 1207 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL----NIINTPVRDL---R-GRFAVVPQSPFL 1278 (1428)
Q Consensus 1207 ~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~----di~~i~~~~l---R-~~i~~VpQdp~l 1278 (1428)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||. |+...+...+ | ++++||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5799999999999999999999999999999999999999999999996 6777665544 3 589999999999
Q ss_pred cC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccc
Q 000553 1279 FE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354 (1428)
Q Consensus 1279 f~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaT 1354 (1428)
|+ .|+++|+.+.. ..+.++.. ....+.++.+||+........+||||||||++|||||+++|+||||||||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 98 69999996432 11222111 11233444446665556666789999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000553 1355 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420 (1428)
Q Consensus 1355 S~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~ 1420 (1428)
|+||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|++++.++...|.
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999987653 7999999999999865 899999999999999999999977644333
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=366.29 Aligned_cols=225 Identities=24% Similarity=0.342 Sum_probs=186.0
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCCC--C
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1261 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~i--~ 1261 (1428)
+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346999999999964 359999999999999999999999999999999999865 4999999999998643 3
Q ss_pred hHhHhcceEEEeCCccccCCcHHHhcCcCC---CC-Ch----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000553 1262 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1333 (1428)
Q Consensus 1262 ~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~---~~-~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1333 (1428)
...+|++++|+||+|.+|++|+++|+.... .. +. +++.++++..++.+. +..........|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE-----VSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc-----hhhHhhCChhhCCHHHHH
Confidence 345788999999999999899999997431 11 11 123344444433211 122345566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1334 rl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
|++|||||+++|++|||||||++||.++.+.+.+.|++..+++|||+++|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887667899999999999876 8999999999999999999998
Q ss_pred ccCCcHHH
Q 000553 1413 QDECSVFS 1420 (1428)
Q Consensus 1413 ~~~~s~f~ 1420 (1428)
+++...+.
T Consensus 270 ~~~~~~~~ 277 (286)
T PRK14275 270 TNPKDRMT 277 (286)
T ss_pred hCCCcHHH
Confidence 76554343
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=359.76 Aligned_cols=219 Identities=25% Similarity=0.377 Sum_probs=185.3
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCC-CCChHh
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII-NTPVRD 1264 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~-~i~~~~ 1264 (1428)
.++++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999963 4699999999999999999999999999999999999986 5999999999985 456677
Q ss_pred HhcceEEEeCCccccCCcHHHhcCcCC---CCC-h----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000553 1265 LRGRFAVVPQSPFLFEGSLRDNLDPFH---MND-D----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1336 (1428)
Q Consensus 1265 lR~~i~~VpQdp~lf~gTIR~NLdp~~---~~~-d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1336 (1428)
+|+.++|+||+|.+|++|+++|+.... ... + +++.++++.+++.+. +..........||+|||||++
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE-----VKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh-----hhHHhhcCcccCCHHHHHHHH
Confidence 889999999999999999999997431 111 1 122333444433221 123445666789999999999
Q ss_pred HHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1337 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1337 LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++..++
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 235 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 999999999999999999999999999999999988677999999999999887 8999999999999999999997654
Q ss_pred C
Q 000553 1416 C 1416 (1428)
Q Consensus 1416 ~ 1416 (1428)
.
T Consensus 236 ~ 236 (249)
T PRK14253 236 K 236 (249)
T ss_pred C
Confidence 3
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=361.38 Aligned_cols=220 Identities=24% Similarity=0.376 Sum_probs=186.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH-hcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1269 (1428)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5999999999963 469999999999999999999999999999999999999999999999999988776554 4569
Q ss_pred EEEeCCccccCC-cHHHhcCcCCC-----------CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHM-----------ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1333 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~-----------~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1333 (1428)
+++||+|.+|++ |+++|+..... .. +.+..+.. ....+.++.+|++...+....+||+||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEAL--DRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHH--HHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 999999999986 99999975311 00 00000111 12334455568877777888899999999
Q ss_pred HHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhH
Q 000553 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1334 rl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~e 1410 (1428)
|++||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999976 89999999999999999999
Q ss_pred Hhcc
Q 000553 1411 LLQD 1414 (1428)
Q Consensus 1411 Ll~~ 1414 (1428)
+..+
T Consensus 241 ~~~~ 244 (255)
T PRK11300 241 IRNN 244 (255)
T ss_pred HhhC
Confidence 8764
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=360.11 Aligned_cols=466 Identities=20% Similarity=0.235 Sum_probs=321.0
Q ss_pred HHHHhhhhhhhhhhhcccCCCC---CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000553 912 QASRNGNDLWLSYWVDTTGSSQ---TKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 988 (1428)
Q Consensus 912 ~~~~~~~~~wl~~w~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ 988 (1428)
.+.....++|+..|.....+.- .......-+.+|.+++.+.......+.++......+.-..+-+.++++-+... .
T Consensus 56 ~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~ 134 (604)
T COG4178 56 ILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-R 134 (604)
T ss_pred HHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c
Confidence 3344455677777764321100 00111223567777777777777788888888888888888888888888777 4
Q ss_pred ccccCChh------hHHHHHhcChhhhhhhhhHHHHHHHHHHHHHHHHhhhHH--------------HHHH----HHHHH
Q 000553 989 FFDQTPGG------RILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLS--------------YVQV----FFLLL 1044 (1428)
Q Consensus 989 ff~~~~~G------~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~--------------~~~~----~~~~~ 1044 (1428)
||.....| ..=+|..+|+...-+..-.....++.++++++...+++. +..| |++++
T Consensus 135 ~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~ 214 (604)
T COG4178 135 YYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVII 214 (604)
T ss_pred hHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHH
Confidence 44332222 334688888877666544444555555554443333322 1111 11112
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 1045 LVPFW-FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL 1123 (1428)
Q Consensus 1045 ~~p~~-~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1123 (1428)
.+++. .+...+.+...+..-+..++|..-|.- ..-.-+....|-.|+-|+...++..+..+.-.+.+......+.
T Consensus 215 Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~----Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~ 290 (604)
T COG4178 215 YAISASLLTHLIGRPLIRLNFERQKLEADFRYS----LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQI 290 (604)
T ss_pred HHHHHHHHHHHHccccccccHHHHHHHHHHHHH----HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 222345555555555555555554432 3344566778888888887777666655555444444433333
Q ss_pred HH----------HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----
Q 000553 1124 WL----------SLRLQ-----------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV----- 1171 (1428)
Q Consensus 1124 wl----------~~~l~-----------------~gl~l~~~~~~~~~l~~~i~~~~~~e~~~~sveRi~~~~~~----- 1171 (1428)
++ +..+- +..+.....++...++|++..+.++..-...+.|+.++.+.
T Consensus 291 ~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~ 370 (604)
T COG4178 291 RLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQ 370 (604)
T ss_pred hhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 22211 22233445566778899999999999999999999998732
Q ss_pred -CccccccCCCCCCCCCC--CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCc
Q 000553 1172 -PQEELCGYQSLSPDWPF--QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248 (1428)
Q Consensus 1172 -~~e~~~~~~~~~~~wp~--~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G 1248 (1428)
+++...... ..-..-. +..|+|+|++..-+++. ..|++.||.|+|||.+-|.|+||||||||+++|.|+.+--+|
T Consensus 371 ~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G 448 (604)
T COG4178 371 MDTEKPARTG-RRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448 (604)
T ss_pred CcccccCccc-ccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCC
Confidence 222111100 0000001 57899999999987654 789999999999999999999999999999999999999999
Q ss_pred eEEECCeeCCCCChHhHhcceEEEeCCccccCCcHHHhcC-cCCC--CChHHHHHHHHHccHHHHHHhC-CCchhhhcCC
Q 000553 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHM--NDDLKIWSVLEKCHVKEEVEAV-GLETFVKESG 1324 (1428)
Q Consensus 1249 ~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~gTIR~NLd-p~~~--~~d~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G 1324 (1428)
+|..-. -+++-++||.|.+-.||+||-|. |... ++|+|+.++|.+|||.+.++++ +.+. -+
T Consensus 449 ~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-W~--- 513 (604)
T COG4178 449 RISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-WD--- 513 (604)
T ss_pred ceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-Hh---
Confidence 987641 23589999999999999999984 4433 7899999999999999999987 3333 22
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeC
Q 000553 1325 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH 1399 (1428)
Q Consensus 1325 ~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~ 1399 (1428)
.-||+|||||+++||.+|++|++++||||||+||.+++..+.+.++++..++|||.|+||.....-.++.+-+++
T Consensus 514 ~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred hhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 359999999999999999999999999999999999999999999999999999999999887777777666543
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=360.23 Aligned_cols=217 Identities=26% Similarity=0.373 Sum_probs=183.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999964 46999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeCCccc-cCCcHHHhcCcCCC-C--ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc----
Q 000553 1271 VVPQSPFL-FEGSLRDNLDPFHM-N--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL---- 1342 (1428)
Q Consensus 1271 ~VpQdp~l-f~gTIR~NLdp~~~-~--~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL---- 1342 (1428)
++||++.+ +..|+++|+..... . ..++.. ....+.++.+|++.........||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~ 154 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDD-----ALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWE 154 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHH-----HHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 99999987 56799999865321 1 111100 01223333345655555666789999999999999999
Q ss_pred --cCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1343 --KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1343 --~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
++|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (258)
T PRK13548 155 PDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTP 231 (258)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhCh
Confidence 5999999999999999999999999998764 47899999999999875 899999999999999999998763
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=360.54 Aligned_cols=223 Identities=24% Similarity=0.342 Sum_probs=188.4
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCC--ChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1263 (1428)
.+.+++.+++|+. .++|+|+||+|+|||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 4699999999999999999999999999999999999986 799999999998643 445
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCCCC------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMN------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1337 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1337 (1428)
.+|++++++||+|.+|..|+++|+.+.... .++++.++++.+++.+.+ +...++...+||+|||||++|
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV-----KDKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh-----hhhhhCCcccCCHHHHHHHHH
Confidence 678899999999999999999999754211 123455556655543322 123445667899999999999
Q ss_pred HHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEe--------CCeEEEecCh
Q 000553 1338 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD--------HGHLVEQGNP 1408 (1428)
Q Consensus 1338 ARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~--------~G~ive~g~p 1408 (1428)
||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||||++|+ +|++++.|++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 99999999999999999999999999999999988778899999999999876 89999996 8999999999
Q ss_pred hHHhccCCcHHH
Q 000553 1409 QTLLQDECSVFS 1420 (1428)
Q Consensus 1409 ~eLl~~~~s~f~ 1420 (1428)
+++++++...+.
T Consensus 241 ~~~~~~~~~~~~ 252 (261)
T PRK14263 241 AQIFQNPREQLT 252 (261)
T ss_pred HHHHhCCCcHHH
Confidence 999876543343
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=363.01 Aligned_cols=221 Identities=25% Similarity=0.364 Sum_probs=186.6
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--CC
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TP 1261 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~--i~ 1261 (1428)
.-.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 347999999999964 3699999999999999999999999999999999999863 59999999999864 34
Q ss_pred hHhHhcceEEEeCCccccCCcHHHhcCcCCC---C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1262 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1262 ~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~---~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
...+|++++|+||++.+|++|+++|+..... . .++++.++++.+++.+.+ .......+..||||||||+
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-----KDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-----HHHhcCCcccCCHHHHHHH
Confidence 4567899999999999998999999965321 1 123344455555543322 2234456678999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEe---------CCeEEEe
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD---------HGHLVEQ 1405 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~---------~G~ive~ 1405 (1428)
+|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.. ||||++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999988778999999999999976 79999997 8999999
Q ss_pred cChhHHhccCC
Q 000553 1406 GNPQTLLQDEC 1416 (1428)
Q Consensus 1406 g~p~eLl~~~~ 1416 (1428)
|+++++..++.
T Consensus 251 g~~~~~~~~~~ 261 (274)
T PRK14265 251 SPTEQMFGSPQ 261 (274)
T ss_pred CCHHHHHhCCC
Confidence 99999987654
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=368.12 Aligned_cols=220 Identities=24% Similarity=0.418 Sum_probs=185.7
Q ss_pred CccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCCC--C
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1261 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-----~~~G~I~IDG~di~~i--~ 1261 (1428)
+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 447999999999964 469999999999999999999999999999999999986 6899999999998753 4
Q ss_pred hHhHhcceEEEeCCccccCCcHHHhcCcCCC---------------C-----ChHHHHHHHHHccHHHHHHhCCCchhhh
Q 000553 1262 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---------------N-----DDLKIWSVLEKCHVKEEVEAVGLETFVK 1321 (1428)
Q Consensus 1262 ~~~lR~~i~~VpQdp~lf~gTIR~NLdp~~~---------------~-----~d~ei~~aL~~~~l~~~i~~lgLdt~v~ 1321 (1428)
...+|++++|+||++.+|++|+++|+..... . .++++.++++.+++.+ +++..++
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~ 195 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-----EVNDRLD 195 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-----hhhHHhc
Confidence 5678899999999999999999999974210 0 0122334444443322 1234556
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEE-EEEeC
Q 000553 1322 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEI-LILDH 1399 (1428)
Q Consensus 1322 e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI-~Vl~~ 1399 (1428)
..+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++..++.|+|+|+|+++.+.. |||| ++|++
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 677899999999999999999999999999999999999999999999988777899999999999876 8997 56899
Q ss_pred CeEEEecChhHHhccC
Q 000553 1400 GHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1400 G~ive~g~p~eLl~~~ 1415 (1428)
|++++.|+++++.+++
T Consensus 276 G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 276 GELVEYDDTDKIFENP 291 (305)
T ss_pred CEEEEeCCHHHHHhCc
Confidence 9999999999998654
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=354.85 Aligned_cols=211 Identities=24% Similarity=0.320 Sum_probs=176.0
Q ss_pred ccEEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh---
Q 000553 1190 GLIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD--- 1264 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~--- 1264 (1428)
..|+++|++++|+++. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 3699999999997532 35999999999999999999999999999999999999999999999999998877643
Q ss_pred H-hcceEEEeCCccccCC-cHHHhcCcC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000553 1265 L-RGRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1339 (1428)
Q Consensus 1265 l-R~~i~~VpQdp~lf~g-TIR~NLdp~---~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1339 (1428)
. +++++++||+|.+|++ |+++|+... ...+..+. ...+.+.++.+|++.........||+|||||++|||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 2 3679999999999885 999998642 11111111 111233444445655555566689999999999999
Q ss_pred HHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeCCeEEEe
Q 000553 1340 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1405 (1428)
Q Consensus 1340 ALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~ 1405 (1428)
||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999998764 27899999999999988999999999999874
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=357.84 Aligned_cols=204 Identities=28% Similarity=0.375 Sum_probs=175.7
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 45999999999964 46999999999999999999999999999999999999999999999998763 467899
Q ss_pred EEEeCCccccC-CcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1270 AVVPQSPFLFE-GSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1270 ~~VpQdp~lf~-gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+|+||+|.+|+ .|+++|+.+... ..++++.+++ +.+|++........+||||||||++|||||+++|++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l---------~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL---------AAVGLADRANEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH---------HHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999987 599999975321 1123333333 344565556666778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChh
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1409 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~ 1409 (1428)
|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999998763 37999999999999865 8999999999999988754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=353.40 Aligned_cols=204 Identities=26% Similarity=0.430 Sum_probs=174.1
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+. +++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999963 469999999999999999999999999999999999999999999999998753 46789999
Q ss_pred EeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||++.+|++ |+++|+..... .+..+. ...+.+.++.+|++........+||+|||||++||||++++|++
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999886 99999864321 111111 11234455556777666777778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
+||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999998764 47899999999999876 8999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=355.26 Aligned_cols=216 Identities=27% Similarity=0.406 Sum_probs=183.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+. +++++|+||+|+|||++||+|+||||||||+++|.|+++|.+|+|.+||.++...+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 478999999974 369999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||+|.+|.+ |+++|+.+... .+..+.. ....+.++.+|++........+||+|||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-----ERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999976 99999864211 1111110 1123344445676666666778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
+||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.. ||||++|++|++++.|+++++.+.+.
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~~ 223 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCCc
Confidence 999999999999999999999987643 8999999999999876 79999999999999999999987553
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=359.36 Aligned_cols=225 Identities=24% Similarity=0.362 Sum_probs=185.1
Q ss_pred cEEEEEEEEEECCC-------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH
Q 000553 1191 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~ 1263 (1428)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 24699999999999999999999999999999999999999999999999999765666
Q ss_pred hHhcceEEEeCCcc--ccCC-cHHHhcCcC---C-CCCh----HHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhH
Q 000553 1264 DLRGRFAVVPQSPF--LFEG-SLRDNLDPF---H-MNDD----LKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQ 1331 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~--lf~g-TIR~NLdp~---~-~~~d----~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQ 1331 (1428)
..|++++|+||+|. +++. |+.+|+... + .... +++.++++ .+|++ ........+||+||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~---------~~~l~~~~~~~~~~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLR---------QVGLLPDHASYYPHMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHH---------HcCCChHHHhcCchhcCHHH
Confidence 66778999999985 4544 888887531 1 1111 22333344 34553 22334456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecCh
Q 000553 1332 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1332 rQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p 1408 (1428)
|||++|||||+++|+||||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 234 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999999998864 37899999999999987 899999999999999999
Q ss_pred hHHhccCC-cHHHHHHH
Q 000553 1409 QTLLQDEC-SVFSSFVR 1424 (1428)
Q Consensus 1409 ~eLl~~~~-s~f~~l~~ 1424 (1428)
+++.+++. ..+++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 235 ADVLASPLHELTKRLIA 251 (267)
T ss_pred HHHhcCCCCHHHHHHHH
Confidence 99987653 34556665
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=353.41 Aligned_cols=200 Identities=31% Similarity=0.421 Sum_probs=170.1
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH---hHhcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1268 (1428)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 4699999999999999999999999999999999999999999999999999877643 46789
Q ss_pred eEEEeCCccccC-CcHHHhcCcCC---CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1269 FAVVPQSPFLFE-GSLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1269 i~~VpQdp~lf~-gTIR~NLdp~~---~~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
++|+||+|.+|+ .|+++|+.... ... +++++++++. +|++........+||||||||++||||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQ---------VGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------cCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999999986 59999986431 111 1233344444 355444444556899999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCe
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGH 1401 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1401 (1428)
|+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999998864 48999999999999987 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=360.05 Aligned_cols=221 Identities=25% Similarity=0.369 Sum_probs=186.1
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCeeCCC--CCh
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIIN--TPV 1262 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~-----~G~I~IDG~di~~--i~~ 1262 (1428)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 47999999999964 36999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HhHhcceEEEeCCccccCCcHHHhcCcCC----CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000553 1263 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~gTIR~NLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1334 (1428)
..+|+.++++||++.+|+.|++||+.... ..++ +++.++++.+++.+.+ +...+..+..||+|||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-----KHKIHKSALDLSGGQQQR 158 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-----hhHhcCCcccCCHHHHHH
Confidence 67789999999999999999999996421 1122 2234445554443222 223456667899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeC-----CeEEEec
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDH-----GHLVEQG 1406 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~-----G~ive~g 1406 (1428)
++|||||+++|+||||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++.|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 999999999999999999999999999999999998743 48999999999999876 799999999 9999999
Q ss_pred ChhHHhccCCc
Q 000553 1407 NPQTLLQDECS 1417 (1428)
Q Consensus 1407 ~p~eLl~~~~s 1417 (1428)
+|+++..++..
T Consensus 239 ~~~~~~~~~~~ 249 (261)
T PRK14258 239 LTKKIFNSPHD 249 (261)
T ss_pred CHHHHHhCCCC
Confidence 99999876554
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=350.95 Aligned_cols=207 Identities=27% Similarity=0.377 Sum_probs=173.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh---Hhcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LRGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR~~ 1268 (1428)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++... +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999532 46999999999999999999999999999999999999999999999999998776543 6889
Q ss_pred eEEEeCCcccc-CCcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1269 FAVVPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1269 i~~VpQdp~lf-~gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
++|+||+|.+| ..|+++|+.... ..++++..+. ..+.++.+|++.........||+|||||++||||++++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 99999999875 569999997531 1222222211 12233444665555666678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEE
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVE 1404 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1404 (1428)
|++|||||||++||+++.+.+.+.|++.. ++.|+|+|||+++.+.. ||||++|++|+++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999998763 47899999999999987 79999999999863
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=371.55 Aligned_cols=226 Identities=21% Similarity=0.325 Sum_probs=183.8
Q ss_pred cEEEEEEEEEECC--CCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC----CCCceEEECCeeCCCCChHh
Q 000553 1191 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVRD 1264 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~----~~~G~I~IDG~di~~i~~~~ 1264 (1428)
.++++|++++|+. +...+|+||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22469999999999999999999999999999999999986 58999999999999888765
Q ss_pred Hh----cceEEEeCCcc--ccC-CcHHHhcCcC-------CC-CCh-HHHHHHHHHccHHHHHHhCCCch---hhhcCCC
Q 000553 1265 LR----GRFAVVPQSPF--LFE-GSLRDNLDPF-------HM-NDD-LKIWSVLEKCHVKEEVEAVGLET---FVKESGI 1325 (1428)
Q Consensus 1265 lR----~~i~~VpQdp~--lf~-gTIR~NLdp~-------~~-~~d-~ei~~aL~~~~l~~~i~~lgLdt---~v~e~G~ 1325 (1428)
++ ++|++|||+|. +++ .||.+|+... +. ..+ .+. +....+.++.+||+. .......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~gL~~~~~~~~~~p~ 157 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRVGIKDHKDAMRSFPY 157 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHCCCCChHHHHhCCch
Confidence 53 47999999996 333 4888887420 00 011 011 011233444445542 3456667
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeE
Q 000553 1326 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHL 1402 (1428)
Q Consensus 1326 ~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1402 (1428)
.||||||||++|||||+.+|+|||+||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT 237 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988653 7999999999999976 899999999999
Q ss_pred EEecChhHHhccCCcHHHH
Q 000553 1403 VEQGNPQTLLQDECSVFSS 1421 (1428)
Q Consensus 1403 ve~g~p~eLl~~~~s~f~~ 1421 (1428)
+|.|+++++.+++...|.+
T Consensus 238 ve~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 238 VETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEECCHHHHHhCCCCHHHH
Confidence 9999999999876555654
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=349.57 Aligned_cols=200 Identities=25% Similarity=0.400 Sum_probs=170.1
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EeCCccccCC-cHHHhcCcCCCC-------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
+||+|.+|++ |+++|+.+.... .++++.++++.+ |++.........||+|||||++||||+++
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARV---------GLAGLEKRLPGELSGGERQRVALARVLVR 145 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHc---------CCHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999986 999999753211 122334444444 55544555566899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
+|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999998764 37899999999999976 8999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=350.73 Aligned_cols=201 Identities=25% Similarity=0.378 Sum_probs=171.7
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|.+|+|+. +++|+|+||++++|++++|+||||||||||||+|+|.++|.+|+|.++|
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 3678999999973 2359999999999999999999999999999999999999999999998
Q ss_pred -cEEEEcCCCCCCc-ccHHHHHhcCCC--------C---ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHH
Q 000553 673 -SIAYVPQVPWILS-GTIRDNILFGKN--------Y---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~-~ti~~nI~~g~~--------~---~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQk 739 (1428)
.+||+||.+.... -||+|-+.+|+. . |.+...++++.+++++-. ...-.+||||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGer 144 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGER 144 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHH
Confidence 5999999986654 499999999852 1 334456668888776432 233458999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcch-hhcCCEEEEEeCCeEEEecChH
Q 000553 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 740 qRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~ 818 (1428)
|||.|||||+++|+|++||||||+||....-.+++.+..-...+|+|+|+|+||++. +.+||++++|++|++..+|+++
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ 224 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPE 224 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcc
Confidence 999999999999999999999999999999999987433223557899999999987 5679999999999999999998
Q ss_pred HHHh
Q 000553 819 DLAV 822 (1428)
Q Consensus 819 el~~ 822 (1428)
|.+.
T Consensus 225 evlT 228 (258)
T COG1120 225 EVLT 228 (258)
T ss_pred hhcC
Confidence 8764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=358.79 Aligned_cols=222 Identities=25% Similarity=0.355 Sum_probs=185.3
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCeeCCC--CChH
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIIN--TPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~--~---~~G~I~IDG~di~~--i~~~ 1263 (1428)
.|+++||+++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 5899999999974 469999999999999999999999999999999999975 4 58999999999864 3445
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCC---C-CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~---~-~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1335 (1428)
.+|++++|+||+|.+|+.|+++|+.... . .. ++++.++++.+++.+ ++..........||+|||||+
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-----EVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-----chhhHHhcCcccCCHHHHHHH
Confidence 6788999999999999999999986421 1 11 122333444443321 123345566678999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||||++++|++|||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|++.+...+
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999887667899999999999976 899999999999999999999876
Q ss_pred CCcHH
Q 000553 1415 ECSVF 1419 (1428)
Q Consensus 1415 ~~s~f 1419 (1428)
+...+
T Consensus 238 ~~~~~ 242 (252)
T PRK14255 238 PKEKE 242 (252)
T ss_pred CCChH
Confidence 65433
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=350.47 Aligned_cols=208 Identities=25% Similarity=0.380 Sum_probs=182.1
Q ss_pred EEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh----HhHhcc
Q 000553 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV----RDLRGR 1268 (1428)
Q Consensus 1193 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~----~~lR~~ 1268 (1428)
.+.|+.++|+++ .++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999755 569999999999999999999999999999999999999999999999998876542 345678
Q ss_pred eEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1269 i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
++|+||+|.+|+.|+++|+......++++..++++.+++.+.++.+ |+++.++....+||+|||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999875545566677888888888777665 78888888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHH--HHHHhc-CCcEEEEeccChhhhhhcCEEEEEeCCe
Q 000553 1347 VLCLDECTANVDAQTASILQN--AISSEC-KGMTVITIAHRISTVLNMDEILILDHGH 1401 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~--~i~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1401 (1428)
||||||||++||..+.+.+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999887776 444432 3689999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=365.52 Aligned_cols=213 Identities=30% Similarity=0.504 Sum_probs=184.9
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++|++.+|+. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999973 24699999999999999999999999999999999999999999999999998665 678899999
Q ss_pred EEeCCccccCC-cHHHhcCcCCCC-------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
|+||+|.+++. |++|||+++... .++.+.+.++..+ |+..-......||+|||||+.||+||+
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~---------L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFG---------LEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcC---------CchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 99999998876 999999865321 1234555555554 443223334579999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhcC-C-cEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSECK-G-MTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~-~-~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||||++|++|+++..|+++++...
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999998865 4 799999999999998 999999999999999999998654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=358.83 Aligned_cols=214 Identities=23% Similarity=0.339 Sum_probs=182.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999964 469999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EeCCcc-ccCCcHHHhcCcCCC--------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1272 VPQSPF-LFEGSLRDNLDPFHM--------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1272 VpQdp~-lf~gTIR~NLdp~~~--------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
+||+|. .+..|+++|+..+.. ..+++ ...+.+.++.+|++.........||+|||||++||||++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHD------AAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHH------HHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 999995 456799999965321 00110 011233344445554455566789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
.+|+++||||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999998764 37899999999999965 89999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=349.43 Aligned_cols=204 Identities=26% Similarity=0.416 Sum_probs=173.7
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC--CChHhHhcce
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRF 1269 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~--i~~~~lR~~i 1269 (1428)
++++||+++|+. .++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 469999999999999999999999999999999999999999999999999853 4556778999
Q ss_pred EEEeCCccccC-CcHHHhcCcCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1270 AVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1270 ~~VpQdp~lf~-gTIR~NLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
+|+||+|.+|+ .|+++|+.... ..+.++..+ ...+.++.+|++........+||+|||||++||||++++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 99999999887 59999996532 122222111 123445555777666777778999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeE
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1402 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1402 (1428)
|++|||||||++||+++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999998764 47899999999999976 899999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=355.05 Aligned_cols=227 Identities=27% Similarity=0.390 Sum_probs=188.2
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC------eeCCCCChH
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG------LNIINTPVR 1263 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG------~di~~i~~~ 1263 (1428)
..++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 46999999999964 4699999999999999999999999999999999999999997666655 677777777
Q ss_pred hHhcceEEEeCCccccCC-cHHHhcCcCC----CCChHHHHHHHHHccHHHHHHhCCCc----hhhhcCCCCCChhHHHH
Q 000553 1264 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQL 1334 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~g-TIR~NLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLd----t~v~e~G~~LSgGQrQr 1334 (1428)
.+|++++|+||+|.+|++ |+++|+.... ...++++++. +.+.++.+|++ ...+..+..||+|||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI-----VEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 889999999999999986 9999997431 1122233221 22233333553 23455667899999999
Q ss_pred HHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1335 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1335 l~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
++||||++++|+++||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999887778999999999999965 89999999999999999999988
Q ss_pred cCCcHHHHHH
Q 000553 1414 DECSVFSSFV 1423 (1428)
Q Consensus 1414 ~~~s~f~~l~ 1423 (1428)
++.-.+.+.+
T Consensus 242 ~~~~~~~~~~ 251 (257)
T PRK14246 242 SPKNELTEKY 251 (257)
T ss_pred CCCcHHHHHH
Confidence 7654455443
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=352.36 Aligned_cols=211 Identities=25% Similarity=0.347 Sum_probs=180.7
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|+. .++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCccccCCcHHHhcCcCCCC--ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1271 VVPQSPFLFEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1271 ~VpQdp~lf~gTIR~NLdp~~~~--~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
++||+|.+|+.|+++|+...... .+.+ ...+.+.++.+|++ +.......+||+|||||++|||||+++|++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPD------PAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV 158 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChH------HHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999642110 1100 01123444555774 456677789999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEe-CCeEEEecChh
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILD-HGHLVEQGNPQ 1409 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~-~G~ive~g~p~ 1409 (1428)
+||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999998864 3789999999999998899999995 66667778874
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=350.72 Aligned_cols=214 Identities=27% Similarity=0.444 Sum_probs=180.7
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+. .+|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 478999999963 38999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||++.+|+ .|+++|+.... ..+..+..+ .+.+.++.+|+...+.....+||+|||||++||||++++|++
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER-----KVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999886 69999996321 111111111 122333444555555666678999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
++|||||++||..+.+.+.+.+++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999988643 8999999999999886 8999999999999999999998764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=351.64 Aligned_cols=201 Identities=33% Similarity=0.457 Sum_probs=166.2
Q ss_pred EEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEE
Q 000553 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1272 (1428)
Q Consensus 1193 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1272 (1428)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999964 46999999999999999999999999999999999999999999999998874 468899999
Q ss_pred eCCccc---cCCcHHHhcCcCCCC-------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1273 PQSPFL---FEGSLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1273 pQdp~l---f~gTIR~NLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
||+|.+ |+.|+++|+...... ..++. .....+.++.+|++........+||||||||++|||||+
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD-----KAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 999976 568999998643211 11111 011233344445555455566789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999998764 67899999999999976 7999999986 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=346.57 Aligned_cols=204 Identities=52% Similarity=0.902 Sum_probs=182.1
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcCcEEEEcCCCCCCc
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~~i~y~~Q~p~l~~ 685 (1428)
++++|+++.|..... +...+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~-~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQ-ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCc-cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhcc
Confidence 368899999964210 0023699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCccccc
Q 000553 686 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765 (1428)
Q Consensus 686 ~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD 765 (1428)
.|++||+.++..+++++..++.+.+++...+..+|.|.+|..++++.+||||||||++||||++.+|+++||||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999987777777888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCe
Q 000553 766 AQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1428)
Q Consensus 766 ~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 810 (1428)
++..+.+++.++......++|+|++||+.+.+..||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999898887644322234689999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=346.02 Aligned_cols=220 Identities=30% Similarity=0.424 Sum_probs=184.5
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCe---eCCCCChHhHhc
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL---NIINTPVRDLRG 1267 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~---di~~i~~~~lR~ 1267 (1428)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.++++.+ .+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hc
Confidence 3778899888864 36899999999999999999999999999999999999999999999999 77774433 46
Q ss_pred ceEEEeCCccccC-CcHHHhcCcCCCC-----ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1268 RFAVVPQSPFLFE-GSLRDNLDPFHMN-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1268 ~i~~VpQdp~lf~-gTIR~NLdp~~~~-----~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
+||+|.||..||+ .||++||.++-+. ++.++. ....+.++-..|+-.-...+..||||||||+||||||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r-----~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR-----ARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHH-----HHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHh
Confidence 7999999999987 4999999876422 222221 1222222222444444556778999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcH
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSV 1418 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~ 1418 (1428)
...|++|+||||.++||.+-.+.+++-+++.. -++|+++|||+.+.+.. ||||+||++|+|...|+|+|....+++.
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 99999999999999999999999999988764 38999999999998876 8999999999999999999999988876
Q ss_pred H
Q 000553 1419 F 1419 (1428)
Q Consensus 1419 f 1419 (1428)
|
T Consensus 233 f 233 (345)
T COG1118 233 F 233 (345)
T ss_pred c
Confidence 6
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=350.30 Aligned_cols=209 Identities=24% Similarity=0.409 Sum_probs=178.3
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++||+++|+.. ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999632 249999999999999999999999999999999999999999999999876654 3578999
Q ss_pred EeCCccccCC-cHHHhcCcCC-CC---C---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFH-MN---D---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~-~~---~---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
+||+|.+|++ |+++|+.... .. . ++++.++++. +|++..+......||+|||||++||||+++
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~G~~qrv~laral~~ 146 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQ---------MGIEDLLARLPGQLSGGQRQRVALARCLVR 146 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHH---------cCcHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999986 9999997421 11 1 1223334444 455555555566899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccC
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
+|+++||||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 9999999999999999999999999987643 7899999999999876 7999999999999999999998754
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=331.70 Aligned_cols=220 Identities=27% Similarity=0.427 Sum_probs=187.7
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh-Hhcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1269 (1428)
.++++|++..|.. -.+|+||||++++||.++++||||+|||||+++|+|+.++.+|+|.++|.||...+.+. .|..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 4789999999976 36999999999999999999999999999999999999999999999999999998765 47789
Q ss_pred EEEeCCccccCC-cHHHhcCcCCCC-ChHHHHHHHHHccHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~~-~d~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
++|||...+|+. ||.|||..+... .+++-++. .+.+..+-+ -|....+..+.+|||||+|.++|||||+.+||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999976 999999754321 11111110 022222222 56666677788999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
+|+|||||.+|-|.--+.|.++|++..+ +-||+.|-++.....+ +||.+||++|+|+..|+++||.++++
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999988764 5699999999998876 79999999999999999999998764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=367.45 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=175.1
Q ss_pred EECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCcccc
Q 000553 1200 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1279 (1428)
Q Consensus 1200 ~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf 1279 (1428)
+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 5643 469999999999999999999999999999999999999999999999999976 3456788999999999999
Q ss_pred CC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecccc
Q 000553 1280 EG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355 (1428)
Q Consensus 1280 ~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS 1355 (1428)
++ |+++|+.+... .+..+..+ ...+.++.+|++........+||||||||++|||||+++|++|||||||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEE-----RAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 86 99999975321 11111111 12334444566555556667899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1356 NVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1356 ~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||||++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998864 47999999999999976 899999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=358.50 Aligned_cols=220 Identities=24% Similarity=0.308 Sum_probs=184.8
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC--------CceEEECCeeCCCCChH
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC--------GGQILVDGLNIINTPVR 1263 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~--------~G~I~IDG~di~~i~~~ 1263 (1428)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 36999999999999999999999999999999999999998 99999999999888888
Q ss_pred hHhcceEEEeCCcc-ccCCcHHHhcCcCCC-C-ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1264 DLRGRFAVVPQSPF-LFEGSLRDNLDPFHM-N-DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~-lf~gTIR~NLdp~~~-~-~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
.+|+.++++||++. +|+.|+++|+..... . ........-......+.++.+|+++.++.....||||||||++||||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 88889999999986 578899999965321 0 00000000001112344455577777777778999999999999999
Q ss_pred Hc---------cCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecCh
Q 000553 1341 LL---------KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1341 LL---------~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p 1408 (1428)
|+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|++|++++.|++
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCH
Confidence 99 59999999999999999999999999987643 7899999999999975 899999999999999999
Q ss_pred hHHhc
Q 000553 1409 QTLLQ 1413 (1428)
Q Consensus 1409 ~eLl~ 1413 (1428)
+++++
T Consensus 240 ~~~~~ 244 (272)
T PRK13547 240 ADVLT 244 (272)
T ss_pred HHHcC
Confidence 99875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=353.41 Aligned_cols=221 Identities=26% Similarity=0.423 Sum_probs=182.0
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC----CCceEEECCeeCCCCChHhHh
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----CGGQILVDGLNIINTPVRDLR 1266 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~----~~G~I~IDG~di~~i~~~~lR 1266 (1428)
.++++|++++| + .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.+++. .+..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~--~~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP--CALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc--ccccc
Confidence 58999999999 2 3699999999999999999999999999999999999999 99999999999863 22234
Q ss_pred cceEEEeCCcc-ccC--CcHHHhcCc----CC-CCChHHHHHHHHHccHHHHHHhCCCch---hhhcCCCCCChhHHHHH
Q 000553 1267 GRFAVVPQSPF-LFE--GSLRDNLDP----FH-MNDDLKIWSVLEKCHVKEEVEAVGLET---FVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1267 ~~i~~VpQdp~-lf~--gTIR~NLdp----~~-~~~d~ei~~aL~~~~l~~~i~~lgLdt---~v~e~G~~LSgGQrQrl 1335 (1428)
+.++|+||+|. .|. .|+.+|+.. .+ ...+++++++++.+ |++. .++.....||+|||||+
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAV---------GLENAARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHc---------CCCChhhhhhcCCcccCHHHHHHH
Confidence 67999999985 343 477777532 11 11233444444444 4443 45667778999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
+|||||+++|+||||||||++||..+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988643 7899999999999975 8999999999999999999998
Q ss_pred ccCCc-HHHHHHHh
Q 000553 1413 QDECS-VFSSFVRA 1425 (1428)
Q Consensus 1413 ~~~~s-~f~~l~~~ 1425 (1428)
+++.. .++.++..
T Consensus 230 ~~~~~~~~~~~~~~ 243 (254)
T PRK10418 230 NAPKHAVTRSLVSA 243 (254)
T ss_pred hCCCCHHHHHHHHh
Confidence 76544 45555543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=331.61 Aligned_cols=204 Identities=31% Similarity=0.407 Sum_probs=174.5
Q ss_pred CceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----------
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---------- 672 (1428)
...|+++++++++.. +.+++|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecCC------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 567999999999853 3459999999999999999999999999999999999999999999986
Q ss_pred ------cEEEEcCCCCCCcc-cHHHHHhcC----CCCChHHHH----HHHHHhcchHH-HhcccCCCcccccCCCCccch
Q 000553 673 ------SIAYVPQVPWILSG-TIRDNILFG----KNYDPQSYS----ETLKACTLDVD-ISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 673 ------~i~y~~Q~p~l~~~-ti~~nI~~g----~~~~~~~~~----~v~~~c~l~~d-i~~l~~gd~t~ig~~g~~LSG 736 (1428)
++|+++|+--||+. ||+||+.|. ...+++.++ .-+++++|..+ .+.+|. .|||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps-----------ELSG 148 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS-----------ELSG 148 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch-----------hhcc
Confidence 59999999999987 999999995 234554444 34678899887 666664 8999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCc-ccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEe
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 814 (1428)
|.+.|+|||||+..||+|+++|||||+|||.++..+- .++... ..-+-|+|+|||+++.+.. ||+|+++.||+|...
T Consensus 149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~-~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID-ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHH-HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 9999999999999999999999999999999777544 434321 1236799999999998765 899999999999999
Q ss_pred cChHHHHhcc
Q 000553 815 GSSADLAVSL 824 (1428)
Q Consensus 815 g~~~el~~~~ 824 (1428)
|+++|+.+.+
T Consensus 228 Gt~~el~~sd 237 (263)
T COG1127 228 GTPEELLASD 237 (263)
T ss_pred CCHHHHHhCC
Confidence 9999997654
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=317.72 Aligned_cols=199 Identities=29% Similarity=0.391 Sum_probs=171.4
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------cE
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~i 674 (1428)
+.++++.|+|... + -..+++|++||+++|+|||||||||||++|.|+..|.+|+|.++| .+
T Consensus 2 l~L~~V~~~y~~~---~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 2 LALDDVRFSYGHL---P-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPV 73 (231)
T ss_pred ccccceEEeeCcc---e-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCCh
Confidence 4567788888642 2 246799999999999999999999999999999999999999987 49
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCC-------CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHH
Q 000553 675 AYVPQVPWILSG-TIRDNILFGKN-------YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1428)
Q Consensus 675 ~y~~Q~p~l~~~-ti~~nI~~g~~-------~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalAR 746 (1428)
++++|+..||.- ||++||-+|.. .+.++.+.++...+|....+.+|. +|||||||||||||
T Consensus 74 SmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALAR 142 (231)
T COG3840 74 SMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALAR 142 (231)
T ss_pred hhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHH
Confidence 999999999976 99999999853 356778888888999988888886 89999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHHhc
Q 000553 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 747 aly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~~~ 823 (1428)
++.++.+|++||||||||||.-......-+..-...++.|+++|||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999999999999988877664221113467799999999998765 999999999999999999888643
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=325.67 Aligned_cols=217 Identities=26% Similarity=0.417 Sum_probs=188.0
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||.|+..-| ...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcce
Confidence 688999999976 334899999999999999999999999999999999999999999999999997754 567999999
Q ss_pred EeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
++-+.-++.. |+||||.+|+. .++.++. +.+.+..+.++++..+..+-.+||-|+|||++|||||.++|+|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 9977777754 99999988753 2333332 2233444555666666666668999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhhh-hcCEEEEEeCCeEEEecChhHHhccC
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~~-~~TvI~IaHrl~ti~-~~DrI~Vl~~G~ive~g~p~eLl~~~ 1415 (1428)
++||||||+||.-+.+.+++.|++... +++||+-+|.++.++ -||||+++.+|+++..|+++++.++.
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 999999999999999999999988764 999999999999999 59999999999999999999998754
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=354.37 Aligned_cols=215 Identities=20% Similarity=0.292 Sum_probs=177.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCeeCCCCChHhH-hcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDL-RGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~--~~~~G~I~IDG~di~~i~~~~l-R~~ 1268 (1428)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999963 46999999999999999999999999999999999994 7999999999999988776554 456
Q ss_pred eEEEeCCccccCC-cHHHhcCcCCC----------CChHHHHHHHHHccHHHHHHhCCCchh-hhcCCC-CCChhHHHHH
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFHM----------NDDLKIWSVLEKCHVKEEVEAVGLETF-VKESGI-SFSVGQRQLI 1335 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~~----------~~d~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~-~LSgGQrQrl 1335 (1428)
++++||+|.+|++ |+++|+..... .+.++.. + .+.+.++.+|++.. ...... .||+|||||+
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL---K--LLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH---H--HHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 9999999999987 89999853210 0111111 1 12344445577543 333333 4999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh--cCEEEEEeCCeEEEecChhHHh
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN--MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~--~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
+|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999999999999999999999999999998864 47899999999999986 7999999999999999998654
Q ss_pred c
Q 000553 1413 Q 1413 (1428)
Q Consensus 1413 ~ 1413 (1428)
.
T Consensus 234 ~ 234 (243)
T TIGR01978 234 E 234 (243)
T ss_pred c
Confidence 3
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=358.51 Aligned_cols=203 Identities=32% Similarity=0.412 Sum_probs=175.4
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------c
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~ 673 (1428)
.|+++|++..|.+. . +++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++| .
T Consensus 3 ~i~l~~v~K~yg~~-----~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 3 ELELKNVRKSFGSF-----E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred EEEEeeeEEEcCCc-----e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCC
Confidence 57899999998642 1 59999999999999999999999999999999999999999999987 5
Q ss_pred EEEEcCCCCCCcc-cHHHHHhcCCCCC-------hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 674 IAYVPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~~~-------~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
||+|+|+.-|+.. ||+|||.||.... +++.+++.+..++++-++..| ..||||||||||||
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAla 145 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALA 145 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHH
Confidence 9999999998865 9999999986542 467788888888888776655 48999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHhcc
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSL 824 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~~~ 824 (1428)
||+.++|+++|||||+|+||++....+-..+..-....+.|+|.||||..... -||+|++|++|+|.+.|++.|+....
T Consensus 146 RAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 146 RALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999998887766532211234679999999987754 59999999999999999999997543
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=356.38 Aligned_cols=231 Identities=22% Similarity=0.329 Sum_probs=189.7
Q ss_pred cEEEEEEEEEECCC-------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh-
Q 000553 1191 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV- 1262 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~- 1262 (1428)
.|+++||+++|+.+ .+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 48999999999741 3579999999999999999999999999999999999999999999999999987765
Q ss_pred --HhHhcceEEEeCCcc--ccC-CcHHHhcCcC-CCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHH
Q 000553 1263 --RDLRGRFAVVPQSPF--LFE-GSLRDNLDPF-HMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1263 --~~lR~~i~~VpQdp~--lf~-gTIR~NLdp~-~~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl 1335 (1428)
..+|+.++++||++. +++ .|+++|+... ....+ +...-....+.+.++.+|+++ ..+.....||+|||||+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS--LDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 346889999999983 443 5999997431 10000 001111223455666668874 56777789999999999
Q ss_pred HHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1336 ~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
+|||||+++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 999999999999999999999999999999999987643 7899999999999986 8999999999999999999998
Q ss_pred ccCCcHHHHHHH
Q 000553 1413 QDECSVFSSFVR 1424 (1428)
Q Consensus 1413 ~~~~s~f~~l~~ 1424 (1428)
.. ++.|..-+.
T Consensus 241 ~~-~~~~~~~~~ 251 (268)
T PRK10419 241 TF-SSPAGRVLQ 251 (268)
T ss_pred CC-CCHHHHHHH
Confidence 64 445544443
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=353.71 Aligned_cols=213 Identities=38% Similarity=0.661 Sum_probs=192.1
Q ss_pred CCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcCcEEEEcCC
Q 000553 601 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1428)
Q Consensus 601 ~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~~i~y~~Q~ 680 (1428)
+.+..++++|+++.+ . .+|+|+||++++|++++|+|+||||||||+++|+|.++|.+|+|.++|.|+|++|+
T Consensus 35 ~~~~~l~i~nls~~~-----~---~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~ 106 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----A---PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQF 106 (282)
T ss_pred CCCCeEEEEEEEEec-----c---cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCc
Confidence 345679999999952 1 25999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCC
Q 000553 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV 760 (1428)
Q Consensus 681 p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep 760 (1428)
+++++.|++||+.++..+++.++..+++++++...+..+|.+.++.+++++.+||||||||++||||++.+|+++|||||
T Consensus 107 ~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 107 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred ccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999999999999866666677788888999888999999998999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHh
Q 000553 761 LSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 761 ~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
|++||+.+.+.+.+.++.. +.+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 187 t~gLD~~~~~~l~~~ll~~-~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 187 FGYLDVFTEKEIFESCVCK-LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CccCCHHHHHHHHHHHHHH-hhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999988887754322 345789999999999998999999999999999999988764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=354.07 Aligned_cols=205 Identities=28% Similarity=0.363 Sum_probs=173.1
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 4699999999999999999999999999999999999999999999999998642 346899
Q ss_pred EeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||++.+|+ .|+++|+.... .....+.. ....+.++.+|++........+||||||||++|||||+++|++
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999887 59999996431 11221111 1233445555676656666778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEe--CCeEEEecCh
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILD--HGHLVEQGNP 1408 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~--~G~ive~g~p 1408 (1428)
|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|+ +|++++.+++
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999998863 48999999999999876 89999998 5999998754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=350.17 Aligned_cols=212 Identities=27% Similarity=0.378 Sum_probs=173.5
Q ss_pred EEEEEEEEEECCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCeeCCCCChHhHh
Q 000553 1192 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLR 1266 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR 1266 (1428)
++|+||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ....|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999765 3689999999999999999999999999999999999999 99999999999885 34678
Q ss_pred cceEEEeCCccccCC-cHHHhcCcCCC-CChHHHHHHHHHccHHH-HHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1267 GRFAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKE-EVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1267 ~~i~~VpQdp~lf~g-TIR~NLdp~~~-~~d~ei~~aL~~~~l~~-~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
++++++||++.+|++ |+++|+.+... ..........+.....+ .++.++++.........||+|||||++|||||++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 899999999999987 99999974311 00000011111111122 3444466655556667899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccCh-hhhh-hcCEEEEEeCCeEEEec
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRI-STVL-NMDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl-~ti~-~~DrI~Vl~~G~ive~g 1406 (1428)
+|+||||||||++||+.+.+.+.+.|++.. +++|+|+++|++ +.+. .||+|++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999998764 478999999998 4554 58999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=340.20 Aligned_cols=200 Identities=30% Similarity=0.458 Sum_probs=169.1
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----------c
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------S 673 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------~ 673 (1428)
..|+++|++|.|... + +|+||||++++|++++|+||||||||||+|+|+|.++|.+|+|.+.| +
T Consensus 3 ~~i~v~nl~v~y~~~---~---vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNR---P---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76 (254)
T ss_pred cEEEEeeeEEEECCE---e---eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCe
Confidence 368999999999742 2 49999999999999999999999999999999999999999999865 5
Q ss_pred EEEEcCCC---CCCcccHHHHHhcCCCC-----------ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHH
Q 000553 674 IAYVPQVP---WILSGTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1428)
Q Consensus 674 i~y~~Q~p---~l~~~ti~~nI~~g~~~-----------~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQk 739 (1428)
||||||.. |-|..||+|-+.+|... |.+..+++++..++. |+. ...-.+|||||+
T Consensus 77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~----------~r~i~~LSGGQ~ 145 (254)
T COG1121 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLR----------DRQIGELSGGQK 145 (254)
T ss_pred EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhh----------CCcccccCcHHH
Confidence 99999965 77889999999988432 346777888888876 333 223347999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChH
Q 000553 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 740 qRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 818 (1428)
|||-|||||.++||+|+|||||+++|+.++..+++- +.....+|+||++||||++.+. ++|+|+.|+ +++...|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l-L~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL-LKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence 999999999999999999999999999999988875 3332334899999999999876 599999995 5678889988
Q ss_pred HHHh
Q 000553 819 DLAV 822 (1428)
Q Consensus 819 el~~ 822 (1428)
+..+
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=336.30 Aligned_cols=195 Identities=28% Similarity=0.361 Sum_probs=160.0
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|++-.|...... ..+|+++||+|++||+++|+|||||||||||+.|.|...|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~--~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEK--VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcc--eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 3567777777654322 4579999999999999999999999999999999999999999999886
Q ss_pred ----cEEEEcCCCCCCc-ccHHHHHhcC----CCCC---hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHH
Q 000553 673 ----SIAYVPQVPWILS-GTIRDNILFG----KNYD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1428)
Q Consensus 673 ----~i~y~~Q~p~l~~-~ti~~nI~~g----~~~~---~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkq 740 (1428)
+|||++|+..|.. -|++|||.+. .... .++.+..++..+|.+... ..+...|||||||
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQ 149 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQ 149 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHH
Confidence 4999999998765 5999999853 2221 345555666666654433 2345689999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEE
Q 000553 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1428)
Q Consensus 741 RvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 812 (1428)
|||||||++.+|++++.||||.+||.++++.|++.+......+|+|+|+|||+.+....|||++.|+||++.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999863322134578999999999999999999999999854
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=352.58 Aligned_cols=226 Identities=22% Similarity=0.358 Sum_probs=187.2
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCee-----CCCCChHh-
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN-----IINTPVRD- 1264 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~d-----i~~i~~~~- 1264 (1428)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 5899999999964 358999999999999999999999999999999999999999999999988 77666543
Q ss_pred ---HhcceEEEeCCcc--cc-CCcHHHhcCc----CCCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000553 1265 ---LRGRFAVVPQSPF--LF-EGSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1333 (1428)
Q Consensus 1265 ---lR~~i~~VpQdp~--lf-~gTIR~NLdp----~~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQ 1333 (1428)
+++.++++||+|. ++ ..|+.+|+.. .......+. ...+.+.++.+|++ +..+.....|||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCChhhhhcCchhcCHHHHH
Confidence 3467999999985 22 3588888731 111111111 12344566667886 5677788899999999
Q ss_pred HHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhH
Q 000553 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1334 rl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~e 1410 (1428)
|++|||||+++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|+|+++.+.. ||++++|++|++++.|++++
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~ 235 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQ 235 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998764 37899999999999986 89999999999999999999
Q ss_pred HhccCCcHHHHHH
Q 000553 1411 LLQDECSVFSSFV 1423 (1428)
Q Consensus 1411 Ll~~~~s~f~~l~ 1423 (1428)
+..++...|.+++
T Consensus 236 ~~~~~~~~~~~~~ 248 (253)
T TIGR02323 236 VLDDPQHPYTQLL 248 (253)
T ss_pred HhcCCCCHHHHHH
Confidence 9876655555544
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=367.19 Aligned_cols=212 Identities=24% Similarity=0.368 Sum_probs=181.2
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----ChHhHhc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRDLRG 1267 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i----~~~~lR~ 1267 (1428)
|++ |++++|+.. .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 23 99999999999999999999999999999999999999999999998653 2445678
Q ss_pred ceEEEeCCccccCC-cHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1268 RFAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1268 ~i~~VpQdp~lf~g-TIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
+++|+||++.+|+. |+++|+.+... ..++++.+ .++.+|++........+||||||||++|||||+++|
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~---------~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDK---------IVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHH---------HHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999975 99999975422 12233333 344446666666677789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCc
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1417 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s 1417 (1428)
++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++..
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 99999999999999999999999987653 7899999999998876 899999999999999999999988753
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=343.72 Aligned_cols=201 Identities=22% Similarity=0.378 Sum_probs=170.9
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++||+++|+. .++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..|+++++
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987643 46788999
Q ss_pred EeCCccccCC-cHHHhcCcC-CC-C-----ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1272 VPQSPFLFEG-SLRDNLDPF-HM-N-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~-~~-~-----~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
+||+|.+|.+ |+++|+... .. . .++++.++++. +|++........+||+|||||++||||+++
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQ---------VGIADYLDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHH---------cCcHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999875 999998632 11 1 11233334444 455544555566899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecC
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1407 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~ 1407 (1428)
+|+|+||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999998864 37899999999999876 89999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=367.79 Aligned_cols=215 Identities=23% Similarity=0.365 Sum_probs=182.3
Q ss_pred EEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC----hHhHhcceEE
Q 000553 1196 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP----VRDLRGRFAV 1271 (1428)
Q Consensus 1196 nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~----~~~lR~~i~~ 1271 (1428)
|++++|+.. .+ |+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 34 999999999999999999999999999999999999999999999986532 3456889999
Q ss_pred EeCCccccCC-cHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1349 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILl 1349 (1428)
+||++.+|++ |+++|+.+... ....+. .....+.++.+|++...+.....||||||||++|||||+++|++||
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999986 99999975322 111111 1123345555577777777778999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHH
Q 000553 1350 LDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1350 LDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f 1419 (1428)
|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++...|
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999999999999999999987643 7899999999999876 89999999999999999999998776544
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=353.47 Aligned_cols=224 Identities=25% Similarity=0.400 Sum_probs=185.1
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCeeCCCC-----Ch
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLNIINT-----PV 1262 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~---~G~I~IDG~di~~i-----~~ 1262 (1428)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999963 46999999999999999999999999999999999999986 49999999998654 24
Q ss_pred HhHhcceEEEeCCccccCC-cHHHhcCcCCCC-----------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChh
Q 000553 1263 RDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMN-----------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVG 1330 (1428)
Q Consensus 1263 ~~lR~~i~~VpQdp~lf~g-TIR~NLdp~~~~-----------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgG 1330 (1428)
..+|++++|+||++.+|++ |+++|+...... .+++. .....+.++.+|++.........||+|
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G 156 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ-----KQRALQALTRVGMVHFAHQRVSTLSGG 156 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHH-----HHHHHHHHHHcCCHHHHhCCccccCHH
Confidence 5678899999999998875 999999643110 01110 112334445556765566677789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecC
Q 000553 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1407 (1428)
Q Consensus 1331 QrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~ 1407 (1428)
||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~ 236 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998864 37899999999998765 89999999999999999
Q ss_pred hhHHhccCCcHHHHHHH
Q 000553 1408 PQTLLQDECSVFSSFVR 1424 (1428)
Q Consensus 1408 p~eLl~~~~s~f~~l~~ 1424 (1428)
++++ .+ ....+++.
T Consensus 237 ~~~~-~~--~~~~~~~~ 250 (262)
T PRK09984 237 SQQF-DN--ERFDHLYR 250 (262)
T ss_pred HHHh-cc--HHHHHHHh
Confidence 9997 32 24555553
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=325.39 Aligned_cols=225 Identities=24% Similarity=0.388 Sum_probs=195.7
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH-hcc
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGR 1268 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~ 1268 (1428)
+.+..+|+..+|.. .+|+++|||+|++||.||+.|||||||||.+.++.|+++|++|+|.+||.||+.+|.+.- |-.
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 46788999999964 479999999999999999999999999999999999999999999999999999998653 556
Q ss_pred eEEEeCCccccCC-cHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
|+|+||||.+|.+ ||+|||...-+..+.+.+.+-++..+.+.++.+++...-...|..||||||+|+-|||||..+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 9999999999987 999998644333222233344555566677777777777788889999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChh-hhhhcCEEEEEeCCeEEEecChhHHhccCC
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIS-TVLNMDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~-ti~~~DrI~Vl~~G~ive~g~p~eLl~~~~ 1416 (1428)
++||||.|++||-+-..||+.|+... +|--|++.-|... |+.-|||.+++.+|+|...|+|+|+.+|+.
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~ 231 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChh
Confidence 99999999999999999999998764 5778999999976 556699999999999999999999999864
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=346.88 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=176.2
Q ss_pred EEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH---hHh
Q 000553 1192 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1266 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1266 (1428)
++++|++++|+++. +.+|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997532 5699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cceEEEeCCccccC-CcHHHhcCcCCC----CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1267 GRFAVVPQSPFLFE-GSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1267 ~~i~~VpQdp~lf~-gTIR~NLdp~~~----~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
+.++++||+|.+|. .|+.+|+.+... .+.++..+ ...+.++.+|++........+||+|||||++||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 89999999999987 699999975321 22222211 123455556777667777789999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeCCeE
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHL 1402 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~i 1402 (1428)
+++|++|||||||++||.++.+.+.+.|++.. .++|+|+|+|+++....||+|++|++|++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999998765 37999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=325.44 Aligned_cols=205 Identities=25% Similarity=0.341 Sum_probs=172.7
Q ss_pred CceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCC-----eEEEEcC-----
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-----GSIHASG----- 672 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~-----G~i~~~~----- 672 (1428)
...++++|.++.|.. ..+|+|||++|++++++|++|||||||||||+++....+... |+|.++|
T Consensus 5 ~~~~~~~~l~~yYg~------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGD------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECc------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 356889999998863 235999999999999999999999999999999998877665 8998876
Q ss_pred ----------cEEEEcCCCCCCcccHHHHHhcCCCC---C----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccc
Q 000553 673 ----------SIAYVPQVPWILSGTIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1428)
Q Consensus 673 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~~---~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LS 735 (1428)
+||+|+|.|--|..||.|||.+|... . ++..++.++..+|-+..+ ....+.+..||
T Consensus 79 ~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK-------DrL~~sa~~LS 151 (253)
T COG1117 79 PKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-------DRLHKSALGLS 151 (253)
T ss_pred CCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH-------HHhhCCccCCC
Confidence 59999999999999999999998532 1 244666677777765543 23456788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEe
Q 000553 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1428)
Q Consensus 736 GGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 814 (1428)
|||+||++||||+.-+|+|+|||||||||||.+..+|-+. +.. +.++-|+|+|||+++.... +|+...+-+|+++|.
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeL-i~e-Lk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEEL-ITE-LKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHH-HHH-HHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence 9999999999999999999999999999999988887765 433 4556699999999998665 899999999999999
Q ss_pred cChHHHHh
Q 000553 815 GSSADLAV 822 (1428)
Q Consensus 815 g~~~el~~ 822 (1428)
|+.+++..
T Consensus 230 g~T~~iF~ 237 (253)
T COG1117 230 GPTDKIFT 237 (253)
T ss_pred cCHHhhhc
Confidence 99888753
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=346.57 Aligned_cols=212 Identities=29% Similarity=0.449 Sum_probs=185.4
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPDG----PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCCC----ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 36789999986321 2359999999999999999999999999999999999999999999876
Q ss_pred cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000553 673 SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1428)
Q Consensus 673 ~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 751 (1428)
.++|++|++++++.|++||+.++.. ...++..+.++..++..-++.+|.|.++..+..+.+|||||||||+||||++.+
T Consensus 77 ~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 77 QVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred cEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 3899999999999999999988653 344455556666777777888998888888889999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHhc
Q 000553 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 752 ~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~~ 823 (1428)
|+++||||||++||+...+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRN-MHD-ICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999988886 433 3357899999999999988999999999999999999887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=389.73 Aligned_cols=226 Identities=24% Similarity=0.345 Sum_probs=156.7
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHh------cCC---CCCCce------------
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF------RLT---PICGGQ------------ 1249 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~------rl~---~~~~G~------------ 1249 (1428)
.++++|++. ..|+|+|++|++||.+||+|.+|||||||+.-++ ++. .+..+.
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 588888852 2599999999999999999999999999998764 111 122222
Q ss_pred EEECCeeCCCCC----------hHhHhcceE---------EEeCCccccC-----------CcHHHhcCcCCC-------
Q 000553 1250 ILVDGLNIINTP----------VRDLRGRFA---------VVPQSPFLFE-----------GSLRDNLDPFHM------- 1292 (1428)
Q Consensus 1250 I~IDG~di~~i~----------~~~lR~~i~---------~VpQdp~lf~-----------gTIR~NLdp~~~------- 1292 (1428)
|.||..++..-+ .+.+|.-.+ +-++.-.+.+ |+++.|+.+...
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 444444433211 123333332 2222211111 355555433211
Q ss_pred -----------------CChH-----HHHHHHHHc----cH---HHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1293 -----------------NDDL-----KIWSVLEKC----HV---KEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1293 -----------------~~d~-----ei~~aL~~~----~l---~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
.+-. .+.++++-. ++ .+.++.+||+. .++.....||||||||+.|||+|+
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~ 846 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELS 846 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHh
Confidence 0111 122222221 11 22344448875 467778899999999999999999
Q ss_pred cCC---CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhcCEEEEE------eCCeEEEecChhHHh
Q 000553 1343 KSS---KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1343 ~~~---~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl------~~G~ive~g~p~eLl 1412 (1428)
++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++.
T Consensus 847 ~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 847 KRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred cCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999 9999999999999999999999998764 588999999999999999999999 799999999999999
Q ss_pred ccCCcHHHHHH
Q 000553 1413 QDECSVFSSFV 1423 (1428)
Q Consensus 1413 ~~~~s~f~~l~ 1423 (1428)
+++.|.=.+.+
T Consensus 927 ~~~~s~t~~~l 937 (943)
T PRK00349 927 KVEASYTGRYL 937 (943)
T ss_pred hCcccHHHHHH
Confidence 88765444443
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=339.34 Aligned_cols=201 Identities=29% Similarity=0.394 Sum_probs=168.8
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
|.+++.+..|+.- .+++|||++|+.||++++.|||||||||||++|+|...|++|.|.++|
T Consensus 3 i~i~~~~~~~~~~------~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~ 76 (345)
T COG1118 3 IRINNVKKRFGAF------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76 (345)
T ss_pred eeehhhhhhcccc------cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhh
Confidence 5666777667542 348999999999999999999999999999999999999999999886
Q ss_pred -cEEEEcCCCCCCc-ccHHHHHhcCCCC---------ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 -SIAYVPQVPWILS-GTIRDNILFGKNY---------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~-~ti~~nI~~g~~~---------~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
+||||.|+.-+|. .||.|||.||.+. ...+..+.++.|.|+.--+ .....||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHH
Confidence 4999999998875 5999999999632 2345667788888865333 3456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC-CceEEEEccCcchh-hcCCEEEEEeCCeEEEecChHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSAD 819 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~-~~t~ilvth~~~~l-~~ad~i~~l~~G~i~~~g~~~e 819 (1428)
||||||+...|++|||||||+|||+++.+.+-+.+. .-..+ +.|+|+||||.++. ..||+|++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr-~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR-KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHH-HHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHH
Confidence 999999999999999999999999999887766632 21223 67999999999885 5699999999999999999999
Q ss_pred HHhcc
Q 000553 820 LAVSL 824 (1428)
Q Consensus 820 l~~~~ 824 (1428)
+....
T Consensus 225 v~~~P 229 (345)
T COG1118 225 VYDHP 229 (345)
T ss_pred HhcCC
Confidence 96543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=357.83 Aligned_cols=204 Identities=27% Similarity=0.393 Sum_probs=175.3
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|++-+|.. ..+++|+||+|++||++++.|||||||||+|++|+|+..|++|+|.++|
T Consensus 4 ~~l~i~~v~k~yg~------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR 77 (352)
T COG3842 4 PALEIRNVSKSFGD------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77 (352)
T ss_pred ceEEEEeeeeecCC------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhc
Confidence 46899999998862 2459999999999999999999999999999999999999999999987
Q ss_pred cEEEEcCCCCCCcc-cHHHHHhcCCCC----C-h---HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHH
Q 000553 673 SIAYVPQVPWILSG-TIRDNILFGKNY----D-P---QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1428)
Q Consensus 673 ~i~y~~Q~p~l~~~-ti~~nI~~g~~~----~-~---~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 743 (1428)
.|++|+|+.-||.- ||+|||.||... . + +++.++++..+|+.-- ..+...||||||||||
T Consensus 78 ~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVA 146 (352)
T COG3842 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVA 146 (352)
T ss_pred ccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHH
Confidence 59999999999865 999999999652 2 2 3677777777776533 3456699999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcch-hhcCCEEEEEeCCeEEEecChHHHHh
Q 000553 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 744 lARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
|||||..+|+++|||||+||||.+.++++-..+.......|.|.|+||||.+. +..+|+|++|++|+|.+.|+++|+..
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999999999999999999999999888776433323448899999999876 67799999999999999999999975
Q ss_pred cc
Q 000553 823 SL 824 (1428)
Q Consensus 823 ~~ 824 (1428)
..
T Consensus 227 ~P 228 (352)
T COG3842 227 RP 228 (352)
T ss_pred Cc
Confidence 43
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=329.18 Aligned_cols=171 Identities=44% Similarity=0.760 Sum_probs=161.8
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+...+++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000553 1272 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351 (1428)
Q Consensus 1272 VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLD 1351 (1428)
+||+|.+|+.|++||+ ||+|||||++||||++++|++||||
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~llllD 121 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------LSGGQRQRIAIARALLRDPPILILD 121 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999997 9999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCe
Q 000553 1352 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1401 (1428)
Q Consensus 1352 EaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1401 (1428)
|||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 122 EP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 122 EATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999988767899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=342.52 Aligned_cols=204 Identities=31% Similarity=0.407 Sum_probs=174.1
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... ++.+++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 46999999999999999999999999999999999999999999999999875422 357999
Q ss_pred EeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||++.+|. .|+++|+.... ..+++++.++++.. |++........+||+|||||++||||++++|++
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIV---------DLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHc---------CCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998886 59999986421 22334444444444 454444455568999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhH
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~e 1410 (1428)
|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|++.+
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999998764 47899999999999865 89999999999999999875
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=338.33 Aligned_cols=224 Identities=27% Similarity=0.456 Sum_probs=181.3
Q ss_pred EEEEEEEEEECCCC--CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-C----CCceEEECCeeCCCCChHh
Q 000553 1192 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-I----CGGQILVDGLNIINTPVRD 1264 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~-~----~~G~I~IDG~di~~i~~~~ 1264 (1428)
++++|++..|.... ..+++||||+|++||.+||||.|||||||+.++|+|+++ | .+|+|.+||.|+.+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 58899999997543 468999999999999999999999999999999999998 3 5799999999999999875
Q ss_pred H---h-cceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHc-----------cHHHHHHhCCCch---hhhcCCCC
Q 000553 1265 L---R-GRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC-----------HVKEEVEAVGLET---FVKESGIS 1326 (1428)
Q Consensus 1265 l---R-~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~-----------~l~~~i~~lgLdt---~v~e~G~~ 1326 (1428)
+ | +.|++|||||. .-|+|.-.. .+++.++++.- ...+.++..|++. .+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~-------~sLnPv~~I-g~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPM-------TSLNPVMTI-GDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCch-------hhcCChhhH-HHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence 4 3 47999999995 122222111 11222222211 0112233335543 56777889
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEE
Q 000553 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLV 1403 (1428)
Q Consensus 1327 LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~iv 1403 (1428)
||||||||+.||-||+.+|++||-||||++||..+.+.|.+.|++.. .+.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999998765 48999999999999876 8999999999999
Q ss_pred EecChhHHhccCCcHHHHHH
Q 000553 1404 EQGNPQTLLQDECSVFSSFV 1423 (1428)
Q Consensus 1404 e~g~p~eLl~~~~s~f~~l~ 1423 (1428)
|.|+.+++++++.-.|.+.+
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999999876666543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=341.92 Aligned_cols=211 Identities=28% Similarity=0.440 Sum_probs=187.8
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+.. ..+++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~-----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDEK-----KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCCC-----CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 47899999998631 1359999999999999999999999999999999999999999998875
Q ss_pred -cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000553 673 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 750 (1428)
.++|++|+++++++|++||+.++.+ ...++..+.++.++++..++.+|.|.++..+....+|||||||||+||||+++
T Consensus 77 ~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 77 SMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred hhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 3899999999999999999998754 34556677788889988899999999999999999999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHh
Q 000553 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 751 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.++.||++++|++|++.+.|+.+++..
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEA-LEK-LMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999988876 433 345789999999999998899999999999999999887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=327.77 Aligned_cols=170 Identities=32% Similarity=0.562 Sum_probs=157.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+. .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998766 677889999
Q ss_pred EeCCccccCC-cHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1350 (1428)
Q Consensus 1272 VpQdp~lf~g-TIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlL 1350 (1428)
+||+|.+|.+ |+++|+. ||+|||||++|||||+++|+|+||
T Consensus 78 ~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 78 LPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred EecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999887 9999973 999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeE
Q 000553 1351 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1402 (1428)
Q Consensus 1351 DEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1402 (1428)
||||++||..+.+.+.+.|++.. ++.|+|++||+.+.+.. ||+|++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999998764 46899999999999885 799999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=345.95 Aligned_cols=214 Identities=27% Similarity=0.359 Sum_probs=191.1
Q ss_pred CceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----------
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---------- 672 (1428)
...++++|+++.|+... ..+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 17 GGEIKIHDLCVRYENNL----KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred CceEEEEEEEEEeCCCC----CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH
Confidence 46799999999996421 2359999999999999999999999999999999999999999999865
Q ss_pred ---cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000553 673 ---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly 749 (1428)
.++||+|+|+++++|++||+........+.+..+++..++...++.+|.|.++.+++.+.+||||||||++||||++
T Consensus 93 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 93 LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 48999999999999999999765444556677788888999899999999999999999999999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHh
Q 000553 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 750 ~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
++|+++||||||++||+++.+.+++. +.. +.+++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~-l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKV-VMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHH-HHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999998877765 433 345789999999999998999999999999999999988764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=334.44 Aligned_cols=185 Identities=23% Similarity=0.353 Sum_probs=163.9
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCeeCCCCChHhH-hcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL--TPICGGQILVDGLNIINTPVRDL-RGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl--~~~~~G~I~IDG~di~~i~~~~l-R~~ 1268 (1428)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 4699999999999999999999999999999999999 58999999999999998876554 566
Q ss_pred eEEEeCCccccCC-cHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
++|+||+|.+|++ |+++|++ ....+||+|||||++||||++++|+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~---------------------------------~~~~~LS~G~~qrv~laral~~~p~i 125 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR---------------------------------YVNEGFSGGEKKRNEILQLLLLEPDL 125 (200)
T ss_pred EEEeecChhhccCccHHHHHh---------------------------------hccccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999886 5666550 01136999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhh--hcCEEEEEeCCeEEEecChhHHh
Q 000553 1348 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL--NMDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~--~~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
++|||||++||..+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 126 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 126 AILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999998764 3789999999999998 58999999999999999 66664
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=339.56 Aligned_cols=203 Identities=26% Similarity=0.391 Sum_probs=171.0
Q ss_pred EEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----ChHhHhcc
Q 000553 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRDLRGR 1268 (1428)
Q Consensus 1193 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i----~~~~lR~~ 1268 (1428)
++ |++++|+.. .+ |+||+|++ |.+||+|+||||||||+++|.|+++|++|+|.+||.++... +....|++
T Consensus 3 ~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 45 899999753 34 99999999 99999999999999999999999999999999999998643 33457889
Q ss_pred eEEEeCCccccCC-cHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
++++||++.+|++ |+++|+..... ..+++ ......+.++.+|++.........||+|||||++||||++++|+
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999865 99999974321 11111 11123445555677776777788999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999987643 7899999999999875 8999999999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=339.85 Aligned_cols=203 Identities=30% Similarity=0.409 Sum_probs=175.8
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|.+|.|+.+ ..+|+|+|+++++|+.++|+|+||||||||++.+.|.++|++|.|.++|
T Consensus 3 ~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 3 MIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred eEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 47889999999754 2459999999999999999999999999999999999999999998765
Q ss_pred --cEEEEcCCC--CCCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 --SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 --~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
++|||.|+| .++..||.|.|.||.. .++ ++.+++++.|++....+.. ..+||||||||
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqR 146 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQR 146 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceee
Confidence 499999999 7899999999999854 333 4567788888887664443 35899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el 820 (1428)
||||.+|..+|+++|||||||+||+...+.+++.+..-....++|+|++||+++.+.. ||++++|++|+++.+|++.++
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999886432212336899999999999876 999999999999999999887
Q ss_pred Hhc
Q 000553 821 AVS 823 (1428)
Q Consensus 821 ~~~ 823 (1428)
.+.
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 653
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=328.46 Aligned_cols=172 Identities=33% Similarity=0.510 Sum_probs=159.2
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC--hHhHhcce
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDLRGRF 1269 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~--~~~lR~~i 1269 (1428)
|+++|++++|+. +++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 46999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEeCCccccCC-cHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~IL 1348 (1428)
+|+||+|.+|.+ |+++|+... ||+|||||++|||||+++|+++
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~p~ll 122 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMDPDVL 122 (178)
T ss_pred EEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCCCCEE
Confidence 999999998865 999998643 9999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCe
Q 000553 1349 CLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGH 1401 (1428)
Q Consensus 1349 lLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1401 (1428)
||||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999987654 6899999999999985 89999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=338.64 Aligned_cols=206 Identities=32% Similarity=0.443 Sum_probs=185.1
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+... ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSLRYRPNL----PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred cEEEEEEEEecCCCC----cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 378999999996421 2359999999999999999999999999999999999999999998865
Q ss_pred -cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000553 673 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 751 (1428)
.++|++|+|.+++.|++|||.+....+.++..+.++..++...+..+|.|.++..++.+.+||||||||++||||++.+
T Consensus 78 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 78 SRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred hhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999987766667777788888999988999999999999999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecC
Q 000553 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 752 ~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 816 (1428)
|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKT-IRE-AFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999988776 433 344689999999999999999999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=343.13 Aligned_cols=209 Identities=26% Similarity=0.408 Sum_probs=177.5
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 5899999999964 4699999999999999999999999999999999999999999999987 35799
Q ss_pred EEeCCccccC---CcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1271 VVPQSPFLFE---GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1271 ~VpQdp~lf~---gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
|+||+|.++. .|+++|+......+++++.++++.+++.+. +......||+|||||++||||++++|++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---------~~~~~~~LSgGq~qrv~laral~~~p~l 141 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHL---------IDAPMQKLSGGETQRVLLARALLNRPQL 141 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHH---------HhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998765 389999754333345566666666655443 3444567999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHHHHH
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~~ 1424 (1428)
|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++ ++++.|+++++.++ ..|.+++.
T Consensus 142 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~~~ 218 (251)
T PRK09544 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISMFG 218 (251)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHHhC
Confidence 999999999999999999999987643 7899999999999865 899999965 79999999998753 35666653
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=334.15 Aligned_cols=190 Identities=24% Similarity=0.342 Sum_probs=162.1
Q ss_pred cEEEEEEEEEECCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCeeCCCCChHhH
Q 000553 1191 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDL 1265 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~---~~~G~I~IDG~di~~i~~~~l 1265 (1428)
.+.++||+|.|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 46899999999753 5679999999999999999999999999999999999999 89999999999998765 456
Q ss_pred hcceEEEeCCccccCC-cHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000553 1266 RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1266 R~~i~~VpQdp~lf~g-TIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~ 1344 (1428)
|++++++||++.+|++ |+++|+...... . ..+....||+|||||++|||||+++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~----------------~~~~~~~LS~Ge~qrl~laral~~~ 136 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K----------------GNEFVRGISGGERKRVSIAEALVSR 136 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c----------------cccchhhCCHHHHHHHHHHHHHhhC
Confidence 8899999999988875 999999643110 0 1223347999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEec-cChhhhh-hcCEEEEEeCCeEEEec
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIA-HRISTVL-NMDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1345 ~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~Ia-Hrl~ti~-~~DrI~Vl~~G~ive~g 1406 (1428)
|++|||||||++||+++.+.+.+.|++..+ +.|+|+++ |+.+.+. .||+|++|++|++++.|
T Consensus 137 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999988653 56766654 5566665 58999999999998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=340.76 Aligned_cols=212 Identities=32% Similarity=0.487 Sum_probs=187.2
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+... .++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGDG----PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCCC----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 35788999886321 2359999999999999999999999999999999999999999998865
Q ss_pred cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000553 673 SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1428)
Q Consensus 673 ~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 751 (1428)
.++|++|+|++++.|++||+.++.. +.++.+.+..+.+.+.+.++.+|.|.++..+..+.+||||||||++||||++.+
T Consensus 77 ~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 77 QIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred hEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 3899999999999999999998753 455667777788888888999998888889999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHhc
Q 000553 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 752 ~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~~ 823 (1428)
|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAA-LER-LMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 999999999999999999988776 433 3457899999999999988999999999999999998887644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=347.66 Aligned_cols=209 Identities=25% Similarity=0.373 Sum_probs=172.4
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...+++++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999633 469999999999999999999999999999999999999999999999998752 12234699
Q ss_pred EEeCCccc---cCCcHHHhcCcCCC-------CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000553 1271 VVPQSPFL---FEGSLRDNLDPFHM-------ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1336 (1428)
Q Consensus 1271 ~VpQdp~l---f~gTIR~NLdp~~~-------~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1336 (1428)
|+||+|.+ +..++++|+..... .. ++.+.++++. +|++.........||||||||++
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~gl~~~~~~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR---------VDMVEFRHRQIGELSGGQKKRVF 152 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHH---------cCChhHhcCCcccCCHHHHHHHH
Confidence 99999865 45689999753210 01 1123333333 35544445556689999999999
Q ss_pred HHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1337 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1337 LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+++++ +|++++.|+++++.+
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999999998764 47899999999998865 7999777 899999999999864
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=340.45 Aligned_cols=211 Identities=30% Similarity=0.482 Sum_probs=184.8
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------c
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-------------~ 673 (1428)
+++|+++.|+.... .++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 2 ~i~~l~~~~~~~~~---~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 2 EFKNVSFRYPSRPD---VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred eEEEEEEecCCCCC---ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhh
Confidence 57889998864211 2359999999999999999999999999999999999999999998876 3
Q ss_pred EEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCC
Q 000553 674 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752 (1428)
Q Consensus 674 i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~ 752 (1428)
++|++|+|++++.|++||+.++.. ...+.....++.+++...+..+|.|.++..+....+||||||||++||||++.+|
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 79 IGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999999998999999998753 3445556677778888888899998888888999999999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHh
Q 000553 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 753 ~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
+++||||||++||+...+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~-l~~-~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEA-LDR-AMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999988876 433 236789999999999998999999999999999998877653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=328.63 Aligned_cols=172 Identities=30% Similarity=0.502 Sum_probs=156.5
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh-HhHhcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i 1269 (1428)
.++++|++++| +|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988763 4568899
Q ss_pred EEEeCCc---ccc-CCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1270 AVVPQSP---FLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1270 ~~VpQdp---~lf-~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
+|+||+| .++ ..|++||+..... ||+|||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~al~~~p 123 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARWLARDP 123 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHHHccCC
Confidence 9999995 344 5699999864210 9999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeE
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1402 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~i 1402 (1428)
++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 124 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 124 RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999998764 47999999999999987 899999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=339.55 Aligned_cols=210 Identities=30% Similarity=0.485 Sum_probs=185.3
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+.. ..+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~-----~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDPG-----RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 (236)
T ss_pred CEEEEEEEEeCCC-----CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh
Confidence 3578899988532 2359999999999999999999999999999999999999999999876
Q ss_pred cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000553 673 SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1428)
Q Consensus 673 ~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 751 (1428)
.++|++|+|++++.|++||+.++.. ...+.....++.+++...+..+|.|.++.++.++.+||||||||++||||++.+
T Consensus 76 ~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~ 155 (236)
T cd03253 76 AIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN 155 (236)
T ss_pred hEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 3899999999999999999998753 344455667788889888899999999999999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHh
Q 000553 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 752 ~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++.+.|+.+++..
T Consensus 156 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 156 PPILLLDEATSALDTHTEREIQAA-LRD-VSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999988876 333 233789999999999998899999999999999998887754
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=331.21 Aligned_cols=182 Identities=29% Similarity=0.450 Sum_probs=161.4
Q ss_pred cEEEEEEEEEECCC----CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCeeCCCCChHh
Q 000553 1191 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRD 1264 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~----~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~--~~~~G~I~IDG~di~~i~~~~ 1264 (1428)
.|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 256999999999999999999999999999999999999 9999999999999874 36
Q ss_pred HhcceEEEeCCccccCC-cHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1265 LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1265 lR~~i~~VpQdp~lf~g-TIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
.|++++++||++.+|++ |+++|+.... . +. .||+|||||++|||||++
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~-----------~~--------~LS~G~~qrv~laral~~ 128 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------K-----------LR--------GLSGGERKRVSIALELVS 128 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------H-----------hc--------cCCHHHHHHHHHHHHHHc
Confidence 78899999999998875 9999984210 0 00 699999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChh-hhhh-cCEEEEEeCCeEEEec
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIS-TVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~-ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
+|+++||||||++||..+.+.+.+.|++.. +++|+|+|+|+++ .+.. ||+|++|++|++++.|
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999998864 4899999999997 4554 8999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=323.09 Aligned_cols=207 Identities=28% Similarity=0.371 Sum_probs=172.3
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|.++.|..... ...+++||||++.+||..+|+|+||||||||.++|+|..+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~--~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGKF--AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCcc--hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 4788999999976421 22579999999999999999999999999999999999999999999987
Q ss_pred --cEEEEcCCCCC-Cc--ccHHHHHhcCC-----CCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 --SIAYVPQVPWI-LS--GTIRDNILFGK-----NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 --~i~y~~Q~p~l-~~--~ti~~nI~~g~-----~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.|-+|+|+|.- +| -||++-|.-+- +-.+++..++++..+|.... .......|||||+|||
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRi 150 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRI 150 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHH
Confidence 38999999962 33 48888875332 22345577788888886643 2344568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHH
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
||||||..+|+++|||||||+||+.+...|++-+..-...++-|.|+|||++..+.+ ||||++|++|+++|.++.+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 999999999999999999999999999999986433223456699999999999987 9999999999999999998886
Q ss_pred hc
Q 000553 822 VS 823 (1428)
Q Consensus 822 ~~ 823 (1428)
..
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 54
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=321.48 Aligned_cols=203 Identities=25% Similarity=0.378 Sum_probs=170.9
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|++-.|+.. ..+|+||||+|++||+++|+|++||||||||++|.|..+|++|+|.++|
T Consensus 2 ~~i~~~nl~k~yp~~-----~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPGG-----HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCCC-----ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 358899999999743 3459999999999999999999999999999999999999999999876
Q ss_pred -----cEEEEcCCCCCCcc-cHHHHHhcCCC------------CChHHHHHHHH---HhcchHHHhcccCCCcccccCCC
Q 000553 673 -----SIAYVPQVPWILSG-TIRDNILFGKN------------YDPQSYSETLK---ACTLDVDISLMVGGDMAYIGEKG 731 (1428)
Q Consensus 673 -----~i~y~~Q~p~l~~~-ti~~nI~~g~~------------~~~~~~~~v~~---~c~l~~di~~l~~gd~t~ig~~g 731 (1428)
+|||++|++-|.+. ||.+|++.|.- +.++....+++ ..++.+. .-.+.
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~qra 145 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQRA 145 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHHHh
Confidence 59999999998765 99999998742 34444444443 3333322 23456
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCe
Q 000553 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQ 810 (1428)
Q Consensus 732 ~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~ 810 (1428)
.+|||||+|||+|||||+++|+|+|-|||+|+|||.+++++++.+..-....|.|+|+.-|++++.. +||||+-|++|+
T Consensus 146 ~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence 6999999999999999999999999999999999999999999744333556889999999999965 699999999999
Q ss_pred EEEecChHHHHh
Q 000553 811 VKWIGSSADLAV 822 (1428)
Q Consensus 811 i~~~g~~~el~~ 822 (1428)
|++.|+.+|+..
T Consensus 226 ivfDg~~~el~~ 237 (258)
T COG3638 226 IVFDGPASELTD 237 (258)
T ss_pred EEEeCChhhhhH
Confidence 999999988643
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=342.59 Aligned_cols=217 Identities=22% Similarity=0.335 Sum_probs=177.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCeeCCCCChHhHhc-
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL--TPICGGQILVDGLNIINTPVRDLRG- 1267 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl--~~~~~G~I~IDG~di~~i~~~~lR~- 1267 (1428)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 5999999999964 3699999999999999999999999999999999998 6899999999999998887766554
Q ss_pred ceEEEeCCccccCC-cHHHhcCcCCC----C---ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCC-CCChhHHHHHHH
Q 000553 1268 RFAVVPQSPFLFEG-SLRDNLDPFHM----N---DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGI-SFSVGQRQLICL 1337 (1428)
Q Consensus 1268 ~i~~VpQdp~lf~g-TIR~NLdp~~~----~---~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~-~LSgGQrQrl~L 1337 (1428)
.++++||+|.+|++ |+++|+..... . .+.+..+..+ ...+.++.+|+. ...+.... .||||||||++|
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLE--IINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHH--HHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 58999999999987 78999753210 0 0100011111 123334444665 34455444 599999999999
Q ss_pred HHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh--cCEEEEEeCCeEEEecChhHH
Q 000553 1338 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN--MDEILILDHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1338 ARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~--~DrI~Vl~~G~ive~g~p~eL 1411 (1428)
||||+++|+||||||||++||.++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+|+++
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999998764 48999999999999875 799999999999999999844
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=326.92 Aligned_cols=177 Identities=33% Similarity=0.525 Sum_probs=158.5
Q ss_pred EEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEE
Q 000553 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1272 (1428)
Q Consensus 1193 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1272 (1428)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 57899999964 4699999999999999999999999999999999999999999999999999988888888899999
Q ss_pred eCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000553 1273 PQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1352 (1428)
Q Consensus 1273 pQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDE 1352 (1428)
|| +++.+++. ..+...+..||+|||||++||||++++|+++||||
T Consensus 79 ~q--------------------------~l~~~gl~---------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 123 (180)
T cd03214 79 PQ--------------------------ALELLGLA---------HLADRPFNELSGGERQRVLLARALAQEPPILLLDE 123 (180)
T ss_pred HH--------------------------HHHHcCCH---------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99 44444443 33445566899999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1353 CTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1353 aTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
||++||.++.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|++++.|
T Consensus 124 P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999987654 7899999999999855 8999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=330.60 Aligned_cols=181 Identities=24% Similarity=0.382 Sum_probs=160.1
Q ss_pred cEEEEEEEEEECCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCeeCCCCChHhHh
Q 000553 1191 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLR 1266 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~--~~~~G~I~IDG~di~~i~~~~lR 1266 (1428)
.|+++|++++|++. .+++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999742 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred cceEEEeCCccccCC-cHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1267 GRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1267 ~~i~~VpQdp~lf~g-TIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
++++++||+|.+|++ |+++|+.... .++ +||||||||++||||++++|
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~----------------------~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR----------------------GLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh----------------------cCCHHHhHHHHHHHHHhcCC
Confidence 899999999988875 9999986310 000 69999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-h-hhcCEEEEEeC-CeEEEec
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDH-GHLVEQG 1406 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~t-i-~~~DrI~Vl~~-G~ive~g 1406 (1428)
++|+|||||++||.++.+.+.+.|++.. +++|+|+|||+++. + ..||+|++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999998764 47999999999984 4 56899999999 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=333.83 Aligned_cols=197 Identities=27% Similarity=0.376 Sum_probs=163.7
Q ss_pred EEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh----HhHhcce
Q 000553 1194 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV----RDLRGRF 1269 (1428)
Q Consensus 1194 f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~----~~lR~~i 1269 (1428)
++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999964 469999999999999999999999999999999999999999999999999765542 3467889
Q ss_pred EEEeCCccccC-CcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1270 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1270 ~~VpQdp~lf~-gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
++++|+|.+|+ .|+++|+.+... ...++..+ ...+.++.+|++...+....+||+|||||++|||||+++|
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKRE-----KKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999997 599999975211 11111111 1223444446655556666789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhcCEEEEE
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL 1397 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl 1397 (1428)
++|||||||++||+++.+.+.+.|++.. ++.|+|++||+++.+..||+|++|
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999998764 479999999999988889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=341.59 Aligned_cols=210 Identities=24% Similarity=0.383 Sum_probs=177.3
Q ss_pred EEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEE
Q 000553 1193 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1272 (1428)
Q Consensus 1193 ~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1272 (1428)
+++||+++ .+|+|+||+|++||++||+|+||||||||+++|.|++++ +|+|.+||.++...+...+|+.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 56788775 289999999999999999999999999999999999864 99999999999988888888899999
Q ss_pred eCCccc-cCCcHHHhcCcCCCC--ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc------
Q 000553 1273 PQSPFL-FEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK------ 1343 (1428)
Q Consensus 1273 pQdp~l-f~gTIR~NLdp~~~~--~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~------ 1343 (1428)
||+|.+ +..|+++|+..+... +..+. .....+.++.+|++.........||+|||||++|||||++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 999854 567999999764321 11111 1123345555577666666777899999999999999997
Q ss_pred -CCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1344 -SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1344 -~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 679999999999999999999999998764 47899999999998765 899999999999999999998753
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=320.41 Aligned_cols=164 Identities=33% Similarity=0.449 Sum_probs=150.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 46999999999999999999999999999999999999999999999873 68999
Q ss_pred EeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000553 1272 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351 (1428)
Q Consensus 1272 VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLD 1351 (1428)
+||+|.++++|+++|+... ....||+|||||++||||++++|+++|||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD 116 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD 116 (166)
T ss_pred ECCCCccccccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999642 13479999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCEEEEEeCCe
Q 000553 1352 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1401 (1428)
Q Consensus 1352 EaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1401 (1428)
|||++||.++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 117 EPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 117 EATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999876 689999999999888899999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=358.69 Aligned_cols=188 Identities=27% Similarity=0.367 Sum_probs=159.2
Q ss_pred cceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------------cEEEEcCCCCCCcc-
Q 000553 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILSG- 686 (1428)
Q Consensus 625 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------------~i~y~~Q~p~l~~~- 686 (1428)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|++++++.
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 359999999999999999999999999999999999999999999865 49999999999975
Q ss_pred cHHHHHhcCCCC---Ch-HHHH---HHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcC
Q 000553 687 TIRDNILFGKNY---DP-QSYS---ETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759 (1428)
Q Consensus 687 ti~~nI~~g~~~---~~-~~~~---~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDe 759 (1428)
||+|||.|+.++ +. ++++ ++++..+|+.. .+....+|||||||||+|||||+.+|+|+||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999987432 22 2333 44444444332 455666999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHhc
Q 000553 760 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 760 p~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~~ 823 (1428)
|||+||+.+.+.+.+.+.......++|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999988754321234789999999999864 5999999999999999999998754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=357.12 Aligned_cols=227 Identities=27% Similarity=0.453 Sum_probs=183.9
Q ss_pred cEEEEEEEEEECCCCC--ccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC----CceEEECCeeCCCCChHh
Q 000553 1191 LIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC----GGQILVDGLNIINTPVRD 1264 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~--~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~----~G~I~IDG~di~~i~~~~ 1264 (1428)
.++++|++..|..... .+++||||+|.+||.+||||.|||||||+.++|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975433 5999999999999999999999999999999999999987 899999999999888766
Q ss_pred Hh----cceEEEeCCcc-ccCC--cHHHhcC----cCCCCChHHHHHHHHHccHHHHHHhCCCchhhh--cCCCCCChhH
Q 000553 1265 LR----GRFAVVPQSPF-LFEG--SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK--ESGISFSVGQ 1331 (1428)
Q Consensus 1265 lR----~~i~~VpQdp~-lf~g--TIR~NLd----p~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~--e~G~~LSgGQ 1331 (1428)
.| ++|++|||||. .++- ||.+-+. .....+.+| + +....+.++..|+..... .-...|||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~e---a--~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAE---A--RKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHH---H--HHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 54 57999999996 3432 4444432 111111111 0 011122333336654444 3677899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecCh
Q 000553 1332 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1332 rQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p 1408 (1428)
|||+.||+||..+|++||+||||.+||+.|.+.|.+.|++.. .+.++|+|||++..+.. ||||+||.+|++||.|++
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999998875 58999999999999987 899999999999999999
Q ss_pred hHHhccCCcHHHHH
Q 000553 1409 QTLLQDECSVFSSF 1422 (1428)
Q Consensus 1409 ~eLl~~~~s~f~~l 1422 (1428)
+++++++.-.|.+.
T Consensus 240 ~~i~~~p~hpYT~~ 253 (539)
T COG1123 240 EEILSNPQHPYTRG 253 (539)
T ss_pred HHHHhccCCcccHH
Confidence 99999886555543
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=337.88 Aligned_cols=206 Identities=25% Similarity=0.373 Sum_probs=168.6
Q ss_pred cceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC----CCceEEECCeeCCCCChHhHhcceEEEeCCcc-cc-C-
Q 000553 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----CGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LF-E- 1280 (1428)
Q Consensus 1208 vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~----~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~-lf-~- 1280 (1428)
+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..+++++|+||+|. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998754 233468999999995 34 3
Q ss_pred CcHHHhcCcC----CCCChHHHHHHHHHccHHHHHHhCCCc---hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000553 1281 GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353 (1428)
Q Consensus 1281 gTIR~NLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLd---t~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEa 1353 (1428)
-|+.+|+... +... .+. .....+.++.+|++ ........+||+|||||++||||++++|+|||||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLS-KQA-----RALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred cCHHHHHHHHHHHcCccH-HHH-----HHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4888887321 1111 110 01123334444565 456667778999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHH
Q 000553 1354 TANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSS 1421 (1428)
Q Consensus 1354 TS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~ 1421 (1428)
|++||..+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 999999999999999987653 7899999999999975 8999999999999999999998766555554
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=355.78 Aligned_cols=202 Identities=28% Similarity=0.422 Sum_probs=170.0
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------c
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~ 673 (1428)
.++++|+++.|+.+ ..+|+|+||++++|++++|+|||||||||||++|+|+.+|++|+|.++| .
T Consensus 3 ~l~i~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYDGK-----TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred EEEEEeEEEEeCCC-----CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 37899999999421 2359999999999999999999999999999999999999999999886 4
Q ss_pred EEEEcCCCCCCc-ccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 674 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
||||+|++.+|. .||+|||.|+.. .+. ++.+++++..+|+.... ....+|||||||||+||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMG 146 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHH
Confidence 999999999985 599999998743 222 34556677777765443 34458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHhc
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~~ 823 (1428)
|||+.+|+++|||||||+||+.+.+.+.+.+ .... ..+.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999888763 3212 23789999999998765 5999999999999999999998643
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=332.88 Aligned_cols=205 Identities=34% Similarity=0.463 Sum_probs=180.7
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|.++.|.... ..+++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~----~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 2 RIEFRNVSFSYPNQE----IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred eEEEEEEEEEcCCCC----cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHH
Confidence 378899999985321 2359999999999999999999999999999999999999999998876
Q ss_pred -cEEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000553 673 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 750 (1428)
.++|++|+|++++.|++||+.++.. .++++..+.++.+++...++..|.|.+|.+.....+||||||||++||||+..
T Consensus 78 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred hhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 4899999999988899999988643 34556778888899988889999999999998999999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEec
Q 000553 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 751 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g 815 (1428)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKER-LRQ-LLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999988886 433 33348999999999988889999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=340.31 Aligned_cols=215 Identities=18% Similarity=0.289 Sum_probs=171.0
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCeeCCCCChHhHh-cc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLR-GR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~--~~~~G~I~IDG~di~~i~~~~lR-~~ 1268 (1428)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999974 36999999999999999999999999999999999995 69999999999999887766554 57
Q ss_pred eEEEeCCccccCC-cHHHhcCcC-C---CCChHHHHHHHHHcc----HHHHHHhCCCch-hhhcCCC-CCChhHHHHHHH
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPF-H---MNDDLKIWSVLEKCH----VKEEVEAVGLET-FVKESGI-SFSVGQRQLICL 1337 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~-~---~~~d~ei~~aL~~~~----l~~~i~~lgLdt-~v~e~G~-~LSgGQrQrl~L 1337 (1428)
++++||+|.+++. |..+|+... . .....+ .++..+ +.+.++.++++. ....... .||||||||++|
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE---PLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccc---cchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence 9999999987765 544443210 0 000000 111111 223334446632 2222232 699999999999
Q ss_pred HHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhhhh--cCEEEEEeCCeEEEecChhHH
Q 000553 1338 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLN--MDEILILDHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1338 ARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~-~~TvI~IaHrl~ti~~--~DrI~Vl~~G~ive~g~p~eL 1411 (1428)
|||++++|+||||||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.. +|+|++|++|++++.|++++.
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999987643 7899999999999987 799999999999999999854
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=335.10 Aligned_cols=176 Identities=22% Similarity=0.303 Sum_probs=133.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCc-cccCCcHHHhcCcCCC-
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM- 1292 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp-~lf~gTIR~NLdp~~~- 1292 (1428)
+|..||.+|++||||-||||++++|.|.++|++|+ ..++ +++|=||-- .-|+|||++-|.--..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45567899999999999999999999999999998 2222 588889853 2388999987632111
Q ss_pred -CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHH
Q 000553 1293 -NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1371 (1428)
Q Consensus 1293 -~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~ 1371 (1428)
+.+.-.+ .+.+..+.|+..+...-.+|||||.||++||-||.|++++.+||||+|.||.+..-.+-++||+
T Consensus 429 ~~~~s~~~--------~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 429 AFGSSYFK--------TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred hcccchhH--------HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHH
Confidence 1111111 1233444666666666678999999999999999999999999999999999999999999987
Q ss_pred hc--CCcEEEEeccChhhhhh-cCEEEEEeC--CeEEEecChhHHh
Q 000553 1372 EC--KGMTVITIAHRISTVLN-MDEILILDH--GHLVEQGNPQTLL 1412 (1428)
Q Consensus 1372 ~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~--G~ive~g~p~eLl 1412 (1428)
.. .++|.++|-|++-.+.- +||++|.+. |+=-....|..+.
T Consensus 501 ~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr 546 (591)
T COG1245 501 FIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMR 546 (591)
T ss_pred HHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHH
Confidence 54 58899999999998875 699999963 3222233455553
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=350.27 Aligned_cols=210 Identities=27% Similarity=0.426 Sum_probs=171.9
Q ss_pred CCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC---------
Q 000553 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1428)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--------- 672 (1428)
.+..++++|++|.|+...+ ...++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 4457999999999974211 113469999999999999999999999999999999999999999998763
Q ss_pred --------------------cEEEEcCCC--CCCcccHHHHHhcCCC---CChH----HHHHHHHHhcchHHHhcccCCC
Q 000553 673 --------------------SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGD 723 (1428)
Q Consensus 673 --------------------~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~c~l~~di~~l~~gd 723 (1428)
.|+||+|+| ++++.||+|||.|+.. .+++ +..+.++.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------- 167 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD--------- 167 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh---------
Confidence 279999998 7899999999998742 2222 2333444444432
Q ss_pred cccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCE
Q 000553 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADM 802 (1428)
Q Consensus 724 ~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~ 802 (1428)
...++.+.+||||||||++|||||..+|+++||||||++||+.+.+.+++. +.....+++|+|++||+++.+. .||+
T Consensus 168 -~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~-L~~l~~~g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 168 -SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL-ILDAKANNKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred -hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 224667789999999999999999999999999999999999999988876 3331235789999999999875 6999
Q ss_pred EEEEeCCeEEEecChHHHHhc
Q 000553 803 VVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 803 i~~l~~G~i~~~g~~~el~~~ 823 (1428)
|++|++|++++.|+++++...
T Consensus 246 i~vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 246 VIVMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999988643
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=352.60 Aligned_cols=203 Identities=28% Similarity=0.355 Sum_probs=168.4
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
|+++|+++.|+.... ...+|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~--~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTK--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCc--ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 688999999964211 12469999999999999999999999999999999999999999998865
Q ss_pred ---cEEEEcCCCCCCc-ccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
+|+|++|++.++. .||+|||.++.. .+. ++..++++..+|.+.. ......||||||||
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-----------~~~~~~LSgGqkQR 148 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-----------DSYPSNLSGGQKQR 148 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 4899999999885 699999987632 222 2334555555554322 34456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~e 819 (1428)
|+|||||..+|+++|||||||+||+.+.+.+++. +.... ..+.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l-L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILEL-LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999998876 33211 237899999999999865 99999999999999999999
Q ss_pred HHh
Q 000553 820 LAV 822 (1428)
Q Consensus 820 l~~ 822 (1428)
+..
T Consensus 228 v~~ 230 (343)
T TIGR02314 228 IFS 230 (343)
T ss_pred HHc
Confidence 864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=322.51 Aligned_cols=222 Identities=26% Similarity=0.432 Sum_probs=190.1
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH-hcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1269 (1428)
-++.+|++.+|+. -.+++||||++++||.+||+|||||||||++++|.|+|+|++|+|.++|.||..++.+.. |..|
T Consensus 4 lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 3678999999964 359999999999999999999999999999999999999999999999999999998774 4568
Q ss_pred EEEeCCccccCC-cHHHhcCcCCCC------------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHMN------------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1336 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~~------------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1336 (1428)
+--.|.+-+|++ ||-||+.-.... ...+-.++.++ ..+.++.+||+...++...+||+||++||-
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~--A~~~Le~vgL~~~a~~~A~~LsyG~qR~LE 159 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--ARELLEFVGLGELADRPAGNLSYGQQRRLE 159 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH--HHHHHHHcCCchhhcchhhcCChhHhHHHH
Confidence 888999999987 999998543110 00011122222 234455568988888888899999999999
Q ss_pred HHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1337 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1337 LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
|||||..+|++|+||||.++|.++-...+.+.|++..+ +.|+++|-||++.+++ ||||+||+.|+++.+|+|+|..+
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999999988889999988764 5899999999999998 89999999999999999999998
Q ss_pred cCC
Q 000553 1414 DEC 1416 (1428)
Q Consensus 1414 ~~~ 1416 (1428)
|+.
T Consensus 240 dp~ 242 (250)
T COG0411 240 NPR 242 (250)
T ss_pred CHH
Confidence 763
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=337.85 Aligned_cols=194 Identities=27% Similarity=0.364 Sum_probs=163.4
Q ss_pred ceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccccC-CcHHHhc
Q 000553 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNL 1287 (1428)
Q Consensus 1209 L~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~-gTIR~NL 1287 (1428)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|+ .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CcC-----CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHH
Q 000553 1288 DPF-----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362 (1428)
Q Consensus 1288 dp~-----~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te 1362 (1428)
... ...++++..+ .+.+.++.+|++.........||||||||++|||||+++|++|||||||++||+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 642 1122222111 123344455666656666778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1363 SILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1363 ~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999998764 37899999999999876 8999999999999999887763
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=337.66 Aligned_cols=195 Identities=29% Similarity=0.381 Sum_probs=160.8
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEe-CCccccC-CcH
Q 000553 1206 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP-QSPFLFE-GSL 1283 (1428)
Q Consensus 1206 ~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~Vp-Qdp~lf~-gTI 1283 (1428)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|+| |++.+|. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346788999997 6677764 599
Q ss_pred HHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHH
Q 000553 1284 RDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360 (1428)
Q Consensus 1284 R~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~ 1360 (1428)
++|+.... ..++++..+. ..+.++.+|++.........||+|||||++|||||+.+|++|||||||++||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKR-----LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 99985421 1222222221 122333446655455555679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1361 TASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1361 te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999998764 37899999999999876 8999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=388.68 Aligned_cols=211 Identities=24% Similarity=0.288 Sum_probs=154.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHH---------HHhcCCCCCC----c----eEEEC
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN---------ALFRLTPICG----G----QILVD 1253 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~---------~L~rl~~~~~----G----~I~ID 1253 (1428)
.++++|++. ..|+|+|++|++||.+||.|+||||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 588888762 2799999999999999999999999999999 4455432211 1 24666
Q ss_pred CeeCCCCCh----H------hHhc---------c-----eEEEeCC------------------c---------------
Q 000553 1254 GLNIINTPV----R------DLRG---------R-----FAVVPQS------------------P--------------- 1276 (1428)
Q Consensus 1254 G~di~~i~~----~------~lR~---------~-----i~~VpQd------------------p--------------- 1276 (1428)
..++..-+. . ++|+ + ..+..|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 666543222 1 4441 1 1112221 1
Q ss_pred -----cccCC-cHHHhcCcCCC-----C-ChHHHHHHHHHccHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHHHHc-
Q 000553 1277 -----FLFEG-SLRDNLDPFHM-----N-DDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLARALL- 1342 (1428)
Q Consensus 1277 -----~lf~g-TIR~NLdp~~~-----~-~d~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQrl~LARALL- 1342 (1428)
+.+.+ ||.|||++... . +.+++.+.+ +.++.+||+.. .+....+||||||||++|||||+
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLA 826 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhh
Confidence 13334 78888765421 0 112222222 23444588765 78888899999999999999998
Q ss_pred --cCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhcCEEEEEe------CCeEEEecChhHHhc
Q 000553 1343 --KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILD------HGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1343 --~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~------~G~ive~g~p~eLl~ 1413 (1428)
++|+++||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|+++..
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 5999999999999999999999999998764 5889999999999998799999996 799999999999986
Q ss_pred c
Q 000553 1414 D 1414 (1428)
Q Consensus 1414 ~ 1414 (1428)
.
T Consensus 907 ~ 907 (1809)
T PRK00635 907 L 907 (1809)
T ss_pred c
Confidence 3
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=300.27 Aligned_cols=197 Identities=25% Similarity=0.408 Sum_probs=171.3
Q ss_pred EECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCcccc
Q 000553 1200 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1279 (1428)
Q Consensus 1200 ~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf 1279 (1428)
+|.....++|+|+||++++||.++|.||||||||||++.+.-+..|++|.++..|.|+++.+++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 46666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHhcC-cC---CCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccc
Q 000553 1280 EGSLRDNLD-PF---HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354 (1428)
Q Consensus 1280 ~gTIR~NLd-p~---~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaT 1354 (1428)
.+||.+||- |+ +...|... ..++++..+++ +.+..+..+||||||||++|+|-|---|+||+|||+|
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~a--------a~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAA--------ALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred ccchhhccccchHHhccCCChHH--------HHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 999999985 33 22233221 12233334443 4556667789999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhh-hhhcCEEEEEeCCeEEE
Q 000553 1355 ANVDAQTASILQNAISSEC--KGMTVITIAHRIST-VLNMDEILILDHGHLVE 1404 (1428)
Q Consensus 1355 S~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~t-i~~~DrI~Vl~~G~ive 1404 (1428)
|+||..+.+.|.+.|.+++ ++..++.|||+-+. ++.+||++-+..|++-|
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999999998887 48899999999998 78899999999998754
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=331.15 Aligned_cols=452 Identities=16% Similarity=0.170 Sum_probs=314.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCh--hH---HHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000553 338 QYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD--GE---IQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY 411 (1428)
Q Consensus 338 ~~~~~~~~~~~~ir~~L~~~Iy~K~L~l~~~~~~~~~~--g~---i~nlms~D~~~i~~~~~-~~~~~w~~p~~i~i~~~ 411 (1428)
...|...++..+.|..|+..+.+|-|.-....+-.... +. .-..+..|+..+.+... ....+..+.+.++.-..
T Consensus 105 ~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~ 184 (604)
T COG4178 105 AQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTG 184 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35566778999999999999999999877543321111 11 22477788877766433 33444455555555555
Q ss_pred HHHHHhHHHH---------HHH--HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcH
Q 000553 412 LLYTQVKFAF---------VSG--LAITILLIPVNKWIANLIAN----ATEKMMKQKDERIRRTGEILTHIRTLKMYGWE 476 (1428)
Q Consensus 412 lL~~~lg~a~---------l~g--~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e 476 (1428)
+||...|.-+ +.| +.++++.++...+++-++++ ...+..+.-..--.....+..+...|-+|+-|
T Consensus 185 iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 185 ILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCc
Confidence 6664444211 111 11223334444444444443 32222222222234455788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCCCCcHhHHHHHHHHHHHHHHHHHHHHH
Q 000553 477 QIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTF--GLFALMGHQLDAAMVFTCLALFNSLISPLNSFPW 554 (1428)
Q Consensus 477 ~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~y~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~ 554 (1428)
+...+++++.-..=++..++..........+......+..++-+ ++=.+..+.++-+.+.++-..|+.+...++-+..
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~ 344 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFID 344 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887776654433333332222211111111111111111111 1112457789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC---CchhhhhhcCCCCcccCCCcc-CCCCCceEEEEccEEeecCCCccccccceeee
Q 000553 555 VINGLIDAFISIRRLTRFLGCSE---YKHELEQAANSPSYISNGLSN-FNSKDMAVIMQDATCSWYCNNEEEQNVVLNQV 630 (1428)
Q Consensus 555 ~i~~~~~a~~s~~RI~~fL~~~e---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i 630 (1428)
.++.+.+=+++..|+.+|-..-+ .++.. +... ..... .+..+..|.++|++..-+.. ...+++.
T Consensus 345 ~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~------~~~~-~~~~~~~~~~~~~i~~~nl~l~~p~~-----~~ll~~l 412 (604)
T COG4178 345 NYDAIADWRATLLRLAEFRQALEAAQMDTEK------PART-GRRIDFDDNADHGITLENLSLRTPDG-----QTLLSEL 412 (604)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhccCcccc------cCcc-cccccccccccceeEEeeeeEECCCC-----Ceeeccc
Confidence 99999999999999999985322 11100 0000 00000 01115789999999986643 2459999
Q ss_pred eeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEc-C-cEEEEcCCCCCCcccHHHHHhcCCC---CChHHHHH
Q 000553 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS-G-SIAYVPQVPWILSGTIRDNILFGKN---YDPQSYSE 705 (1428)
Q Consensus 631 ~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~-~-~i~y~~Q~p~l~~~ti~~nI~~g~~---~~~~~~~~ 705 (1428)
|+++++|+-+.|.|+||||||||+++|.|..|--+|.|... + .+-|+||.|.++.||.||-|++... ++++.+.+
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHH
Confidence 99999999999999999999999999999999999999887 3 4899999999999999999999742 78899999
Q ss_pred HHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCc
Q 000553 706 TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785 (1428)
Q Consensus 706 v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~ 785 (1428)
++..|+|.+-++.+.+-+. =...||||||||+|+||.++++|++++|||.|||||++++..+++. +.. .+.+.
T Consensus 493 vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~-l~~-~lp~~ 565 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL-LKE-ELPDA 565 (604)
T ss_pred HHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH-HHh-hCCCC
Confidence 9999999988877654332 3457999999999999999999999999999999999999999887 444 56789
Q ss_pred eEEEEccCcchhhcCCEEEEEeC
Q 000553 786 TRILCTHNVQAISAADMVVVMDK 808 (1428)
Q Consensus 786 t~ilvth~~~~l~~ad~i~~l~~ 808 (1428)
|+|-|.|+.......++.+.+.+
T Consensus 566 tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 566 TVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred EEEEeccchhhHHHHhhheeecc
Confidence 99999999998888777666643
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=310.33 Aligned_cols=506 Identities=16% Similarity=0.137 Sum_probs=332.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000553 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGY-VLAIALGLTSI-LKSFFDTQYSFHLSKL 346 (1428)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~-~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 346 (1428)
+.-.++|.++|+++....+.++..+... .++-.+-+++-+......++ .+.+++.+..+ .+.+.. ....-+
T Consensus 3 ~ll~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~----lg~t~~ 75 (546)
T COG4615 3 LLLLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQ----LGLTTL 75 (546)
T ss_pred hHHHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 3457888999998887766665544333 22222223332211111111 12222222222 222222 222233
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000553 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLA 426 (1428)
Q Consensus 347 ~~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~w~~p~~i~i~~~lL~~~lg~a~l~g~~ 426 (1428)
|..+-..+...+-+|.+.-+.....+..++.++.-++.|+..|...+..+.++-.+.+-+..++..|++.-+..++..++
T Consensus 76 gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV 155 (546)
T COG4615 76 GQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVV 155 (546)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444555667778888777777778899999999999999877777776655555555555666666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000553 427 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWE--QIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1428)
Q Consensus 427 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e--~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1428)
.+++.+..+++...+..+...+..+.-|+-.+..+.++.|-|.+|...=- ..+.+.+.. -.+|.+. +..+...+.
T Consensus 156 ~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~-~a~~~r~--~~~~~n~f~ 232 (546)
T COG4615 156 WIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIP-DAQEYRH--HIIRANTFH 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCc-chHHHHh--hhhhhhHHH
Confidence 77777788888888888888888899999999999999999999987622 111111110 0111111 111112221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh-
Q 000553 505 -VFFWATTPTLFSLFTFGLFALMGHQL-DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE- 581 (1428)
Q Consensus 505 -~~~~~~~~~~~~~~~f~~y~~~~~~L-t~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~- 581 (1428)
.........+..++....|+...-.. +...+.|....+-.++.|+.++...+|.+..|.++++||.++=..|+..+-
T Consensus 233 ~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~ 312 (546)
T COG4615 233 LLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFP 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCC
Confidence 11112222333444444444322212 222444544556678899999999999999999999999998654433221
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCc
Q 000553 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~ 661 (1428)
..+ + .++-..++++|+.|+|.+. .+-+.-||++|++||++.|+|.||||||||++.+.|.+
T Consensus 313 ~~q----~----------~p~~~~lelrnvrfay~~~-----~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~ 373 (546)
T COG4615 313 RPQ----A----------FPDWKTLELRNVRFAYQDN-----AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY 373 (546)
T ss_pred CCC----c----------CCcccceeeeeeeeccCcc-----cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc
Confidence 111 0 1123568999999999754 24488999999999999999999999999999999999
Q ss_pred cCCCeEEEEcCc-------------EEEEcCCCCCCcccHHHHHhcCCC-CChHHHHHHHHHhcchHHHhcccCCCcccc
Q 000553 662 MLTHGSIHASGS-------------IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYI 727 (1428)
Q Consensus 662 ~~~~G~i~~~~~-------------i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~c~l~~di~~l~~gd~t~i 727 (1428)
.|++|+|.++|. ++-++-|-|+|+.+ +.++. -.++..++-++.-.+.... ++.+|.-+
T Consensus 374 ~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l-----l~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs-- 445 (546)
T COG4615 374 QPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL-----LGPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS-- 445 (546)
T ss_pred CCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh-----hCCccCCChHHHHHHHHHHHHhhhh-cccCCccc--
Confidence 999999999984 23333444544332 22222 3455555555555554432 23333322
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEe
Q 000553 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMD 807 (1428)
Q Consensus 728 g~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~ 807 (1428)
...||-|||.|+|+--|+.-+.|||+|||=-+-=||+-+++.++..+-.....|||++.||||-.+...|||++.|+
T Consensus 446 ---~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~ 522 (546)
T COG4615 446 ---NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMR 522 (546)
T ss_pred ---ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHh
Confidence 24799999999999999999999999999999999999888877644222456999999999999999999999999
Q ss_pred CCeEEEe
Q 000553 808 KGQVKWI 814 (1428)
Q Consensus 808 ~G~i~~~ 814 (1428)
+|++++.
T Consensus 523 ~G~~~e~ 529 (546)
T COG4615 523 NGQLSEL 529 (546)
T ss_pred cCceeec
Confidence 9999864
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=330.62 Aligned_cols=199 Identities=39% Similarity=0.692 Sum_probs=175.8
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--------------
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-------------- 672 (1428)
.+.|+.|.|+.+ ..+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGSG-----LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCCC-----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 467888998743 2359999999999999999999999999999999999999999998853
Q ss_pred ---cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000553 673 ---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly 749 (1428)
.++|++|+|.+++.|++||+.++.+++.++.+++++++++...++.+|.|++|..+....+||||||||++||||++
T Consensus 77 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred hcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 38999999999989999999987766667778899999999888889999999999999999999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHH-hhcCcccCCceEEEEccCcchhhcCCEEEEEeCCe
Q 000553 750 HGSDIYMLDDVLSAVDAQVARWILSN-AIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1428)
Q Consensus 750 ~~~~illLDep~s~LD~~~~~~i~~~-~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 810 (1428)
.+|+++||||||++||+.+.+.+.+. ++.....+++|+|++||+.+.+..||++++|++|+
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887762 23221234689999999999998999999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=350.38 Aligned_cols=201 Identities=28% Similarity=0.413 Sum_probs=168.4
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|.. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 78 (351)
T PRK11432 5 NFVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78 (351)
T ss_pred cEEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHC
Confidence 36889999999963 2359999999999999999999999999999999999999999999876
Q ss_pred cEEEEcCCCCCCcc-cHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHH
Q 000553 673 SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1428)
Q Consensus 673 ~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRval 744 (1428)
+|+||+|++.+|.. ||+|||.|+.. .++ ++.+++++..++... ......+|||||||||+|
T Consensus 79 ~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaL 147 (351)
T PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVAL 147 (351)
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 59999999999865 99999999743 222 234445555555432 234456899999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHh
Q 000553 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 745 ARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
||||+.+|+++|||||||+||+.+.+.+.+. +.... ..++|+|+|||+.+.+. .||+|++|++|+|.+.|+++++..
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREK-IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999988776 33312 23789999999999865 599999999999999999998864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=368.20 Aligned_cols=215 Identities=24% Similarity=0.393 Sum_probs=183.8
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHh-cce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR-GRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR-~~i 1269 (1428)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+....+ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 4699999999999999999999999999999999999999999999999999887766654 569
Q ss_pred EEEeCCccccCC-cHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~IL 1348 (1428)
+|+||++.+|++ |+++|+.......+ +..+ .+.+.++.+|++.........||||||||++|||||+++|+||
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll 162 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQ-ASMQ-----KMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccch-HHHH-----HHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999998876 99999975432111 1111 1233444556665555666689999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1349 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1349 lLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999998763 47899999999999876 89999999999999999998865
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=370.96 Aligned_cols=216 Identities=25% Similarity=0.397 Sum_probs=183.1
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCeeCCCCChHh-Hhc
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRD-LRG 1267 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~--~~G~I~IDG~di~~i~~~~-lR~ 1267 (1428)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5899999999963 4699999999999999999999999999999999999996 8999999999998777654 467
Q ss_pred ceEEEeCCccccCC-cHHHhcCcCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1268 RFAVVPQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1268 ~i~~VpQdp~lf~g-TIR~NLdp~~~------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
+++||||+|.+|+. |+++|+.+... .+.++..+ .+.+.++.+|++........+||||||||++||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 89999999988875 99999975421 11111111 13344555577655556667899999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
|+.+|+||||||||++||+++...+.+.|++.. ++.|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 999999999999999999999999999998763 47899999999999876 89999999999999999988743
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=323.01 Aligned_cols=218 Identities=27% Similarity=0.375 Sum_probs=185.5
Q ss_pred cEEEEEEEEEECCCC----------------------CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCc
Q 000553 1191 LIEFQNVTMRYKPSL----------------------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~----------------------~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G 1248 (1428)
.|+++||+.-++.+. ..-++|+||+|+.||..-|.|-||||||||++++-|++||++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588899988886431 1237899999999999999999999999999999999999999
Q ss_pred eEEECCeeCCCCChHhHh----cceEEEeCCccccCC-cHHHhcCcCCCC---ChH----HHHHHHHHccHHHHHHhCCC
Q 000553 1249 QILVDGLNIINTPVRDLR----GRFAVVPQSPFLFEG-SLRDNLDPFHMN---DDL----KIWSVLEKCHVKEEVEAVGL 1316 (1428)
Q Consensus 1249 ~I~IDG~di~~i~~~~lR----~~i~~VpQdp~lf~g-TIR~NLdp~~~~---~d~----ei~~aL~~~~l~~~i~~lgL 1316 (1428)
+|++||.||..++..+|| +++++|.|.--||+- ||-+|..++-+. +.+ ...++|+.+||
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL--------- 154 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGL--------- 154 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCc---------
Confidence 999999999999987775 679999999999986 999999876432 222 23344555544
Q ss_pred chhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCE
Q 000553 1317 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDE 1393 (1428)
Q Consensus 1317 dt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~Dr 1393 (1428)
+..-......||||+|||+.|||||..+|+||+||||.|+|||--...+|+-+.+.- -++|+++|||+|+.... -||
T Consensus 155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234 (386)
T ss_pred hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce
Confidence 444445566899999999999999999999999999999999999999998876543 38999999999998766 699
Q ss_pred EEEEeCCeEEEecChhHHhccCCc
Q 000553 1394 ILILDHGHLVEQGNPQTLLQDECS 1417 (1428)
Q Consensus 1394 I~Vl~~G~ive~g~p~eLl~~~~s 1417 (1428)
|..|++|+|+..|+|+|++.+|.-
T Consensus 235 IaimkdG~ivQ~Gtp~eIl~~PAn 258 (386)
T COG4175 235 IAIMKDGEIVQVGTPEEILLNPAN 258 (386)
T ss_pred EEEecCCeEEEeCCHHHHHcCccH
Confidence 999999999999999999998753
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=372.49 Aligned_cols=214 Identities=25% Similarity=0.337 Sum_probs=149.4
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHh------cCCC----C-----------CCce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF------RLTP----I-----------CGGQ 1249 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~------rl~~----~-----------~~G~ 1249 (1428)
.++++|++. ..|+|+||+|++||.+||+|+||||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 588999862 2699999999999999999999999999998333 1111 1 1123
Q ss_pred EEECCeeCCCCCh----------HhHhcceEEEeCC------ccccCC--------------cHHHhcCcC---------
Q 000553 1250 ILVDGLNIINTPV----------RDLRGRFAVVPQS------PFLFEG--------------SLRDNLDPF--------- 1290 (1428)
Q Consensus 1250 I~IDG~di~~i~~----------~~lR~~i~~VpQd------p~lf~g--------------TIR~NLdp~--------- 1290 (1428)
|.||..+|..-++ +.+|.-++=.|+- +-.|+- .+.-++.+.
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 6777666654332 3456555554442 223321 111111100
Q ss_pred ---CCCChH-----------------HHHHHHHHc----c---HHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1291 ---HMNDDL-----------------KIWSVLEKC----H---VKEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1291 ---~~~~d~-----------------ei~~aL~~~----~---l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
..+.++ .+.++++-. . ..+.++.+||+. .++.....|||||+||++|||+|+
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 001111 111121111 1 112333448875 478888899999999999999999
Q ss_pred c---CCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhcCEEEEE------eCCeEEEecChhHH
Q 000553 1343 K---SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1343 ~---~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl------~~G~ive~g~p~eL 1411 (1428)
+ +|+++||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 489999999999999999999999998764 588999999999999999999999 79999999999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=326.71 Aligned_cols=194 Identities=25% Similarity=0.336 Sum_probs=164.8
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 46999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EeCCccccC-CcHHHhcCcCCC----CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~~----~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
+||++.+++ .|++||+..... ..++++.++++..+ ++.........||+|||||++||||++++|+
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~g---------l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVG---------LAGFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcC---------CHHHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998886 599999964321 12334444555444 4433444556899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhc-CEEEEE
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILIL 1397 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~-DrI~Vl 1397 (1428)
||+|||||++||+++.+.+.+.|++.. +++|+|+|||+++.+..| +|++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999998763 478999999999999776 788776
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=369.94 Aligned_cols=216 Identities=19% Similarity=0.303 Sum_probs=182.9
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH-hcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1269 (1428)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 5899999999964 369999999999999999999999999999999999999999999999999988776543 4679
Q ss_pred EEEeCCccccCC-cHHHhcCcCCC----C------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHM----N------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~----~------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1338 (1428)
+||||++.+|++ |+++|+..... . +.++..+ .+.+.++.+|++........+||||||||++||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 999999988876 99999964311 0 1111111 123445555776555556668999999999999
Q ss_pred HHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1339 RALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
|||+++|+||||||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.+ ||||++|++|++++.|+++++..
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999998763 47899999999999986 89999999999999999988754
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=311.63 Aligned_cols=159 Identities=33% Similarity=0.518 Sum_probs=148.1
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh-HhHhcceE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFA 1270 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i~ 1270 (1428)
|+++|++++|+. .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. +..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988775 45678899
Q ss_pred EEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000553 1271 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1350 (1428)
Q Consensus 1271 ~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlL 1350 (1428)
++|| ||+|||||++||||++++|++|+|
T Consensus 79 ~~~q----------------------------------------------------LS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 79 MVYQ----------------------------------------------------LSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred EEEe----------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999 999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEE
Q 000553 1351 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVE 1404 (1428)
Q Consensus 1351 DEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive 1404 (1428)
||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. |||+++|++|++++
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999998764 47899999999998876 89999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=368.63 Aligned_cols=216 Identities=19% Similarity=0.312 Sum_probs=181.6
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHh-Hhcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1269 (1428)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999997665444 46789
Q ss_pred EEEeCCccccCC-cHHHhcCcCCC-------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~-------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
+|+||+|.+|+. |+++|+.+... .+..+..+ ...+.++.+|++........+||||||||++|||||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 999999988876 99999975321 11111111 123445555776555555668999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
+.+|++|||||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999998753 47899999999999876 79999999999999999887643
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=333.65 Aligned_cols=198 Identities=28% Similarity=0.367 Sum_probs=163.7
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--------------
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-------------- 672 (1428)
+++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (235)
T cd03261 2 ELRGLTKSFGG---R---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75 (235)
T ss_pred eEEEEEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHH
Confidence 57889998852 2 359999999999999999999999999999999999999999998764
Q ss_pred --cEEEEcCCCCCCcc-cHHHHHhcCCC----CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 --SIAYVPQVPWILSG-TIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~----~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
.|+|++|++.+++. ||+||+.++.. .++ ++..++++.+++.... .....+||||||||
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 144 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKR 144 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHH
Confidence 38999999998876 99999987632 222 2344455555554322 33446899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~e 819 (1428)
|+||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999988876 332122 37899999999998765 99999999999999999888
Q ss_pred HHh
Q 000553 820 LAV 822 (1428)
Q Consensus 820 l~~ 822 (1428)
+..
T Consensus 224 ~~~ 226 (235)
T cd03261 224 LRA 226 (235)
T ss_pred HcC
Confidence 753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=349.92 Aligned_cols=203 Identities=26% Similarity=0.380 Sum_probs=170.5
Q ss_pred CceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----------
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---------- 672 (1428)
...++++|+++.|.. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|
T Consensus 12 ~~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 12 SPLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN 85 (375)
T ss_pred CceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 345899999999963 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCCCCcc-cHHHHHhcCCCC---Ch----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHH
Q 000553 673 -SIAYVPQVPWILSG-TIRDNILFGKNY---DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~~---~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 743 (1428)
.++||+|++.+|.. ||+|||.|+... ++ ++.+++++..++....+. +..+|||||||||+
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~p~~LSgGq~QRVa 154 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-----------KPHQLSGGQQQRVA 154 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 49999999998865 999999987432 22 244556666666654443 34589999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHH
Q 000553 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 744 lARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
|||||+.+|+++|||||||+||+...+.+.+. +.... ..+.|+|+|||+.+.+. .||+|++|++|+|.+.|+++++.
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNE-LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999988776 33212 23789999999999865 59999999999999999999886
Q ss_pred hc
Q 000553 822 VS 823 (1428)
Q Consensus 822 ~~ 823 (1428)
..
T Consensus 234 ~~ 235 (375)
T PRK09452 234 EE 235 (375)
T ss_pred hC
Confidence 43
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=341.54 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=170.4
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|++|+|+.... ....+|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 678999999974321 112469999999999999999999999999999999999999999998875
Q ss_pred ----cEEEEcCCC--CCCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHH
Q 000553 673 ----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1428)
Q Consensus 673 ----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQk 739 (1428)
.++||+|+| .+++.||.|||.|+.. .++ +++.++++..+|..++ ......+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHH
Confidence 389999998 7888999999998742 222 3456666666664332 2345679999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChH
Q 000553 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 740 qRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 818 (1428)
||++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+. .||+|++|++|+++++|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL-FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999988875 3321234789999999999885 59999999999999999999
Q ss_pred HHHh
Q 000553 819 DLAV 822 (1428)
Q Consensus 819 el~~ 822 (1428)
++..
T Consensus 230 ~~~~ 233 (288)
T PRK13643 230 DVFQ 233 (288)
T ss_pred HHHc
Confidence 8754
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=322.20 Aligned_cols=194 Identities=23% Similarity=0.357 Sum_probs=164.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999986543 567889999
Q ss_pred EeCCcccc-CCcHHHhcCcCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000553 1272 VPQSPFLF-EGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1349 (1428)
Q Consensus 1272 VpQdp~lf-~gTIR~NLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILl 1349 (1428)
+||++.++ ..|+++|+..... ..++++.++++..++.+ .......+||+|||||++||||++++|++||
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNG---------FEDRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChh---------hhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999876 4699999965432 34455556666655543 2233455799999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEE
Q 000553 1350 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILIL 1397 (1428)
Q Consensus 1350 LDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl 1397 (1428)
|||||++||+.+.+.+.+.|++.. +++|+|+|||+...+.+ ||+++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999998754 48999999998776665 6999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=341.31 Aligned_cols=205 Identities=27% Similarity=0.416 Sum_probs=170.3
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|++++|+.... ...++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 789999999964321 113469999999999999999999999999999999999999999998865
Q ss_pred ----cEEEEcCCC--CCCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHH
Q 000553 673 ----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1428)
Q Consensus 673 ----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQk 739 (1428)
.|+||+|+| .+++.||+|||.|+.. .++ ++.+++++.++|..++. .....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHH
Confidence 389999998 5888899999998632 222 34566777777754332 334568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeEEEecCh
Q 000553 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817 (1428)
Q Consensus 740 qRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~ 817 (1428)
|||+|||||+.+|+++||||||++||+.+.+.+++. +..... .+.|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999988876 332112 3789999999999876 5999999999999999999
Q ss_pred HHHHh
Q 000553 818 ADLAV 822 (1428)
Q Consensus 818 ~el~~ 822 (1428)
+++..
T Consensus 231 ~~~~~ 235 (290)
T PRK13634 231 REIFA 235 (290)
T ss_pred HHHhc
Confidence 88754
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=348.36 Aligned_cols=202 Identities=29% Similarity=0.395 Sum_probs=169.4
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------c
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~ 673 (1428)
.++++|+++.|+. ..+|+|+||++++||+++|+|||||||||||++|+|..+|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ 77 (353)
T TIGR03265 4 YLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 4889999999863 2259999999999999999999999999999999999999999999976 4
Q ss_pred EEEEcCCCCCCc-ccHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 674 IAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 i~y~~Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
|+||+|++-+|. .||+|||.|+.. .+ .++.+++++..+|+... ..+..+|||||||||+||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALA 146 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHH
Confidence 999999999986 599999998742 22 23455566666554322 345669999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHhc
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~~ 823 (1428)
|||+.+|+++|||||||+||+.+.+++.+.+..-....+.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999998887632211123789999999999865 5999999999999999999998653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=339.54 Aligned_cols=204 Identities=29% Similarity=0.401 Sum_probs=170.5
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|++++|+.... ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 4 IIEVKNLTFKYKEDQE---KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred eEEEEeEEEEcCCCCc---CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 4789999999964211 2359999999999999999999999999999999999999999998876
Q ss_pred -cEEEEcCCCC--CCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 -~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.++|++|+|. ++..||+|||.|+.. .++ ++..++++..+|+...+ ....+||||||||+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv 149 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRV 149 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHH
Confidence 4899999984 566799999998732 232 34566777777764433 33458999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHH
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
+||||++.+|+++||||||++||+.+.+.+++. +..... .|+|+|++||+++.+..||+|++|++|+++..|+.+++.
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKT-IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999988775 333122 378999999999998889999999999999999988875
Q ss_pred hc
Q 000553 822 VS 823 (1428)
Q Consensus 822 ~~ 823 (1428)
..
T Consensus 229 ~~ 230 (279)
T PRK13650 229 SR 230 (279)
T ss_pred cC
Confidence 43
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=340.14 Aligned_cols=207 Identities=28% Similarity=0.441 Sum_probs=170.0
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+.... ..+.+|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4789999999964221 112469999999999999999999999999999999999999999998765
Q ss_pred ---cEEEEcCCC--CCCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHH
Q 000553 673 ---SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1428)
Q Consensus 673 ---~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkq 740 (1428)
.||||+|+| .+++.|++|||.|+.. .++ ++.+++++.++|.. .+........|||||||
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~q 151 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKR 151 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHH
Confidence 489999998 5778899999998642 232 23455666666641 11234566799999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChH
Q 000553 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 741 RvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 818 (1428)
|++|||||+.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK-IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999988876 433122 3789999999999875 59999999999999999999
Q ss_pred HHHh
Q 000553 819 DLAV 822 (1428)
Q Consensus 819 el~~ 822 (1428)
++..
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=373.32 Aligned_cols=222 Identities=24% Similarity=0.348 Sum_probs=180.8
Q ss_pred ccEEEEEEEEEECCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC---------
Q 000553 1190 GLIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--------- 1258 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~--------- 1258 (1428)
..|+++|++++|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 369999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred -CCChH---hHh-cceEEEeCCc--cccCC-cHHHhcCcCC----CCChHHHHHHHHHccHHHHHHhCCCc---hhhhcC
Q 000553 1259 -NTPVR---DLR-GRFAVVPQSP--FLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKES 1323 (1428)
Q Consensus 1259 -~i~~~---~lR-~~i~~VpQdp--~lf~g-TIR~NLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLd---t~v~e~ 1323 (1428)
+.+.. .+| ++|++|+|+| .+++. ||++|+.... ..+..+.. + .+.+.++.+|+. ......
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~---~--~~~~~l~~~gL~~~~~~~~~~ 165 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM---V--EAKRMLDQVRIPEAQTILSRY 165 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH---H--HHHHHHHHCCCCChhhHHhCC
Confidence 22222 334 5799999999 57764 9999986421 11222211 1 123344445663 345666
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-C-CcEEEEeccChhhhhh-cCEEEEEeCC
Q 000553 1324 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-K-GMTVITIAHRISTVLN-MDEILILDHG 1400 (1428)
Q Consensus 1324 G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G 1400 (1428)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|||+|||+++.+.. ||||++|++|
T Consensus 166 ~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G 245 (623)
T PRK10261 166 PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245 (623)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCC
Confidence 77899999999999999999999999999999999999999999998864 3 7899999999999876 8999999999
Q ss_pred eEEEecChhHHhccCC
Q 000553 1401 HLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1401 ~ive~g~p~eLl~~~~ 1416 (1428)
++++.|++++++.++.
T Consensus 246 ~i~~~g~~~~~~~~~~ 261 (623)
T PRK10261 246 EAVETGSVEQIFHAPQ 261 (623)
T ss_pred eecccCCHHHhhcCCC
Confidence 9999999999986543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=301.03 Aligned_cols=193 Identities=25% Similarity=0.379 Sum_probs=168.0
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
|+|+|++-.|+.. ..+|+|+||+|++||++.++||||||||||+|+|.++..|+.|+|.++|
T Consensus 2 I~f~~V~k~Y~~g-----~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~ 76 (223)
T COG2884 2 IRFENVSKAYPGG-----REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF 76 (223)
T ss_pred eeehhhhhhcCCC-----chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch
Confidence 6889999998754 2359999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEcCCCCCC-cccHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 ---SIAYVPQVPWIL-SGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~-~~ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
+||+|+|+--|. +-||.||+.|... .. +++..++++..+|.+....+|. .||||||||
T Consensus 77 LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQR 145 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQR 145 (223)
T ss_pred hhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHH
Confidence 599999999865 5599999998643 22 3456678888899988888886 899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
|+||||+..+|++||-||||-+|||..+..|++- +..-...|.||+++||+.+.+.. --+++.+++|+++...
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~l-feeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRL-FEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHH-HHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999999875 33324568899999999999987 5689999999998643
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=339.62 Aligned_cols=206 Identities=23% Similarity=0.389 Sum_probs=168.4
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+...+ ....+|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4789999999964221 113469999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCC--CCCcccHHHHHhcCCC---CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHH
Q 000553 673 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1428)
Q Consensus 673 -----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQ 738 (1428)
.||||+|+| .+++.|++|||.|+.. ++.+ +..+.++.++|+.+. ....+.+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq 150 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQ 150 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHH
Confidence 379999998 6788899999998632 2332 233445555553221 234567999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecC
Q 000553 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 739 kqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~ 816 (1428)
|||++||||++.+|+++||||||++||+.+.+.+.+. +.... ..++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL-LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999988876 33211 24789999999999875 599999999999999999
Q ss_pred hHHHHh
Q 000553 817 SADLAV 822 (1428)
Q Consensus 817 ~~el~~ 822 (1428)
++++..
T Consensus 230 ~~~~~~ 235 (286)
T PRK13646 230 PKELFK 235 (286)
T ss_pred HHHHHh
Confidence 988754
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=345.75 Aligned_cols=201 Identities=32% Similarity=0.442 Sum_probs=167.5
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------c
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~ 673 (1428)
.++++|+++.|.. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 75 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK 75 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCC
Confidence 3788999999853 2359999999999999999999999999999999999999999999875 4
Q ss_pred EEEEcCCCCCCcc-cHHHHHhcCCCC-------Ch----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 674 IAYVPQVPWILSG-TIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~~-------~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
|+||+|++.++.. ||+|||.|+... +. ++..++++..+|.... .....+||||||||
T Consensus 76 i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QR 144 (353)
T PRK10851 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQR 144 (353)
T ss_pred EEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 9999999999864 999999987431 21 2344555555554322 34456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSAD 819 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~e 819 (1428)
|+|||||+.+|+++|||||||+||+.+.+.+.+. +.... ..++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRW-LRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999988876 33312 23689999999999865 499999999999999999999
Q ss_pred HHhc
Q 000553 820 LAVS 823 (1428)
Q Consensus 820 l~~~ 823 (1428)
+...
T Consensus 224 i~~~ 227 (353)
T PRK10851 224 VWRE 227 (353)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=364.24 Aligned_cols=212 Identities=24% Similarity=0.348 Sum_probs=179.5
Q ss_pred EEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh-HhHhcceEEE
Q 000553 1194 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFAVV 1272 (1428)
Q Consensus 1194 f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i~~V 1272 (1428)
++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|+++++|
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 469999999999999999999999999999999999999999999999999976554 4467889999
Q ss_pred eCCccccCC-cHHHhcCcCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1273 PQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1273 pQdp~lf~g-TIR~NLdp~~~------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
||++.+|.. |+++|+..... .+.++.++ ...+.++.+|++........+||||||||++|||||+++|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999987765 99999974321 12222221 1334555567766666667789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999998753 47899999999999876 8999999999999999988874
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=364.43 Aligned_cols=211 Identities=24% Similarity=0.381 Sum_probs=177.9
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh-HhHhcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i 1269 (1428)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 5899999999964 369999999999999999999999999999999999999999999999999975543 4567889
Q ss_pred EEEeCCccccCC-cHHHhcCcCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1342 (1428)
+||||+|.+|++ |+++|+..... .+..+..+ .+.+.++.+|++.........||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 999999998876 99999975321 11112111 2334555557765455566689999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecCh
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1408 (1428)
Q Consensus 1343 ~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p 1408 (1428)
++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.+++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999998764 47899999999999876 899999999999977654
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=321.59 Aligned_cols=193 Identities=20% Similarity=0.249 Sum_probs=162.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999875 34567889999
Q ss_pred EeCCccccC-CcHHHhcCcCCCC--ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~~~--~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~IL 1348 (1428)
+||++.+++ .|+++|+...... .+.+ +.+.++.++++...+....+||+|||||++||||++++|++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~---------~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVG---------ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHH---------HHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999998875 6999998643211 1122 334444445544444444579999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhcCEEEE
Q 000553 1349 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILI 1396 (1428)
Q Consensus 1349 lLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~V 1396 (1428)
||||||++||..+.+.+.+.|++.. +++|+|++||+.+.+.+||.-++
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999998753 58999999999999999986543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=320.99 Aligned_cols=189 Identities=29% Similarity=0.438 Sum_probs=161.5
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|+... ..+++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPDL----PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCCC----cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 4689999999996421 2359999999999999999999999999999999999999999999875
Q ss_pred --cEEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000553 673 --SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1428)
Q Consensus 673 --~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 750 (1428)
.|+||+|+|.++++|++||+.+...+++++. .+++. ++++..+||||||||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~---~~~l~---------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEI---YGALR---------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHH---HHHhh---------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 4999999999999999999987554443332 22221 345678999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecC
Q 000553 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 751 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 816 (1428)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++.+.|+
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKT-IRE-EFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999888776 433 345789999999999988899999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=339.71 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=169.1
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+.... ....+|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 3789999999964321 112469999999999999999999999999999999999999999998742
Q ss_pred -------------------------cEEEEcCCC--CCCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhc
Q 000553 673 -------------------------SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISL 718 (1428)
Q Consensus 673 -------------------------~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~ 718 (1428)
.||||+|+| .+++.||+|||.|+.. .++ ++..++++.++|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-- 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY-- 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh--
Confidence 379999987 5788899999998742 232 3445566666664322
Q ss_pred ccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh
Q 000553 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798 (1428)
Q Consensus 719 l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~ 798 (1428)
.+....+||||||||++|||||+.+|+++||||||++||+...+.+.+. +......|+|+|++||+++.+.
T Consensus 159 --------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 159 --------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI-FDNLNKQGKTIILVTHDLDNVL 229 (305)
T ss_pred --------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeeCHHHHH
Confidence 2345679999999999999999999999999999999999998888776 3321234789999999999865
Q ss_pred -cCCEEEEEeCCeEEEecChHHHHh
Q 000553 799 -AADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 799 -~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
.||+|++|++|++++.|+++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhc
Confidence 599999999999999999998754
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=346.87 Aligned_cols=202 Identities=27% Similarity=0.380 Sum_probs=169.8
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCC--eEEEEcC---------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASG--------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~--G~i~~~~--------- 672 (1428)
..++++|+++.|.. . .+|+|+||++++|++++|+|||||||||||++|+|+.+|++ |+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---N---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred eEEEEEEEEEEECC---e---EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH
Confidence 45889999999963 1 35999999999999999999999999999999999999999 9999875
Q ss_pred --cEEEEcCCCCCCcc-cHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 --SIAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.|+||+|++.+|.. ||+|||.|+.. .+ .++.+++++..+|+...+ ....+|||||||||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-----------HLPAQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-----------CChhhCCHHHHHHH
Confidence 49999999999865 99999998642 22 234556666666654333 34458999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC--CceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHH
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSAD 819 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~--~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~e 819 (1428)
+|||||..+|+++|||||||+||+...+.+.+.+ .....+ +.|+|+|||+.+.+. .||+|++|++|++++.|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEI-AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH-HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999888763 321222 689999999999865 599999999999999999999
Q ss_pred HHhc
Q 000553 820 LAVS 823 (1428)
Q Consensus 820 l~~~ 823 (1428)
+...
T Consensus 226 ~~~~ 229 (362)
T TIGR03258 226 LYDA 229 (362)
T ss_pred HHhC
Confidence 8643
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=329.84 Aligned_cols=196 Identities=22% Similarity=0.290 Sum_probs=145.1
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.+-+.||+|.|+.. .|.+++++|-|.--.+|+||||+|-|||||+++|.|-++|+.|+..=+ -|=+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 56789999999754 578999999999999999999999999999999999999999987543 255788
Q ss_pred EEeCCcc-cc--CCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhh-cCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1271 VVPQSPF-LF--EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK-ESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~VpQdp~-lf--~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~-e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
..-|..- -+ ..|--+.|.-.-...-++-..+|-..|| .+... -.-..||||||-|+++|-.-++.|+
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL---------~sHAHTikikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGL---------ASHAHTIKIKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhh---------hhccceEeeeecCCcchHHHHHHHHhcCCCC
Confidence 8888652 11 2243343321111122333444444443 32211 0123699999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhhcCE-EEEEeCCeEEEe-cChh
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDE-ILILDHGHLVEQ-GNPQ 1409 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~~Dr-I~Vl~~G~ive~-g~p~ 1409 (1428)
||||||||.+||.++-..+-++|+++ +..||+|+|+-..|..-|. .+|+++-.|-|. |.++
T Consensus 725 vlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHH
Confidence 99999999999999999999999876 4469999999998876543 566666555543 4443
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=348.62 Aligned_cols=200 Identities=28% Similarity=0.408 Sum_probs=168.3
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------c
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~ 673 (1428)
.++++|+++.|.. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 3 ~l~i~~l~~~~~~---~---~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~ 76 (369)
T PRK11000 3 SVTLRNVTKAYGD---V---VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76 (369)
T ss_pred EEEEEEEEEEeCC---e---EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCC
Confidence 3789999999853 1 359999999999999999999999999999999999999999999875 4
Q ss_pred EEEEcCCCCCCcc-cHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 674 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
|+|++|++.++.. ||+|||.|+.. .+ .++.+++++.++++...+ ....+|||||||||+||
T Consensus 77 i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIG 145 (369)
T ss_pred EEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999998865 99999998743 22 234566677777654333 34458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHh
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
|||+.+|+++|||||||+||+...+.+.+. +..... .+.|+|+|||+++.+. .||+|++|++|++.+.|+++++..
T Consensus 146 raL~~~P~lLLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999988776 332122 3789999999999875 599999999999999999998854
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=329.00 Aligned_cols=198 Identities=33% Similarity=0.455 Sum_probs=164.2
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------cE
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~i 674 (1428)
++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 76 (239)
T cd03296 3 IEVRNVSKRFGD---F---VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV 76 (239)
T ss_pred EEEEeEEEEECC---E---EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccce
Confidence 678999999863 2 359999999999999999999999999999999999999999998875 48
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC-------Ch----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 675 AYVPQVPWILS-GTIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 675 ~y~~Q~p~l~~-~ti~~nI~~g~~~-------~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
+|++|+|.++. .|++||+.++... +. ++..+.++.++++.. ......+||||||||+
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl 145 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQRQRV 145 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHH
Confidence 99999998885 5999999876321 21 223444555555332 2344568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHH
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el 820 (1428)
+||||++.+|+++||||||++||+++.+.+.+. +..... .++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999988875 333122 3789999999999865 4999999999999999998887
Q ss_pred H
Q 000553 821 A 821 (1428)
Q Consensus 821 ~ 821 (1428)
.
T Consensus 225 ~ 225 (239)
T cd03296 225 Y 225 (239)
T ss_pred h
Confidence 5
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=362.34 Aligned_cols=221 Identities=24% Similarity=0.402 Sum_probs=179.9
Q ss_pred cEEEEEEEEEECCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCCChH
Q 000553 1191 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~-----~~G~I~IDG~di~~i~~~ 1263 (1428)
.|+++|++++|+.+ ..++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999632 24699999999999999999999999999999999999987 799999999999877654
Q ss_pred h---Hh-cceEEEeCCcc--ccC-CcHHHhcCcC----CCCChHHHHHHHHHccHHHHHHhCCCch---hhhcCCCCCCh
Q 000553 1264 D---LR-GRFAVVPQSPF--LFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLET---FVKESGISFSV 1329 (1428)
Q Consensus 1264 ~---lR-~~i~~VpQdp~--lf~-gTIR~NLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLdt---~v~e~G~~LSg 1329 (1428)
. .| +++++|||+|. +++ -|+++|+... ...+.++..+ .+.+.++.+|++. ........|||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 3 34 57999999985 444 4899987521 1122221111 1233444446642 23556678999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1330 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1330 GQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||||++|++|++++.|
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998854 37899999999999876 8999999999999999
Q ss_pred ChhHHhccCC
Q 000553 1407 NPQTLLQDEC 1416 (1428)
Q Consensus 1407 ~p~eLl~~~~ 1416 (1428)
++++++..+.
T Consensus 240 ~~~~~~~~~~ 249 (529)
T PRK15134 240 RAATLFSAPT 249 (529)
T ss_pred CHHHHhhCCC
Confidence 9999976543
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=301.82 Aligned_cols=213 Identities=25% Similarity=0.364 Sum_probs=182.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
|+.+|++++-. .+.+|+++||+++|||.+||+||||||||||+++|.|...|++|++.++|+++++.+..++-++-++
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 67889987764 3569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCccc-cCCcHHHhcCcCC----C---C-ChHH-HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1272 VPQSPFL-FEGSLRDNLDPFH----M---N-DDLK-IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1272 VpQdp~l-f~gTIR~NLdp~~----~---~-~d~e-i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
.||+..+ |+-|++|-+.++. . . .|++ ..+++.++.+..+- +..-..||||||||+.|||.|
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la---------~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA---------GRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh---------ccchhhcCchHHHHHHHHHHH
Confidence 9999876 8999999875442 1 1 2233 45677777654322 222336999999999999999
Q ss_pred cc------CCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1342 LK------SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1342 L~------~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
.. ++++|+||||||+||..-...+.++.|+.. +++.|+.|=|+|+.... ||||++|.+||++..|+|++.+.
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 86 357999999999999999999999998875 58999999999998765 79999999999999999999998
Q ss_pred cC
Q 000553 1414 DE 1415 (1428)
Q Consensus 1414 ~~ 1415 (1428)
.+
T Consensus 231 ~E 232 (259)
T COG4559 231 DE 232 (259)
T ss_pred HH
Confidence 64
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=325.63 Aligned_cols=205 Identities=27% Similarity=0.444 Sum_probs=173.6
Q ss_pred CCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC---------
Q 000553 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1428)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--------- 672 (1428)
....++++|+++.|+.... ..+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPD---TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred cCceEEEEEEEEEeCCCCC---CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHH
Confidence 3467899999999974321 2359999999999999999999999999999999999999999998875
Q ss_pred ----cEEEEcCCCCCCcccHHHHHhcCCCC-ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHH
Q 000553 673 ----SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1428)
Q Consensus 673 ----~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARa 747 (1428)
.++|++|+|.+++.|++||+.++... ....+.+..+...++.-++.++.|.++..+.+..+|||||||||+||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 85 YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred HHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 48999999999999999999876432 2222333334455666778888787788899999999999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeE
Q 000553 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811 (1428)
Q Consensus 748 ly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i 811 (1428)
++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||+|++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQA-LYD-WPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999988876 333 3346899999999999988999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=328.50 Aligned_cols=197 Identities=28% Similarity=0.396 Sum_probs=162.4
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCc-----cCCCeEEEEcC--------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM-----MLTHGSIHASG-------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~-----~~~~G~i~~~~-------- 672 (1428)
++++|+++.|+. ..+|+|+||++++||+++|+|+||||||||+++|+|.+ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 357889998853 13599999999999999999999999999999999999 99999998765
Q ss_pred -------cEEEEcCCCCCCcccHHHHHhcCCCC----C----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchH
Q 000553 673 -------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1428)
Q Consensus 673 -------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGG 737 (1428)
.++|++|++.+++.|++||+.++... + +++..++++.+++...+...++ +.+||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG 145 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGG 145 (227)
T ss_pred HHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHH
Confidence 38999999998878999999875321 1 2344556666666544332211 4689999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecC
Q 000553 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 738 QkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~ 816 (1428)
||||++||||++.+|+++||||||++||+.+.+.+++. +.. +.+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 146 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 146 QQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL-IAE-LKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999988876 333 222389999999999876 599999999999999987
Q ss_pred hHH
Q 000553 817 SAD 819 (1428)
Q Consensus 817 ~~e 819 (1428)
+++
T Consensus 224 ~~~ 226 (227)
T cd03260 224 TEQ 226 (227)
T ss_pred ccc
Confidence 654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=335.61 Aligned_cols=199 Identities=29% Similarity=0.391 Sum_probs=168.0
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+.. ..+|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 4 IIEVEDLHFRYKDG-----TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred eEEEEEEEEEeCCC-----CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 47899999999631 2359999999999999999999999999999999999999999998876
Q ss_pred -cEEEEcCCC--CCCcccHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 -SIAYVPQVP--WILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 -~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.|+|++|+| .+++.||+||+.|+.. .+ ++++.++++.++|...... ....||||||||+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv 147 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRV 147 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHH
Confidence 489999998 5788899999998632 22 2355667777777644433 3348999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHH
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el 820 (1428)
+||||+..+|+++||||||++||+.+.+.+++. +.....+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI-LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999988876 4331234789999999999985 5999999999999999998654
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=322.31 Aligned_cols=195 Identities=24% Similarity=0.315 Sum_probs=164.3
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++|++++|++ +++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 6999999999964 3699999999999999999999999999999999999999999999999998752 3456799
Q ss_pred EEeCCccccCC-cHHHhcCcCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1271 ~VpQdp~lf~g-TIR~NLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
++||+|.+|++ |+++|+.... ...++.+.++++. +|++.........||+|||||++||||++++|
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAI---------VGLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHH---------cCChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999887 9999985421 1112223333333 35544444555689999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeC
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDH 1399 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~ 1399 (1428)
+||+|||||++||.++.+.+.+.+++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999997653 47899999999999976 799999875
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=329.91 Aligned_cols=203 Identities=22% Similarity=0.293 Sum_probs=170.3
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc---CCCeEEEEcC---------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM---LTHGSIHASG--------- 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~---~~~G~i~~~~--------- 672 (1428)
.++++|+++.|+. . .+|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK---K---QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC---E---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 4678999999963 2 35999999999999999999999999999999999974 6899998875
Q ss_pred ----cEEEEcCCCCCCcccHHHHHhcCCCC---------ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHH
Q 000553 673 ----SIAYVPQVPWILSGTIRDNILFGKNY---------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1428)
Q Consensus 673 ----~i~y~~Q~p~l~~~ti~~nI~~g~~~---------~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQk 739 (1428)
.++|++|+|.+++.|++||+.++... ++++..++++.+++...+.. ...+++.+||||||
T Consensus 76 ~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 148 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQ 148 (246)
T ss_pred HHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHH
Confidence 48999999999999999999875311 12245567777777654432 23456779999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChH
Q 000553 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 740 qRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 818 (1428)
|||+||||++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 149 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL-LKE-LSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999888776 433 335789999999999876 59999999999999999988
Q ss_pred HHHh
Q 000553 819 DLAV 822 (1428)
Q Consensus 819 el~~ 822 (1428)
++..
T Consensus 227 ~~~~ 230 (246)
T PRK14269 227 EFFE 230 (246)
T ss_pred HHHh
Confidence 8753
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=324.54 Aligned_cols=191 Identities=30% Similarity=0.407 Sum_probs=158.2
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------cEE
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIA 675 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~i~ 675 (1428)
+++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 ~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03259 2 ELKGLSKTYGS---V---RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG 75 (213)
T ss_pred eeeeeEEEeCC---e---eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE
Confidence 57889998853 2 359999999999999999999999999999999999999999998865 489
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHH
Q 000553 676 YVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1428)
Q Consensus 676 y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARa 747 (1428)
|++|+|.++. .|++||+.++.. .+. ++.+++++.+++...+. ....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHH
Confidence 9999998775 599999987532 122 23455666666654333 3445899999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 748 ly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988876 332122 37899999999998764 9999999999998764
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=393.22 Aligned_cols=219 Identities=24% Similarity=0.332 Sum_probs=190.6
Q ss_pred ccEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
..|+++|++++|+++...+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.|+.+ .....|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996444579999999999999999999999999999999999999999999999999975 566789999
Q ss_pred EEEeCCccccCC-cHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
+++||++.+|+. |++|||.++.. .+.++..+ ...+.++.+||+...+....+||||||||++|||||+.+|
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999975 99999975421 12222211 1234455557776677777899999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++.+|.++
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999988779999999999999976 899999999999999999999764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=362.37 Aligned_cols=212 Identities=19% Similarity=0.262 Sum_probs=180.2
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 3899999999964 35999999999999999999999999999999999999999999999999887777777888899
Q ss_pred EEeCCccc--c-------CCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1271 VVPQSPFL--F-------EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1271 ~VpQdp~l--f-------~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
++||+|.+ + .-|+++|+.... ..++++.++++. +|++.........||||||||++|||||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~---------~~l~~~~~~~~~~LSgG~~qrv~la~al 150 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQ---------FGITALLDRRFKYLSTGETRKTLLCQAL 150 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHH---------cCCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence 99999753 2 348899885421 112233344444 4555445555668999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhcc
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~ 1414 (1428)
+++|++|||||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|++++++++
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 99999999999999999999999999998764 47899999999999987 799999999999999999998764
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=318.63 Aligned_cols=196 Identities=27% Similarity=0.434 Sum_probs=168.2
Q ss_pred cEEEEEEEEEECCCC-------CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH
Q 000553 1191 LIEFQNVTMRYKPSL-------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1263 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~-------~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~ 1263 (1428)
.++.+|++..|+... ..+++||||+|++||.+||||.|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999997432 36899999999999999999999999999999999999999999999999987666
Q ss_pred hHhcceEEEeCCccccCCcHHHhcCcCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000553 1264 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1264 ~lR~~i~~VpQdp~lf~gTIR~NLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~ 1343 (1428)
....++++.+.|+.+|+.+. ........||||||||++|||||.-
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~--------~~~ryPhelSGGQrQRi~IARALal 126 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEE--------FLYRYPHELSGGQRQRIGIARALAL 126 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHH--------HhhcCCcccCchhhhhHHHHHHHhh
Confidence 11123456666666664332 3445566899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHH
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420 (1428)
Q Consensus 1344 ~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~ 1420 (1428)
+|++++.|||||+||.-..+.|.+.+.+.- .+-|.++|||+++.++. ||||.||..|+|||.|+-+++.+++.-.|-
T Consensus 127 ~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYT 206 (268)
T COG4608 127 NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYT 206 (268)
T ss_pred CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHH
Confidence 999999999999999999999999987653 38899999999999997 799999999999999999999998876666
Q ss_pred HHH
Q 000553 1421 SFV 1423 (1428)
Q Consensus 1421 ~l~ 1423 (1428)
+..
T Consensus 207 k~L 209 (268)
T COG4608 207 KAL 209 (268)
T ss_pred HHH
Confidence 544
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=329.15 Aligned_cols=198 Identities=25% Similarity=0.360 Sum_probs=163.1
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--------------
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-------------- 672 (1428)
+++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (236)
T cd03219 2 EVRGLTKRFGG---L---VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75 (236)
T ss_pred eeeeeEEEECC---E---EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhc
Confidence 57888998852 2 359999999999999999999999999999999999999999998865
Q ss_pred cEEEEcCCCCCCcc-cHHHHHhcCCCC-------------C----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCcc
Q 000553 673 SIAYVPQVPWILSG-TIRDNILFGKNY-------------D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734 (1428)
Q Consensus 673 ~i~y~~Q~p~l~~~-ti~~nI~~g~~~-------------~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~L 734 (1428)
.++|++|+|.++.+ ||+|||.++... + .++..+.++..+++ ...+....+|
T Consensus 76 ~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~L 144 (236)
T cd03219 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGEL 144 (236)
T ss_pred CEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhC
Confidence 38999999998876 999999876321 1 11233334444332 2335566799
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEE
Q 000553 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKW 813 (1428)
Q Consensus 735 SGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~ 813 (1428)
|||||||++||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL-IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999988886 33212257899999999999865 99999999999999
Q ss_pred ecChHHHHh
Q 000553 814 IGSSADLAV 822 (1428)
Q Consensus 814 ~g~~~el~~ 822 (1428)
.|+++++..
T Consensus 224 ~~~~~~~~~ 232 (236)
T cd03219 224 EGTPDEVRN 232 (236)
T ss_pred ecCHHHhcc
Confidence 999888753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.52 Aligned_cols=204 Identities=24% Similarity=0.332 Sum_probs=168.7
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc-----CCCeEEEEcC------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------ 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~-----~~~G~i~~~~------ 672 (1428)
..++++|+++.|+. . .+|+|+||++++||+++|+||||||||||+++|+|..+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD---F---QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC---e---eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 45899999999953 2 35999999999999999999999999999999999864 5899998764
Q ss_pred ---------cEEEEcCCCCCCcccHHHHHhcCCC---C-C----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccc
Q 000553 673 ---------SIAYVPQVPWILSGTIRDNILFGKN---Y-D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1428)
Q Consensus 673 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~---~-~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LS 735 (1428)
.++|++|++.+++.|++||+.++.. . + +++.++.++.+++...+. +..+....+||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 151 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLS 151 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999999988999999987521 1 1 234455566666643332 23456678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEe
Q 000553 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWI 814 (1428)
Q Consensus 736 GGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~ 814 (1428)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEEL-IHE-LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999988776 433 344689999999999986 4999999999999999
Q ss_pred cChHHHHh
Q 000553 815 GSSADLAV 822 (1428)
Q Consensus 815 g~~~el~~ 822 (1428)
|+++++..
T Consensus 230 g~~~~~~~ 237 (253)
T PRK14242 230 GPTEQIFT 237 (253)
T ss_pred CCHHHHHc
Confidence 99888753
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=294.38 Aligned_cols=219 Identities=24% Similarity=0.405 Sum_probs=187.2
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----------
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT---------- 1260 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i---------- 1260 (1428)
.++++|+..+|++. .|||+||++.++|+.|.|+|-|||||||+++++-=+-.|+.|+|.++|..|...
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 68999999999765 499999999999999999999999999999999999999999999999887532
Q ss_pred ---ChHhHhcceEEEeCCccccCC-cHHHhcC--cCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhH
Q 000553 1261 ---PVRDLRGRFAVVPQSPFLFEG-SLRDNLD--PFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1331 (1428)
Q Consensus 1261 ---~~~~lR~~i~~VpQdp~lf~g-TIR~NLd--p~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQ 1331 (1428)
.++.+|+++++|.|.--|++- ||-||.- |-. ...++.+..| ..++...|++..-...+..|||||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A------e~~L~kVGi~ek~~~YP~~LSGGQ 157 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA------EKYLAKVGIAEKADAYPAHLSGGQ 157 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH------HHHHHHhCchhhhhcCccccCchH
Confidence 256789999999999988875 9999973 321 2223333222 123334466666666777899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChh
Q 000553 1332 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1409 (1428)
Q Consensus 1332 rQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~ 1409 (1428)
+||.+|||||.-+|+++++|||||+||++---.+.++|++.. .|+|.++|||-+...++ +..|+.+.+|+|-|+|+|+
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~ 237 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPE 237 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChH
Confidence 999999999999999999999999999999988888888765 59999999999999998 5999999999999999999
Q ss_pred HHhccCCc
Q 000553 1410 TLLQDECS 1417 (1428)
Q Consensus 1410 eLl~~~~s 1417 (1428)
++..++.|
T Consensus 238 qvf~nP~S 245 (256)
T COG4598 238 QVFGNPQS 245 (256)
T ss_pred HHhcCCCC
Confidence 99999886
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=326.14 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=168.9
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG---K---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC---e---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 4788999998853 2 359999999999999999999999999999999999999999998875
Q ss_pred -cEEEEcCCCCCCcccHHHHHhcCCCC---ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHH
Q 000553 673 -SIAYVPQVPWILSGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~ti~~nI~~g~~~---~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARal 748 (1428)
.++|++|+|.+++.|++||+.++..+ +.++..+.++.++++.+. ......+||||||||++||||+
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred hcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHH
Confidence 38999999999989999999876432 234555667777665332 1345668999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHHh
Q 000553 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 749 y~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
+.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEEL-IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999998888775 333122 37899999999999764 99999999999999999888753
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=324.56 Aligned_cols=197 Identities=29% Similarity=0.372 Sum_probs=161.5
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--------cEEEEc
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAYVP 678 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--------~i~y~~ 678 (1428)
+++|+++.|+.... ..++|+|+||+|++|++++|+||||||||||+++|+|..+|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~~~~--~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 2 EVRNVSKTYGGGGG--AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred eEEEEEEEcCCCCc--ceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 57889998863211 12469999999999999999999999999999999999999999999876 589999
Q ss_pred CCCCCCc-ccHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000553 679 QVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1428)
Q Consensus 679 Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 750 (1428)
|+|.++. .|++||+.++.. .+ .++..+.++.++++..+. ....+||||||||++||||++.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHc
Confidence 9998887 699999987532 11 234556667776654433 2345899999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-cCCEEEEEe--CCeEEEecCh
Q 000553 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMD--KGQVKWIGSS 817 (1428)
Q Consensus 751 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~--~G~i~~~g~~ 817 (1428)
+|+++||||||++||+.+.+.+++. +.... ..++|+|++||+++.+. .||++++|+ +|+++++++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999988886 33211 23789999999999875 599999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=321.31 Aligned_cols=188 Identities=27% Similarity=0.415 Sum_probs=157.5
Q ss_pred EEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----------cEEEE
Q 000553 608 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------SIAYV 677 (1428)
Q Consensus 608 ~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------~i~y~ 677 (1428)
++|+++.|+.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~ 76 (205)
T cd03226 2 IENISFSYKKG-----TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYV 76 (205)
T ss_pred cccEEEEeCCc-----CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEE
Confidence 56778887531 2359999999999999999999999999999999999999999998876 48999
Q ss_pred cCCC--CCCcccHHHHHhcCCC---CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCC
Q 000553 678 PQVP--WILSGTIRDNILFGKN---YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752 (1428)
Q Consensus 678 ~Q~p--~l~~~ti~~nI~~g~~---~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~ 752 (1428)
+|+| .+++.|++||+.++.. .++++.+++++.+++...... ...+||||||||++||||+..+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 4677899999988643 233466778888887644332 33489999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEE
Q 000553 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 812 (1428)
Q Consensus 753 ~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~ 812 (1428)
+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGEL-IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999988775 43312357899999999999874 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=361.62 Aligned_cols=214 Identities=24% Similarity=0.368 Sum_probs=178.5
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCeeCCCCChHh-Hhcc
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRD-LRGR 1268 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~--~~G~I~IDG~di~~i~~~~-lR~~ 1268 (1428)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 4699999999999999999999999999999999999987 7999999999998777544 4678
Q ss_pred eEEEeCCccccCC-cHHHhcCcCCC-------CChHHHHHHHHHccHHHHHHhCCCchhh-hcCCCCCChhHHHHHHHHH
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICLAR 1339 (1428)
Q Consensus 1269 i~~VpQdp~lf~g-TIR~NLdp~~~-------~~d~ei~~aL~~~~l~~~i~~lgLdt~v-~e~G~~LSgGQrQrl~LAR 1339 (1428)
++||||+|.+|+. |+++|+..... .+.++..+ ...+.++.+|++... ......||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 9999999988876 99999965321 11111111 133445555665432 2335579999999999999
Q ss_pred HHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000553 1340 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1340 ALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
||+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++..
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 9999999999999999999999999999998753 47899999999999976 8999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=332.47 Aligned_cols=202 Identities=26% Similarity=0.394 Sum_probs=171.0
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+.. . .++|+|+||+|++||+++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~-~---~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 5 IIRVEHISFRYPDA-A---TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred eEEEEEEEEEeCCC-C---ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHh
Confidence 58999999999632 1 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCC--CCCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 -SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 -~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.|+|++|+| .+++.||+|||.++.. .++ ++..++++.++|+..+... ...||||||||+
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv 149 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRV 149 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHH
Confidence 489999998 4667899999988632 222 3456677777776655443 348999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHH
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
+||||++.+|+++||||||++||+.+.+.+++. +..... .+.|+|++||+++.+..||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLET-VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999988886 333122 378999999999999889999999999999999988875
Q ss_pred h
Q 000553 822 V 822 (1428)
Q Consensus 822 ~ 822 (1428)
.
T Consensus 229 ~ 229 (279)
T PRK13635 229 K 229 (279)
T ss_pred c
Confidence 4
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=324.83 Aligned_cols=190 Identities=25% Similarity=0.403 Sum_probs=157.3
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+... +.+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 2 IRFEQVSKAYPGGH----QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred eEEEEEEEEecCCC----eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 57899999985321 2359999999999999999999999999999999999999999998865
Q ss_pred ---cEEEEcCCCCCCc-ccHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
.++|++|+|.++. .|++||+.++.. .+ +++..++++.+++..... ....+||||||||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qr 146 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQR 146 (216)
T ss_pred HHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 3899999998876 599999987521 11 234566677777654333 2335899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeE
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i 811 (1428)
++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988876 33312347899999999999874 999999999974
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=342.92 Aligned_cols=204 Identities=28% Similarity=0.365 Sum_probs=167.3
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|++++|+... ....+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 67899999996321 012469999999999999999999999999999999999999999998865
Q ss_pred ---cEEEEcCCCCCCc-ccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
.|+|++|++.++. .|++||+.++.. .+. ++..+.++..+|... ......+||||||||
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qR 148 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQR 148 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 4999999999886 699999987632 222 233445555555432 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCc-ccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~-~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~e 819 (1428)
|+||||++.+|+++||||||++||+.+.+.+.+. +... ...++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999988876 3321 1237899999999999875 99999999999999999998
Q ss_pred HHhc
Q 000553 820 LAVS 823 (1428)
Q Consensus 820 l~~~ 823 (1428)
+...
T Consensus 228 ~~~~ 231 (343)
T PRK11153 228 VFSH 231 (343)
T ss_pred HHhC
Confidence 8643
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=323.98 Aligned_cols=197 Identities=21% Similarity=0.283 Sum_probs=163.0
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------c
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------~ 673 (1428)
++++|+++.|+. . .+|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD---F---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC---E---EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 367888988853 2 359999999999999999999999999999999999999999998875 4
Q ss_pred EEEEcCCCCCCcc-cHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 674 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
++|++|++.++.. |++||+.++.. .+ +++.++.++.++++.... ....+||||||||++||
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la 143 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIA 143 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHH
Confidence 8999999988765 99999986421 22 234556677777654332 23458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHH
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el 820 (1428)
||++.+|+++||||||++||+++.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEY-IEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999988876 332122 37899999999999875 999999999999998887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=333.56 Aligned_cols=187 Identities=29% Similarity=0.410 Sum_probs=156.8
Q ss_pred cceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------------cEEEEcCCCCCCc-c
Q 000553 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILS-G 686 (1428)
Q Consensus 625 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------------~i~y~~Q~p~l~~-~ 686 (1428)
.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 359999999999999999999999999999999999999999998754 4899999999885 5
Q ss_pred cHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcC
Q 000553 687 TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759 (1428)
Q Consensus 687 ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDe 759 (1428)
|++||+.++.. ++ +++..++++.+++...+... ..+||||||||++||||++.+|+++||||
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKY-----------PDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 22 23455667777776544433 34899999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHh
Q 000553 760 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 760 p~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
||++||+.+.+.+.+.+..-....++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999998887632111123789999999999875 599999999999999999988754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=326.40 Aligned_cols=214 Identities=21% Similarity=0.247 Sum_probs=175.1
Q ss_pred cEEEEEEEEEECCC------------------CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE
Q 000553 1191 LIEFQNVTMRYKPS------------------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~------------------~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~I 1252 (1428)
.|+++||+..|+.. ..++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57888888877542 235899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCChHhHhcceEEEeCCccccC-CcHHHhcCcC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCC
Q 000553 1253 DGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1328 (1428)
Q Consensus 1253 DG~di~~i~~~~lR~~i~~VpQdp~lf~-gTIR~NLdp~---~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS 1328 (1428)
||. +++++|++.+++ .|+++|+... ...+.++..+.. .+.++..+++..+......||
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~LS 145 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT-----PKIIEFSELGEFIYQPVKKYS 145 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHcCCchhhcCCcccCC
Confidence 994 457788887665 4999998542 122333332221 222333367666777778999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1329 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1329 gGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
+|||||++||||++++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g 225 (264)
T PRK13546 146 SGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225 (264)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999987753 48899999999999876 8999999999999999
Q ss_pred ChhHHhccCCcHHHHH
Q 000553 1407 NPQTLLQDECSVFSSF 1422 (1428)
Q Consensus 1407 ~p~eLl~~~~s~f~~l 1422 (1428)
++++++++.+..|+..
T Consensus 226 ~~~~~~~~~~~~~~~~ 241 (264)
T PRK13546 226 ELDDVLPKYEAFLNDF 241 (264)
T ss_pred CHHHHHHHhHHHHHHH
Confidence 9999998665444443
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=343.49 Aligned_cols=204 Identities=26% Similarity=0.364 Sum_probs=169.1
Q ss_pred CceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----------
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---------- 672 (1428)
...++++|+++.|.. . .+|+|+||++++|++++|+|||||||||||++|+|..+|++|+|.++|
T Consensus 17 ~~~l~l~~v~~~~~~---~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---Q---HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred CceEEEEeEEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 346899999999853 1 359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCCCCcc-cHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHH
Q 000553 673 -SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 743 (1428)
.||||+|++-+|.. ||.|||.|+.. .+. ++..++++..++.... .....+|||||||||+
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVa 159 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVA 159 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 48999999999865 99999998742 222 2344556666665332 3345589999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHHh
Q 000553 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 744 lARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
|||||+.+|+++|||||||+||+...+.+.+.+..-....+.|+|+|||+.+.+. .||+|++|++|++++.|+++++..
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999988876532111224789999999999864 599999999999999999999864
Q ss_pred c
Q 000553 823 S 823 (1428)
Q Consensus 823 ~ 823 (1428)
.
T Consensus 240 ~ 240 (377)
T PRK11607 240 H 240 (377)
T ss_pred C
Confidence 3
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=369.40 Aligned_cols=217 Identities=24% Similarity=0.361 Sum_probs=188.8
Q ss_pred cEEEEEEEEEECCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhH---
Q 000553 1191 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL--- 1265 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~l--- 1265 (1428)
.++++|++++|+.+ .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999643 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred -hcceEEEeCCccccCC-cHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000553 1266 -RGRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1266 -R~~i~~VpQdp~lf~g-TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1340 (1428)
|++++++||+|.+|++ |+.||++... ..+.++ .+....+.++.+|++..++..+..||+||+||++||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 6789999999999975 9999996421 111111 11223455666688877777888999999999999999
Q ss_pred HccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhhcCEEEEEeCCeEEEecChhHHh
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1412 (1428)
Q Consensus 1341 LL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~g~p~eLl 1412 (1428)
|+++|++|||||||++||.++.+.+.+.|++.. +++|+|+|+|+++.+..|||+++|++|++++.|+++|..
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999998764 489999999999999889999999999999999999886
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=331.92 Aligned_cols=200 Identities=27% Similarity=0.413 Sum_probs=167.0
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|++++|+.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (274)
T PRK13644 2 IRLENVSYSYPDG-----TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIR 76 (274)
T ss_pred EEEEEEEEEcCCC-----CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHH
Confidence 5789999998531 2359999999999999999999999999999999999999999998764
Q ss_pred -cEEEEcCCCC--CCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 -~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.++|++|+|. +++.|++|||.++.. .++ ++.+++++.++++... ......||||||||+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv 145 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCV 145 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHH
Confidence 3899999986 567899999988632 222 3345556666665432 334568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHh
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
+||||++.+|+++||||||++||+.+.+.+++. +.....+|.|+|++||+++.++.||+|++|++|++++.|+.+++..
T Consensus 146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999988876 3321234789999999999998899999999999999999888753
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.75 Aligned_cols=198 Identities=25% Similarity=0.341 Sum_probs=162.8
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+.... ..++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSV--QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCc--ceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4789999999964211 12469999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCCCCCcc-cHHHHHhcCC---CCCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHH
Q 000553 673 -----SIAYVPQVPWILSG-TIRDNILFGK---NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1428)
Q Consensus 673 -----~i~y~~Q~p~l~~~-ti~~nI~~g~---~~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQk 739 (1428)
.++|++|+|.++.. |++||+.++. ..++ ++..++++.+++... ......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~ 151 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGER 151 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHH
Confidence 38999999988865 9999998742 1222 234556666665432 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhcCCEEEEEeCCeEEEecC
Q 000553 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 740 qRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 816 (1428)
||++||||++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL-LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999988875 33211 24789999999999999899999999999998764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=327.93 Aligned_cols=204 Identities=26% Similarity=0.335 Sum_probs=167.9
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC-----CCeEEEEcC------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~-----~~G~i~~~~------ 672 (1428)
..++++|+++.|+. . .+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD---F---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC---c---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 46899999999853 1 259999999999999999999999999999999999987 489998754
Q ss_pred ---------cEEEEcCCCCCCcccHHHHHhcCCCC----Ch----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccc
Q 000553 673 ---------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1428)
Q Consensus 673 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LS 735 (1428)
.++|++|+|.+++.||+|||.++... +. ++..++++.+++...+. .....++.+||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 152 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLS 152 (254)
T ss_pred cccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCC
Confidence 38999999999989999999886421 21 23344555555532221 12344677999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEe
Q 000553 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1428)
Q Consensus 736 GGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 814 (1428)
|||||||+||||++.+|+++||||||++||+.+.+.+++. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL-IIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999988876 433 3456899999999999754 999999999999999
Q ss_pred cChHHHHh
Q 000553 815 GSSADLAV 822 (1428)
Q Consensus 815 g~~~el~~ 822 (1428)
|+++++..
T Consensus 231 g~~~~~~~ 238 (254)
T PRK14273 231 SSTDELFF 238 (254)
T ss_pred CCHHHHHh
Confidence 99988754
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=327.96 Aligned_cols=202 Identities=27% Similarity=0.375 Sum_probs=166.9
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCC-----CeEEEEcC--------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASG-------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~-----~G~i~~~~-------- 672 (1428)
++++|+++.|+. . .+++|+||+|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFYGE---K---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEECC---e---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 678999999863 1 2599999999999999999999999999999999999998 99998754
Q ss_pred -------cEEEEcCCCCCCcccHHHHHhcCCC----CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchH
Q 000553 673 -------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1428)
Q Consensus 673 -------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGG 737 (1428)
.++|++|++++++.|++||+.++.. .+. ++..++++..++..++. ........+||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 148 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGG 148 (247)
T ss_pred chHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHH
Confidence 3899999999988999999987532 121 23445555556653221 1234566799999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecC
Q 000553 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 738 QkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~ 816 (1428)
||||++||||++.+|+++||||||++||+.+.+.+++. +.. +.+++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL-IQE-LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999988775 433 334589999999999876 599999999999999999
Q ss_pred hHHHHh
Q 000553 817 SADLAV 822 (1428)
Q Consensus 817 ~~el~~ 822 (1428)
++++..
T Consensus 227 ~~~~~~ 232 (247)
T TIGR00972 227 TEQIFT 232 (247)
T ss_pred HHHHHh
Confidence 888753
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=322.79 Aligned_cols=198 Identities=26% Similarity=0.439 Sum_probs=164.2
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------c
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------~ 673 (1428)
++++|+++.|+.. + .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~~-~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG-T---KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC-C---ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 3578899988532 1 2359999999999999999999999999999999999999999998865 3
Q ss_pred EEEEcCCCCCC-cccHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 674 IAYVPQVPWIL-SGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 i~y~~Q~p~l~-~~ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
++|++|+|.++ +.|++||+.++.. .+ +++.+++++.+++.... .....+||||||||++||
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLA 145 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHH
Confidence 89999999887 5699999986421 22 23455667777665332 233458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHH
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el 820 (1428)
||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 146 ~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDL-ILE-VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHhcCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999988876 333 3346899999999999865 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=327.29 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=163.0
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|..+ ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR02315 2 LEVENLSKVYPNG-----KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76 (243)
T ss_pred eEEEeeeeecCCC-----cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHH
Confidence 5688999988521 2359999999999999999999999999999999999999999998865
Q ss_pred ---cEEEEcCCCCCCc-ccHHHHHhcCCCC---------------ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCc
Q 000553 673 ---SIAYVPQVPWILS-GTIRDNILFGKNY---------------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~~---------------~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~ 733 (1428)
.++|++|++.++. .|++||+.++... +.++..++++.+++... ......+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~ 145 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQ 145 (243)
T ss_pred HHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCccc
Confidence 2899999998876 5999999875310 12234455555555432 2345678
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeE
Q 000553 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQV 811 (1428)
Q Consensus 734 LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i 811 (1428)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||++++|++|++
T Consensus 146 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i 224 (243)
T TIGR02315 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY-LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224 (243)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 999999999999999999999999999999999999888776 333122 3789999999999985 5999999999999
Q ss_pred EEecChHHH
Q 000553 812 KWIGSSADL 820 (1428)
Q Consensus 812 ~~~g~~~el 820 (1428)
++.|+++++
T Consensus 225 ~~~~~~~~~ 233 (243)
T TIGR02315 225 VFDGAPSEL 233 (243)
T ss_pred EecCCHHHh
Confidence 999988775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.43 Aligned_cols=191 Identities=26% Similarity=0.369 Sum_probs=156.5
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--------------
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-------------- 672 (1428)
+++|+++.|+.... ...+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~~~--~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 2 ELKNLSKTYGGGGE--KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred eEeeeEEEecCCCc--ceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 57899999864210 12469999999999999999999999999999999999999999998754
Q ss_pred ---cEEEEcCCCCCCcc-cHHHHHhcCCCC---C----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 ---SIAYVPQVPWILSG-TIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~---~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
.++|++|+|.++.. |++||+.++..+ + +++..++++..+++... .....+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr 148 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQR 148 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHH
Confidence 48999999988876 999999876432 1 23455566666654332 34456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhcCCEEEEEeCCeE
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQV 811 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i 811 (1428)
++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+..||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMEL-LRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999988776 333122 37899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=335.98 Aligned_cols=202 Identities=25% Similarity=0.374 Sum_probs=167.8
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 6 APIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred ceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHH
Confidence 46899999999953 2359999999999999999999999999999999999999999999875
Q ss_pred -cEEEEcCCCCCCc-ccHHHHHhc-CCC--CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHH
Q 000553 673 -SIAYVPQVPWILS-GTIRDNILF-GKN--YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~-~ti~~nI~~-g~~--~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 743 (1428)
.||||||+|.++. .|++||+.| +.. .+. ++.+++++.++|.... .....+||||||||++
T Consensus 80 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 148 (306)
T PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLT 148 (306)
T ss_pred hcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHH
Confidence 4999999998875 599999985 321 122 2334455555554322 2233589999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHHh
Q 000553 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 744 lARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
||||+.++|++++|||||++||+...+.+++. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999988876 43312347899999999999875 99999999999999999999865
Q ss_pred c
Q 000553 823 S 823 (1428)
Q Consensus 823 ~ 823 (1428)
.
T Consensus 228 ~ 228 (306)
T PRK13537 228 S 228 (306)
T ss_pred c
Confidence 4
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=323.17 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=163.0
Q ss_pred EEEEEEEEEECCC-----CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC--C--eeCCCCCh
Q 000553 1192 IEFQNVTMRYKPS-----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD--G--LNIINTPV 1262 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~-----~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~ID--G--~di~~i~~ 1262 (1428)
|+++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+| | +++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 2469999999999999999999999999999999999999999999998 4 36666665
Q ss_pred Hh---H-hcceEEEeCCccccCC-cHHHhcCcC---CCCChHHHHHHHHHccHHHHHHhCCCchh-hhcCCCCCChhHHH
Q 000553 1263 RD---L-RGRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQ 1333 (1428)
Q Consensus 1263 ~~---l-R~~i~~VpQdp~lf~g-TIR~NLdp~---~~~~d~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQ 1333 (1428)
.. + +++++|+||+|.+|+. |+++|+... .....++..+ ...+.++.+|++.. ....+.+||+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 43 3 4679999999988875 999998631 1111111111 12344455566543 34566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEE
Q 000553 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILIL 1397 (1428)
Q Consensus 1334 rl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl 1397 (1428)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||||+.+
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999998764 47899999999999874 8999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=316.90 Aligned_cols=194 Identities=23% Similarity=0.320 Sum_probs=162.9
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceE
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1270 (1428)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|++++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 3789999999964 369999999999999999999999999999999999999999999999998753 1 2788999
Q ss_pred EEeCCcccc-CCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000553 1271 VVPQSPFLF-EGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~VpQdp~lf-~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ 1346 (1428)
+++|++.++ ..|+++|+..... ..++++.++++..++. .........||+|||||++||||++++|+
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~---------~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLA---------PLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH---------HHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999988765 5799999864321 2233455555555443 33333445799999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhhhhcCEEEEEeC
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILILDH 1399 (1428)
Q Consensus 1347 ILlLDEaTS~lD~~te~~Iq~~i~~~-~~~~TvI~IaHrl~ti~~~DrI~Vl~~ 1399 (1428)
+|||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999875 358999999999999998 99988754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=326.48 Aligned_cols=198 Identities=26% Similarity=0.378 Sum_probs=162.2
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--------------
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-------------- 672 (1428)
+++|+++.|+.+ ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (241)
T cd03256 2 EVENLSKTYPNG-----KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76 (241)
T ss_pred EEeeEEEecCCc-----cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHH
Confidence 578889988531 2359999999999999999999999999999999999999999998764
Q ss_pred --cEEEEcCCCCCCc-ccHHHHHhcCCC------------CC---hHHHHHHHHHhcchHHHhcccCCCcccccCCCCcc
Q 000553 673 --SIAYVPQVPWILS-GTIRDNILFGKN------------YD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734 (1428)
Q Consensus 673 --~i~y~~Q~p~l~~-~ti~~nI~~g~~------------~~---~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~L 734 (1428)
.++|++|++.++. .|++||+.++.. .+ .++..++++..++.. .....+.+|
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~L 145 (241)
T cd03256 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQL 145 (241)
T ss_pred HhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccC
Confidence 3899999998776 699999987531 11 122334444444432 234566799
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeEE
Q 000553 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVK 812 (1428)
Q Consensus 735 SGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~ 812 (1428)
||||||||+||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||++++|++|+++
T Consensus 146 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999988876 332122 3789999999999988 59999999999999
Q ss_pred EecChHHHH
Q 000553 813 WIGSSADLA 821 (1428)
Q Consensus 813 ~~g~~~el~ 821 (1428)
+.|+++++.
T Consensus 225 ~~~~~~~~~ 233 (241)
T cd03256 225 FDGPPAELT 233 (241)
T ss_pred eecCHHHhh
Confidence 999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=318.00 Aligned_cols=192 Identities=24% Similarity=0.332 Sum_probs=161.4
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------cE
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~i 674 (1428)
++++|+++.|+. . ++|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~---~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 74 (208)
T cd03268 1 LKTNDLTKTYGK---K---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74 (208)
T ss_pred CEEEEEEEEECC---e---EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhE
Confidence 357899998852 2 359999999999999999999999999999999999999999999876 48
Q ss_pred EEEcCCCCCC-cccHHHHHhcCC---CCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000553 675 AYVPQVPWIL-SGTIRDNILFGK---NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1428)
Q Consensus 675 ~y~~Q~p~l~-~~ti~~nI~~g~---~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 750 (1428)
+||+|++.++ +.|++||+.++. ..++++.+++++..+++.... .....|||||||||+||||++.
T Consensus 75 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~ 143 (208)
T cd03268 75 GALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLG 143 (208)
T ss_pred EEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhc
Confidence 9999999877 469999997753 234556667777777754332 3456899999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 751 ~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 144 NPDLLILDEPTNGLDPDGIKELREL-ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999988875 33212257899999999999864 9999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=327.48 Aligned_cols=206 Identities=25% Similarity=0.330 Sum_probs=170.4
Q ss_pred CCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc-----CCCeEEEEcC----
Q 000553 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---- 672 (1428)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~-----~~~G~i~~~~---- 672 (1428)
....++++|+++.|+. . .+|+|+||+|++||+++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 10 ~~~~l~~~~l~~~~~~---~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYYGK---F---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEeCC---e---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 3456899999999953 2 35999999999999999999999999999999999986 5899998754
Q ss_pred -----------cEEEEcCCCCCCcccHHHHHhcCCC----CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCc
Q 000553 673 -----------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1428)
Q Consensus 673 -----------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~ 733 (1428)
.++|++|+|.+++.|++||+.++.. .++ ++..++++..++..++. +..++...+
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 156 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYS 156 (260)
T ss_pred ccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCC
Confidence 4899999999888999999987532 222 33445566666543332 234567789
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEE
Q 000553 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVK 812 (1428)
Q Consensus 734 LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~ 812 (1428)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||++++|++|+++
T Consensus 157 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL-ITE-LKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999988776 333 334689999999999886 59999999999999
Q ss_pred EecChHHHHh
Q 000553 813 WIGSSADLAV 822 (1428)
Q Consensus 813 ~~g~~~el~~ 822 (1428)
+.|+.+++..
T Consensus 235 ~~g~~~~~~~ 244 (260)
T PRK10744 235 EFGNTDTIFT 244 (260)
T ss_pred EeCCHHHHHh
Confidence 9999888753
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=323.31 Aligned_cols=199 Identities=25% Similarity=0.375 Sum_probs=164.5
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------c
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------~ 673 (1428)
++++|++++|+. . .+|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (236)
T TIGR03864 2 LEVAGLSFAYGA---R---RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75 (236)
T ss_pred EEEEeeEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhh
Confidence 578899999852 2 359999999999999999999999999999999999999999998865 3
Q ss_pred EEEEcCCCCC-CcccHHHHHhcCCC---CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 674 IAYVPQVPWI-LSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 i~y~~Q~p~l-~~~ti~~nI~~g~~---~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
++|++|++.+ ++.|++||+.++.. .+++ +..+.++..++. ...+....+||||||||++||
T Consensus 76 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred EEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHH
Confidence 8999999987 46799999986532 2222 233344444443 223556679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHHh
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
||++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 145 ral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 145 RALLHRPALLLLDEPTVGLDPASRAAIVAH-VRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999988876 33212 24789999999999998899999999999999999888754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=287.80 Aligned_cols=209 Identities=27% Similarity=0.362 Sum_probs=176.3
Q ss_pred cEEEEEEEEEECCC--CCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChH---hH
Q 000553 1191 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DL 1265 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~---~l 1265 (1428)
.|+.++++..-+.. .-.+|++|+|.|++||.|||||+||||||||+..|.|+-+|++|+|.+.|.++.+++-+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 57888887776543 33689999999999999999999999999999999999999999999999999988754 45
Q ss_pred h-cceEEEeCCccccCC-cHHHhcC-cC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000553 1266 R-GRFAVVPQSPFLFEG-SLRDNLD-PF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1339 (1428)
Q Consensus 1266 R-~~i~~VpQdp~lf~g-TIR~NLd-p~---~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1339 (1428)
| +++++|.|.-.|.+. |--||.. |. ++.+.+. +....+.++..||..++...+..|||||+||++|||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~------~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADS------RAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccH------HHHHHHHHHHhCcccccccCccccCchHHHHHHHHH
Confidence 5 579999999888765 8899974 32 2211111 112234555668888888888899999999999999
Q ss_pred HHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhhhcCEEEEEeCCeEEEe
Q 000553 1340 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1405 (1428)
Q Consensus 1340 ALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ive~ 1405 (1428)
|+.-+|+||+-||||-|||.+|-+.|-+.+-+.- .+.|.++|||+......|||++-|.+|+++|.
T Consensus 160 Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999999999999999999999999999886553 48899999999999999999999999999863
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=362.03 Aligned_cols=199 Identities=26% Similarity=0.339 Sum_probs=167.8
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC--CceEEECCeeCCCCChHhHhcceEEEeCCccccCC-c
Q 000553 1206 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC--GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-S 1282 (1428)
Q Consensus 1206 ~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~--~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lf~g-T 1282 (1428)
+.+|+|+|++++|||++||+||||||||||+++|.|+.+|. +|+|.+||.++. ...+++++||||++.+|+. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 899999999874 2456789999999999975 9
Q ss_pred HHHhcCcCC------CCChHHHHHHHHHccHHHHHHhCCC----chhhhc-CCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000553 1283 LRDNLDPFH------MNDDLKIWSVLEKCHVKEEVEAVGL----ETFVKE-SGISFSVGQRQLICLARALLKSSKVLCLD 1351 (1428)
Q Consensus 1283 IR~NLdp~~------~~~d~ei~~aL~~~~l~~~i~~lgL----dt~v~e-~G~~LSgGQrQrl~LARALL~~~~ILlLD 1351 (1428)
||||+.+.. ..++++..+. ..+.++.+|| |+.+++ ....||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999996421 1233332221 2344555555 666664 35679999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-h-hhcCEEEEEeCCeEEEecChhHHhc
Q 000553 1352 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1352 EaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~t-i-~~~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
|||++||..+...+.+.|++.. +++|||+++|+++. + ..||+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999998865 58999999999984 5 4589999999999999999999874
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=324.74 Aligned_cols=197 Identities=29% Similarity=0.360 Sum_probs=164.8
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--------cEE
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 675 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--------~i~ 675 (1428)
..++++|+++.|.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 11 ~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 45899999999853 2359999999999999999999999999999999999999999998865 489
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC-ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCC
Q 000553 676 YVPQVPWILS-GTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 753 (1428)
Q Consensus 676 y~~Q~p~l~~-~ti~~nI~~g~~~-~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~ 753 (1428)
|++|+|.++. .|++||+.++... .+++..++++..++.... .....+||||||||++||||++.+|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999998876 6999999886321 234556666666665432 34556999999999999999999999
Q ss_pred EEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChH
Q 000553 754 IYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 754 illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 818 (1428)
++||||||++||+.+.+.+.+. +.... ..++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDL-IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999988776 33211 23789999999999875 59999999999999877643
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=322.98 Aligned_cols=202 Identities=28% Similarity=0.402 Sum_probs=164.6
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+.... ..++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGG--KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCC--ceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 578999999864210 11459999999999999999999999999999999999999999998764
Q ss_pred ---cEEEEcCCCCCCc-ccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
.++|++|+|.++. .|++||+.++.. .+. ++..+.++..++...+ .....+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr 148 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKA-----------DAYPAQLSGGQKQR 148 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hcChhhCCHHHHHH
Confidence 3899999999886 599999987532 222 2334455555554322 33456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~e 819 (1428)
++||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILAL-LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999988876 332122 37899999999999865 99999999999999999887
Q ss_pred HH
Q 000553 820 LA 821 (1428)
Q Consensus 820 l~ 821 (1428)
+.
T Consensus 228 ~~ 229 (233)
T cd03258 228 VF 229 (233)
T ss_pred Hh
Confidence 64
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=329.95 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=171.1
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|++++|+...+...+++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 47899999999743210113469999999999999999999999999999999999999999998864
Q ss_pred --cEEEEcCCCC--CCcccHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 --SIAYVPQVPW--ILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 --~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
.++|++|+|. +++.|+.||+.|+.. .+ +++.+++++.++|...... ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 3899999985 666799999998632 22 2345667777777654433 345899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el 820 (1428)
++||||++.+|+++||||||++||+.+.+.+.+. +..... ++.|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT-IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988875 433112 37899999999999888999999999999999999988
Q ss_pred Hh
Q 000553 821 AV 822 (1428)
Q Consensus 821 ~~ 822 (1428)
..
T Consensus 232 ~~ 233 (280)
T PRK13633 232 FK 233 (280)
T ss_pred hc
Confidence 64
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=330.69 Aligned_cols=203 Identities=28% Similarity=0.384 Sum_probs=169.8
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCC---eEEEEcC--------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASG-------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~---G~i~~~~-------- 672 (1428)
..++++|+++.|+... ..+++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~~----~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK----KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCCC----ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 4689999999996321 235999999999999999999999999999999999999987 8998765
Q ss_pred -----cEEEEcCCCC--CCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHH
Q 000553 673 -----SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1428)
Q Consensus 673 -----~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQ 738 (1428)
.++|++|+|+ +++.|++|||.|+.. .++ ++..++++.++|+.... ....+|||||
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~ 148 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQ 148 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHH
Confidence 4899999994 567899999988632 222 33556677777764433 3446999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhcCCEEEEEeCCeEEEecCh
Q 000553 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSS 817 (1428)
Q Consensus 739 kqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~ 817 (1428)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+..||++++|++|++++.|++
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKL-IRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999988876 333122 37899999999999988999999999999999999
Q ss_pred HHHHh
Q 000553 818 ADLAV 822 (1428)
Q Consensus 818 ~el~~ 822 (1428)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88754
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=315.95 Aligned_cols=192 Identities=20% Similarity=0.273 Sum_probs=159.8
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 478999999964 46999999999999999999999999999999999999999999999999998765 456789999
Q ss_pred EeCCccccC-CcHHHhcCcCCC-CC--hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000553 1272 VPQSPFLFE-GSLRDNLDPFHM-ND--DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1272 VpQdp~lf~-gTIR~NLdp~~~-~~--d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~I 1347 (1428)
+||++.+|+ .|+++|+..... .. ++++.++++..++ +........+||+|||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l---------~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGL---------TGFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCC---------HHHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999998887 599999864321 11 2234455555544 4334444567999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhhhhcCEEEE
Q 000553 1348 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILI 1396 (1428)
Q Consensus 1348 LlLDEaTS~lD~~te~~Iq~~i~~~-~~~~TvI~IaHrl~ti~~~DrI~V 1396 (1428)
|||||||++||..+.+.+.+.|++. .++.|+|+++|+...+. ||+++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999875 35789999999985543 577654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=338.69 Aligned_cols=214 Identities=21% Similarity=0.272 Sum_probs=173.3
Q ss_pred cEEEEEEEEEECCCC-CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcce
Q 000553 1191 LIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~-~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1269 (1428)
.++++|++++|+.+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999997542 4699999999999999999999999999999999999999999999999762
Q ss_pred EEEeCCccccC-CcHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000553 1270 AVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1270 ~~VpQdp~lf~-gTIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~ 1345 (1428)
++++.+.+++ .|+++|+.... ..++++..+. ..+.++.+|++.........||||||||++|||||+.+|
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~-----i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI-----IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 2333444444 49999986432 2233332221 122333346665566667789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1423 (1428)
Q Consensus 1346 ~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~ 1423 (1428)
++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..+-. .|.+++
T Consensus 163 ~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~-~~~~~~ 241 (549)
T PRK13545 163 DILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD-EFLKKY 241 (549)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH-HHHHHH
Confidence 9999999999999999999999998764 47899999999999976 89999999999999999999987533 455444
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=319.64 Aligned_cols=192 Identities=30% Similarity=0.426 Sum_probs=157.8
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------cE
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~i 674 (1428)
++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 i~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i 74 (213)
T cd03301 1 VELENVTKRFGN---V---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74 (213)
T ss_pred CEEEeeEEEECC---e---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceE
Confidence 357889998853 1 359999999999999999999999999999999999999999999865 38
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC---CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHH
Q 000553 675 AYVPQVPWILS-GTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1428)
Q Consensus 675 ~y~~Q~p~l~~-~ti~~nI~~g~~---~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalAR 746 (1428)
+|++|++.++. .|++||+.++.. .+++ +..+.++..+++... .....+||||||||++|||
T Consensus 75 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~lar 143 (213)
T cd03301 75 AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVALGR 143 (213)
T ss_pred EEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHHHHH
Confidence 99999999885 599999987522 2222 334455555554332 3445689999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 747 aly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
|++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAE-LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999988876 332122 37899999999998765 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=320.49 Aligned_cols=198 Identities=27% Similarity=0.426 Sum_probs=161.3
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+. . ++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK---S---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC---e---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 357889988853 2 359999999999999999999999999999999999999999998765
Q ss_pred -cEEEEcCCCCCCcc-cHHHHHhcCCCCC--h---HHHHHHHHHh-cchHHHhcccCCCcccccCCCCccchHHHHHHHH
Q 000553 673 -SIAYVPQVPWILSG-TIRDNILFGKNYD--P---QSYSETLKAC-TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~~~--~---~~~~~v~~~c-~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRval 744 (1428)
.++|++|++.++.. |++||+.++.... . ++..++++.. .+. .....+..+||||||||++|
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-----------~~~~~~~~~LS~G~~qrv~l 143 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-----------ERRKQLAGTLSGGEQQMLAI 143 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-----------hhhhCchhhCCHHHHHHHHH
Confidence 38999999988876 9999998764321 1 1222333332 121 12345667899999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHH
Q 000553 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 745 ARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
|||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999988876 33312257899999999998755 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=308.47 Aligned_cols=166 Identities=33% Similarity=0.550 Sum_probs=148.8
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------c
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------~ 673 (1428)
++++|+++.|+... .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQE----QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCCC----ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 36789999986421 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCcccHHHHHhcCCCCChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCC
Q 000553 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 753 (1428)
Q Consensus 674 i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~ 753 (1428)
++|++|+|++++.|++||| ..+||||||||++||||++.+|+
T Consensus 77 i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 77 ISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999998 45899999999999999999999
Q ss_pred EEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhcCCEEEEEeCCeEEEec
Q 000553 754 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 754 illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g 815 (1428)
++||||||++||+.+.+.+++. +.. +.+++|+|++||+.+.++.||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSL-IFE-VLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999988876 433 34578999999999999999999999999998654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=333.81 Aligned_cols=202 Identities=26% Similarity=0.392 Sum_probs=166.4
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|+. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 46899999999853 2359999999999999999999999999999999999999999999865
Q ss_pred -cEEEEcCCCCCCc-ccHHHHHhc-CC--CCChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHH
Q 000553 673 -SIAYVPQVPWILS-GTIRDNILF-GK--NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~-~ti~~nI~~-g~--~~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 743 (1428)
.+||++|++.++. .|++||+.+ +. ..+.+ +.+++++.+++... ......+||||||||++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 145 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADVRVALLSGGMKRRLT 145 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCchhhCCHHHHHHHH
Confidence 4999999998875 599999974 22 12222 23344555554322 23344689999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHHh
Q 000553 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 744 lARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
||||++.+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999988876 33212357899999999999864 99999999999999999999865
Q ss_pred c
Q 000553 823 S 823 (1428)
Q Consensus 823 ~ 823 (1428)
.
T Consensus 225 ~ 225 (303)
T TIGR01288 225 E 225 (303)
T ss_pred h
Confidence 3
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=331.26 Aligned_cols=206 Identities=25% Similarity=0.397 Sum_probs=167.8
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|..... ....+|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4688999999963211 012469999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCC--CCCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHH
Q 000553 673 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1428)
Q Consensus 673 -----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQ 738 (1428)
.|+|++|+| .+++.|++|||.++.. .+. ++.+++++.++|+.+. ......+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq 150 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQ 150 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHH
Confidence 389999998 5777899999987531 222 2345556666664322 234456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecCh
Q 000553 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817 (1428)
Q Consensus 739 kqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~ 817 (1428)
|||++||||+..+|+++||||||++||+...+.+.+. +.....++.|+|++||+++.+. .||++++|++|++++.|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~-l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL-FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999998888775 4331234789999999999876 5999999999999999998
Q ss_pred HHHHh
Q 000553 818 ADLAV 822 (1428)
Q Consensus 818 ~el~~ 822 (1428)
+++..
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 88753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=318.94 Aligned_cols=188 Identities=32% Similarity=0.436 Sum_probs=154.9
Q ss_pred EEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC--------cEEEEcC
Q 000553 608 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAYVPQ 679 (1428)
Q Consensus 608 ~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~--------~i~y~~Q 679 (1428)
++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 2 ~~~l~~~~~~---~---~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLTVSYGG---H---PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQ 75 (213)
T ss_pred cccceeEECC---E---EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecc
Confidence 5678888753 1 359999999999999999999999999999999999999999999987 3999999
Q ss_pred CCCC---CcccHHHHHhcCCCC-----------ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 680 VPWI---LSGTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 680 ~p~l---~~~ti~~nI~~g~~~-----------~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
+|.+ ++.|++||+.++... ++++.+++++.++++.... ....+||||||||++||
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 144 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLA 144 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHH
Confidence 9976 557999999875321 1234566777777764433 23458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEe
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 814 (1428)
||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++| +++.
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYEL-LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999988876 33212257899999999999865 9999999886 5443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=317.24 Aligned_cols=190 Identities=27% Similarity=0.381 Sum_probs=158.2
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------cE
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~i 674 (1428)
++++|+++.|+.. ..|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 i~~~~l~~~~~~~--------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i 72 (211)
T cd03298 1 VRLDKIRFSYGEQ--------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV 72 (211)
T ss_pred CEEEeEEEEeCCE--------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE
Confidence 3678899988521 2399999999999999999999999999999999999999999876 38
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCC-------ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHH
Q 000553 675 AYVPQVPWILSG-TIRDNILFGKNY-------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1428)
Q Consensus 675 ~y~~Q~p~l~~~-ti~~nI~~g~~~-------~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalAR 746 (1428)
+|++|+|.++.+ |++||+.++... ++++..++++.++++...... ..+||||||||++|||
T Consensus 73 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~ 141 (211)
T cd03298 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALAR 141 (211)
T ss_pred EEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHH
Confidence 999999998875 999999875321 233556677777776544433 3489999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 747 aly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
|++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDL-VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999988876 33211 237899999999999865 9999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=319.77 Aligned_cols=196 Identities=21% Similarity=0.337 Sum_probs=160.4
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------c
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------~ 673 (1428)
++++|+++.|+... ...++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 57899999996421 112469999999999999999999999999999999999999999998875 4
Q ss_pred EEEEcCCCCCCcc-cHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 674 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
++|++|+|.++.. |++||+.+... .+ .++..+.++..++... ......+||||||||++||
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHH
Confidence 8999999998875 99999976421 12 2344555666655432 2345668999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+.+.+.. ||++++|++|++.+.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREF-IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999888876 33212347899999999998764 9999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=325.87 Aligned_cols=203 Identities=26% Similarity=0.321 Sum_probs=167.7
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcC---ccC--CCeEEEEcC-------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE---MML--THGSIHASG------- 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~---~~~--~~G~i~~~~------- 672 (1428)
.++++|+++.|+. ..+|+|+||++++||+++|+|+||||||||+++|+|. .++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 5789999999853 2359999999999999999999999999999999996 454 589998764
Q ss_pred --------cEEEEcCCCCCCcccHHHHHhcCCC----CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 673 --------SIAYVPQVPWILSGTIRDNILFGKN----YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
.++|++|+|.+++.|++||+.++.. .+ +++.+++++.+++..++. +.....+.+|||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 149 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSG 149 (250)
T ss_pred ccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCH
Confidence 3899999999998899999987532 11 234455666666643332 233566779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEec
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g 815 (1428)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL-IHE-LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999988876 433 345789999999999885 59999999999999999
Q ss_pred ChHHHHh
Q 000553 816 SSADLAV 822 (1428)
Q Consensus 816 ~~~el~~ 822 (1428)
+++++..
T Consensus 228 ~~~~~~~ 234 (250)
T PRK14245 228 DTKKIFT 234 (250)
T ss_pred CHHHHhc
Confidence 9998854
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=341.16 Aligned_cols=200 Identities=26% Similarity=0.402 Sum_probs=168.1
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|++++|+. ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 3 ~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 4789999999863 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCCC-CcccHHHHHhcCCC-----C------ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHH
Q 000553 673 -SIAYVPQVPWI-LSGTIRDNILFGKN-----Y------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1428)
Q Consensus 673 -~i~y~~Q~p~l-~~~ti~~nI~~g~~-----~------~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQk 739 (1428)
++|||+|++.+ ++.|++||+.++.. + +.++.+++++..++.... .....+||||||
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGer 145 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGER 145 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHH
Confidence 49999999987 56799999988741 1 123455666666665322 234568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChH
Q 000553 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 740 qRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 818 (1428)
||++|||||+++|+++||||||++||+.....+++. +......++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 146 QRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l-L~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ 224 (402)
T PRK09536 146 QRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL-VRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA 224 (402)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999998888775 3321224789999999999985 59999999999999999999
Q ss_pred HHHh
Q 000553 819 DLAV 822 (1428)
Q Consensus 819 el~~ 822 (1428)
++..
T Consensus 225 ev~~ 228 (402)
T PRK09536 225 DVLT 228 (402)
T ss_pred HHhC
Confidence 8754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=324.49 Aligned_cols=200 Identities=25% Similarity=0.387 Sum_probs=163.2
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------c
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-------------~ 673 (1428)
+++|+++.|+.. ..+|+|+||++++|++++|+||||||||||+++|.|..+|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (242)
T cd03295 2 EFENVTKRYGGG-----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK 76 (242)
T ss_pred EEEEEEEEeCCc-----ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcc
Confidence 578899988631 2359999999999999999999999999999999999999999998865 4
Q ss_pred EEEEcCCCCCCc-ccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 674 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
++|++|+|.++. .|++||+.++.. .+. ++..++++..++.. .......+.+||||||||++||
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred eEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHH
Confidence 899999998886 599999987532 221 23344455554432 0123456679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHHH
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
||++.+|++++|||||++||+.+.+.+.+. +..... +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 148 ral~~~p~llllDEPt~~LD~~~~~~l~~~-L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEE-FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999998888776 332122 3789999999999865 59999999999999999988774
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=326.43 Aligned_cols=205 Identities=23% Similarity=0.343 Sum_probs=169.9
Q ss_pred CCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC-----CCeEEEEcC----
Q 000553 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG---- 672 (1428)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~-----~~G~i~~~~---- 672 (1428)
.+..++++|+++.|+. . .+|+|+||+|++|++++|+|+||||||||+++|+|.++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---K---QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEECC---E---EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 3457999999999963 2 359999999999999999999999999999999999974 899998765
Q ss_pred -----------cEEEEcCCCCCCcccHHHHHhcCCC---C--C----hHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 673 -----------SIAYVPQVPWILSGTIRDNILFGKN---Y--D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 673 -----------~i~y~~Q~p~l~~~ti~~nI~~g~~---~--~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
.++|++|+|.+++.|++||+.++.. . + .++..++++.+++..++. +..+..+.
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 162 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGT 162 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 3899999999998899999987531 1 1 223455666666644332 22355677
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeE
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i 811 (1428)
+||||||||++||||++.+|+++||||||++||+...+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i 240 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEEL-IDE-LRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL 240 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH-HHH-HhcCCeEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999988776 433 3346899999999999854 999999999999
Q ss_pred EEecChHHHH
Q 000553 812 KWIGSSADLA 821 (1428)
Q Consensus 812 ~~~g~~~el~ 821 (1428)
++.|+.+++.
T Consensus 241 ~~~g~~~~~~ 250 (267)
T PRK14235 241 VEVGDTEKMF 250 (267)
T ss_pred EEeCCHHHHH
Confidence 9999988875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=326.25 Aligned_cols=207 Identities=26% Similarity=0.331 Sum_probs=172.2
Q ss_pred CCCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc-----CCCeEEEEcC---
Q 000553 601 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG--- 672 (1428)
Q Consensus 601 ~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~-----~~~G~i~~~~--- 672 (1428)
.....++++|+++.|+. . .+|+|+||++++||+++|+|+||||||||+++|.|+++ |++|+|.++|
T Consensus 16 ~~~~~l~~~nl~~~~~~---~---~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 16 EEEIALSTKDLHVYYGK---K---EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CCCeEEEEeeEEEEECC---e---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 34457999999999952 2 35999999999999999999999999999999999986 5899998764
Q ss_pred ------------cEEEEcCCCCCCcccHHHHHhcCCC----CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCC
Q 000553 673 ------------SIAYVPQVPWILSGTIRDNILFGKN----YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1428)
Q Consensus 673 ------------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~ 732 (1428)
.|+|++|++.++..|++|||.++.. .+ +++..++++.+++..++. +..+..+.
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~ 162 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSAL 162 (267)
T ss_pred ccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcc
Confidence 3899999999998999999987532 12 233455666776654432 23456778
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeE
Q 000553 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQV 811 (1428)
Q Consensus 733 ~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i 811 (1428)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.++.|+|++||+++.+. .||++++|++|++
T Consensus 163 ~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET-MFE-LKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999888876 333 345689999999999875 5999999999999
Q ss_pred EEecChHHHHh
Q 000553 812 KWIGSSADLAV 822 (1428)
Q Consensus 812 ~~~g~~~el~~ 822 (1428)
++.|+.+++..
T Consensus 241 ~~~g~~~~~~~ 251 (267)
T PRK14237 241 IEYDKTRNIFT 251 (267)
T ss_pred EEeCCHHHHhc
Confidence 99999988753
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=325.97 Aligned_cols=206 Identities=25% Similarity=0.351 Sum_probs=168.4
Q ss_pred CCceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc-----CCCeEEEEcC----
Q 000553 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---- 672 (1428)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~-----~~~G~i~~~~---- 672 (1428)
.+..++++|+++.|+. ..+|+|+||+|++|++++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 10 ~~~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 10 KNIIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CCceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3457899999999863 135999999999999999999999999999999999987 5899998764
Q ss_pred -----------cEEEEcCCCCCCcccHHHHHhcCCCC---C---hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccc
Q 000553 673 -----------SIAYVPQVPWILSGTIRDNILFGKNY---D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1428)
Q Consensus 673 -----------~i~y~~Q~p~l~~~ti~~nI~~g~~~---~---~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LS 735 (1428)
.++|++|+|.++..|++||+.++... + +++..++++.+++...+. +.......+||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 156 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLS 156 (269)
T ss_pred cccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCC
Confidence 38999999999888999999986432 1 223344555555432221 23455677999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeC------
Q 000553 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDK------ 808 (1428)
Q Consensus 736 GGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~------ 808 (1428)
||||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+. .||++++|++
T Consensus 157 ~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEET-MHE-LKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccc
Confidence 9999999999999999999999999999999999988876 333 344689999999999876 5999999996
Q ss_pred -----CeEEEecChHHHHh
Q 000553 809 -----GQVKWIGSSADLAV 822 (1428)
Q Consensus 809 -----G~i~~~g~~~el~~ 822 (1428)
|++++.|+.+++..
T Consensus 235 ~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 235 SGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred cccccceEEEeCCHHHHHh
Confidence 67899999888754
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=321.94 Aligned_cols=198 Identities=26% Similarity=0.372 Sum_probs=162.3
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYGK---R---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeCC---E---EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 357889998853 2 359999999999999999999999999999999999999999998764
Q ss_pred -cEEEEcCCCCCCcc-cHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHH
Q 000553 673 -SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 743 (1428)
.++|++|++.++.+ |++||+.++.+ .++ ++.++.++..++.. .......+||||||||++
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~ 143 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVE 143 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHH
Confidence 38999999988876 99999987532 121 22334444444432 234556799999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHH
Q 000553 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 744 lARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
||||+..+|+++||||||++||+.+.+.+.+. +......++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 144 la~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 144 IARALATNPKFLLLDEPFAGVDPIAVQDIQKI-IKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 99999999999999999999999999988875 33212347899999999987654 9999999999999999888764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=329.04 Aligned_cols=201 Identities=23% Similarity=0.360 Sum_probs=168.7
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+.+ ..+|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 5 ILKVEELNYNYSDG-----THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred eEEEEeEEEEeCCC-----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 58999999999521 2359999999999999999999999999999999999999999998875
Q ss_pred ---cEEEEcCCC--CCCcccHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHH
Q 000553 673 ---SIAYVPQVP--WILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1428)
Q Consensus 673 ---~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkq 740 (1428)
.++|++|+| .+++.|++||+.++.. +. .++..++++.++|... ....+.+|||||||
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~q 148 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKK 148 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHH
Confidence 389999998 5778899999987532 22 2345566666666532 23456799999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChH
Q 000553 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 741 RvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 818 (1428)
|++|||||+.+|+++||||||++||+...+.+.+. +..... .++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL-LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 227 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999988775 332122 2789999999999987 59999999999999999999
Q ss_pred HHHh
Q 000553 819 DLAV 822 (1428)
Q Consensus 819 el~~ 822 (1428)
++..
T Consensus 228 ~~~~ 231 (283)
T PRK13636 228 EVFA 231 (283)
T ss_pred HHhc
Confidence 8754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=317.10 Aligned_cols=190 Identities=24% Similarity=0.349 Sum_probs=158.2
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------c
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------~ 673 (1428)
++++|+++.|+. . .+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~---~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK---K---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC---E---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 367899998853 1 3599999999999 9999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCcc-cHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 674 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
++|++|+|.++.. |++||+.+... .+ +++.+++++.+++....+ ....+||||||||++||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la 142 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIA 142 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHH
Confidence 8999999998876 99999986421 12 234456666666654332 23458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEec
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g 815 (1428)
||++++|+++||||||++||+.+.+++.+. +.. ..+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 143 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNL-LSE-LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999988876 333 334589999999999986 59999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=360.47 Aligned_cols=215 Identities=28% Similarity=0.448 Sum_probs=175.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEEC----------------
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVD---------------- 1253 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~--~~~~G~I~ID---------------- 1253 (1428)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999963 46999999999999999999999999999999999996 7999999997
Q ss_pred -------CeeCC-------CCC---hHhHhcceEEEeCC-ccccCC-cHHHhcCcCC---CCChHHHHHHHHHccHHHHH
Q 000553 1254 -------GLNII-------NTP---VRDLRGRFAVVPQS-PFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEV 1311 (1428)
Q Consensus 1254 -------G~di~-------~i~---~~~lR~~i~~VpQd-p~lf~g-TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i 1311 (1428)
|.++. ..+ ...+|++++++||+ +.+|+. |+++|+.+.. ..+.++.. ....+.+
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l 153 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDLI 153 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHH
Confidence 33331 111 23467889999998 567764 9999985321 12222211 1233445
Q ss_pred HhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhhh
Q 000553 1312 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL 1389 (1428)
Q Consensus 1312 ~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~--~~~TvI~IaHrl~ti~ 1389 (1428)
+.+|++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.
T Consensus 154 ~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 55577666666677899999999999999999999999999999999999999999998864 3789999999999997
Q ss_pred h-cCEEEEEeCCeEEEecChhHHhc
Q 000553 1390 N-MDEILILDHGHLVEQGNPQTLLQ 1413 (1428)
Q Consensus 1390 ~-~DrI~Vl~~G~ive~g~p~eLl~ 1413 (1428)
. ||+|++|++|++++.|+++++..
T Consensus 234 ~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HhcCEEEEEeCCEEeeecCHHHHHH
Confidence 6 89999999999999999998865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=319.35 Aligned_cols=193 Identities=26% Similarity=0.381 Sum_probs=157.4
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+... ...++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 57899999986421 112469999999999999999999999999999999999999999998764
Q ss_pred ----cEEEEcCCCCCCc-ccHHHHHhcCC---CCC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHH
Q 000553 673 ----SIAYVPQVPWILS-GTIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1428)
Q Consensus 673 ----~i~y~~Q~p~l~~-~ti~~nI~~g~---~~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkq 740 (1428)
.++|++|+|.++. .|++||+.++. .++ +++..+.++.++++... .....+|||||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~q 148 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQ 148 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHH
Confidence 3899999998885 59999998742 122 22344555555554332 3345689999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhcCCEEEEEeCCeEE
Q 000553 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1428)
Q Consensus 741 RvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 812 (1428)
|++||||++.+|+++||||||++||+++.+.+.+. +.... ..++|+|++||+++.+..+|+|++|++|+++
T Consensus 149 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL-MLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999988876 33211 2378999999999999889999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=326.31 Aligned_cols=203 Identities=27% Similarity=0.414 Sum_probs=167.8
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|+.. + .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~~-~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS-E---NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC-C---ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 468999999999632 1 2359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCC--CCcccHHHHHhcCCC---CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 --SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 --~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
.++||+|+|. +++.|++|||.++.. ++.+ +..++++..++...+ .....+||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr 150 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQR 150 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHH
Confidence 3899999984 557799999987532 3333 234556666665433 33456999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC-CceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~-~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el 820 (1428)
++||||++.+|+++||||||++||+.+.+.+++. +.....+ ++|+|++||+++.+..||++++|++|++.+.|+.+++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKI-MVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988876 3321223 4899999999999888999999999999999998876
Q ss_pred Hh
Q 000553 821 AV 822 (1428)
Q Consensus 821 ~~ 822 (1428)
..
T Consensus 230 ~~ 231 (271)
T PRK13632 230 LN 231 (271)
T ss_pred hc
Confidence 53
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=330.55 Aligned_cols=207 Identities=29% Similarity=0.405 Sum_probs=164.8
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|+.... ...++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 45899999999964311 112369999999999999999999999999999999999999999998654
Q ss_pred -------cEEEEcCCCC--CCcccHHHHHhcCCC---CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 673 -------SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 673 -------~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
.|+|++|+|+ +++.|++|||.|+.. .+.+ +..+.++..+|..+ ..+....+|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCH
Confidence 3899999984 667899999988632 2221 22233343333211 12456679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeEEEe
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWI 814 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~ 814 (1428)
|||||++||||++.+|+++||||||++||+.+.+.+++. +..... .++|+|++||+++.+. .||+|++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL-FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999988775 332112 3789999999999875 5999999999999999
Q ss_pred cChHHHHh
Q 000553 815 GSSADLAV 822 (1428)
Q Consensus 815 g~~~el~~ 822 (1428)
|+++++..
T Consensus 233 g~~~~~~~ 240 (289)
T PRK13645 233 GSPFEIFS 240 (289)
T ss_pred CCHHHHhc
Confidence 99888753
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=326.50 Aligned_cols=205 Identities=25% Similarity=0.308 Sum_probs=166.5
Q ss_pred CceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc-----CCCeEEEEcC-----
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG----- 672 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~-----~~~G~i~~~~----- 672 (1428)
+..++++|+++.|+. . .+|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~---~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYGE---K---RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeCC---c---eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 346899999999963 2 35999999999999999999999999999999999864 6899997754
Q ss_pred ----------cEEEEcCCCCCCcccHHHHHhcCCCCC--------hHHHHHHHHHhcchHHHhcccCCCcccccCCCCcc
Q 000553 673 ----------SIAYVPQVPWILSGTIRDNILFGKNYD--------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734 (1428)
Q Consensus 673 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~~~--------~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~L 734 (1428)
.++|++|+|.++++|++||+.++..+. +++..++++.+++..++. ...+..+.+|
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 165 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSL 165 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccC
Confidence 489999999999899999998753211 122333444444432221 2345667899
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEE
Q 000553 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKW 813 (1428)
Q Consensus 735 SGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~ 813 (1428)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 166 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEEL-ITE-LKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHH-HHH-HhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988775 333 334689999999999876 599999999999999
Q ss_pred ecChHHHHh
Q 000553 814 IGSSADLAV 822 (1428)
Q Consensus 814 ~g~~~el~~ 822 (1428)
.|+.+++..
T Consensus 244 ~~~~~~~~~ 252 (268)
T PRK14248 244 YDQTEQIFT 252 (268)
T ss_pred eCCHHHHHh
Confidence 999888753
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=324.24 Aligned_cols=204 Identities=23% Similarity=0.338 Sum_probs=166.9
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc--C---CCeEEEEcC------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM--L---THGSIHASG------ 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~--~---~~G~i~~~~------ 672 (1428)
..++++|+++.|+. . .+|+|+||+|++||+++|+|+||||||||+++|+|.++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 11 EVYQINGMNLWYGQ---H---HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred ceEEEeeEEEEECC---e---eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 46899999999853 2 35999999999999999999999999999999999987 3 589998754
Q ss_pred ---------cEEEEcCCCCCCcccHHHHHhcCCCC----ChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccc
Q 000553 673 ---------SIAYVPQVPWILSGTIRDNILFGKNY----DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1428)
Q Consensus 673 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LS 735 (1428)
.++|++|+|.+++.|++||+.++... +++ +..++++..++.+.+. +.....+.+||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS 157 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLS 157 (259)
T ss_pred ccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCC
Confidence 38999999999989999999876321 222 2333445555543221 22355677999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEe
Q 000553 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWI 814 (1428)
Q Consensus 736 GGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~ 814 (1428)
||||||++||||++.+|+++||||||++||+++.+.+.+. +.. +.+++|+|++||+++.+. .||++++|++|++++.
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL-ILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998888775 433 344689999999999876 5999999999999999
Q ss_pred cChHHHHh
Q 000553 815 GSSADLAV 822 (1428)
Q Consensus 815 g~~~el~~ 822 (1428)
|+++++..
T Consensus 236 g~~~~~~~ 243 (259)
T PRK14274 236 NDTNKMFS 243 (259)
T ss_pred CCHHHHhh
Confidence 99998754
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=318.64 Aligned_cols=197 Identities=25% Similarity=0.290 Sum_probs=157.6
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
+.++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... .....
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 678888888864 4699999999999999999999999999999999999999999999999986421 11111
Q ss_pred EeCCccccCCcHHHhcCcCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000553 1272 VPQSPFLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348 (1428)
Q Consensus 1272 VpQdp~lf~gTIR~NLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~IL 1348 (1428)
+..+.|+++|+..... .+.++..+ ...+.++.+|++.........||+|||||++||||++++|++|
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 164 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDE-----KIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDIL 164 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2234699999864321 12222111 1223333346655555566689999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEec
Q 000553 1349 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406 (1428)
Q Consensus 1349 lLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g 1406 (1428)
||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 165 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999998764 46899999999999876 8999999999998865
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=319.55 Aligned_cols=193 Identities=25% Similarity=0.391 Sum_probs=159.3
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEEEeCCccc---cCCcHHHhcCcC
Q 000553 1214 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL---FEGSLRDNLDPF 1290 (1428)
Q Consensus 1214 ~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l---f~gTIR~NLdp~ 1290 (1428)
|+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..|++++|+||+|.+ |+.|+++|+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357789999999976 457999998543
Q ss_pred CC--------CC---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCCH
Q 000553 1291 HM--------ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359 (1428)
Q Consensus 1291 ~~--------~~---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD~ 1359 (1428)
.. .. ++++.++++. +|++.........||+|||||++|||||+++|++|||||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRR---------VGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHH---------hCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 10 11 1223333333 3555444555567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecChhHHhccCCcHHHHHH
Q 000553 1360 QTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1423 (1428)
Q Consensus 1360 ~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~p~eLl~~~~s~f~~l~ 1423 (1428)
.+.+.+.+.|++.. ++.|+|+++|+++.+.. ||+|+++ +|++++.|+++++.++. ...+++
T Consensus 147 ~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~--~~~~~~ 209 (223)
T TIGR03771 147 PTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA--PWMTTF 209 (223)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH--HHHHHh
Confidence 99999999998764 47899999999998876 8999999 79999999999997642 344443
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=325.55 Aligned_cols=201 Identities=24% Similarity=0.344 Sum_probs=165.3
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN---R---CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 46899999999852 2 359999999999999999999999999999999999999999998764
Q ss_pred -----cEEEEcCCCCCCcc-cHHHHHhcCC----CCChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHH
Q 000553 673 -----SIAYVPQVPWILSG-TIRDNILFGK----NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1428)
Q Consensus 673 -----~i~y~~Q~p~l~~~-ti~~nI~~g~----~~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQ 738 (1428)
.++|++|++.+++. |++||+.++. ..+.+ +..+.++..++... ......+|||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq 148 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGM 148 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHH
Confidence 38999999998876 9999998642 12222 23344555555422 223456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhc-CCEEEEEeCCeEEEecC
Q 000553 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 739 kqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 816 (1428)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL-ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999988775 332112 37899999999998865 99999999999999999
Q ss_pred hHHHHh
Q 000553 817 SADLAV 822 (1428)
Q Consensus 817 ~~el~~ 822 (1428)
++++..
T Consensus 228 ~~~~~~ 233 (269)
T PRK11831 228 AQALQA 233 (269)
T ss_pred HHHHhc
Confidence 988754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=324.99 Aligned_cols=204 Identities=25% Similarity=0.345 Sum_probs=167.2
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC-----CCeEEEEcC------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~-----~~G~i~~~~------ 672 (1428)
..++++|+++.|+. . .+|+|+||+|++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 11 PQIKVENLNLWYGE---K---QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred eeEEEeeeEEEeCC---e---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 46899999998852 2 359999999999999999999999999999999999875 799998754
Q ss_pred ---------cEEEEcCCCCCCcccHHHHHhcCCC---CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 673 ---------SIAYVPQVPWILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 673 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
.++|++|++.+++.|++||+.++.. .+.+ +..++++.+++..++. ........+|||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 157 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSG 157 (258)
T ss_pred cchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCH
Confidence 3899999999988999999987531 2222 2344555555532221 223456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL-IMN-LKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHH-HhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988775 333 3347899999999998864 9999999999999999
Q ss_pred ChHHHHh
Q 000553 816 SSADLAV 822 (1428)
Q Consensus 816 ~~~el~~ 822 (1428)
+++++..
T Consensus 236 ~~~~~~~ 242 (258)
T PRK14268 236 QTRQIFH 242 (258)
T ss_pred CHHHHhc
Confidence 9988753
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=335.26 Aligned_cols=203 Identities=26% Similarity=0.373 Sum_probs=167.8
Q ss_pred CceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----------
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---------- 672 (1428)
...++++|++..|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 39 ~~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 356999999999963 2359999999999999999999999999999999999999999999876
Q ss_pred --cEEEEcCCCCCC-cccHHHHHhc-CCC--CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 --SIAYVPQVPWIL-SGTIRDNILF-GKN--YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 --~i~y~~Q~p~l~-~~ti~~nI~~-g~~--~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.||||+|++.++ +.|++||+.+ +.. .+. ++.+++++.++|... ...+..+||||||||+
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv 181 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRL 181 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHH
Confidence 499999999886 4599999975 321 121 223344444444321 2334458999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHH
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
+||||+.++|+++||||||++||+.+.+.+.+. +......|+|+|++||+++.+.. ||+|++|++|+++..|+.+++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~-l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999988886 33312357899999999999865 9999999999999999999986
Q ss_pred hc
Q 000553 822 VS 823 (1428)
Q Consensus 822 ~~ 823 (1428)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 54
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=336.27 Aligned_cols=210 Identities=27% Similarity=0.382 Sum_probs=176.1
Q ss_pred cEEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCh-HhHhcce
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i 1269 (1428)
.++++|++++|++- ++|+||||+++|||..|++|.||||||||++.|.|.|+|++|+|.+||....-.++ +..+..|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 58999999999754 69999999999999999999999999999999999999999999999999985554 5556679
Q ss_pred EEEeCCccccCC-cHHHhcCcCCCCC-------hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHMND-------DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341 (1428)
Q Consensus 1270 ~~VpQdp~lf~g-TIR~NLdp~~~~~-------d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1341 (1428)
++|.||+.|++. ||.|||-.+.+.. ..++.+. ..+.++.+|++......-.+||.||||.+.||||+
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~-----A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR-----ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHH-----HHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHH
Confidence 999999999987 9999996554322 2222221 22344445443223333347999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh-cCEEEEEeCCeEEEecC
Q 000553 1342 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1407 (1428)
Q Consensus 1342 L~~~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ive~g~ 1407 (1428)
..+++|||||||||+|+....+.+.+.|++.. +|.++|+|||||+.+.. ||||.||.||+++..+.
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999988888888998875 69999999999999987 89999999999998776
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=324.65 Aligned_cols=203 Identities=26% Similarity=0.346 Sum_probs=166.9
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc-----CCCeEEEEcC-------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------- 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~-----~~~G~i~~~~------- 672 (1428)
.++++|+++.|+. . .+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSYGN---Y---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEECC---e---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 4789999999853 2 35999999999999999999999999999999999986 4799998764
Q ss_pred --------cEEEEcCCCCCCcccHHHHHhcCCCC----Ch----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
.++|++|++.+++.|++||+.++... ++ ++..++++.+++..+.. ...+..+.+|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 150 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSG 150 (251)
T ss_pred chHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCH
Confidence 38999999999989999999875321 11 23445555555532111 123456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
|||||++||||++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++.+.|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET-LME-LKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHH-HHH-HHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988776 433 3446899999999999765 9999999999999999
Q ss_pred ChHHHHh
Q 000553 816 SSADLAV 822 (1428)
Q Consensus 816 ~~~el~~ 822 (1428)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14251 229 PTEEMFI 235 (251)
T ss_pred CHHHHHh
Confidence 9888753
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=312.40 Aligned_cols=177 Identities=27% Similarity=0.383 Sum_probs=145.9
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC--CChHhHhcceEEEeCCc--cccCC
Q 000553 1206 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRFAVVPQSP--FLFEG 1281 (1428)
Q Consensus 1206 ~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~--i~~~~lR~~i~~VpQdp--~lf~g 1281 (1428)
..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++++++||+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23456788999999998 57888
Q ss_pred cHHHhcCcCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccccCCC
Q 000553 1282 SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358 (1428)
Q Consensus 1282 TIR~NLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~ILlLDEaTS~lD 1358 (1428)
|+++|+.... ..++++..+ ...+.++.+|++.........||+|||||++|||||+++|++|||||||++||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVER-----RVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9999996421 122222211 12233344456555556667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccChhh
Q 000553 1359 AQTASILQNAISSEC-KGMTVITIAHRIST 1387 (1428)
Q Consensus 1359 ~~te~~Iq~~i~~~~-~~~TvI~IaHrl~t 1387 (1428)
+.+.+.+.+.|++.. +++|||+|||+++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 160 PAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999998764 47899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=329.23 Aligned_cols=206 Identities=25% Similarity=0.386 Sum_probs=166.3
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+.... ...++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 3688999999964211 112469999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCC--CCCcccHHHHHhcCCC---CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHH
Q 000553 673 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1428)
Q Consensus 673 -----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQ 738 (1428)
.|+|++|+| .+++.|++|||.++.. .+.+ +.+++++..++..+ .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~ 150 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQ 150 (280)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHH
Confidence 389999998 5778899999987532 2222 23344444455321 1244567899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEecCh
Q 000553 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817 (1428)
Q Consensus 739 kqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~ 817 (1428)
|||++||||++.+|+++||||||++||+...+.+.+. +......++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL-FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999988876 3321234789999999999886 4999999999999999998
Q ss_pred HHHHh
Q 000553 818 ADLAV 822 (1428)
Q Consensus 818 ~el~~ 822 (1428)
+++..
T Consensus 230 ~~~~~ 234 (280)
T PRK13649 230 KDIFQ 234 (280)
T ss_pred HHHhc
Confidence 88754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=318.42 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=162.4
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|.. ..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 6 ~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 6 PLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred ceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 46899999999852 2359999999999999999999999999999999999999999998875
Q ss_pred --cEEEEcCCCCCCcccHHHHHhcCCC-----CChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHH
Q 000553 673 --SIAYVPQVPWILSGTIRDNILFGKN-----YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 673 --~i~y~~Q~p~l~~~ti~~nI~~g~~-----~~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 745 (1428)
.++|++|+|.+++.|++||+.++.. .++++..+.++.+++.. +.....+.+|||||||||+||
T Consensus 80 ~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~la 149 (225)
T PRK10247 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLI 149 (225)
T ss_pred HhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHH
Confidence 4899999999998999999986421 12233445555555532 223556779999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhcCCEEEEEe-CCeEEEecChH
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMD-KGQVKWIGSSA 818 (1428)
Q Consensus 746 Raly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~-~G~i~~~g~~~ 818 (1428)
||++++|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+.+.++.||++++|+ ++..+++|+|+
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 150 RNLQFMPKVLLLDEITSALDESNKHNVNEI-IHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999998887775 33211 23789999999999998999999995 56666777664
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=338.59 Aligned_cols=188 Identities=26% Similarity=0.397 Sum_probs=158.3
Q ss_pred cceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC---------------------cEEEEcCCCCC
Q 000553 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------------------SIAYVPQVPWI 683 (1428)
Q Consensus 625 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---------------------~i~y~~Q~p~l 683 (1428)
.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|++|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 359999999999999999999999999999999999999999998875 39999999999
Q ss_pred Cc-ccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEE
Q 000553 684 LS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755 (1428)
Q Consensus 684 ~~-~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~il 755 (1428)
++ .|++|||.++.. .++ ++..++++..+|+... .....+|||||||||+|||||+.+|+|+
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 87 699999998742 222 3445566666665433 2344589999999999999999999999
Q ss_pred EEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchh-hcCCEEEEEeCCeEEEecChHHHHhc
Q 000553 756 MLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 756 lLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l-~~ad~i~~l~~G~i~~~g~~~el~~~ 823 (1428)
|||||||+||+.+.+.+.+.+..-....++|+|++||+++.+ ..||+|++|++|++++.|+++++...
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999888864322112378999999999986 45999999999999999999998643
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=318.07 Aligned_cols=197 Identities=25% Similarity=0.294 Sum_probs=161.5
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|+.... ...+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEH--ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCCc--ceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 35889999999964211 01359999999999999999999999999999999999999999998764
Q ss_pred ------cEEEEcCCCCCCcc-cHHHHHhcCC---CCC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHH
Q 000553 673 ------SIAYVPQVPWILSG-TIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1428)
Q Consensus 673 ------~i~y~~Q~p~l~~~-ti~~nI~~g~---~~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQ 738 (1428)
.++|++|+|.++.. |++||+.++. ..+ +++..+.++.+++...+.. ...+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge 151 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGE 151 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHH
Confidence 38999999988775 9999998642 112 2345666777777544432 345899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhcCCEEEEEeCCeEEEe
Q 000553 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWI 814 (1428)
Q Consensus 739 kqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~ 814 (1428)
|||++||||++.+|+++||||||++||+...+.+.+. +..... .++|+|++||+.+.+..||++++|++|+++++
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL-LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999988876 332112 37899999999999888999999999998753
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=326.84 Aligned_cols=204 Identities=26% Similarity=0.347 Sum_probs=169.0
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|+++.|+.... ..+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKESD---VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCCCc---CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 4789999999964211 2359999999999999999999999999999999999999999998875
Q ss_pred -cEEEEcCCCC--CCcccHHHHHhcCCC---CCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 -~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.++|++|+|. +++.|+.|||.++.. ... ++++++++.+++.... ......||||||||+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRV 149 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHH
Confidence 3899999984 667899999987532 222 2345566666664322 234568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHHH
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el~ 821 (1428)
+||||++.+|+++||||||++||+.+.+.+.+. +..... .+.|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRV-IHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999988875 332122 378999999999999889999999999999999998876
Q ss_pred hc
Q 000553 822 VS 823 (1428)
Q Consensus 822 ~~ 823 (1428)
..
T Consensus 229 ~~ 230 (277)
T PRK13642 229 AT 230 (277)
T ss_pred cC
Confidence 43
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.30 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=166.3
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCC-----CeEEEEcC-------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASG------- 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~-----~G~i~~~~------- 672 (1428)
.++++|+++.|+. . .+|+|+||+|++|++++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNFFYHK---H---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEEEECC---e---eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 5789999999863 2 2599999999999999999999999999999999999987 69987653
Q ss_pred --------cEEEEcCCCCCCcccHHHHHhcCCCC----Ch----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
.++|++|+|.+++.|++||+.++..+ .+ ++..++++..++...+. +..+..+.+|||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 150 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSG 150 (251)
T ss_pred cChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCH
Confidence 39999999999988999999886421 11 22233333444432221 234567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
||||||+||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL-MQE-LKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeC
Confidence 999999999999999999999999999999999988775 433 3357899999999999876 8999999999999999
Q ss_pred ChHHHHh
Q 000553 816 SSADLAV 822 (1428)
Q Consensus 816 ~~~el~~ 822 (1428)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14249 229 RTGEIFS 235 (251)
T ss_pred CHHHHHh
Confidence 9888753
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=322.85 Aligned_cols=203 Identities=24% Similarity=0.310 Sum_probs=168.9
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC-----CCeEEEEcC-------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~-----~~G~i~~~~------- 672 (1428)
-++++|+++.|+. . .+|+|+||++++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 4 KMESKNLNLWYGE---K---QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred EEEEEEeEEEECC---e---eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 4789999999853 2 259999999999999999999999999999999999875 799998764
Q ss_pred --------cEEEEcCCCCCCcccHHHHHhcCCCC----Ch----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
.++|++|++.+++.|++||+.|+... +. ++..++++.+++..++.. ..+.....|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 150 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSG 150 (251)
T ss_pred ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCH
Confidence 38999999999999999999876321 21 234566677766443321 23456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
|||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-L~~-~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL-MVE-LKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999988775 433 3346899999999998765 9999999999999999
Q ss_pred ChHHHHh
Q 000553 816 SSADLAV 822 (1428)
Q Consensus 816 ~~~el~~ 822 (1428)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14270 229 KTEKIFL 235 (251)
T ss_pred CHHHHhc
Confidence 9888753
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=315.49 Aligned_cols=191 Identities=23% Similarity=0.390 Sum_probs=157.6
Q ss_pred EEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC---------cEEEE
Q 000553 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------SIAYV 677 (1428)
Q Consensus 607 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---------~i~y~ 677 (1428)
+++|+++.|+. . .+++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 2 ~~~~l~~~~~~---~---~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~ 75 (210)
T cd03269 2 EVENVTKRFGR---V---TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75 (210)
T ss_pred EEEEEEEEECC---E---EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEe
Confidence 57888888852 2 359999999999999999999999999999999999999999999876 49999
Q ss_pred cCCCCCCcc-cHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000553 678 PQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1428)
Q Consensus 678 ~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly 749 (1428)
+|++.++.+ |++||+.++.. .+ +++..+.++..+++... .....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHh
Confidence 999988865 99999986421 11 23344555555554332 3455689999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 750 ~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
.+|+++||||||++||+.+.+++.+. +.....+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999988876 33212347899999999998865 9999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=320.56 Aligned_cols=199 Identities=26% Similarity=0.355 Sum_probs=164.0
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+. . .+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~---~---~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (240)
T PRK09493 2 IEFKNVSKHFGP---T---QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75 (240)
T ss_pred EEEEeEEEEECC---e---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHH
Confidence 578899998852 2 359999999999999999999999999999999999999999998765
Q ss_pred --cEEEEcCCCCCCc-ccHHHHHhcCC----CCCh----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 --SIAYVPQVPWILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 --~i~y~~Q~p~l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
.++|++|++.++. .|++||+.++. ..+. ++..++++..+++.. .......||||||||
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qr 144 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAER-----------AHHYPSELSGGQQQR 144 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHH-----------HhcChhhcCHHHHHH
Confidence 3899999998875 59999998753 1222 233445555444322 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el 820 (1428)
++||||++.+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKV-MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999988875 33212347899999999999865 999999999999999998887
Q ss_pred Hh
Q 000553 821 AV 822 (1428)
Q Consensus 821 ~~ 822 (1428)
..
T Consensus 224 ~~ 225 (240)
T PRK09493 224 IK 225 (240)
T ss_pred hc
Confidence 53
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=322.91 Aligned_cols=203 Identities=28% Similarity=0.356 Sum_probs=165.8
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCc--cC---CCeEEEEcC-------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM--ML---THGSIHASG------- 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~--~~---~~G~i~~~~------- 672 (1428)
.++++|+++.|+. . .+|+|+||++++||+++|+||||||||||+++|.|.. .| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~---~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYNK---K---KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEECC---e---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 5789999999963 2 3599999999999999999999999999999999985 36 589998764
Q ss_pred --------cEEEEcCCCCCCcccHHHHHhcCCC---C-Ch----HHHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 673 --------SIAYVPQVPWILSGTIRDNILFGKN---Y-DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~---~-~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
.++|++|+|.+++.|++||+.++.. . ++ ++..++++.+++...+. +..+....+|||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 151 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSG 151 (252)
T ss_pred cchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCH
Confidence 3899999999999999999986521 1 11 22333455555533222 234566779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-cCCEEEEEeCCeEEEec
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g 815 (1428)
|||||++||||+..+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET-LLG-LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH-HHH-HhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988876 433 334689999999999875 59999999999999999
Q ss_pred ChHHHHh
Q 000553 816 SSADLAV 822 (1428)
Q Consensus 816 ~~~el~~ 822 (1428)
+.+++..
T Consensus 230 ~~~~~~~ 236 (252)
T PRK14239 230 DTKQMFM 236 (252)
T ss_pred CHHHHHh
Confidence 9888753
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=311.08 Aligned_cols=188 Identities=20% Similarity=0.291 Sum_probs=157.2
Q ss_pred EEEEEEEEEECCCCCccceeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCChHhHhcceEE
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~is~~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1271 (1428)
++++|++++|++ +.++ ++||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ++.+++
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 789999999963 3344 599999999999999999999999999999999999999999999986543 456999
Q ss_pred EeCCccc-cCCcHHHhcCcCCCC--ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000553 1272 VPQSPFL-FEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348 (1428)
Q Consensus 1272 VpQdp~l-f~gTIR~NLdp~~~~--~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL~~~~IL 1348 (1428)
+||++.+ |..|+++|+...... .++++.++++.+ |++......+.+||+|||||++||||++++|+++
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYF---------KLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHc---------CCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999754 678999999653211 233444444544 4444455566789999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhhhhcCEEE
Q 000553 1349 CLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEIL 1395 (1428)
Q Consensus 1349 lLDEaTS~lD~~te~~Iq~~i~~~-~~~~TvI~IaHrl~ti~~~DrI~ 1395 (1428)
+|||||++||+.+.+.+.+.|++. .+++|+|+|||+++.+.++|-|.
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999753 36899999999999999998763
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=323.79 Aligned_cols=201 Identities=26% Similarity=0.348 Sum_probs=166.8
Q ss_pred CceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC----------
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~---------- 672 (1428)
+..++++|+++.|+. . .+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~i~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 9 DTTFALRNVSFRVPG---R---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred CceEEEeeEEEEECC---E---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHH
Confidence 456899999999853 2 359999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEcCCCCCCcc-cHHHHHhcCCC--------C---ChHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchH
Q 000553 673 ---SIAYVPQVPWILSG-TIRDNILFGKN--------Y---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~--------~---~~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGG 737 (1428)
.++|++|++-++.+ |+.||+.++.. . +.++..++++.++++..+. ....+||||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 151 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGG 151 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHH
Confidence 38999999876554 99999987531 1 1234556667777654333 233489999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeEEEec
Q 000553 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 738 QkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g 815 (1428)
||||++||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~-l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~ 230 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL-VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQG 230 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 99999999999999999999999999999999888775 332112 3789999999999986 59999999999999999
Q ss_pred ChHHHH
Q 000553 816 SSADLA 821 (1428)
Q Consensus 816 ~~~el~ 821 (1428)
+.+++.
T Consensus 231 ~~~~~~ 236 (265)
T PRK10575 231 TPAELM 236 (265)
T ss_pred CHHHhc
Confidence 988764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=325.42 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=167.6
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------ 672 (1428)
.++++|++++|+.. ..+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 3 LIETRDLCYSYSGS-----KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred eEEEEEEEEEeCCC-----CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 36789999999532 1359999999999999999999999999999999999999999998865
Q ss_pred -cEEEEcCCCC--CCcccHHHHHhcCC---CCChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHH
Q 000553 673 -SIAYVPQVPW--ILSGTIRDNILFGK---NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1428)
Q Consensus 673 -~i~y~~Q~p~--l~~~ti~~nI~~g~---~~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 742 (1428)
.++||+|+|. +++.||+||+.++. .++++ ++++.++.+++...+. .....||||||||+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl 146 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRV 146 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHH
Confidence 3899999983 67789999998753 23432 3456666666654433 33458999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-cCCEEEEEeCCeEEEecChHHH
Q 000553 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 743 alARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~el 820 (1428)
+||||++.+|+++||||||++||+.+.+.+.+. +..... ++.|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 147 ~laraL~~~p~llilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF-LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999988775 332122 3789999999999985 6999999999999999999988
Q ss_pred Hh
Q 000553 821 AV 822 (1428)
Q Consensus 821 ~~ 822 (1428)
..
T Consensus 226 ~~ 227 (277)
T PRK13652 226 FL 227 (277)
T ss_pred hc
Confidence 64
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=324.80 Aligned_cols=203 Identities=25% Similarity=0.381 Sum_probs=166.9
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
..++++|+++.|+... ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~i~~l~~~~~~~~----~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA----SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCCC----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 4589999999996421 2359999999999999999999999999999999999999999999876
Q ss_pred --cEEEEcCCCC--CCcccHHHHHhcCCC---CChH----HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 --SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 --~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
.++|++|+|+ +++.|+++|+.++.. .+.+ +.+++++..++.... .....+||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr 150 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQR 150 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHH
Confidence 3899999996 456699999988632 2222 233445555544322 33556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhcCCEEEEEeCCeEEEecChHHH
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~el 820 (1428)
++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+..||+|++|++|++++.|+++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDL-VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988876 333122 37899999999999888999999999999999999887
Q ss_pred Hh
Q 000553 821 AV 822 (1428)
Q Consensus 821 ~~ 822 (1428)
..
T Consensus 230 ~~ 231 (269)
T PRK13648 230 FD 231 (269)
T ss_pred hc
Confidence 54
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=320.32 Aligned_cols=197 Identities=21% Similarity=0.312 Sum_probs=164.2
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+. . .+|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 3 i~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 3 LYLEGLSVSFDG---F---KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred EEEEeeEEEcCC---e---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHh
Confidence 678999999853 1 359999999999999999999999999999999999999999998865
Q ss_pred -cEEEEcCCCCCCcc-cHHHHHhcCCCCC---------------hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccc
Q 000553 673 -SIAYVPQVPWILSG-TIRDNILFGKNYD---------------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~~~---------------~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LS 735 (1428)
.++|++|++.++++ |++||+.++...+ +++.++.++..+++ ........+||
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 145 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-----------DEADRLAGLLS 145 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCC
Confidence 38999999998876 9999998753211 12233344443333 22345667899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEe
Q 000553 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1428)
Q Consensus 736 GGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 814 (1428)
||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 146 ~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL-LKS-LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHH-HHH-HhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999999999999999999988876 332 3346899999999999875 999999999999999
Q ss_pred cChHHHH
Q 000553 815 GSSADLA 821 (1428)
Q Consensus 815 g~~~el~ 821 (1428)
|+++++.
T Consensus 224 ~~~~~~~ 230 (242)
T TIGR03411 224 GSLDQVQ 230 (242)
T ss_pred CCHHHHh
Confidence 9988874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=323.09 Aligned_cols=202 Identities=25% Similarity=0.313 Sum_probs=166.1
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~----------- 672 (1428)
+.++++|+++.|+. . .+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE---H---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 45899999999863 2 359999999999999999999999999999999999999999998765
Q ss_pred ---------------cEEEEcCCCCCCcc-cHHHHHhcCC----CCCh----HHHHHHHHHhcchHHHhcccCCCccccc
Q 000553 673 ---------------SIAYVPQVPWILSG-TIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIG 728 (1428)
Q Consensus 673 ---------------~i~y~~Q~p~l~~~-ti~~nI~~g~----~~~~----~~~~~v~~~c~l~~di~~l~~gd~t~ig 728 (1428)
.++|++|+|.++.. |++||+.++. ..++ ++..+.++..++...+ .+
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~ 147 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QG 147 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hh
Confidence 38999999998875 9999998642 1221 2333444444443221 13
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEe
Q 000553 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD 807 (1428)
Q Consensus 729 ~~g~~LSGGQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~ 807 (1428)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+. +......++|+|++||+++.+.. ||+|++|+
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~ 226 (257)
T PRK10619 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 226 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 45678999999999999999999999999999999999999988875 33312347899999999999885 99999999
Q ss_pred CCeEEEecChHHHHh
Q 000553 808 KGQVKWIGSSADLAV 822 (1428)
Q Consensus 808 ~G~i~~~g~~~el~~ 822 (1428)
+|++++.|+++++..
T Consensus 227 ~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 227 QGKIEEEGAPEQLFG 241 (257)
T ss_pred CCEEEEeCCHHHhhh
Confidence 999999999888753
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=332.29 Aligned_cols=187 Identities=24% Similarity=0.342 Sum_probs=158.8
Q ss_pred cceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC------------cEEEEcCCCCCCcc-cHHHH
Q 000553 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SIAYVPQVPWILSG-TIRDN 691 (1428)
Q Consensus 625 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------~i~y~~Q~p~l~~~-ti~~n 691 (1428)
.+|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++| .+||++|++.++.. |++||
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 359999999999999999999999999999999999999999999876 48999999988875 99999
Q ss_pred HhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccc
Q 000553 692 ILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 764 (1428)
Q Consensus 692 I~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illLDep~s~L 764 (1428)
+.+... .+ .++.+++++.++|.... ..+..+||||||||++||||++++|+++||||||++|
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 986421 11 23456667777765433 2345689999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHHhc
Q 000553 765 DAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 765 D~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~~~ 823 (1428)
|+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 D~~~~~~l~~~-l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDY-IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999988876 33312347899999999999875 999999999999999999998654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=315.89 Aligned_cols=197 Identities=27% Similarity=0.411 Sum_probs=164.7
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-----------cE
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~-----------~i 674 (1428)
++++|++++|+. . ..|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~-----~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 73 (232)
T PRK10771 2 LKLTDITWLYHH-----L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV 73 (232)
T ss_pred eEEEEEEEEECC-----c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccE
Confidence 578999999852 1 2389999999999999999999999999999999999999999875 38
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCC--C--C---hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHH
Q 000553 675 AYVPQVPWILSG-TIRDNILFGKN--Y--D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1428)
Q Consensus 675 ~y~~Q~p~l~~~-ti~~nI~~g~~--~--~---~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalAR 746 (1428)
+|++|+|.++.+ |++|||.++.. . . +++..++++..+++..+... ...||||||||++|||
T Consensus 74 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lar 142 (232)
T PRK10771 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARL-----------PGQLSGGQRQRVALAR 142 (232)
T ss_pred EEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCC-----------cccCCHHHHHHHHHHH
Confidence 999999988875 99999987531 1 1 23455667777776544433 3489999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhc-CCEEEEEeCCeEEEecChHHHHh
Q 000553 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 747 aly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~el~~ 822 (1428)
|++++|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||++++|++|++.+.|+++++..
T Consensus 143 al~~~p~lllLDEP~~gLD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 143 CLVREQPILLLDEPFSALDPALRQEMLTL-VSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999888776 332122 37899999999999865 99999999999999999888754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=317.21 Aligned_cols=188 Identities=23% Similarity=0.397 Sum_probs=155.7
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
++++|+++.|+.+ ..+|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (214)
T TIGR02673 2 IEFHNVSKAYPGG-----VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL 76 (214)
T ss_pred EEEEeeeEEeCCC-----ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 5788999998421 2359999999999999999999999999999999999999999998754
Q ss_pred ---cEEEEcCCCCCCc-ccHHHHHhcCCC---CC----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHH
Q 000553 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 741 (1428)
.++|++|+|.++. .|++||+.++.. ++ +++.++.++..++...+.. ...+||||||||
T Consensus 77 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr 145 (214)
T TIGR02673 77 LRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQR 145 (214)
T ss_pred HHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHH
Confidence 4899999999886 599999987521 22 2345566666666544332 335899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCe
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQ 810 (1428)
Q Consensus 742 valARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~ 810 (1428)
++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|+
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDL-LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999988876 33212347899999999999875 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=300.40 Aligned_cols=205 Identities=26% Similarity=0.396 Sum_probs=168.1
Q ss_pred EEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccCCCeEEEEcC-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~~~G~i~~~~------------- 672 (1428)
.+++|.+..|.. ..+|+++||++++||+++++|+||+||||||++|+|..++.+|+|..+|
T Consensus 4 L~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r 77 (237)
T COG0410 4 LEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77 (237)
T ss_pred eeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHh
Confidence 567888887753 2359999999999999999999999999999999999999999999887
Q ss_pred -cEEEEcCCCCCCcc-cHHHHHhcCCCCChH-HHHHHHHHhcchHHHhcccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000553 673 -SIAYVPQVPWILSG-TIRDNILFGKNYDPQ-SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1428)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~~~~~-~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly 749 (1428)
.|+||||.-.+|.. ||+||+..|....+. ...+. .++.-.+.+|.- ......++.+|||||||-+|+||||.
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHh
Confidence 49999999999976 999999987433221 11110 022233444431 23456788899999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-C-CceEEEEccCcch-hhcCCEEEEEeCCeEEEecChHHHHhc
Q 000553 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-L-QKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 750 ~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~-~-~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~el~~~ 823 (1428)
++|++|+||||+.+|-|...+.|++. +.. +. + +.||++|.++..+ ++.||+.|+|++|+|+.+|+.+|+..+
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~-i~~-l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEA-IKE-LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHH-HHH-HHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999987 333 22 2 5699999999987 567999999999999999999998643
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=362.52 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=85.8
Q ss_pred CCch-hhhcCCCCCChhHHHHHHHHHHHccC--CCEEEEeccccCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhhhh
Q 000553 1315 GLET-FVKESGISFSVGQRQLICLARALLKS--SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN 1390 (1428)
Q Consensus 1315 gLdt-~v~e~G~~LSgGQrQrl~LARALL~~--~~ILlLDEaTS~lD~~te~~Iq~~i~~~~-~~~TvI~IaHrl~ti~~ 1390 (1428)
||+. .++.....|||||-||+-||+.|=.+ .=+.||||||.+|-+.--+.+.++|++.. .|.|||+|-|+.++|+.
T Consensus 1375 GL~YLtL~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~ 1454 (1809)
T PRK00635 1375 GLSYITLGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEH 1454 (1809)
T ss_pred CCCcccccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 4443 34556678999999999999999875 35779999999999988888888888776 59999999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcc
Q 000553 1391 MDEILIL------DHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1391 ~DrI~Vl------~~G~ive~g~p~eLl~~ 1414 (1428)
||.|+-| ..|+|+.+|+|++++.+
T Consensus 1455 AD~iidiGPgAG~~GG~iv~~G~~~~l~~~ 1484 (1809)
T PRK00635 1455 ADHLIHLGPGSGPQGGYLLSTSALKQSQPD 1484 (1809)
T ss_pred CCEEEEeCCCccCCCCEEEecCCHHHHhhh
Confidence 9999999 46999999999999753
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=320.77 Aligned_cols=202 Identities=26% Similarity=0.353 Sum_probs=166.3
Q ss_pred eEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCccC-----CCeEEEEcC-------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~~-----~~G~i~~~~------- 672 (1428)
.++++|+++.|+. . .+++|+||+|++||+++|+||||||||||+++|+|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD---F---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC---c---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4789999999863 1 359999999999999999999999999999999998763 689998764
Q ss_pred --------cEEEEcCCCCCCcccHHHHHhcCCCC----C----hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccch
Q 000553 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1428)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSG 736 (1428)
.++|++|+|.+++.|++||+.++... + +++..++++.+++..++. ...+..+.+|||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 149 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSG 149 (250)
T ss_pred cchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCH
Confidence 38999999998889999999876321 1 123344555555543332 224556779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEeCCeEEEec
Q 000553 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 737 GQkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 815 (1428)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL-IQE-LKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988765 433 3457899999999998765 9999999999999999
Q ss_pred ChHHHH
Q 000553 816 SSADLA 821 (1428)
Q Consensus 816 ~~~el~ 821 (1428)
+.+++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14240 228 DTVDLF 233 (250)
T ss_pred CHHHHH
Confidence 988875
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=321.67 Aligned_cols=204 Identities=25% Similarity=0.332 Sum_probs=169.0
Q ss_pred ceEEEEccEEeecCCCccccccceeeeeeEecCCCEEEEEcCCCCcHHHHHHHHHcCcc-----CCCeEEEEcC------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------ 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llG~~~-----~~~G~i~~~~------ 672 (1428)
..++++|++++|+. . .+|+|+||+|++||+++|+|+||||||||+++|+|... |++|+|.++|
T Consensus 9 ~~l~i~~v~~~~~~---~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS---F---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC---E---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 46899999999853 2 35999999999999999999999999999999999876 4799998764
Q ss_pred ---------cEEEEcCCCCCCcccHHHHHhcCCCC---C---hHHHHHHHHHhcchHHHhcccCCCcccccCCCCccchH
Q 000553 673 ---------SIAYVPQVPWILSGTIRDNILFGKNY---D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1428)
Q Consensus 673 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~~---~---~~~~~~v~~~c~l~~di~~l~~gd~t~ig~~g~~LSGG 737 (1428)
.++|++|+|.+++.|++|||.++... . +++..++++.+++..++.. ..+..+.+||||
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG 155 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGG 155 (264)
T ss_pred ccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHH
Confidence 38999999999888999999876431 1 2334455666666544431 235567799999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhc-CCEEEEEe---------
Q 000553 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD--------- 807 (1428)
Q Consensus 738 QkqRvalARaly~~~~illLDep~s~LD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~--------- 807 (1428)
||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL-MHE-LKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEecCHHHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999988776 333 3445899999999998765 99999998
Q ss_pred CCeEEEecChHHHHh
Q 000553 808 KGQVKWIGSSADLAV 822 (1428)
Q Consensus 808 ~G~i~~~g~~~el~~ 822 (1428)
+|++++.|+.+|+..
T Consensus 234 ~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 234 YGYLVEFDRTEKIFN 248 (264)
T ss_pred CceEEEeCCHHHHHh
Confidence 799999999998854
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1428 | ||||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-44 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 8e-32 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-42 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-41 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 7e-20 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-38 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-37 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-36 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-36 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 8e-36 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 8e-36 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-35 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-35 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-35 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-34 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-34 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-34 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-33 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-33 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-32 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-31 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-31 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-13 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-31 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-31 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-31 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-13 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-30 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 9e-11 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-30 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-10 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-30 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 8e-13 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-30 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-11 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-29 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-29 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 4e-11 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-29 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-11 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-28 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-12 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-28 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-12 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-28 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-13 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-28 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-10 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 9e-28 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-27 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-23 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-22 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-22 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-22 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-14 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-12 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-11 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-10 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 4e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-10 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-09 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-08 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 6e-08 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 6e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-08 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 2e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 6e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 6e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 8e-04 |
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 349 bits (896), Expect = e-109
Identities = 77/246 (31%), Positives = 132/246 (53%), Gaps = 3/246 (1%)
Query: 1183 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1242
WP G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL
Sbjct: 11 DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70
Query: 1243 TPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL 1302
G+I +DG++ + + R F V+PQ F+F G+ R NLDP + D +IW V
Sbjct: 71 LNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 1303 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360
++ ++ +E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 1361 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
T I++ + TVI RI +L D+ L+++ + + + L F
Sbjct: 190 TYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249
Query: 1421 SFVRAS 1426
+ S
Sbjct: 250 AGFIGS 255
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 7e-26
Identities = 62/297 (20%), Positives = 121/297 (40%), Gaps = 40/297 (13%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
E N +L +S + G V ++G GSGKS+LL++ L ++ T G I G
Sbjct: 31 EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGEIQIDGVSWDSITL 89
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYS-----ETLKACTLDVDISLMVG 721
+ +PQ +I SGT R N+ DP ++S + L I G
Sbjct: 90 EQWRKAFGVIPQKVFIFSGTFRKNL------DPNAAHSDQEIWKVADEVGLRSVIEQFPG 143
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+ + G LS G + + LAR+V + I +LD+ + +D + I +
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR--TLKQA 201
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL----AVSLYSGFWSTNEFDTS 837
T ILC ++A+ D +V+++ +V+ S +L A +GF + + +
Sbjct: 202 FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMN-- 259
Query: 838 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAK 894
+ + T ++ + + V + +++++ + + L + +
Sbjct: 260 -FLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDV-----QVGANMSLGIRPEHLL 310
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 358 bits (920), Expect = e-103
Identities = 213/1146 (18%), Positives = 439/1146 (38%), Gaps = 156/1146 (13%)
Query: 374 SDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI------ 427
GE+ T ++ D + ++ +IG+ + F G I
Sbjct: 163 DVGELNTRLTDDV-------SKINEGIG--DKIGMFFQAM-----ATFFGGFIIGFTRGW 208
Query: 428 -----TILLIPVNKWIANLIANATEKMMKQKDERIRRTG----EILTHIRTLKMYGWEQI 478
+ + PV A + A ++ + G E+L IRT+ +G ++
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268
Query: 479 ----FSSWLMKTRSSEVKHLSTRKYLDA--WCVFFWATTPTLFSL-FTFGLFALMGHQLD 531
+++ L + + +K T + + + + ++L F +G ++ +
Sbjct: 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS-----YALAFWYGTSLVISKEYS 323
Query: 532 AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSY 591
V T + I +A + + + + + + + +S S
Sbjct: 324 IGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKII-------DNKPSIDSFSK 376
Query: 592 ISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 651
+ N + ++ S Y + +E Q +L ++L + G VA++G G GKS
Sbjct: 377 SGHKPDNIQGN---LEFKNIHFS-YPSRKEVQ--ILKGLNLKVKSGQTVALVGNSGCGKS 430
Query: 652 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY 698
+ + + G + G I V Q P + + TI +NI +G+
Sbjct: 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-- 488
Query: 699 DPQSYSETLKACTL-DVD--ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755
+ + E KA + I + +GE+G LSGGQ+ R+A+ARA+ I
Sbjct: 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548
Query: 756 MLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
+LD+ SA+D + + L A G +T I+ H + + AD++ D G +
Sbjct: 549 LLDEATSALDTESEAVVQAALDKAREG-----RTTIVIAHRLSTVRNADVIAGFDGGVIV 603
Query: 813 WIGSSADL--AVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSD-- 868
G+ +L +Y T + + + ++ N + ++ +
Sbjct: 604 EQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRS 663
Query: 869 ---------DAQEIIEVEQRKEGRVELTVYKNYAKFSG--WFITLVICLSAILMQASRNG 917
D + ++ + V + K + W +V AI+ +
Sbjct: 664 TRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPA 723
Query: 918 NDLWLSYWVD----TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVK 973
+ S V + +++ + ++ I + + ++ F+F +
Sbjct: 724 FSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKR 783
Query: 974 VHNTLLTKIVNAPVLFFDQ---TPGGRILNRFSSDL----YMIDDSLPFILNILLANFVG 1026
+ + ++ V +FD T G + R ++D L I + AN
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTG-ALTTRLANDAAQVKGATGSRLAVIFQNI-ANLGT 841
Query: 1027 LLGIAVV----LSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFT 1082
+ I+++ L+ + + + ++ + K+ + + L+ + S A+
Sbjct: 842 GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKM-----LSGQALKDKKELEGSGKIAT-- 894
Query: 1083 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSY-SELTASLWLSL-----RLQVGLALS 1136
E + T+ + E F + + + + R + + S A
Sbjct: 895 EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFR 954
Query: 1137 YAAPIVS---------------------LLGNFLSSFTETEKEMVSLERVLEYMD-VPQE 1174
+ A +V+ +G S + K VS ++ ++ P+
Sbjct: 955 FGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEI 1014
Query: 1175 ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGK 1232
+ Q L P+ +G ++F V Y P+ P L ++ ++ G + +VG +G GK
Sbjct: 1015 DSYSTQGLKPN-MLEGNVQFSGVVFNY-PTRPSIPVLQGLSLEVKKGQTLALVGSSGCGK 1072
Query: 1233 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DP 1289
S+++ L R G + +DG I V+ LR + +V Q P LF+ S+ +N+ D
Sbjct: 1073 STVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDN 1132
Query: 1290 FHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1347
+ +I ++ ++ + ++++ T V + G S GQ+Q I +ARAL++ +
Sbjct: 1133 SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192
Query: 1348 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGN 1407
L LDE T+ +D ++ ++Q A+ +G T I IAHR+ST+ N D I+++ +G + E G
Sbjct: 1193 LLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGT 1252
Query: 1408 PQTLLQ 1413
Q LL
Sbjct: 1253 HQQLLA 1258
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 5e-66
Identities = 122/539 (22%), Positives = 218/539 (40%), Gaps = 77/539 (14%)
Query: 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 998
++Y + + +++ + + + R K+ I+N + +FD G +
Sbjct: 111 AYYYTGIGAGVLIVAYI---QVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGEL 167
Query: 999 LNRFSSDLYMIDDSLPFILNILLAN---FVGLLGIAVVLSY----VQVFFLLLLVPFWFI 1051
R + D+ I++ + + + F G I + V + +L I
Sbjct: 168 NTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGI 227
Query: 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1111
++K T +E L + +++ A E L T+ AF + + ++ ++
Sbjct: 228 WAK--ILSSFTDKE---LHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEA 280
Query: 1112 QRTS------YSELTASLWLSLRLQVGLALSYAAPIVS---------------------L 1144
+R + + +L + LA Y +V
Sbjct: 281 KRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFS 340
Query: 1145 LGNFLSSFTETEKEMVSLERVLEYMD-VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKP 1203
+G + + V + +D P + PD QG +EF+N+ Y P
Sbjct: 341 VGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPD-NIQGNLEFKNIHFSY-P 398
Query: 1204 SLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1261
S L +N ++ G V +VG +G GKS+ + + RL G + +DG +I
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 1262 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV------- 1314
VR LR VV Q P LF ++ +N+ + +D+ +E+E
Sbjct: 459 VRYLREIIGVVSQEPVLFATTIAENIR--YGREDVT----------MDEIEKAVKEANAY 506
Query: 1315 --------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+T V E G S GQ+Q I +ARAL+++ K+L LDE T+ +D ++ +++Q
Sbjct: 507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ 566
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425
A+ +G T I IAHR+STV N D I D G +VEQGN L++ E ++ V
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVMT 624
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 3e-30
Identities = 109/536 (20%), Positives = 198/536 (36%), Gaps = 71/536 (13%)
Query: 320 VLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM-TIIYQKCLYVRLAERSEFSDGEI 378
+L I +T L+ F + L+K +LR + +++ Q + + + + G +
Sbjct: 757 ILGIISFITFFLQGFTFGKAGEILTK---RLRYMVFKSMLRQDVSWF---DDPKNTTGAL 810
Query: 379 QTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL-----LYTQVKFAFVSGLAITILLIP 433
T ++ D + + ++ FQ L L + + LAI ++
Sbjct: 811 TTRLANDAA---QVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLL-LLAIVPIIAI 866
Query: 434 VNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKH 493
+++ K K+ + + E + + RT+ EQ F + +
Sbjct: 867 AGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFET-MYAQSLQIPYR 925
Query: 494 LSTRKYLDAWCVFFWATTPTLFS---LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLN 550
+ +K F + FS F FG + + + V + +
Sbjct: 926 NAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVG 985
Query: 551 SFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQD 610
A +S + R +E+ SY + GL + V
Sbjct: 986 QVSSFAPDYAKATVSASHIIRI---------IEKTPEIDSYSTQGLKPNMLEG-NVQFSG 1035
Query: 611 ATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML------T 664
+ Y VL +SL + KG +A++G G GKS+++ +L
Sbjct: 1036 VVFN-YPTRPSIP--VLQGLSLEVKKGQTLALVGSSGCGKSTVVQ------LLERFYDPM 1086
Query: 665 HGSIHASGS-------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711
GS+ G + V Q P + +I +NI +G N SY E ++A
Sbjct: 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 712 L----DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
I + +G+KG LSGGQ+ R+A+ARA+ I +LD+ SA+D +
Sbjct: 1147 EANIHQF-IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 768 VARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ + L A +T I+ H + I AD++VV+ G+VK G+ L
Sbjct: 1206 SEKVVQEALDKA-----REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = 1e-96
Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)
Query: 600 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
+ V+M++ T W EE VL ++ + +G L+AV G G+GK+SLL I+G
Sbjct: 1 SLTTTEVVMENVTAFW----EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
Query: 660 EMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
E+ + G I SG I++ Q WI+ GTI++NI+FG +YD Y +KAC L+ DIS
Sbjct: 57 ELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
D +GE G+ LSGGQRAR++LARAVY +D+Y+LD +D + I + +
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
M KTRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 177 -LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 6e-43
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 23/243 (9%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+ +NVT ++ L DINF IE G + + G TGAGK+S+L + G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKC 1305
+I GR + Q ++ G++++N+ + D+ + SV++ C
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSY---DEYRYRSVIKAC 107
Query: 1306 HVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
++E++ A + E GI+ S GQR I LARA+ K + + LD +D T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 1364 -ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1422
I ++ + T I + ++ + D+ILIL G G L + FSS
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQ-PDFSSK 226
Query: 1423 VRA 1425
+
Sbjct: 227 LMG 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = 2e-96
Identities = 96/217 (44%), Positives = 141/217 (64%), Gaps = 5/217 (2%)
Query: 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664
++ +++AT +W LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM
Sbjct: 3 SITVRNATFTW----ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 58
Query: 665 HGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
G + GS+AYVPQ WI + ++R+NILFG + Y ++AC L D+ ++ GD
Sbjct: 59 EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDR 118
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
IGEKGVNLSGGQ+ R++LARAVY +DIY+ DD LSAVDA V + I N I ML+
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 785 -KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
KTRIL TH++ + D+++VM G++ +GS +L
Sbjct: 179 NKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL 215
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 2e-42
Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 25/244 (10%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
I +N T + S P L+ I F+I G V +VG+ G GKSS+L+AL G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH 1306
+ + +G A VPQ ++ SLR+N+ ++ SV++ C
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQL---EEPYYRSVIQACA 105
Query: 1307 VKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS- 1363
+ ++E G T + E G++ S GQ+Q + LARA+ ++ + D+ + VDA
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 1364 ILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1421
I +N I + K T I + H +S + +D I+++ G + E G+ Q LL + F+
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAE 224
Query: 1422 FVRA 1425
F+R
Sbjct: 225 FLRT 228
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 301 bits (774), Expect = 3e-93
Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 24/307 (7%)
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQ 623
+ + +T F E EL + A N+ + D + S+ N
Sbjct: 5 VVMENVTAFW--EEGFGELFEKAKQ-----------NNNNRKTSNGDDSLSF-SNFSLLG 50
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 683
VL ++ + +G L+AV G G+GK+SLL I+GE+ + G I SG I++ Q WI
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI 110
Query: 684 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743
+ GTI++NI+ G +YD Y +KAC L+ DIS D +GE G+ LSGGQRAR++
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMV 803
LARAVY +D+Y+LD +D + I + + M KTRIL T ++ + AD +
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK-LMANKTRILVTSKMEHLKKADKI 228
Query: 804 VVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDV 863
+++ +G + G+ ++L +F +S M ++ IL +
Sbjct: 229 LILHEGSSYFYGTFSELQN-------LRPDF-SSKLMGCDSFDQFSAERRNSILTETLHR 280
Query: 864 VSVSDDA 870
S+ DA
Sbjct: 281 FSLEGDA 287
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 2e-43
Identities = 68/276 (24%), Positives = 114/276 (41%), Gaps = 30/276 (10%)
Query: 1159 MVSLERVLEYMDVPQEELC----GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINF 1214
V +E V + + EL + + F N ++ P L DINF
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINF 59
Query: 1215 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1274
IE G + + G TGAGK+S+L + G+I GR + Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQ 106
Query: 1275 SPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVG 1330
+ ++ G++++N+ + D+ + SV++ C ++E++ A + E GI+ S G
Sbjct: 107 NSWIMPGTIKENIIGVSY---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 163
Query: 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVL 1389
QR I LARA+ K + + LD +D T I ++ + T I + ++ +
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223
Query: 1390 NMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425
D+ILIL G G L FSS +
Sbjct: 224 KADKILILHEGSSYFYGTFSELQNLR-PDFSSKLMG 258
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 4e-83
Identities = 125/563 (22%), Positives = 242/563 (42%), Gaps = 55/563 (9%)
Query: 892 YAK-FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCM 950
F I I L IL AS L +D + + +V+ +
Sbjct: 19 TIAPFKAGLIVAGIAL--ILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI 76
Query: 951 FNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMID 1010
+ + ++ ++ S + + + L ++ PV FFD+ G +L+R + D +
Sbjct: 77 LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA 136
Query: 1011 DSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIYSKLQFFYRST 1062
S L ++ ++G+ +++ Y L++L P + + + ++
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 196
Query: 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR--------- 1113
+ ++ + + + L G + F ++ +F + +
Sbjct: 197 QNTMGQVTTSA--------EQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248
Query: 1114 ---TSYSELTAS------LWLSLRLQVGLALS---------YAAPIVSLLGNFLSSFTET 1155
+L AS L+ + V +L+ ++ L + + +
Sbjct: 249 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQF 308
Query: 1156 EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFT 1215
++ M + + + +D QE+ G + + G +EF+NVT Y AL +IN
Sbjct: 309 QRGMAACQTLFAILDSEQEKDEGKRVIDR---ATGDLEFRNVTFTYPGREVPALRNINLK 365
Query: 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1275
I G V +VGR+G+GKS+I + + R I G IL+DG ++ + LR + A+V Q+
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 1276 PFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVG 1330
LF ++ +N+ + + +I + + + + GL+T + E+G+ S G
Sbjct: 426 VHLFNDTVANNIAYARTEEYSRE-QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484
Query: 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1390
QRQ I +ARALL+ S +L LDE T+ +D ++ +Q A+ K T + IAHR+ST+
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ 544
Query: 1391 MDEILILDHGHLVEQGNPQTLLQ 1413
DEI++++ G +VE+G LL
Sbjct: 545 ADEIVVVEDGIIVERGTHSELLA 567
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 6e-34
Identities = 114/586 (19%), Positives = 221/586 (37%), Gaps = 79/586 (13%)
Query: 276 AYGYPY----ICLGLLKVVNDSIGFAGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTS 329
P+ I G+ ++N + LL L+ F + L + + +
Sbjct: 18 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVL--LWMPLVVIGLM 75
Query: 330 ILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRT 389
IL+ S+ +S + K+ ++ ++ + + +A + S G + + ++ D++
Sbjct: 76 ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSE-- 133
Query: 390 VNLANSFHDAWSLPFQ-----IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
+A+S A + IG+ + + Y + + I ++L P+ +++
Sbjct: 134 -QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI-----ILVVLAPIVSIAIRVVSK 187
Query: 445 ATEKMMKQKDERI----RRTGEILTHIRTLKMYGWEQI----FSSWLMKTRSSEVKHLST 496
+ K + ++L + + ++G +++ F K R +K +S
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
D + + F + L A + + +L+ PL S V
Sbjct: 248 SSISDPIIQLIASLALAF--VLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 305
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS----NFNSKDMAVIMQDAT 612
+ + L L + + E ++ + L F
Sbjct: 306 AQFQRGMAACQTLFAIL---DSEQEKDEGKRVIDRATGDLEFRNVTFT------------ 350
Query: 613 CSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
Y E L ++L +P G VA++G GSGKS++ + I + G I G
Sbjct: 351 ---YPGREVP---ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
Query: 673 -------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDIS 717
+A V Q + + T+ +NI + + Y + E + I+
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 464
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LS 774
M G IGE GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I L
Sbjct: 465 KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 775 NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T ++ H + I AD +VV++ G + G+ ++L
Sbjct: 525 EL-----QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 279 bits (715), Expect = 2e-81
Identities = 119/512 (23%), Positives = 228/512 (44%), Gaps = 53/512 (10%)
Query: 942 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 1001
++L + ++ ++ S +++ L ++ PV FFDQ G +L+R
Sbjct: 69 FMILGLM-FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSR 127
Query: 1002 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIYS 1053
+ D + + L ++ ++G+ ++ + L+++ P F+
Sbjct: 128 ITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187
Query: 1054 KLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1113
+ + R+ + + S + + L G + ++ ++ +F + ++
Sbjct: 188 RFRKISRNMQTAMGHVTSSA--------EQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239
Query: 1114 ------------TSYSELTASLWLSLRLQVGLALSYAAPI--------VSLLGNFL---- 1149
++ ASL L L + S A + S + +
Sbjct: 240 QTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLK 299
Query: 1150 ---SSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP 1206
S +E ++ M + + + MD+ E G G ++ ++VT Y+
Sbjct: 300 ALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAER---VNGEVDVKDVTFTYQGKEK 356
Query: 1207 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1266
AL ++F+I G V +VGR+G+GKS+I N R + G I +DG ++ + + +LR
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 1267 GRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVK 1321
FA+V Q+ LF ++ +N+ + +I + H E +E + GL+T +
Sbjct: 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTRE-QIEQAARQAHAMEFIENMPQGLDTVIG 475
Query: 1322 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITI 1381
E+G S S GQRQ + +ARALL+ + VL LDE T+ +D ++ +Q A+ K TV+ I
Sbjct: 476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535
Query: 1382 AHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
AHR+ST+ DEIL++D G ++E+G LL
Sbjct: 536 AHRLSTIEQADEILVVDEGEIIERGRHADLLA 567
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-32
Identities = 107/557 (19%), Positives = 209/557 (37%), Gaps = 67/557 (12%)
Query: 297 AGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSI 354
LL L+ F S L +L + ++ S+ LS + + +
Sbjct: 43 YMISLLKPLLDEGFGNAESNFL--RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQM 100
Query: 355 MTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQ-----IGVA 409
++ +++ + + S G + + ++ D++ +A + A + IG+
Sbjct: 101 RRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE---QVAGATSRALVSIVREGASIIGLL 157
Query: 410 LYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI----RRTGEILT 465
+ + + + + I++ PV + + ++ K+ + + ++L
Sbjct: 158 TLMFWNSWQLSL-----VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLK 212
Query: 466 HIRTLKMYGWEQI----FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFG 521
+ + YG +++ F R +K +S + D + +
Sbjct: 213 GHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFA--VLFLA 270
Query: 522 LFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581
+ +L + L+ PL + V + + + L +
Sbjct: 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLM-------- 322
Query: 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVA 641
+ + NG + V ++D T + Y E+ L+ VS +P+G VA
Sbjct: 323 -----DLETERDNGKYEAERVNGEVDVKDVTFT-YQGKEKP---ALSHVSFSIPQGKTVA 373
Query: 642 VIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTI 688
++G GSGKS++ N + GSI G A V Q + + TI
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Query: 689 RDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746
+NI + Y + + + I M G IGE G +LSGGQR R+A+AR
Sbjct: 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493
Query: 747 AVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMV 803
A+ + + +LD+ SA+D + R I L KT ++ H + I AD +
Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDEL-----QKNKTVLVIAHRLSTIEQADEI 548
Query: 804 VVMDKGQVKWIGSSADL 820
+V+D+G++ G ADL
Sbjct: 549 LVVDEGEIIERGRHADL 565
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 275 bits (707), Expect = 2e-80
Identities = 113/526 (21%), Positives = 223/526 (42%), Gaps = 49/526 (9%)
Query: 927 DTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986
T + + T + L IF + + +R + + S + + L +
Sbjct: 49 ALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS 108
Query: 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLL 1043
F+ G++++R +D+ D + L + + + ++ ++ ++ V L
Sbjct: 109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAAL 168
Query: 1044 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1103
+ PF+ + + + R+L R S + + + E + G S +++F ED
Sbjct: 169 FIFPFYILTV---YVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKN 225
Query: 1104 FKEHVVLYQRTSYSELTASLWLSLRLQVGLALSYAAPIV--------------------S 1143
F + + + + + + + I
Sbjct: 226 FDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVG 285
Query: 1144 LLGNF------LSSFTET-EKEMVSLERVLEYMDVPQE--ELCGYQSLSPDWPFQGLIEF 1194
L L + T + S++RV + +D + G Q + QG I+
Sbjct: 286 YLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEI---KQGRIDI 342
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
+V+ +Y + L DIN +IE G V VG +G GKS+++N + R + GQIL+DG
Sbjct: 343 DHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402
Query: 1255 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN-----LDPFHMNDDLKIWSVLEKCHVKE 1309
NI + LR + +V Q LF ++++N D ++ + + +
Sbjct: 403 HNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVEAAKMANAHD 458
Query: 1310 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+ + G +T V E G+ S GQ+Q + +AR L + +L LDE T+ +D ++ SI+Q
Sbjct: 459 FIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518
Query: 1368 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
A+ K T + +AHR+ST+ + D+I+++++GH+VE G + L+
Sbjct: 519 ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 5e-27
Identities = 103/568 (18%), Positives = 203/568 (35%), Gaps = 75/568 (13%)
Query: 294 IGFAGPLLLNKLIKFLQQGSGHLDGYV-------LAIALGLTSILKSFFDTQYSFHLSKL 346
I PLL+ I + + IAL + I++ + +
Sbjct: 29 IPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWT 88
Query: 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQ 405
K+ I +Y + + G++ + + D ++T + + W
Sbjct: 89 SNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCIT 148
Query: 406 -IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI----RRT 460
I + + VK + + P + K+ +++ + +
Sbjct: 149 IIIALSIMFFLDVKLTL-----AALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFL 203
Query: 461 GEILTHIRTLKMYGWEQI----FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 516
E + I +K + E F + +KH Y A P +
Sbjct: 204 HERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPII-- 261
Query: 517 LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 576
+ G + + + + + L PL L +F S+ R+ + +
Sbjct: 262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI--- 318
Query: 577 EYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPK 636
+ ++++ + + + + + + Y + + +L ++L + K
Sbjct: 319 DEDYDIKNGVGAQP-----IEIKQGR---IDIDHVSFQ-Y---NDNEAPILKDINLSIEK 366
Query: 637 GSLVAVIGEVGSGKSSLLNSILGEMM----LTHGSIHASG-------------SIAYVPQ 679
G VA +G G GKS+L+N I +T G I G I V Q
Sbjct: 367 GETVAFVGMSGGGKSTLINLI----PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ 422
Query: 680 VPWILSGTIRDNILFGKNYDPQ-SYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLS 735
+ S T+++NIL G+ P + E ++A + I + G +GE+GV LS
Sbjct: 423 DNILFSDTVKENILLGR---PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTH 792
GGQ+ RL++AR + I +LD+ SA+D + I L +T ++ H
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD-----RTTLIVAH 534
Query: 793 NVQAISAADMVVVMDKGQVKWIGSSADL 820
+ I+ AD +VV++ G + G+ +L
Sbjct: 535 RLSTITHADKIVVIENGHIVETGTHREL 562
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 4e-69
Identities = 141/533 (26%), Positives = 230/533 (43%), Gaps = 93/533 (17%)
Query: 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 1000
Y+++L S L ++ S ++ L K+ PV FFD+TP G I++
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIIS 138
Query: 1001 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIY 1052
R +D+ I++ L + + V L G +++ V V L +VP +
Sbjct: 139 RVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS 198
Query: 1053 SKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQ 1112
S+ + ++ R L +L+ + E ++G + I+ F E+ M KF +
Sbjct: 199 SQTRKYFYENQRVLGQLNGI--------IEEDISGLTVIKLFTREEKEMEKFDRVNESLR 250
Query: 1113 RTSYSELTASLWLSLRLQVGLALSYAAPIVSLLGNFL-----------SSF--------- 1152
+ S L + + L +A ++S G +L ++F
Sbjct: 251 KVGTKAQIFSGVLPPLMNMVNNLGFA--LISGFGGWLALKDIITVGTIATFIGYSRQFTR 308
Query: 1153 ---------TETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKP 1203
+ + S ER+ E +D+ +E+ +G IEF+NV Y
Sbjct: 309 PLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELR--EVRGEIEFKNVWFSYDK 366
Query: 1204 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1263
P L DI F I+ G +V +VG TG+GK++I+N L R + GQILVDG++I
Sbjct: 367 KKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS 425
Query: 1264 DLRGRFAVVPQSPFLFEGSLRDNL--------DPFHMNDDLKIWSVLEKCHVKEEVEAV- 1314
LR +V Q LF ++++NL D EE++
Sbjct: 426 SLRSSIGIVLQDTILFSTTVKENLKYGNPGATD--------------------EEIKEAA 465
Query: 1315 --------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360
G ET + ++G S GQRQL+ + RA L + K+L LDE T+NVD +
Sbjct: 466 KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525
Query: 1361 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
T +Q A+ +G T I IAHR++T+ N D I++L G +VE G L+Q
Sbjct: 526 TEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 3e-14
Identities = 118/599 (19%), Positives = 213/599 (35%), Gaps = 130/599 (21%)
Query: 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFF 335
+ + I + + V+ +G P L+ K I L + I + L S
Sbjct: 35 HTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIY-ALTSLL 93
Query: 336 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD---------------GEIQT 380
+ L+ IM + Q ++ RL R E + G+I +
Sbjct: 94 --FW----------LQGKIMLTLSQDVVF-RL--RKELFEKLQRVPVGFFDRTPHGDIIS 138
Query: 381 FMSVDTDRTVNLANSFHDAWSLPFQ-----IGVALYLLYTQVKFAFVSGLAITILLIPVN 435
+ D D N+ N ++ F G + + V + +T+ ++P+
Sbjct: 139 RVINDVD---NINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL-----VTLSIVPLT 190
Query: 436 KWIANLIANATEKM-MKQKDERIRRTG---EILTHIRTLKMYGWEQIFSSWLMKTRSSEV 491
I ++++ T K + + + G E ++ + +K++ E+ + E
Sbjct: 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREE---------KEMEK 241
Query: 492 KHLSTRKYLDAWC--VFFWATTP---TLFSLFTFGLFALMGHQLDAAMVFT--CLALF-- 542
F P + + F L + G L + T +A F
Sbjct: 242 FDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIG 301
Query: 543 --NSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFN 600
PLN N + A S R+ L + + E + G
Sbjct: 302 YSRQFTRPLNELSNQFNMIQMALASAERIFEIL---DLEEEKDDPDAVELREVRG----- 353
Query: 601 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 660
+ ++ S Y +++ VL ++ + G VA++G GSGK++++N +
Sbjct: 354 ----EIEFKNVWFS-Y----DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL--- 401
Query: 661 MM----LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQ-S 702
M + G I G SI V Q + S T+++N+ +G P +
Sbjct: 402 -MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN---PGAT 457
Query: 703 YSETLKACTL-DVD--ISLMVGG-DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 758
E +A L D I + G + + + G +LS GQR LA+ RA I +LD
Sbjct: 458 DEEIKEAAKLTHSDHFIKHLPEGYET-VLTDNGEDLSQGQRQLLAITRAFLANPKILILD 516
Query: 759 DVLSAVDA------QVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
+ S VD Q A M M KT I+ H + I AD+++V+ G++
Sbjct: 517 EATSNVDTKTEKSIQAA--------MWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEI 567
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 218 bits (559), Expect = 1e-64
Identities = 87/255 (34%), Positives = 130/255 (50%), Gaps = 33/255 (12%)
Query: 1188 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1247
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1248 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1304
GQ+L+DG ++ LR + VV Q L S+ DN+ +P M+
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSV---------- 112
Query: 1305 CHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1349
E+V G T V E G S GQRQ I +ARAL+ + K+L
Sbjct: 113 ----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 1350 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1409
DE T+ +D ++ ++ + CKG TVI IAHR+STV N D I++++ G +VEQG +
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHK 228
Query: 1410 TLLQDECSVFSSFVR 1424
LL + S++S +
Sbjct: 229 ELLSEPESLYSYLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ + V+L+ ++L + +G ++ ++G GSGKS+L I + +G + G
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGD 723
+ V Q +L+ +I DNI S + + A L IS + G
Sbjct: 78 PNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+GE+G LSGGQR R+A+ARA+ + I + D+ SA+D + I+ N M
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICK 193
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T I+ H + + AD ++VM+KG++ G +L
Sbjct: 194 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 3e-64
Identities = 84/275 (30%), Positives = 137/275 (49%), Gaps = 11/275 (4%)
Query: 1145 LGNFLSSFTETEKEMVSLERVLEYMDVPQE--ELCGYQSLSPDWPFQGLIEFQNVTMRYK 1202
+ + +E + + + E +L G L +G IEF+NV Y
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQ---KGRIEFENVHFSYA 64
Query: 1203 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1262
L D++FT+ G + +VG +GAGKS+IL LFR I G I +DG +I
Sbjct: 65 DGRET-LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 1263 RDLRGRFAVVPQSPFLFEGSLRDNLD--PFHMNDDLKIWSVLEKCHVKEEVEAV--GLET 1318
LR VVPQ LF ++ DN+ +D ++ + + + + + A G T
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGND-EVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 1319 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTV 1378
V E G+ S G++Q + +AR +LK+ ++ LDE T+ +D +Q +++ C T
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTT 242
Query: 1379 ITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
I +AHR+STV+N D+IL++ G +VE+G + LL
Sbjct: 243 IVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 65/305 (21%), Positives = 117/305 (38%), Gaps = 40/305 (13%)
Query: 545 LISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS-YISNGLSNFNSKD 603
+ ++ FI + + L + + E++ + G F +
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLL---KEETEVKDLPGAGPLRFQKGRIEFENVH 60
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
+ Y + L VS + G +A++G G+GKS++L + +
Sbjct: 61 FS----------Y----ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI 106
Query: 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC 710
+ G I G I VPQ + + TI DNI +G+ E A
Sbjct: 107 SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT--AGNDEVEAAA 164
Query: 711 ---TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
+ I G +GE+G+ LSGG++ R+A+AR + I +LD+ SA+D
Sbjct: 165 QAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224
Query: 768 VARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLY 825
R I ++ + +T I+ H + + AD ++V+ G + G L +Y
Sbjct: 225 NERAIQAS--LAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVY 282
Query: 826 SGFWS 830
+ W
Sbjct: 283 ADMWQ 287
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 6e-64
Identities = 115/427 (26%), Positives = 203/427 (47%), Gaps = 51/427 (11%)
Query: 1028 LGIAVVLSYVQVFFL-LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLN 1086
+ I V LS V +F + +++ F ++ K +R ++ V R E L
Sbjct: 159 VSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVR--------ENLL 210
Query: 1087 GSSTIRAFKSEDYFMAKFKEHVVLYQRTS------------------YSELTASLWLSLR 1128
G +RAF+ E+Y F++ +R+ + A LW
Sbjct: 211 GVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGV 270
Query: 1129 ------LQVG--LAL-SYAAPI---VSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEEL 1176
+++G +A +Y I + ++GN L+ + S +RVLE ++
Sbjct: 271 LVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIV---RASASAKRVLEVLNEKPAIE 327
Query: 1177 CGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL 1236
+L+ +G + F+NV RY + L +NF+++ G+ V ++G TG+GKS+++
Sbjct: 328 EADNALALP-NVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 1237 NALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMN 1293
N + RL G++ VD L++ ++DLRG + VPQ LF G++++NL
Sbjct: 387 NLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE-DAT 445
Query: 1294 DDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351
DD +I + + + + ++ G ++ V+ G +FS GQ+Q + +ARAL+K KVL LD
Sbjct: 446 DD-EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD 504
Query: 1352 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1411
+CT++VD T + + + KG T I +I T L D+IL+L G + G + L
Sbjct: 505 DCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
Query: 1412 LQDECSV 1418
L+ C
Sbjct: 565 LEH-CKP 570
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-31
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672
Y N + VL+ V+ + GSLVAV+GE GSGKS+L+N I + G +
Sbjct: 351 YFENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
Query: 673 ----------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLK-----ACTLDVDIS 717
I+ VPQ + SGTI++N+ +G+ + + + A D I
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR---EDATDDEIVEAAKIAQIHDF-II 463
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
+ G + + G N SGGQ+ RL++ARA+ + +LDD S+VD + IL
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG-- 521
Query: 778 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ + T + T + AD ++V+ +G+V G+ +L
Sbjct: 522 LKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 1e-62
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 7/228 (3%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
++ ++V Y L DI+F + + + G +G GKS+I + L R G+I
Sbjct: 1 MLSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHV 1307
+DG I N + + R + V Q + G++R+NL D+ +W VL+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDE-DLWQVLDLAFA 118
Query: 1308 KEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
+ VE + L T V E G+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 1366 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
Q A+ S KG T + IAHR+ST+++ D+I ++ G + G L+
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 6e-29
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMML--------TH 665
++ +L +S S++A G G GKS++ + + GE+ + +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 666 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGG 722
+ + I +V Q I++GTIR+N+ +G D + + + L + M
Sbjct: 72 ENWRSQ--IGFVSQDSAIMAGTIRENLTYGLEGDY-TDEDLWQVLDLAFARSFVENMPDQ 128
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMG 779
+GE+GV +SGGQR RLA+ARA I MLD+ +++D++ + L +
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL--- 185
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS--LYSGFWS 830
M +T ++ H + I AD + ++KGQ+ G +L + LY+ + S
Sbjct: 186 --MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 8e-57
Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 7/231 (3%)
Query: 1188 FQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1245
F IEF +V Y + + L INF I GT +VG TG+GKS+I L+R
Sbjct: 14 FGVNIEFSDVNFSYPKQTNHRT-LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 1246 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEK 1304
G I + G N+ +R +VPQ LF +++ N+ ++ D ++ +
Sbjct: 73 -EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKS 131
Query: 1305 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
+ + +EA+ +T V G+ S G+RQ I +AR LLK K++ DE T+++D++T
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 1363 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
+ Q A+ K T+I IAHR+ST+ + + I++L+ G +VE+G + LL+
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL------GEMM--------LT 664
++ + L ++ +P G+ A++G GSGKS++ + G++
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYN 87
Query: 665 HGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC---TLDVDISLMVG 721
SI + I VPQ + + TI+ NIL+GK + E +KA L I +
Sbjct: 88 RNSIRSI--IGIVPQDTILFNETIKYNILYGK--LDATDEEVIKATKSAQLYDFIEALPK 143
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+G KG+ LSGG+R R+A+AR + I + D+ S++D++ +
Sbjct: 144 KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA--VEDL 201
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
+T I+ H + IS+A+ +++++KG++ G+ DL Y+ W+
Sbjct: 202 RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 2e-54
Identities = 80/258 (31%), Positives = 119/258 (46%), Gaps = 32/258 (12%)
Query: 1187 PFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1244
+GL++FQ+V+ Y P+ P L + FT+ G +VG G+GKS++ L L
Sbjct: 12 NMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1245 ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1304
GG++L+DG ++ L + A V Q P LF S R+N I L +
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN-----------IAYGLTR 119
Query: 1305 CHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1349
EE+ AV G +T V E+G S GQRQ + LARAL++ ++L
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 1350 LDECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGN 1407
LD T+ +DA +Q + S E TV+ I ++S IL L G + EQG
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 1408 PQTLLQDECSVFSSFVRA 1425
L++ + S V A
Sbjct: 240 HLQLMERG-GCYRSMVEA 256
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 2e-26
Identities = 58/219 (26%), Positives = 92/219 (42%), Gaps = 33/219 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMM--------LTHGSIHA 670
VL ++ L G + A++G GSGKS++ + G+++ H +H
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH- 92
Query: 671 SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYI 727
+A V Q P + + R+NI +G P + E IS G +
Sbjct: 93 -TQVAAVGQEPLLFGRSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA------QVARWILSNAIMGPH 781
GE G LSGGQR +ALARA+ + +LD+ SA+DA Q L + P
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL---LYES---PE 204
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T +L T + A ++ + +G V G+ L
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 34/240 (14%)
Query: 1191 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+I+ +NV + K +L +IN + G V I+G G+GK+++L A+ L P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLLP-YSG 58
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD------LKIWS 1300
I ++G+ + R +R P + + D LK
Sbjct: 59 NIFINGMEV-----RKIRNYIRYSTNLPEAY---------EIGVTVNDIVYLYEELKGLD 104
Query: 1301 VLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+ E ++A+ L E ++ S GQ L+ + AL +++ LDE NVDA
Sbjct: 105 ---RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161
Query: 1360 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ-GNPQTLLQDECS 1417
++ I G I + H + + + G+ ++ + LL+
Sbjct: 162 ARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIV 219
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 3e-23
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 30/206 (14%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 672
+ + + L ++L + G V ++G GSGK++LL +I G ++ G+I +G
Sbjct: 12 SGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK 69
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDM 724
I Y +P + + T+ D + K D + E LK +
Sbjct: 70 IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK----------ALKLGE 119
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
+ K LS GQ + + A+ +I LD+ VDA R ++S I
Sbjct: 120 EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR-RHVISRYI---KEYG 175
Query: 785 KTRILCTHNVQ-AISAADMVVVMDKG 809
K IL TH + + G
Sbjct: 176 KEGILVTHELDMLNLYKEYKAYFLVG 201
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-31
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1247
+++ + + Y A L IN I+ G I+G G GKS++ N + + +
Sbjct: 7 ILKVEELNYNYSDGTHA-LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---S 62
Query: 1248 GQILVDGLNIINTP--VRDLRGRFAVVPQSPF--LFEGSLRDNLD----PFHMNDDLKIW 1299
G+IL D I + + LR +V Q P LF S+ D +N L
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ--DVSFGA--VNMKLPED 118
Query: 1300 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1359
+ ++ V ++ G+E + S GQ++ + +A L+ KVL LDE TA +D
Sbjct: 119 EIRKR--VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176
Query: 1360 QTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
S + + + G+T+I H I V D + ++ G ++ QGNP+ + ++
Sbjct: 177 MGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 28/221 (12%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQ 679
+ L +++ + +G + A++G G GKS+L + G + + G I I Y +
Sbjct: 18 SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK 77
Query: 680 VPW----------------ILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISL-MVG 721
+ S ++ ++ FG N E K VD +L G
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPEDEIRKR----VDNALKRTG 132
Query: 722 GDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ ++ +K LS GQ+ R+A+A + + +LD+ + +D I+ +
Sbjct: 133 --IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
L T I+ TH++ D V VM +G+V G+ ++
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 6e-31
Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 23/241 (9%)
Query: 1191 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
LI+ + K L I++ I G + + G GAGK+++LN L P G
Sbjct: 21 LIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 1249 QILVDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-----NDDLKIWSV 1301
+ + G + +R V S ++ + + ++
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 1302 L---EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
+ + + ++ VG+ ++ S G++Q + +ARAL+ +VL LDE A +D
Sbjct: 134 IDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 1359 AQT-ASILQ--NAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1414
S+L +++S + +I + H I + +IL+L G ++QG + +L
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
Query: 1415 E 1415
E
Sbjct: 254 E 254
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 45/248 (18%), Positives = 90/248 (36%), Gaps = 46/248 (18%)
Query: 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662
M + + + +L ++S + KG + G G+GK++LLN +
Sbjct: 19 HMLIQLDQIGRMK------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72
Query: 663 LTHGSIHASG---------------SIAYVPQ---VPWILSGTIRDNILFGKN-----YD 699
T G+++ G I +V + + D ++ G Y
Sbjct: 73 ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQ 132
Query: 700 PQSYSETLKACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 757
+A L V +S A + LS G++ R+ +ARA+ + +L
Sbjct: 133 DIDDEIRNEAHQLLKLVGMS-------AKAQQYIGYLSTGEKQRVMIARALMGQPQVLIL 185
Query: 758 DDVLSAVDAQVARWILSN----AIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVK 812
D+ + +D +LS + P + I TH ++ + ++++ GQ
Sbjct: 186 DEPAAGLDFIARESLLSILDSLSDSYPTL---AMIYVTHFIEEITANFSKILLLKDGQSI 242
Query: 813 WIGSSADL 820
G+ D+
Sbjct: 243 QQGAVEDI 250
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-30
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 35/242 (14%)
Query: 1192 IEFQNVTMRYKPSLPA---ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1245
IE NV+ + P AL +++ I G + + G TG+GKS++ + L + P
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEP- 59
Query: 1246 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPF--LFEGSLRD-------NLDPFHMNDDL 1296
G +L DG ++R + Q P F + D N P
Sbjct: 60 TSGDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP------- 109
Query: 1297 KIWSVLEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354
VK+ +E VGL ++F S G+++ + +A ++ +L LDE
Sbjct: 110 ---DRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 1355 ANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
+D + + L + + G TVI I+H I TV+N D +++L+ G V G L
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
Query: 1413 QD 1414
+
Sbjct: 227 EK 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 24/233 (10%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M + + + + + + L VSL + +G + V G GSGKS+LL + G +
Sbjct: 1 MRIEVVNVSHI-FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 664 THGSIHASG----------SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKAC 710
T G + G +I Q P + + D + F KN+ P + +
Sbjct: 60 TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD--RDPVPL- 116
Query: 711 TLDVDISL-MVGGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
V ++ VG D ++ LSGG++ R+A+A + H DI +LD+ L +D +
Sbjct: 117 ---VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 769 ARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+L + L KT IL +H++ I+ D VVV++KG+ + G+ +
Sbjct: 174 KTDLL-RIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 52/235 (22%), Positives = 102/235 (43%), Gaps = 28/235 (11%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+ +++ R L I+F IE G G++G GAGK++ L + L G +
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCH 1306
V G N++ P ++R + +P+ + + L + +
Sbjct: 74 VFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI------EEM 126
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
V+ E GL +K+ ++S G + + +ARAL+ + ++ LDE T+ +D A ++
Sbjct: 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 1367 NAISSECK-GMTVITIAHRISTVLNMDE-------ILILDHGHLVEQGNPQTLLQ 1413
+ + G+T++ +H NM E I ++ +G +VE G + L +
Sbjct: 187 KILKQASQEGLTILVSSH------NMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 41/221 (18%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+L +S + +G + +IG G+GK++ L I + + G + G
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88
Query: 673 SIAYVPQVP---WILSGTIRDNILF-GKNYD------PQSYSETLKACTLDVDISLMVGG 722
I+Y+P+ + G + + F Y + + L
Sbjct: 89 LISYLPEEAGAYRNMQG--IEYLRFVAGFYASSSSEIEEMVERATEIAGLG--------- 137
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
I ++ S G +L +ARA+ + +LD+ S +D AR + +
Sbjct: 138 --EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR-KILKQASQ 194
Query: 783 LQKTRILCTHN---VQAISAADMVVVMDKGQVKWIGSSADL 820
T ++ +HN V+ + D + ++ G + G+ +L
Sbjct: 195 EGLTILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 19/218 (8%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+E +++++ Y L I TIE G V G G GK+++L + G+I+
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
+G+ I ++G+ +P+ + S+ D L L V + + +
Sbjct: 68 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLK-AVA--SLYGVKVNKN-EIMDA 118
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
+E+V + K+ G S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 119 LESVEVLDLKKKLG-ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 177
Query: 1371 SECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQG 1406
K G+ +I+ +S D L
Sbjct: 178 EILKEKGIVIISSREELSYC---DVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 3e-15
Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 29/202 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 675
VL ++++ + KG++V G G GK++LL +I + G I +G I
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81
Query: 676 YVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
++P+ + ++ D + G + + L++ + D+ +G
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DLKKKLG-------- 132
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
LS G R+ LA + ++IY+LDD + A+D +L +I+ + I+
Sbjct: 133 ---ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVII 188
Query: 790 CTHNVQAISAADMVVVMDKGQV 811
+ + D+ + K
Sbjct: 189 SSREELSY--CDVNENLHKYST 208
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 52/249 (20%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+++ Q+V L ++ + G + +VG GAGKS++L + +T G I
Sbjct: 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 56
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE------- 1303
G + L A + Q PF V
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTP----------PFAT-------PVWHYLTLHQH 99
Query: 1304 ----KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL-------KSSKVLCLDE 1352
+ + A+ L+ + S S G+ Q + LA +L + ++L LDE
Sbjct: 100 DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159
Query: 1353 CTANVD-AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVEQG 1406
++D AQ +++ + + +G+ ++ +H LN +L G ++ G
Sbjct: 160 PMNSLDVAQQSALDKILSALSQQGLAIVMSSHD----LNHTLRHAHRAWLLKGGKMLASG 215
Query: 1407 NPQTLLQDE 1415
+ +L
Sbjct: 216 RREEVLTPP 224
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 47/223 (21%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L +S + G ++ ++G G+GKS+LL + G GSI +G
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 73
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
AY+ Q + + ++ + ++ A +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL------------ALDDKLG 121
Query: 730 KGVN-LSGGQRARLALARA-------VYHGSDIYMLDDVLSAVD----AQVARWILSNAI 777
+ N LSGG+ R+ LA + +LD+ ++++D + + + + + +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 778 MGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 819
G ++ +H++ + A ++ G++ G +
Sbjct: 182 QG-----LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 47/240 (19%), Positives = 98/240 (40%), Gaps = 41/240 (17%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+ +N+ Y + +NF + G + ++G+ G GKS++L+ L + G+I
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI- 62
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF------------HMNDDLKIW 1299
++ VPQ + + H+N
Sbjct: 63 ------------EVYQSIGFVPQFF--------SSPFAYSVLDIVLMGRSTHIN-TFAKP 101
Query: 1300 SVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
+ + ++ + L + + S GQRQLI +ARA+ K++ LDE T+ +D
Sbjct: 102 KSHDYQVAMQALDYLNLTHL-AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 1359 AQTASILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
I+ + + ++ + MTV+ H+ + V+ + ++ L+L+ + G + +L E
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ-NFKFGETRNILTSE 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP- 681
+N + Q++ L KG ++AV+G+ G GKS+LL+ +LG G I SI +VPQ
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFS 76
Query: 682 WILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISL----MVGGDMAYIGEKGVN-LS 735
+ ++ D +L G++ + K+ D +++ + + ++ ++ LS
Sbjct: 77 SPFAYSVLDIVLMGRS--THINTFAKPKS--HDYQVAMQALDYLN--LTHLAKREFTSLS 130
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV- 794
GGQR + +ARA+ + +LD+ SA+D +LS I T + TH
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
Query: 795 QAISAADMVVVMDKGQV 811
Q ++ A+ ++++K
Sbjct: 191 QVVAIANKTLLLNKQNF 207
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 6e-22
Identities = 65/265 (24%), Positives = 118/265 (44%), Gaps = 38/265 (14%)
Query: 1172 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTG 1229
+ S D + +I+ N+T + AL++++ + G G++G +G
Sbjct: 5 HHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASG 64
Query: 1230 AGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG---RFAVVPQSPFLFEG-SLRD 1285
AGKS+++ + L G +LVDG + +L + ++ Q L ++
Sbjct: 65 AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG 124
Query: 1286 NLD-PFHMNDDLKIWSVLE---KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLIC 1336
N+ P L++ + + K V E + VGL SG GQ+Q +
Sbjct: 125 NVALP------LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG-----GQKQRVA 173
Query: 1337 LARALLKSSKVLCLDECTANVDAQ-TASILQ--NAISSECKGMTVITIAHRISTVLNM-D 1392
+ARAL + KVL D+ T+ +D T SIL+ I+ G+T++ I H + V + D
Sbjct: 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICD 232
Query: 1393 EILILDHGHLVEQG-------NPQT 1410
+ ++ +G L+EQ +P+T
Sbjct: 233 CVAVISNGELIEQDTVSEVFSHPKT 257
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 54/230 (23%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
LN VSL +P G + VIG G+GKS+L+ + T GS+ G
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 673 ----SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMV 720
I + Q +LS T+ N+ K+ + +E L +V
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS----------LV 151
Query: 721 GGDMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-- 774
G +G+K NLSGGQ+ R+A+ARA+ + + D SA+D R IL
Sbjct: 152 G-----LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
Query: 775 ---NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
N +G T +L TH + + D V V+ G++ + +++
Sbjct: 207 KDINRRLG-----LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 3e-20
Identities = 54/242 (22%), Positives = 106/242 (43%), Gaps = 33/242 (13%)
Query: 1191 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1247
++ +N+ + K AL ++ ++ G I+G G+GKS+++N +
Sbjct: 7 ILRTENIVKYFGEFK-----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 61
Query: 1248 GQILVDGLNIINTPVRDL--RG--R-FAVVPQSPFLFEG-SLRDN-LDPFHMNDDLKIWS 1300
G++ + +I N +L G R F Q+P + ++ +N L + + S
Sbjct: 62 GRVYFENKDITNKEPAELYHYGIVRTF----QTPQPLKEMTVLENLLIGEICPGESPLNS 117
Query: 1301 VLEKCHVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1350
+ K + +E E + L S GQ +L+ + RAL+ + K++ +
Sbjct: 118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 177
Query: 1351 DECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1407
DE A V A + N + KG+T + I HR+ VLN D + ++ +G ++ +G
Sbjct: 178 DEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Query: 1408 PQ 1409
+
Sbjct: 237 GE 238
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 52/223 (23%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP------- 678
L+ VS+ + KG + +IG GSGKS+L+N I G + G ++ I
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 679 ------QVPWILSG-TIRDNILFGKNYDPQSYSETL--------------KACTL--DVD 715
Q P L T+ +N+L G+ +S +L KA + +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+S K LSGGQ + + RA+ + ++D+ ++ V L++
Sbjct: 143 LS-------HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG-----LAH 190
Query: 776 AIMGPHMLQKTR------ILCTHNVQAISA-ADMVVVMDKGQV 811
I + + + + ++ H + + D + VM GQ+
Sbjct: 191 DIF--NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 3e-20
Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 19/232 (8%)
Query: 1196 NVTMRYKPSLPAALHDINF-TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
V RYK + T + T +G++G+ G GK+++L L G +
Sbjct: 4 EVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NS 58
Query: 1255 LNIINTPVRDLRG-RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH------- 1306
+ ++ RG + + L+ ++ K
Sbjct: 59 KVGKDEVLKRFRGKEIYNYFKELY--SNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 1307 --VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364
E E + + + S G Q + +A +LL+ + V D+ ++ +D +
Sbjct: 117 GKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 1365 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
+ AI K VI + H + + + D I I+ V ++
Sbjct: 177 MAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARV 228
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 2e-19
Identities = 37/210 (17%), Positives = 78/210 (37%), Gaps = 28/210 (13%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
L N + G +GI+G G GK++ L G + + +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL---------- 332
Query: 1268 RFAVVPQSPFL-FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETFVKESGI 1325
+ PQ F ++G+++ L ++ ++ EEV + + L ++ +
Sbjct: 333 --SYKPQRIFPNYDGTVQQYL------ENASKDALSTSSWFFEEVTKRLNLHRLLESNVN 384
Query: 1326 SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITI 1381
S G+ Q + +A L K + + LD+ ++ +D A ++ + I
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFII 442
Query: 1382 AHRISTVLNM-DEILILDHGHLVEQGNPQT 1410
H +S + D I++ G + G +
Sbjct: 443 DHDLSIHDYIADRIIVFK-GEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-15
Identities = 41/205 (20%), Positives = 81/205 (39%), Gaps = 29/205 (14%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVP 681
+ L + +G ++ ++G G GK++ ++GE+ GS+ ++Y PQ
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 682 WI-----LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLS 735
+ + + + + + E K L L+ E V +LS
Sbjct: 340 FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH---RLL---------ESNVNDLS 387
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRILCT 791
GG+ +L +A + +D+Y+LD S +D VA+ I + +
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT----RERKAVTFIID 443
Query: 792 HNVQAISA-ADMVVVMDKGQVKWIG 815
H++ AD ++V KG+ + G
Sbjct: 444 HDLSIHDYIADRIIVF-KGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 39/213 (18%)
Query: 627 LNQVSLCLPK-GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----------HASGS- 673
L PK +++ V+G+ G GK+++L + GE++ G G
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGG-----DM 724
I + + I+ K + S+ LK + +D +M
Sbjct: 74 IYNYFKEL----YSNELKIVH-KIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNM 128
Query: 725 AYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ K LSGG RL +A ++ +D+Y+ D S +D + + AI L
Sbjct: 129 TNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA-KAI---REL 184
Query: 784 QKTR--ILCTHN---VQAISAADMVVVMDKGQV 811
K + I+ H+ + + D++ ++
Sbjct: 185 LKNKYVIVVDHDLIVLDYL--TDLIHIIYGESS 215
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 5e-20
Identities = 44/240 (18%), Positives = 80/240 (33%), Gaps = 26/240 (10%)
Query: 1187 PFQGL-------IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1239
PF + +VT RY + + T G +G+VG G GKS+ L L
Sbjct: 66 PFDAIQIINLPTNLEAHVTHRYSAN--SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKIL 123
Query: 1240 FRLTPICGGQILV-----------DGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNL 1287
G+ G + N + L + + ++
Sbjct: 124 AGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183
Query: 1288 DPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346
L++ E VK ++ + LE +K S G+ Q + + ++ +
Sbjct: 184 VQKVGELLKLRMEKSPED--VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEAD 241
Query: 1347 VLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1404
V DE ++ +D + I S VI + H +S + + D + I+ V
Sbjct: 242 VYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-19
Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 31/214 (14%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
L+ + ++G G GK++++ L GQ + V
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQ 420
Query: 1268 RFAVVPQSPF--LFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1325
+ A LF +R D+ V+ + ++ + +
Sbjct: 421 KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDV--------------VKPLRIDDIIDQEVQ 466
Query: 1326 SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITI 1381
S G+ Q + + AL + + +DE +A +D + +++ I T +
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIV 524
Query: 1382 AHRISTVLNM-DEILILDHGHLVE--QGNPQTLL 1412
H + D++++ + P++LL
Sbjct: 525 EHDFIMATYLADKVIVFEGIPSKNAHARAPESLL 558
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-18
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW- 682
+ VLN ++ ++GE G+GK++L+ + G + G +++ PQ
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 683 --------ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-N 733
+ IR L +PQ ++ +K +D ++ ++ V +
Sbjct: 425 KFPGTVRQLFFKKIRGQFL-----NPQFQTDVVKPLRID---DII---------DQEVQH 467
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTH 792
LSGG+ R+A+ A+ +DIY++D+ + +D++ R I S I + +KT + H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ-RIICSKVIRRFILHNKKTAFIVEH 526
Query: 793 NVQAISA-ADMVVVMDKGQVK 812
+ + AD V+V + K
Sbjct: 527 DFIMATYLADKVIVFEGIPSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 7e-10
Identities = 38/230 (16%), Positives = 71/230 (30%), Gaps = 58/230 (25%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------- 673
N G ++ ++G G GKS+ L + G+ G
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 674 ----------------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711
YV +P + G ++ + + E +K
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQ-KVGELLKLRMEKSPEDVKRYI 206
Query: 712 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQ 767
+ + ++ I + LSGG+ R A+ + +D+YM D+ S +D
Sbjct: 207 KILQLENVLK---RDIEK----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259
Query: 768 VARWILSNAIMGPHMLQ---KTRILCTHN---VQAISAADMVVVMDKGQV 811
A+ I S L K I H+ + + +D V ++
Sbjct: 260 AAQIIRS--------LLAPTKYVICVEHDLSVLDYL--SDFVCIIYGVPS 299
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-18
Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 27/226 (11%)
Query: 1196 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG-----GQ 1249
+ RY + L+ + ++ G VGIVG G GKS+ + L +L P
Sbjct: 26 DCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 1250 ILVDGLNIINTPVRDLR---GRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSVL 1302
++ + G V + ++ +L P + + LK
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV-------DLIPKAVKGKVIELLKKADET 136
Query: 1303 EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
K ++E V+A+ LE ++ S G+ Q + +A ALL+++ DE ++ +D +
Sbjct: 137 GK--LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194
Query: 1363 SILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
AI +G +V+ + H ++ + + D I ++ +G G
Sbjct: 195 LNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV-YGEPGVYG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 3e-18
Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 34/208 (16%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
L I+ G +GIVG G GK++ + L + G+I D
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------------- 347
Query: 1268 RFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KIWSVLEKCHVKEEV-EAVGLETFVKES 1323
V + ++ D +L S L K E+ + +G+
Sbjct: 348 --TVAYKPQYIK-------ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDRE 398
Query: 1324 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVI 1379
S G+ Q + +A LL+ + + LDE +A +D + +++ + T +
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTAL 456
Query: 1380 TIAHRISTVLNM-DEILILDHGHLVEQG 1406
+ H + + + D +++ + G + G
Sbjct: 457 VVEHDVLMIDYVSDRLMVFE-GEPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-15
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---- 679
+ L + KG ++ ++G G GK++ + + G T G I ++AY PQ
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA 358
Query: 680 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-N 733
V +LS + +E LK + L ++ V
Sbjct: 359 DYEGTVYELLSKIDASKLN-----SNFYKTELLKPLGII---DLY---------DREVNE 401
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRIL 789
LSGG+ R+A+A + +DIY+LD+ + +D V+R + + + +KT ++
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEK---NEKTALV 457
Query: 790 CTHNVQAISA-ADMVVVMDKGQVK 812
H+V I +D ++V + K
Sbjct: 458 VEHDVLMIDYVSDRLMVFEGEPGK 481
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 53/218 (24%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
N + + +G +V ++G G+GKS+ + + G+++ + S
Sbjct: 33 VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGN 92
Query: 673 ------------SIAYVPQ------VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
I V + +P + G + + + K + E +K +
Sbjct: 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVK----AL 146
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
++ ++ I LSGG+ R+A+A A+ + Y D+ S +D +
Sbjct: 147 ELENVLE---REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA- 198
Query: 775 NAIMGPHMLQ---KTRILCTHN---VQAISAADMVVVM 806
AI L K+ ++ H+ + + +D++ V+
Sbjct: 199 RAI---RRLSEEGKSVLVVEHDLAVLDYL--SDIIHVV 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 84.8 bits (211), Expect = 3e-18
Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 62/256 (24%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
++E Q++ + Y A+ I+ + G V ++G GAGK++ L+A+ L G+I
Sbjct: 6 VLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1251 LVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1308
+ +G +I N P + A+VP+ +F ++ +NL + ++ +K +K
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL-------MMGAYNRKDKEGIK 116
Query: 1309 EEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECT--- 1354
++E + F +KE SG G++Q++ + RAL+ K+L +DE +
Sbjct: 117 RDLEWI-FSLFPRLKERLKQLGGTLSG-----GEQQMLAIGRALMSRPKLLMMDEPSLGL 170
Query: 1355 ------------ANVDAQTASIL---QNAISSECKGMTVITIAHRISTVLNMDEILILDH 1399
++ + +IL QNA+ + + +AH +L+
Sbjct: 171 APILVSEVFEVIQKINQEGTTILLVEQNALGA-------LKVAHY---------GYVLET 214
Query: 1400 GHLVEQGNPQTLLQDE 1415
G +V +G LL +E
Sbjct: 215 GQIVLEGKASELLDNE 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 51/227 (22%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+ + L +P+G +V +IG G+GK++ L++I G + G I +G
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 674 --IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY---- 726
IA VP+ I T+ +N++ G +Y+ K + D+ + +
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMG------AYNRKDKE-GIKRDL------EWIFSLFP 127
Query: 727 -----IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV---LS-AVDAQVARWILSNAI 777
+ + G LSGG++ LA+ RA+ + M+D+ L+ + ++V I
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 778 MGPHML---QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821
G +L Q A+ A V++ GQ+ G +++L
Sbjct: 188 EGTTILLVEQNAL-------GALKVAHYGYVLETGQIVLEGKASELL 227
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 5e-18
Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 27/227 (11%)
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG-----G 1248
++ RY + A + ++ G VGIVG G GK++ + L +L P
Sbjct: 95 EDCVHRYGVN--AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 1249 QILVDGLNI--INTPVRDLR-GRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSV 1301
++ + L+ G V + ++ +L P + + LK
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-------DLLPKAVKGKVRELLKKVDE 205
Query: 1302 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1361
+ K +E V+ + LE + S G+ Q + +A ALL+ + DE ++ +D +
Sbjct: 206 VGK--FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 1362 ASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+ I +G V+ + H ++ + + D I ++ +G G
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV-YGEPGVYG 309
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 39/225 (17%), Positives = 81/225 (36%), Gaps = 37/225 (16%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
L+E+ + Y L I G +GIVG G GK++ + L + G++
Sbjct: 357 LVEYPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KIWSVLEKCHV 1307
D V + ++ + +L S L
Sbjct: 414 EWDL---------------TVAYKPQYI-------KAEYEGTVYELLSKIDSSKLNSNFY 451
Query: 1308 KEEV-EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1362
K E+ + +G+ + S G+ Q + +A LL+ + + LDE +A +D +
Sbjct: 452 KTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 1363 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1406
+++ + T + + H + + + D +++ + G G
Sbjct: 512 RAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 35/206 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---- 679
+ L + KG ++ ++G G GK++ + + G T G + ++AY PQ
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKA 428
Query: 680 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734
V +LS + +E LK + V +L
Sbjct: 429 EYEGTVYELLSKIDSSKLN-----SNFYKTELLKPLGIIDLYDRNVE-----------DL 472
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRILC 790
SGG+ R+A+A + +DIY+LD+ + +D V+R I +KT ++
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM----EKNEKTALVV 528
Query: 791 THNVQAISA-ADMVVVMDKGQVKWIG 815
H+V I +D ++V + G+ G
Sbjct: 529 EHDVLMIDYVSDRLIVFE-GEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 41/164 (25%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS----------- 671
N + + G +V ++G G+GK++ + + G+++ + S
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 672 -----------GSIAYVPQ------VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
G I V + +P + G +R+ L K + + E +K ++
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LLKKVDEVGKFEEVVK----EL 216
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 758
++ ++ + + LSGG+ R+A+A A+ + Y D
Sbjct: 217 ELENVLD---RELHQ----LSGGELQRVAIAAALLRKAHFYFFD 253
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 4e-16
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 57/231 (24%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
VLN +SL L G ++ +IG G GK++LL + G G I SG
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 673 ---SIAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG- 721
+ Y+ Q G T+ NI +G ++ + ++ L + G
Sbjct: 78 RERRLGYLVQ-----EGVLFPHLTVYRNIAYGLGNGKGRTAQERQR----IEAMLELTGI 128
Query: 722 GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWILSN 775
++A Y E LSGGQ+ R ALARA+ ++ +LD+ SA+D Q+ +++
Sbjct: 129 SELAGRYPHE----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA- 183
Query: 776 AIMGPHMLQK----TRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 820
+ + + +H+ + A+ AD + VM +G++ S +L
Sbjct: 184 -------ALRANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 4e-13
Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 74/259 (28%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+ +++ ++ + L+DI+ +++ G + I+G +G GK+++L L G+I
Sbjct: 4 ALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1251 LVDGLNIINTPVRDL---RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE---- 1303
+ G I + +L R + Q LF P H+ +V
Sbjct: 62 SLSG-KTIFSKNTNLPVRERRLGYLVQEGVLF---------P-HL-------TVYRNIAY 103
Query: 1304 ------------KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSK 1346
+ ++ +E G+ SG GQ+Q LARAL +
Sbjct: 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSG-----GQQQRAALARALAPDPE 158
Query: 1347 VLCLDECTANVDAQ--------TASILQNAISSECKGMTVITIAH------RISTVLNMD 1392
++ LDE + +D Q + L+ G + + ++H + + D
Sbjct: 159 LILLDEPFSALDEQLRRQIREDMIAALRAN------GKSAVFVSHDREEALQYA-----D 207
Query: 1393 EILILDHGHLVEQGNPQTL 1411
I ++ G +++ +P L
Sbjct: 208 RIAVMKQGRILQTASPHEL 226
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-15
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 53/229 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--- 678
+ VS + +G +V ++G GSGK+++L I G T G + G + +P
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86
Query: 679 -QVPWILSG------------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GD 723
V G T+ DN+ FG E V L +
Sbjct: 87 RNV-----GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR----VRELLRFMRLES 137
Query: 724 MA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWILSNAI 777
A + E LSGGQ+ R+ALARA+ + + D+ +A+D Q+ ++
Sbjct: 138 YANRFPHE----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ--- 190
Query: 778 MGPHMLQK----TRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 820
+ T + TH+ Q A+ AD V+V+ +G V+ G+ ++
Sbjct: 191 -----VHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-15
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 41/240 (17%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IEF V Y + + ++F I G VG++G +G+GK++IL + L G +
Sbjct: 15 IEFVGVEKIYPGGARS-VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-------- 1303
+ G + + P + R +V Q+ LF HM V +
Sbjct: 74 IGGKRVTDLPPQK-RN-VGLVFQNYALF---------Q-HMT-------VYDNVSFGLRE 114
Query: 1304 --------KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
V+E + + LE++ S GQ+Q + LARAL +VL DE A
Sbjct: 115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174
Query: 1356 NVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ-GNPQTL 1411
+D Q L+ + + G+T + + H L + D +L+L G+ VEQ G P+ +
Sbjct: 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN-VEQFGTPEEV 233
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 46/241 (19%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1251 LVDGLNIINTPV--RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVL 1302
L+DG ++ + D+ A V Q+ LF P HMN + +++ +
Sbjct: 58 LLDGKDVTDLSPEKHDI----AFVYQNYSLF---------P-HMNVKKNLEFGMRMKKIK 103
Query: 1303 EKCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
+ V + + +E + SG G++Q + LARAL+ + K+L LDE + +
Sbjct: 104 DPKRVLDTARDLKIEHLLDRNPLTLSG-----GEQQRVALARALVTNPKILLLDEPLSAL 158
Query: 1358 DAQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1410
D +T + +TV+ I H + M D I ++ G L++ G P+
Sbjct: 159 DPRTQENARE----MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214
Query: 1411 L 1411
+
Sbjct: 215 I 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 8e-12
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 50/225 (22%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVPW 682
N L+ +SL + G ++G G+GK+ L I G + G I G + + P
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS--PE 70
Query: 683 ---ILSG------------TIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVG-G 722
I ++ N+ FG K DP+ +T + +
Sbjct: 71 KHDI--AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR----------DLKIE 118
Query: 723 DMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ LSGG++ R+ALARA+ I +LD+ LSA+D + + +
Sbjct: 119 HLLDRNPLT----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRT-QENAREMLS-- 171
Query: 781 HMLQK----TRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
+L K T + TH+ +A AD + V+ G++ +G ++
Sbjct: 172 -VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 67/249 (26%), Positives = 107/249 (42%), Gaps = 52/249 (20%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+I+ + + L IN I G V ++G +G+GKS+ L L L G+I
Sbjct: 24 MIDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1251 LVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC--- 1305
++DG+N+ T + +R +V Q F NL P HM +VL
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQR-F--------NLFP-HM-------TVLNNITLA 124
Query: 1306 --HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1351
V +E+ EA VGL+ S S GQ Q + +ARAL K++ D
Sbjct: 125 PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184
Query: 1352 ECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNM-------DEILILDHGHLV 1403
E T+ +D + +L +GMT++ + H M D +L +D G+++
Sbjct: 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE------MGFAREVGDRVLFMDGGYII 238
Query: 1404 EQGNPQTLL 1412
E+G P+ L
Sbjct: 239 EEGKPEDLF 247
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 29/227 (12%)
Query: 1196 NVTMRYKPSLPAALHDINFTIEGGTQ-VGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
R +N E G ++G TGAGKS L + + G++ ++G
Sbjct: 6 RAEKRLGN------FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59
Query: 1255 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLE-KCHV 1307
+I P RG VPQ LF P H++ + L+ +E V
Sbjct: 60 ADITPLPPER-RG-IGFVPQDYALF---------P-HLSVYRNIAYGLRNVERVERDRRV 107
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+E E +G+ + S G+RQ + LARAL+ ++L LDE + VD +T +L
Sbjct: 108 REMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167
Query: 1368 AISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1411
+ + + ++ + H + + DE+ ++ +G +VE+G + L
Sbjct: 168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 41/210 (19%)
Query: 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------IAYVPQ---- 679
++G G+GKS L I G + G + +G+ I +VPQ
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL 81
Query: 680 VPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVG-GDMA--YIGEKGVNLS 735
P + ++ NI +G +N + ++ + +G + LS
Sbjct: 82 FPHL---SVYRNIAYGLRNVERVERDRRVRE-MAE-----KLGIAHLLDRKPAR----LS 128
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILCT 791
GG+R R+ALARA+ + +LD+ LSAVD + + +L + +Q+ + T
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKT-KGVLMEELR---FVQREFDVPILHVT 184
Query: 792 HN-VQAISAADMVVVMDKGQVKWIGSSADL 820
H+ ++A AD V VM G++ G +L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 58/249 (23%), Positives = 115/249 (46%), Gaps = 37/249 (14%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I +NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1252 VDGLNIINTPVRDL----RGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSV 1301
D + + + R +V Q+ L+ P ++ ++ L +
Sbjct: 64 FDDRLVASNGKLIVPPEDRK-IGMVFQTWALY---------P-NLTAFENIAFPLTNMKM 112
Query: 1302 ----LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
+ K V+E + + + + S Q+Q + LARAL+K +L LDE +N+
Sbjct: 113 SKEEIRK-RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1358 DAQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1410
DA+ ++++ + K G+T++ ++H + + + D + +L G LV+ G P+
Sbjct: 172 DAR----MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227
Query: 1411 LLQDECSVF 1419
L + S+
Sbjct: 228 LYDNPVSIQ 236
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 51/248 (20%)
Query: 604 MA-VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662
M +I+++ + + V L+ V++ + G ++G G+GK++ + I G +
Sbjct: 1 MVRIIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56
Query: 663 LTHGSIHASGS----------------IAYV-------PQVPWILSGTIRDNILFG---K 696
+ G ++ I V P + T +NI F
Sbjct: 57 PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL------TAFENIAFPLTNM 110
Query: 697 NYDPQSYSETLK--ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDI 754
+ + ++ A LD+ + LSG Q+ R+ALARA+ +
Sbjct: 111 KMSKEEIRKRVEEVAKILDIH---------HVLNHFPRELSGAQQQRVALARALVKDPSL 161
Query: 755 YMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHN-VQAISAADMVVVMDKGQVK 812
+LD+ S +DA++ R + L T ++ +H+ + AD V V+ KG++
Sbjct: 162 LLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220
Query: 813 WIGSSADL 820
+G DL
Sbjct: 221 QVGKPEDL 228
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-11
Identities = 48/291 (16%), Positives = 88/291 (30%), Gaps = 21/291 (7%)
Query: 505 VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFI 564
+ S + L+ + A + ++ + L A+
Sbjct: 333 AIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADL---IDERIIDQQAWF 389
Query: 565 SIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQN 624
+ + E K + + N N D +D + +
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI 449
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
++ L L + + G G GKS+L+ +I + YV
Sbjct: 450 LLNK-TQLRLKRARRYGICGPNGCGKSTLMRAIANGQ-VDGFPTQEECRTVYVEHDIDGT 507
Query: 685 SG--TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742
++ D + ++ + L G I LSGG + +L
Sbjct: 508 HSDTSVLDFVFESGVGTKEAIKDKLIE----------FGFTDEMIAMPISALSGGWKMKL 557
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
ALARAV +DI +LD+ + +D W L N + T I +H+
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTVNVAW-LVNYLNT---CGITSITISHD 604
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 3e-10
Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 59/230 (25%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L+ ++ + GI G G GKS+++ A I GQ VDG R
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRA------IANGQ--VDGFPTQE------ECR 496
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH---------VKEEVEAVGL--E 1317
V SVL+ +K+++ G E
Sbjct: 497 TVYVEHDIDGTHSDT----------------SVLDFVFESGVGTKEAIKDKLIEFGFTDE 540
Query: 1318 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1377
+ S G + + LARA+L+++ +L LDE T ++D + L N +++ C T
Sbjct: 541 MIAMPIS-ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGI-T 597
Query: 1378 VITIAHRISTVLN--MDEILILDHGHLVE-QGNPQTLLQDECSVFSSFVR 1424
ITI+H S L+ + I+ + L + +GN F+ FV+
Sbjct: 598 SITISH-DSVFLDNVCEYIINYEGLKLRKYKGN-----------FTEFVK 635
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 1146 GNFLSSFTETEKEMVSLERV----LEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY 1201
GN + F + + E + LE+ L G ++ + +++ N+ +Y
Sbjct: 628 GN-FTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ-----KAIVKVTNMEFQY 681
Query: 1202 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+ + DINF +++ ++G GAGKS+++N L G++
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 679
+ ++ S +AVIG G+GKS+L+N + GE++ T G + H + IAY+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 743
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 1326 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR- 1384
S GQ+ + LA + ++ LDE T +D + L A+ +G VI I H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EG-GVIIITHSA 958
Query: 1385 --ISTVLNMDEILILDHGHLVE-QGN 1407
+ +E+ + G + N
Sbjct: 959 EFTKNL--TEEVWAVKDGRMTPSGHN 982
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGGQ+ +L LA + + +LD+ + +D LS A+ + I+ TH
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA-LSKALKE---FEGGVIIITH 956
Query: 793 NVQAISA-ADMVVVMDKGQVK 812
+ + + V + G++
Sbjct: 957 SAEFTKNLTEEVWAVKDGRMT 977
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 61/275 (22%), Positives = 98/275 (35%), Gaps = 92/275 (33%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+ ++ RY L ++ G + I+G +G+GKS+ L + L G I
Sbjct: 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 1251 LVDGLNIINTP-------------VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1297
+V+G NI +R LR R +V Q F NL HM
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH-F--------NLWS-HM----- 108
Query: 1298 IWSVLEKC-----HV----KEEVEA--------VGLETFVKE------SGISFSVGQRQL 1334
+VLE V K + VG++ + SG GQ+Q
Sbjct: 109 --TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG-----GQQQR 161
Query: 1335 ICLARALLKSSKVLCLDECTANVD--------------AQTASILQNAISSECKGMTVIT 1380
+ +ARAL VL DE T+ +D A+ G T++
Sbjct: 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-------------GKTMVV 208
Query: 1381 IAHRIS---TVLNMDEILILDHGHLVEQGNPQTLL 1412
+ H + V ++ L G + E+G+P+ +
Sbjct: 209 VTHEMGFARHV--SSHVIFLHQGKIEEEGDPEQVF 241
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 62/247 (25%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICGGQ 1249
++ +N+ + L I+ +++ G V I+G +G+GKS++L L L P G+
Sbjct: 4 ILRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT-EGK 60
Query: 1250 ILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-- 1303
+ ++G + T ++L + V Q ++ +L + LE
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQF--------------HYLIPEL---TALENV 103
Query: 1304 --------------KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKS 1344
K + + +GL + SG G++Q + +ARAL
Sbjct: 104 IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSG-----GEQQRVAIARALANE 158
Query: 1345 SKVLCLDECTANVDAQTA----SILQ--NAISSECKGMTVITIAHRISTVLNMDEILILD 1398
+L DE T N+D+ I N G +++ + H L +
Sbjct: 159 PILLFADEPTGNLDSANTKRVMDIFLKINE-----GGTSIVMVTHERELAELTHRTLEMK 213
Query: 1399 HGHLVEQ 1405
G +V +
Sbjct: 214 DGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
+L +SL + KG V++IG GSGKS+LL ILG
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLY-ILG 51
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 33/215 (15%)
Query: 1191 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICG 1247
+++ +NVT YK + AL ++N I+ G V I+G +G+GKS++LN + L P
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TE 59
Query: 1248 GQILVDGLNIINTPVRDL----RGRFAVVPQS----PFLFEGSLRDNLD-PFHMNDDLKI 1298
G++ +D + + +L R + V Q P L + +N++ P +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAM 116
Query: 1299 WSVLEKCHVKEEVEAVGLETFVKE------SGISFSVGQRQLICLARALLKSSKVLCLDE 1352
+ E ++ LE SG GQ+Q + +ARAL + ++ D+
Sbjct: 117 SGEERRKRALECLKMAELEERFANHKPNQLSG-----GQQQRVAIARALANNPPIILADQ 171
Query: 1353 CTANVDAQTA----SILQNAISSECKGMTVITIAH 1383
T +D++T +L+ ++ E G TV+ + H
Sbjct: 172 PTWALDSKTGEKIMQLLKK-LNEE-DGKTVVVVTH 204
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
EE L V+L + +G V+++G GSGKS++LN I+G
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIG 52
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 90/599 (15%), Positives = 181/599 (30%), Gaps = 156/599 (26%)
Query: 572 FLGCSEYKHELEQ-AANSPSYIS--NGLSNFNS--KDMAVIMQDATCSWYCNNEEEQNVV 626
FL S K E Q + + YI + L N N V + + +
Sbjct: 93 FL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV------------SRLQPYLK 139
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686
L Q L L V + G +GSGK+ + + L++ ++ W+
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDF-----KIFWL--- 187
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746
N P++ E L+ +D + D + + ++ S R L
Sbjct: 188 ----N--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKS 240
Query: 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAI-MGPHMLQKTR------ILCTHNVQAISA 799
Y + +L +V +A NA + +L TR L IS
Sbjct: 241 KPYENCLL-VLLNVQNA-------KAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 800 ADMVVVMDKGQV-----KWIGSSAD-----------LAVSLYSGFWS--TNEFDTSLHMQ 841
+ + +V K++ +S+ + +D H+
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 842 KQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFIT 901
++ T ++ S + E E + + L+V+ A I
Sbjct: 352 CDKLTT---------------IIESSLNVLEPAEYRKMFD---RLSVFPPSAH-----IP 388
Query: 902 L-VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRA 960
++ L +W S +V L +
Sbjct: 389 TILLSL-------------IW----------FDVIKSDVMVVVNKLH----KYSLVEKQP 421
Query: 961 FSFAFGSLRAAVKVHN---TLLTKIVNAPVLFFDQTPGGRILNRFS-SDLYMIDDSLPFI 1016
+ + L K+ N L I++ ++ + DD +P
Sbjct: 422 KESTIS-------IPSIYLELKVKLENEYALH------RSIVDHYNIPKTFDSDDLIPPY 468
Query: 1017 LNILLANFVG--LLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSR 1074
L+ + +G L I F ++ + F F+ K++ + + L+++ +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 1075 SPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQVGL 1133
Y + N R + F+ K +E+++ + Y++L L++ L
Sbjct: 527 LKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLI---CSKYTDL---------LRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 6e-07
Identities = 68/399 (17%), Positives = 134/399 (33%), Gaps = 118/399 (29%)
Query: 201 NTDSGNNQ-SYWDLM-----AF-KSID----SVMNRGVIKQLDFEDLLGLPTDMDPS--- 246
+ ++G +Q Y D++ AF + D M + ++ + + + ++ + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 247 --TCHSK-------------------LLSCWQAQRSCNCTNPSLVRAICCAYGYPYI-CL 284
T SK L+S + + PS++ + YI
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE----QRQPSMMTRM-------YIEQR 116
Query: 285 GLLKVVNDSIGFAG-----PLLLNKLIKFLQQ-------------GSGHLDGYVLAIALG 326
++ ND+ FA KL + L + GSG +A+ +
Sbjct: 117 D--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVALDVC 171
Query: 327 LTSILKSFFDTQYSFHLSKLKLKLRSSIMTII-YQKCLYVRL----AERSEFSDGEIQTF 381
L+ ++ D F + L LK +S T++ + L ++ RS+ S
Sbjct: 172 LSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 382 MSVDTDRTVNLANSFH--------DAWSL----PFQIGVALYLLYTQVK--FAFVSGLAI 427
S+ + L + + + + F + + LL T+ K F+S
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATT 286
Query: 428 TILLIPVNKWIANLIANATE----KMMKQKDERIRRTGEIL-THIRTLKMYG-------- 474
T I ++ L + + K + + + + R E+L T+ R L +
Sbjct: 287 TH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLA 342
Query: 475 ----WEQIFSSWLMKTRSSEVKHLST---RKYLDAWCVF 506
W+ + L S + L RK D VF
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-04
Identities = 77/531 (14%), Positives = 143/531 (26%), Gaps = 178/531 (33%)
Query: 749 YHGSDI--YMLDDVLSAVDAQ----VARWILSNA-----IMGPHMLQKTR----ILCTHN 793
Y DI D + D + + + ILS IM + T L +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 794 VQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSAN 853
+ + V + + K++ S T + S+ + + + +
Sbjct: 76 EEMV--QKFVEEVLRINYKFLMSP-----------IKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 854 KQILLQEKDVVSVSDDAQEIIEV--EQRKEGRVELTVY--KNYAKFSGWFITLVICLSAI 909
Q+ K VS ++ + E R V + K ++ L +CLS
Sbjct: 123 NQVF--AKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGK---TWVALDVCLSYK 175
Query: 910 LMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 969
+ Q + WL+ +
Sbjct: 176 V-QCKMDFKIFWLN-----------------------------------------LKNCN 193
Query: 970 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLG 1029
+ T+L + L + P + SS++ + S+ L LL +
Sbjct: 194 SP----ETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS------ 240
Query: 1030 IAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSS 1089
Y LLV L +V + + +F N S
Sbjct: 241 ----KPYENC----LLV----------------------LLNVQNAKAWNAF----NLSC 266
Query: 1090 TI----RAFKSEDYFMAKFKEHVVL--YQRTSYSELTASL---WLSLRLQVGLALSYAA- 1139
I R + D+ A H+ L + T + SL +L R Q L
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ---DLPREVL 323
Query: 1140 ---P-IVSLLGNFLSSFTET---------EKEMVSLERVLEYMDVPQEELCGYQSLS--P 1184
P +S++ + T +K +E L ++ P E + LS P
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFP 382
Query: 1185 D------------W-------PFQGLIEFQNVTM--RYKPSLPAALHDINF 1214
W + + ++ + ++ I
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 4e-09
Identities = 57/257 (22%), Positives = 113/257 (43%), Gaps = 60/257 (23%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I+ +N+ ++ + A L++IN I+ G + ++G +G+GKS++L + + G+I
Sbjct: 4 IKLENIVKKF-GNFTA-LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1307
D ++ P +D R +V Q+ P + ++ N + L++ + +
Sbjct: 62 FDEKDVTELPPKD-RN-VGLVFQNWALYPHM---TVYKN-----IAFPLEL-RKAPREEI 110
Query: 1308 KEEVEAV----GLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
++V V ++ + SG GQ+Q + +ARAL+K +VL LDE +N+D
Sbjct: 111 DKKVREVAKMLHIDKLLNRYPWQLSG-----GQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 1359 AQTASILQNAISSECK------GMTVI----------TIAHRISTVLNMDEILILDHGHL 1402
A L+ + +E K G+T + +A R I ++ G +
Sbjct: 166 AL----LRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR---------IAVIREGEI 212
Query: 1403 VEQGNPQTLLQDECSVF 1419
++ G P + F
Sbjct: 213 LQVGTPDEVYYKPKYKF 229
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-08
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 55/228 (24%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
LN ++L + G +A++G GSGKS+LL +I G T G I+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN 76
Query: 674 IAYV-------PQVPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
+ V P + T+ NI F + + + ++ A L +D
Sbjct: 77 VGLVFQNWALYPHM------TVYKNIAFPLELRKAPREEIDKKVREVAKMLHID------ 124
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 773
+ LSGGQ+ R+A+ARA+ ++ +LD+ LS +DA ++ R L
Sbjct: 125 ---KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR--L 179
Query: 774 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T + TH+ +A++ AD + V+ +G++ +G+ ++
Sbjct: 180 Q------KELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 62/258 (24%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ +N+T R+ + A ++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 12 VKLENLTKRF-GNFTA-VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1307
++ P +D R ++V QS P + ++ +N + LKI K +
Sbjct: 70 FGDRDVTYLPPKD-RN-ISMVFQSYAVWPHM---TVYEN-----IAFPLKI-KKFPKDEI 118
Query: 1308 KEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
+ V +E + + SG GQRQ + +ARA++ VL +DE +N+D
Sbjct: 119 DKRVRWAAELLQIEELLNRYPAQLSG-----GQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 1359 AQTASILQNAISSECK------GMTVI----------TIAHRISTVLNMDEILILDHGHL 1402
A+ L+ A+ +E K +T I T+ R I +++ G
Sbjct: 174 AK----LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR---------IAVMNRGQ- 219
Query: 1403 VEQ-GNPQTLLQDECSVF 1419
+ Q G+P + SVF
Sbjct: 220 LLQIGSPTEVYLRPNSVF 237
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 62/257 (24%)
Query: 597 SNFNSKDMA-VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN 655
+N M V +++ T + +N+++L + G + ++G G GK++ L
Sbjct: 2 NNIEVIKMVEVKLENLTKRF------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLR 55
Query: 656 SILGEMMLTHGSIHASGS-----------IAYV-------PQVPWILSGTIRDNILFG-- 695
I G T G I+ I+ V P + T+ +NI F
Sbjct: 56 MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM------TVYENIAFPLK 109
Query: 696 -KNYDPQSYSETLK--ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752
K + + ++ A L ++ + LSGGQR R+A+ARA+
Sbjct: 110 IKKFPKDEIDKRVRWAAELLQIE---------ELLNRYPAQLSGGQRQRVAVARAIVVEP 160
Query: 753 DIYMLDDVLSAVDA--------QVARWILSNAIMGPHMLQKTRILCTHN-VQAISAADMV 803
D+ ++D+ LS +DA ++ + L L+ T I TH+ V+A++ D +
Sbjct: 161 DVLLMDEPLSNLDAKLRVAMRAEIKK--LQ------QKLKVTTIYVTHDQVEAMTMGDRI 212
Query: 804 VVMDKGQVKWIGSSADL 820
VM++GQ+ IGS ++
Sbjct: 213 AVMNRGQLLQIGSPTEV 229
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 62/258 (24%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I N+ + A+ ++F ++ G V ++G +G GK++ L L + G+I
Sbjct: 4 IRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1307
D + + + P + R +V Q+ P + ++ +N + L+ + K V
Sbjct: 62 FDDVLVNDIPPKY-RE-VGMVFQNYALYPHM---TVFEN-----IAFPLRA-RRISKDEV 110
Query: 1308 KEEVEAV----GLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
++ V + ++ + SG GQ+Q + LARAL+K KVL DE +N+D
Sbjct: 111 EKRVVEIARKLLIDNLLDRKPTQLSG-----GQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 1359 AQTASILQNAISSECK------GMTVI----------TIAHRISTVLNMDEILILDHGHL 1402
A L+ + +E K G+T + T+A R I + + G
Sbjct: 166 AN----LRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASR---------IAVFNQGK- 211
Query: 1403 VEQ-GNPQTLLQDECSVF 1419
+ Q G P + ++F
Sbjct: 212 LVQYGTPDEVYDSPKNMF 229
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 55/228 (24%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
++ VS + G VA++G G GK++ L + G T G I+
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76
Query: 674 IAYV-------PQVPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
+ V P + T+ +NI F + + + A L +D
Sbjct: 77 VGMVFQNYALYPHM------TVFENIAFPLRARRISKDEVEKRVVEIARKLLID------ 124
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 773
+ K LSGGQ+ R+ALARA+ + + D+ LS +DA ++ L
Sbjct: 125 ---NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH--L 179
Query: 774 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T + TH+ +A++ A + V ++G++ G+ ++
Sbjct: 180 Q------QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 45/191 (23%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+ +V + + A + +++ ++ G + ++G +G GK++ L + L GQI
Sbjct: 4 VRLVDVWKVF-GEVTA-VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD------N--LDPFHMN--DD----LK 1297
+ V D V P+ RD + L P HM D+ LK
Sbjct: 62 IGD-----KLVADPEKGIFVPPKD--------RDIAMVFQSYALYP-HMTVYDNIAFPLK 107
Query: 1298 IWSVLEKCHVKEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVL 1348
+ + + + + V V GL + +E SG GQRQ + L RA+++ +V
Sbjct: 108 L-RKVPRQEIDQRVREVAELLGLTELLNRKPRELSG-----GQRQRVALGRAIVRKPQVF 161
Query: 1349 CLDECTANVDA 1359
+DE +N+DA
Sbjct: 162 LMDEPLSNLDA 172
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 9e-06
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 49/228 (21%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
+ ++SL + G + ++G G GK++ L I G + G I+ + P+ +
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76
Query: 685 SG------------------TIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
T+ DNI F + Q + ++ A L +
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT------ 130
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 773
+ K LSGGQR R+AL RA+ ++++D+ LS +DA ++ + L
Sbjct: 131 ---ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK--L 185
Query: 774 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T I TH+ V+A++ D + VM++G ++ +GS ++
Sbjct: 186 Q------RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 734 LSGGQRA------RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
LSGG+R RLA++ + + +LD+ +D + R ++ +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQV 307
Query: 788 ILCTHNVQAISAADMVVVMDKG 809
IL +H+ + AAD V+ +
Sbjct: 308 ILVSHDEELKDAADHVIRISLE 329
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 1180 QSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1239
SL +W G +F T + L + V ++G+ G GKSS +N+L
Sbjct: 2 GSLVREW--VGFQQFPAAT---QEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL 56
Query: 1240 -----FRLTPI-------CGGQILVDG--LNIINTP 1261
R++P + G +NII+TP
Sbjct: 57 IGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTP 92
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 640 VAVIGEVGSGKSSLLNSILGE 660
V V+G+ G GKSS +NS++GE
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGE 59
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 2e-04
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
+ V+G++ GKS+ LN+++GE +L + + +
Sbjct: 72 LLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVL 109
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671
VAV GE GSGKSS +N++ G G+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 103
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 9e-04
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 1136 SYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQ 1195
+++P + SSFT K+ + +++ QE L + Q
Sbjct: 4 LFSSPKSDENNDLPSSFTGYFKKFNTGRKII-----SQEILNLIELRMRAGNIQLTNSA- 57
Query: 1196 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1240
+ AL +I+ V + G TG+GKSS +N L
Sbjct: 58 ---------ISDALKEID---SSVLNVAVTGETGSGKSSFINTLR 90
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 19/97 (19%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWILSNAIMGPH-MLQ 784
LSGGQR R+A+ R + +++LD+ LS +DA +++R L H L
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR--L-------HKRLG 184
Query: 785 KTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
+T I TH+ V+A++ AD +VV+D G+V +G +L
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ QNVT + DIN I G V VG +G GKS++L + L I G +
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1307
+ + +TP + RG +V QS P L S+ +N M+ LK+ + +K +
Sbjct: 62 IGEKRMNDTPPAE-RG-VGMVFQSYALYPHL---SVAEN-----MSFGLKL-AGAKKEVI 110
Query: 1308 KEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
+ V V L + K SG GQRQ + + R L+ V LDE +N+D
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKALSG-----GQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 1359 A 1359
A
Sbjct: 166 A 166
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 8e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 640 VAVIGEVGSGKSSLLNSILGE 660
+ V+G+ G GKSS +NSI+GE
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGE 62
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1428 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-73 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-49 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-70 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-45 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-65 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-42 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-65 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-45 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-62 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-43 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-60 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-54 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-41 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-39 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-38 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-28 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-37 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-30 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-37 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-25 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-34 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-34 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-34 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-33 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-25 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-32 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-30 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 9e-30 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-20 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-27 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-13 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-06 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-04 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.002 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 0.002 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 0.002 | |
| d2akab1 | 299 | c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n | 0.002 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 243 bits (622), Expect = 1e-73
Identities = 75/245 (30%), Positives = 132/245 (53%), Gaps = 4/245 (1%)
Query: 1184 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1243
P QG I+ +V+ +Y + L DIN +IE G V VG +G GKS+++N + R
Sbjct: 9 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1244 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-DPFHMNDDLKIWSVL 1302
+ GQIL+DG NI + LR + +V Q LF ++++N+ D ++
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 1303 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1360
+ + + + + G +T V E G+ S GQ+Q + +AR L + +L LDE T+ +D +
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 1361 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
+ SI+Q A+ K T + +AHR+ST+ + D+I+++++GH+VE G + L+ + +
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYE 247
Query: 1421 SFVRA 1425
Sbjct: 248 HLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 174 bits (442), Expect = 2e-49
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ + +L ++L + KG VA +G G GKS+L+N I +T G I G
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 86
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I V Q + S T+++NIL G + E K I + G
Sbjct: 87 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDT 146
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+GE+GV LSGGQ+ RL++AR + I +LD+ SA+D + I + +
Sbjct: 147 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ--EALDVLSKDR 204
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
T ++ H + I+ AD +VV++ G + G+ +L
Sbjct: 205 TTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 239
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 232 bits (593), Expect = 9e-70
Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 5/241 (2%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
G +EF+NVT Y AL +IN I G V +VGR+G+GKS+I + + R I G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN--LDPFHMNDDLKIWSVLEKCH 1306
IL+DG ++ + LR + A+V Q+ LF ++ +N +I +
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1307 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364
+ + + GL+T + E+G+ S GQRQ I +ARALL+ S +L LDE T+ +D ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1365 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424
+Q A+ K T + IAHR+ST+ DEI++++ G +VE+G LL + V++ +
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLHK 249
Query: 1425 A 1425
Sbjct: 250 M 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 161 bits (410), Expect = 3e-45
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 19/228 (8%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ L ++L +P G VA++G GSGKS++ + I + G I G
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 83
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDM 724
+A V Q + + T+ +NI + + Y + E + I+ M G
Sbjct: 84 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD 143
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
IGE GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I A +
Sbjct: 144 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ--AALDELQKN 201
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
+T ++ H + I AD +VV++ G + G+ ++L +Y+
Sbjct: 202 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 219 bits (559), Expect = 2e-65
Identities = 84/239 (35%), Positives = 131/239 (54%), Gaps = 3/239 (1%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEE 1310
+DG ++ LR + VV Q L S+ DN+ + K+ + +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1311 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
+ + G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1369 ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427
+ CKG TVI IAHR+STV N D I++++ G +VEQG + LL + S++S + +
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 153 bits (387), Expect = 3e-42
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ + V+L+ ++L + +G ++ ++G GSGKS+L I + +G + G
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
+ V Q +L+ +I DNI + K IS + G
Sbjct: 72 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNT 131
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+GE+G LSGGQR R+A+ARA+ + I + D+ SA+D + I+ N M +
Sbjct: 132 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKGR 189
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 829
T I+ H + + AD ++VM+KG++ G +L SLYS +
Sbjct: 190 TVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 218 bits (557), Expect = 6e-65
Identities = 77/252 (30%), Positives = 124/252 (49%), Gaps = 9/252 (3%)
Query: 1181 SLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1239
L+P +GL++FQ+V+ Y L + FT+ G +VG G+GKS++ L
Sbjct: 2 LLTP-LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 1240 FRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DLK 1297
L GGQ+L+DG + R L + A V Q P +F SL++N+ +
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 120
Query: 1298 IWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1355
I + K + + G +T V E+G S GQRQ + LARAL++ VL LD+ T+
Sbjct: 121 ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 1356 NVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
+DA + ++ + S E +V+ I +S V D IL L+ G + E G Q L++
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 240
Query: 1414 DECSVFSSFVRA 1425
+ + + V+A
Sbjct: 241 -KKGCYWAMVQA 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 161 bits (410), Expect = 3e-45
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 15/216 (6%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+VL ++ L G + A++G GSGKS++ + T G + G
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE 82
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDP--QSYSETLKACTLDVDISLMVGGDM 724
+A V Q P + ++++NI +G P + + IS + G
Sbjct: 83 HRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 142
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
+ E G LSGGQR +ALARA+ + +LDD SA+DA + P
Sbjct: 143 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 202
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
++ +L T ++ + AD ++ ++ G ++ G+ L
Sbjct: 203 RSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 210 bits (537), Expect = 2e-62
Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 6/238 (2%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
++ ++V Y S L DI+F + + + G +G GKS+I + L R G+I
Sbjct: 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD--PFHMNDDLKIWSVLEKCHVK 1308
+DG I N + + R + V Q + G++R+NL D +W VL+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1309 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
VE + L T V E G+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++Q
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424
A+ S KG T + IAHR+ST+++ D+I ++ G + G L+ +++ +V
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVS 236
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 154 bits (391), Expect = 9e-43
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+L +S S++A G G GKS++ + + T G I G
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 673 SIAYVPQVPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I +V Q I++GTIR+N+ +G +Y + + L + M +GE+
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
GV +SGGQR RLA+ARA I MLD+ +++D++ + + M +T ++
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA--LDSLMKGRTTLVI 194
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
H + I AD + ++KGQ+ G +L LY+ + S
Sbjct: 195 AHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 206 bits (526), Expect = 2e-60
Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 24/276 (8%)
Query: 1160 VSLERVLEYMDVPQEELCGYQSLSPD----WPFQGLIEFQNVTMRYKPSLPAALHDINFT 1215
+ +E V + + EL S + + F ++ + P L +IN
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1275
IE G + I G TG+GK+S+L + G I GR + Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------GRVSFCSQF 105
Query: 1276 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQ 1333
++ G++++N+ D+ + SV++ C +++++ T + E G++ S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1334 LICLARALLKSSKVLCLDECTANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLNMD 1392
I LARA+ K + + LD +D T + ++ + T I + ++ + D
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1393 EILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1428
+ILIL G G L S + T
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 261
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 189 bits (481), Expect = 2e-54
Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
VL ++L + KG ++A+ G GSGK+SLL ILGE+ + G I SG +++ Q WI+
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 110
Query: 686 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
GTI++NI+FG +YD Y +KAC L DI+ D +GE GV LSGGQRAR++LA
Sbjct: 111 GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RAVY +D+Y+LD +D + + + M KTRIL T ++ + AD +++
Sbjct: 171 RAVYKDADLYLLDSPFGYLDVFTEEQVF-ESCVCKLMANKTRILVTSKMEHLRKADKILI 229
Query: 806 MDKGQVKWIGSSADL---AVSLYSGFWSTNEFD 835
+ +G + G+ ++L S + FD
Sbjct: 230 LHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFD 262
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 149 bits (377), Expect = 5e-41
Identities = 45/234 (19%), Positives = 92/234 (39%), Gaps = 22/234 (9%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+++ Q+V L ++ + G + +VG GAGKS++L + +T G I
Sbjct: 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 55
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
G + L A + Q + + H +D + + +
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR------TELLNDV 109
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSS-------KVLCLDECTANVDAQTAS 1363
A+ L+ + S S G+ Q + LA +L+ + ++L LDE ++D S
Sbjct: 110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 169
Query: 1364 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
L +S+ +G+ ++ +H ++ L +L G ++ G + +L
Sbjct: 170 ALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 5e-21
Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 37/219 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L +S + G ++ ++G G+GKS+LL + G M GSI +G
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLAL 72
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
AY+ Q + + ++ + ++ A LD +G
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGR 121
Query: 730 KGVNLSGGQRARLALARAVYH-------GSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
LSGG+ R+ LA V + +LD+ ++++D + +
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQ 180
Query: 783 LQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
++ +H++ + A ++ G++ G ++
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 143 bits (361), Expect = 8e-39
Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 11/233 (4%)
Query: 1191 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+I+ N+T + AL++++ + G G++G +GAGKS+++ + L G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 1249 QILVDGLNIINTP---VRDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEK 1304
+LVDG + + R + ++ Q L ++ N+ D+ V +
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 1305 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1364
V E + VGL + S GQ+Q + +ARAL + KVL DE T+ +D T
Sbjct: 121 --VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1365 LQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+ + + G+T++ I H + V + D + ++ +G L+EQ +
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 106 bits (266), Expect = 3e-26
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 28/216 (12%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
LN VSL +P G + VIG G+GKS+L+ + T GS+ G
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79
Query: 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG-GDMA-- 725
I + Q +L S T+ N+ D E + T ++ +VG GD
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVGLGDKHDS 136
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
Y LSGGQ+ R+A+ARA+ + + D+ SA+D R IL L
Sbjct: 137 YPSN----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 786 TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T +L TH + D V V+ G++ + +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 139 bits (353), Expect = 7e-38
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 11/229 (4%)
Query: 1191 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+I+ +NVT YK AL ++N I+ G V I+G +G+GKS++LN + L G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 1249 QILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1302
++ +D + + +L R + V Q L + +N++ P +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 1303 EKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1361
+ E ++ L E F S GQ+Q + +ARAL + ++ D+ T +D++T
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 1362 ASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1408
+ + + G TV+ + H I+ + I+ L G + +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (285), Expect = 1e-28
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 18/216 (8%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 672
EE L V+L + +G V+++G GSGKS++LN I T G ++
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 673 ------------SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
I +V Q ++ T +N+ + + + ++ M
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
+ + K LSGGQ+ R+A+ARA+ + I + D A+D++ I+
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815
KT ++ TH++ + ++ + G+V+
Sbjct: 192 NEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 139 bits (351), Expect = 2e-37
Identities = 50/227 (22%), Positives = 105/227 (46%), Gaps = 10/227 (4%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ +N+T R+ A++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
+ T + ++V QS ++ ++ +N+ + ++ V+
Sbjct: 65 FGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR--VRWA 120
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
E + +E + S GQRQ + +ARA++ VL +DE +N+DA+ ++ I
Sbjct: 121 AELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 180
Query: 1371 SECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+ +T I + H + M D I +++ G L++ G+P +
Sbjct: 181 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 117 bits (294), Expect = 8e-30
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 17/209 (8%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673
+N+++L + G + ++G G GK++ L I G T G I+ +
Sbjct: 20 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79
Query: 674 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
I+ V Q + T+ +NI F E K V + + +
Sbjct: 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR----VRWAAELLQIEELLNRYPA 135
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGGQR R+A+ARA+ D+ ++D+ LS +DA++ + + L+ T I TH
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195
Query: 793 NVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ A++ D + VM++GQ+ IGS ++
Sbjct: 196 DQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 138 bits (350), Expect = 4e-37
Identities = 55/253 (21%), Positives = 108/253 (42%), Gaps = 21/253 (8%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+ ++ RY L ++ G + I+G +G+GKS+ L + L G I+
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 1252 VDGLNIINTPVRD-------------LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLK 1297
V+G NI +D LR R +V Q L+ ++ +N+ + L
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-VLG 119
Query: 1298 IWSVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTAN 1356
+ + + + VG++ + S GQ+Q + +ARAL VL DE T+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 179
Query: 1357 VDAQT-ASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+D + +L+ +G T++ + H + ++ ++ L G + E+G+P+ + +
Sbjct: 180 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239
Query: 1415 ECSVFS-SFVRAS 1426
S F++ S
Sbjct: 240 PQSPRLQQFLKGS 252
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (260), Expect = 4e-25
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 33/226 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
+ VL VSL G ++++IG GSGKS+ L I + G+I +G
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 673 ---------------SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVD 715
+ V Q + S T+ +N++ S + + +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA---LK 131
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
VG D G+ V+LSGGQ+ R+++ARA+ D+ + D+ SA+D ++ +L
Sbjct: 132 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL-R 190
Query: 776 AIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+ KT ++ TH + A + V+ + +G+++ G +
Sbjct: 191 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 131 bits (330), Expect = 1e-34
Identities = 50/232 (21%), Positives = 101/232 (43%), Gaps = 12/232 (5%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+ +V + A+ +++ ++ G + ++G +G GK++ L + L GQI
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1251 LVDGLNII----NTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC 1305
+ + V A+V QS L+ ++ DN+ + + ++
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR- 119
Query: 1306 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
V+E E +GL + S GQRQ + L RA+++ +V +DE +N+DA+ +
Sbjct: 120 -VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 1366 QNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+ + G+T I + H + M D I +++ G L + G+P +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 103 bits (257), Expect = 6e-25
Identities = 46/215 (21%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI-------A 675
+ + ++SL + G + ++G G GK++ L I G + G I+ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 676 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV--------DISLMVGGDMAYI 727
+VP ++ + L+ + + LK + +++ ++G + +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG--LTEL 132
Query: 728 GEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+ LSGGQR R+AL RA+ ++++D+ LS +DA++ + + L T
Sbjct: 133 LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 787 RILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
I TH+ A++ D + VM++G ++ +GS ++
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 131 bits (330), Expect = 1e-34
Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 17/239 (7%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
++ +N+ + AL ++ ++ G I+G G+GKS+++N + G++
Sbjct: 4 ILRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1251 LVDGLNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNL-------DPFHMNDDLKIWSV 1301
+ +I N +L Q+P + ++ +NL +N +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1302 LEKCHVKEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
++ + E+ E + L S GQ +L+ + RAL+ + K++ +DE A V
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 1358 DAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
A + N + KG+T + I HR+ VLN D + ++ +G ++ +G + +++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (268), Expect = 2e-26
Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 26/228 (11%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L+ VS+ + KG + +IG GSGKS+L+N I G + G ++
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 673 ---SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETL---------KACTLDVDISLM 719
I Q P L T+ +N+L G+ +S +L + L
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
K LSGGQ + + RA+ + ++D+ ++ V +A I N ++
Sbjct: 137 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FNHVLE 195
Query: 780 PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADLAVSLYS 826
T ++ H + ++ D + VM GQ+ G + ++ S
Sbjct: 196 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLS 243
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 130 bits (329), Expect = 1e-34
Identities = 53/231 (22%), Positives = 105/231 (45%), Gaps = 14/231 (6%)
Query: 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
G + +++ R L I+F IE G G++G GAGK++ L + L G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1250 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
+ V G N++ P ++R + +P+ N+ + + ++E
Sbjct: 59 VTVFGKNVVEEP-HEVRKLISYLPEEA-----GAYRNMQGIEYLRFVAGFYASSSSEIEE 112
Query: 1310 EVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
VE GL +K+ ++S G + + +ARAL+ + ++ LDE T+ +D A +
Sbjct: 113 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 1366 QNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+ + + G+T++ +H + V + D I ++ +G +VE G + L +
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (260), Expect = 2e-25
Identities = 41/211 (19%), Positives = 84/211 (39%), Gaps = 19/211 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
+L +S + +G + +IG G+GK++ L I + + G + G
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74
Query: 674 --IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I+Y+P+ + + F + S SE + V+ + + G I ++
Sbjct: 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM----VERATEIAGLGEKIKDR 130
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
S G +L +ARA+ + +LD+ S +D AR + + T ++
Sbjct: 131 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV-RKILKQASQEGLTILVS 189
Query: 791 THNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+HN+ D + ++ G + G+ +L
Sbjct: 190 SHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 130 bits (328), Expect = 2e-34
Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 8/229 (3%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
++E Q++ + Y A+ I+ + G V ++G GAGK++ L+A+ L G+I
Sbjct: 6 VLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1251 LVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1308
+ +G +I N P + A+VP+ +F ++ +NL N K +++
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN--RKDKEGIKRDLEW 121
Query: 1309 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1368
L+ +K+ G + S G++Q++ + RAL+ K+L +DE + + S +
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 1369 ISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1415
I + G T++ + L + +L+ G +V +G LL +E
Sbjct: 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 102 bits (256), Expect = 7e-25
Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 21/213 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------- 668
+ + L +P+G +V +IG G+GK++ L++I G + G I
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 669 HASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+ G T+ +N++ G I + +
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL----EWIFSLFPRLKERLK 134
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
+ G LSGG++ LA+ RA+ + M+D+ + + + I + T +
Sbjct: 135 QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV-FEVIQKINQEGTTIL 193
Query: 789 LCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L N A+ A V++ GQ+ G +++L
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 126 bits (319), Expect = 2e-33
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 10/227 (4%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ QNVT + + DIN I G V VG +G GKS++L + L I G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
+ + +TP +V QS L+ S+ +N+ K + ++ V +
Sbjct: 59 IGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--VNQV 114
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
E + L + + S GQRQ + + R L+ V LDE +N+DA ++ IS
Sbjct: 115 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 174
Query: 1371 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+ G T+I + H + + D+I++LD G + + G P L
Sbjct: 175 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 7e-25
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
+ VV ++L + +G V +G G GKS+LL I G +T G +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 71
Query: 673 -SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ V Q + ++ +N+ FG + ++ +
Sbjct: 72 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 130
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQR R+A+ R + +++LD+ LS +DA + + L +T I
Sbjct: 131 ---LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 187
Query: 791 THNV-QAISAADMVVVMDKGQVKWIGSSADL 820
TH+ +A++ AD +VV+D G+V +G +L
Sbjct: 188 THDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 124 bits (311), Expect = 3e-32
Identities = 54/227 (23%), Positives = 110/227 (48%), Gaps = 12/227 (5%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
L+DG T + + A V Q+ LF ++ +++ + + V +
Sbjct: 58 LLDG--KDVTDLSPEKHDIAFVYQNYSLFPHMNVKK----NLEFGMRMKKIKDPKRVLDT 111
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
+ +E + + ++ S G++Q + LARAL+ + K+L LDE + +D +T + +S
Sbjct: 112 ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 1371 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+ +TV+ I H + M D I ++ G L++ G P+ + +
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 97.8 bits (243), Expect = 3e-23
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 28/214 (13%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
N L+ +SL + G ++G G+GK+ L I G + G I G
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72
Query: 673 SIAYVPQVPWILSG-TIRDNILF----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
IA+V Q + ++ N+ F K DP+ +T + + +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLL 121
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
+ LSGG++ R+ALARA+ I +LD+ LSA+D + + + T
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 788 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ TH+ A AD + V+ G++ +G ++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 119 bits (300), Expect = 1e-30
Identities = 54/231 (23%), Positives = 108/231 (46%), Gaps = 9/231 (3%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
I +NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1251 LVDGLNIINTPVRDLRGRF---AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1306
D + + + +V Q+ L+ + +N+ N + + ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-- 120
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
V+E + + + + S Q+Q + LARAL+K +L LDE +N+DA+ +
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 1367 NAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1414
+ G+T++ ++H + + + D + +L G LV+ G P+ L +
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 95.5 bits (237), Expect = 2e-22
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
V L+ V++ + G ++G G+GK++ + I G + + G ++
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 673 ----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
I V Q + T +NI F S E K V+ + +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR----VEEVAKILDIHHVL 134
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
LSG Q+ R+ALARA+ + +LD+ S +DA++ + L T
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 788 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
++ +H+ + AD V V+ KG++ +G DL
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 115 bits (290), Expect = 9e-30
Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 1192 IEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+E +++++ Y KP L I TIE G V G G GK+++L + G+I
Sbjct: 3 LEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
+ +G P+ ++G+ +P+ + S+ D L +K+ K + +
Sbjct: 59 IYNG-----VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV----NKNEIMD 109
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
+E+V + K+ S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 110 ALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 168
Query: 1370 SSECK--GMTVITIAHRISTVLNMDEILIL 1397
K G+ +I+ +S D L
Sbjct: 169 LEILKEKGIVIISSREELSY---CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 87.7 bits (217), Expect = 4e-20
Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 19/194 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 675
VL ++++ + KG++V G G GK++LL +I + G I +G I
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 73
Query: 676 YVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734
++P+ + ++ D + + ++ L+ V + + +K L
Sbjct: 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE-----SVE--VLDLKKKLGEL 126
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794
S G R+ LA + ++IY+LDD + A+D +L + + I
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE- 185
Query: 795 QAISAADMVVVMDK 808
+S D+ + K
Sbjct: 186 --LSYCDVNENLHK 197
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 109 bits (274), Expect = 3e-27
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 13/223 (5%)
Query: 1211 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270
+++F + ++G TGAGKS L + + G++ ++G +I TP+ R
Sbjct: 17 NVDFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIG 73
Query: 1271 VVPQSPFLFE--GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1328
VPQ LF R+ + ++ V+E E +G+ + S
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERD-----RRVREMAEKLGIAHLLDRKPARLS 128
Query: 1329 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRIS 1386
G+RQ + LARAL+ ++L LDE + VD +T +L + + ++ + H +
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1387 TVLNM-DEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1428
+ DE+ ++ +G +VE+G + L + + F+ A +
Sbjct: 189 EAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNL 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 90.1 bits (223), Expect = 2e-20
Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 21/210 (10%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
N LN V + + ++G G+GKS L I G + G + +G
Sbjct: 13 NFRLN-VDFEMGRD-YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
I +VPQ + ++ NI +G + + V G + K
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRR------VREMAEKLGIAHLLDRKP 124
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
LSGG+R R+ALARA+ + +LD+ LSAVD + ++ + T
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 792 HNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
H++ A AD V VM G++ G +L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 77.7 bits (190), Expect = 8e-17
Identities = 18/185 (9%), Positives = 37/185 (20%), Gaps = 26/185 (14%)
Query: 1222 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1281
+ I G G GK++++ + + + T R +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1282 SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1341
+++ + A
Sbjct: 63 FFTSKKLVGSYGVNVQYF--------------------------EELAIPILERAYREAK 96
Query: 1342 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1401
KV+ +DE + V+ + EI L
Sbjct: 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV 156
Query: 1402 LVEQG 1406
L+E
Sbjct: 157 LIELT 161
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 66.6 bits (161), Expect = 5e-13
Identities = 15/178 (8%), Positives = 40/178 (22%), Gaps = 17/178 (9%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYD 699
+ + GE G GK++L+ I+ + +RD +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRTGF 47
Query: 700 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759
+E K + + + A A + ++D+
Sbjct: 48 RIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDE 107
Query: 760 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSS 817
+ ++ H + + + + +
Sbjct: 108 I--GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 16/171 (9%), Positives = 46/171 (26%), Gaps = 9/171 (5%)
Query: 1222 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1281
V + G G GK+++++ + G + + R + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1282 SLRDNLDPFHMNDDLKIWSVLEK--------CHVKEEVEAVGLETFVKESGISFSVGQRQ 1333
+ + L + G V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1384
I R L + + L + ++++ + + + +T +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 33/307 (10%), Positives = 84/307 (27%), Gaps = 10/307 (3%)
Query: 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFF 335
Y Y ++ ++ I PLL+ I + + D V + + + L F
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 336 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 395
+ + L +S + + + V + ++ +
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 396 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 455
+ I + + + F + +T+ + + + + ++ K E
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 456 RIRRTGEILTHIR---------TLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506
R + E+ + + + T TR ++
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 507 FWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISI 566
T + G + + + + + L PL L +F S+
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 567 RRLTRFL 573
R+ + +
Sbjct: 312 DRVFQLI 318
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 31/300 (10%), Positives = 78/300 (26%), Gaps = 3/300 (1%)
Query: 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTSILKSF 334
+ I G+ ++N + LL L+ F + L L + + +
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 335 FDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN 394
+ + Y K+ + + + V ++ + + + +
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 395 SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKD 454
IG+ + + Y + + + + I+ I + + +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 455 ERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTL 514
+ H L G E + + ++ +
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 515 FSL-FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFL 573
+ F + L A + + +L+ PL S V + + L L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 38.8 bits (89), Expect = 0.002
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 1222 VGIVGRTGAGKSSILNALFR------------LTPICGGQILVDGLNIINTPVRDLRGRF 1269
VG+VG GKS++L+ + L P G DG + + DL G
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVM---ADLPGLI 60
Query: 1270 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1306
Q L LR + + + + +
Sbjct: 61 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDP 97
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.8 bits (92), Expect = 0.002
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671
VAV GE GSGKSS +N++ G G+
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 90
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 39.4 bits (91), Expect = 0.002
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668
L LP+ + V+G SGKSS+L +I+G L GS
Sbjct: 22 LDLPQ---IVVVGSQSSGKSSVLENIVGRDFLPRGSG 55
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.5 bits (91), Expect = 0.002
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671
L LP+ +AV+G +GKSS+L + +G L GS +
Sbjct: 24 LDLPQ---IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 38.1 bits (87), Expect = 0.003
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 1222 VGIVGRTGAGKSSILNAL 1239
VG+VG AGKSS+L A+
Sbjct: 4 VGLVGYPNAGKSSLLAAM 21
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1428 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.9 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.61 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.5 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.32 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.17 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.08 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.79 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.68 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.63 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.49 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.43 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.21 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.92 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.61 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.55 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.5 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.46 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.16 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.14 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.06 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.05 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.02 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.96 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.9 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.67 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.47 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.42 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.32 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.14 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.11 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.09 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.09 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.08 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.07 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.04 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.98 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.98 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.97 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.97 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.84 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.79 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.77 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.31 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.28 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.23 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.21 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.1 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.09 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.01 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.87 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.82 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.77 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.74 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.69 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.64 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.6 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.59 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.58 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.57 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.56 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.54 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.44 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.44 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.4 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.35 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.34 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.33 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.33 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.32 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.32 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.25 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.19 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.07 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.03 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.0 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.97 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.94 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.88 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.88 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.87 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.74 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.65 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.49 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.48 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.46 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.45 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.41 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.3 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.25 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.25 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.25 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.04 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.0 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.96 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.92 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.8 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.8 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.76 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.73 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.61 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.59 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.58 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.52 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.48 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.45 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.45 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.42 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.41 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 91.34 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.29 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.23 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.05 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.03 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.02 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.0 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.92 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 90.87 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 90.87 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.84 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.73 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.68 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.65 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.61 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.51 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.51 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.51 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.49 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.42 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.39 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.29 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.17 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.1 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.04 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 89.99 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.97 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.94 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 89.87 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.87 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.8 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.8 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.8 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.77 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 89.75 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.75 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.72 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.61 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.47 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.45 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.43 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.4 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.38 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.36 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.34 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 89.29 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.18 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.16 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.15 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.11 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 89.1 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.07 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.96 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.96 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.86 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.85 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.84 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.82 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.81 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.75 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.72 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.67 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.66 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 88.65 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.64 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.48 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.47 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.46 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.3 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.2 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.1 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.99 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 87.96 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.94 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.94 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 87.8 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.6 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.59 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.59 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 87.5 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 87.48 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.44 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.4 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.25 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.24 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.14 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 87.12 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 87.1 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.09 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 87.09 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 87.07 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.01 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 86.99 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 86.92 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 86.68 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.63 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.59 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.59 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 86.55 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.54 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.47 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.45 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.42 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.24 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.21 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 86.17 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.1 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.04 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.95 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.94 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 85.94 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.91 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 85.9 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.79 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 85.76 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.7 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.61 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 85.6 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.54 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 85.35 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 85.35 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 85.33 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 85.25 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.2 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 85.18 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.17 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.14 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 85.07 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 85.07 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.01 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.99 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 84.91 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 84.83 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.74 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 84.73 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 84.72 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 84.42 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 84.36 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.31 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 84.31 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.29 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 84.22 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.19 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 84.16 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.15 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 84.09 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 84.06 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 84.0 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 83.99 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 83.97 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 83.95 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 83.89 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 83.88 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.82 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.8 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.77 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.75 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.71 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 83.7 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.69 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 83.67 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 83.66 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 83.65 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 83.62 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 83.55 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.49 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 83.46 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 83.37 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 83.29 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 83.28 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 83.27 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 83.24 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 83.19 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 83.16 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 83.13 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 83.04 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 82.99 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 82.99 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.93 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 82.9 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 82.88 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 82.84 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 82.84 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 82.74 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 82.6 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 82.54 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.44 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.44 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 82.4 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.39 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.38 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 82.27 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 82.25 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.19 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 82.13 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 82.13 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 82.05 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 81.95 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 81.91 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 81.91 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 81.9 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 81.9 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 81.82 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.79 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 81.78 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 81.69 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 81.63 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 81.45 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 81.41 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 81.4 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.32 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 81.27 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 81.21 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.11 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.11 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 80.96 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 80.95 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 80.94 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 80.87 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 80.87 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.86 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 80.79 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.72 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.66 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 80.6 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 80.54 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 80.46 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 80.34 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 80.3 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 80.27 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 80.24 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.15 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 80.07 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 80.03 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=485.32 Aligned_cols=237 Identities=35% Similarity=0.560 Sum_probs=228.4
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 19999999997799995202225997579599998799994899999983479899846999996179999376723508
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~ 1270 (1428)
.|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||+|++.++.+.+|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EEECCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 9807765567757883286999-9937899999980299999968--993153059999992499999999987269978
Q 000553 1271 VVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1347 (1428)
Q Consensus 1271 ~IpQdp~lf~gTIR~NLdp~~~-~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~I 1347 (1428)
+|||+|++|+||||+|+.++.. .++++++++++.+++.+++..+ |+++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHC
Q ss_conf 99846566989997999999999836994799861580366400979999498597866945885039938999998507
Q 000553 1348 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1348 LiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~~~g 1427 (1428)
||||||||++|..|++.|.+.|++..+++|+|+||||++++..||||+||++|+|+|.|+|++|++++++.|++|++.+.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q~ 240 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHHC
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHC
T ss_conf 55647765559899999999999985899899997889999849999999899999988999998299878999999813
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=484.08 Aligned_cols=241 Identities=31% Similarity=0.533 Sum_probs=230.0
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99861999999999779999520222599757959999879999489999998347989984699999617999937672
Q 000553 1187 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1266 (1428)
Q Consensus 1187 p~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR 1266 (1428)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEEECCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3508980776556775788328699-99937899999980299999968--99315305999999249999999998726
Q 000553 1267 GRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1267 ~~i~~IpQdp~lf~gTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlL~ 1343 (1428)
+++++|||+|.+|+||||+|+..+. ..+|++++++++.+++.+++..+ |+|+.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 99789984656698999799999999983699479986158036640097999949859786694588503993899999
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1423 (1428)
Q Consensus 1344 ~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~ 1423 (1428)
+|+|||||||||++|.+|+..|.+.|++..+++|+|+||||++.+..||||++|++|+|+|.|+|++|++++ +.|++||
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~-~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTT-SHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHH
T ss_conf 998999837654479779999999999875388899996899999859999999899999988999998688-4999999
Q ss_pred HHHCC
Q ss_conf 85079
Q 000553 1424 RASTM 1428 (1428)
Q Consensus 1424 ~~~g~ 1428 (1428)
+.+.+
T Consensus 251 ~~Q~l 255 (255)
T d2hyda1 251 SIQNL 255 (255)
T ss_dssp TTTTC
T ss_pred HHCCC
T ss_conf 97479
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=473.47 Aligned_cols=238 Identities=34% Similarity=0.535 Sum_probs=227.6
Q ss_pred CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 98619999999997799995202225997579599998799994899999983479899846999996179999376723
Q 000553 1188 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267 (1428)
Q Consensus 1188 ~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~ 1267 (1428)
..|.|+|+||+|+|++...++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.|||.|+++++.+.+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 50898077655677578832869--999937899999980299999968--99315305999999249999999998726
Q 000553 1268 RFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1268 ~i~~IpQdp~lf~gTIR~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlL~ 1343 (1428)
+++++||+|.+|++|+++|+..+ ...++++++++++.+++.++++.+ |||+.+++.|.+||||||||+||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 99789984656698999799999999983699479986158036640097999949859786694588503993899999
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1423 (1428)
Q Consensus 1344 ~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~ 1423 (1428)
+|+|||||||||++|.+|+..|.+.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|++|+++. +.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~-~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH-GVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHT-SSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHH
T ss_conf 998899516444589889999999998752278899998879999859999999899999988999998689-3999999
Q ss_pred HHH
Q ss_conf 850
Q 000553 1424 RAS 1426 (1428)
Q Consensus 1424 ~~~ 1426 (1428)
+.+
T Consensus 249 ~~Q 251 (253)
T d3b60a1 249 KMQ 251 (253)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=465.27 Aligned_cols=239 Identities=31% Similarity=0.448 Sum_probs=223.4
Q ss_pred CCCCCCEEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 9998619999999997799-995202225997579599998799994899999983479899846999996179999376
Q 000553 1186 WPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD 1264 (1428)
Q Consensus 1186 wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~ 1264 (1428)
++.+|.|+|+||+|+|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||+|+++++.+.
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred HHCCEEEEECCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 723508980776556775788328699--99937899999980299999968--99315305999999249999999998
Q 000553 1265 LRGRFAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARA 1340 (1428)
Q Consensus 1265 LR~~i~~IpQdp~lf~gTIR~NLdp~~--~~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARA 1340 (1428)
+|+++++|||+|.+|++|||+|+..+. ..++++++++.+++++.++++.+ |+++.+++.|.+||||||||++||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCH
Q ss_conf 7269978998465669899979999999998369--94799861580366400979999498597866945885039938
Q 000553 1341 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSV 1418 (1428)
Q Consensus 1341 lL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~--~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~ 1418 (1428)
++++|+|+|||||||++|..|+..|++.|++..+ ++|+|+|+||++.+..||||+||++|+|+|.|+|++|++++ +.
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~-~~ 244 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GC 244 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT-SH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CH
T ss_conf 45687078716757656853689999999997650698999995979999859999999899999988999998597-58
Q ss_pred HHHHHHH
Q ss_conf 9999985
Q 000553 1419 FSSFVRA 1425 (1428)
Q Consensus 1419 f~~l~~~ 1425 (1428)
|++|+++
T Consensus 245 y~~l~~A 251 (251)
T d1jj7a_ 245 YWAMVQA 251 (251)
T ss_dssp HHHHHCC
T ss_pred HHHHHCC
T ss_conf 8999629
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=469.06 Aligned_cols=234 Identities=32% Similarity=0.546 Sum_probs=221.7
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 19999999997799995202225997579599998799994899999983479899846999996179999376723508
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~ 1270 (1428)
.|+++||+|+|++ .+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.|||.|+++++.+.+|++++
T Consensus 1 mle~knvsf~Y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 1 MLSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp CEEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 9799988998799-984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 98077655677578832869--999937899999980299999968--99315305999999249999999998726997
Q 000553 1271 VVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~IpQdp~lf~gTIR~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ 1346 (1428)
+|||+|.+|+||||+|+..+ ...++++++++++.+++.+++..+ ++++.++++|.+||||||||+|||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 89984656698999799999999983699479986158036640097999949859786694588503993899999850
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1347 ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~~~ 1426 (1428)
||+||||||++|.+++..|++.|++..+++|+|+|+||++.+..||||+||++|+|+|.|+|+||++++ +.|++|++++
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~-~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH-PLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHC-HHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-HHHHHHHHHH
T ss_conf 999658865569889999988788871799899997879999849999999899999999999998689-6999999998
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=408.26 Aligned_cols=214 Identities=26% Similarity=0.401 Sum_probs=201.4
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49997117860578853335540100147419979999968998378999998737567870899809------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g------------ 672 (1428)
.|+++|++|+|+.+. .++ |+|+||+|++|+.++|+|++|||||||+++|+|.+++.+|+|.++|
T Consensus 1 eI~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 76 (241)
T d2pmka1 1 DITFRNIRFRYKPDS-PVI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76 (241)
T ss_dssp EEEEEEEEEESSTTS-CEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CEEEEEEEEEECCCC-CCE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHH
T ss_conf 929999999908999-603---7424899849999999999999899999999735788888999999994400246553
Q ss_pred -CEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -1999838987884018999704999-99688999999823128884045997530268977665089999999998813
Q 000553 673 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1428)
Q Consensus 673 -~iayv~Q~pWl~n~TIreNIlfg~~-~d~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~ 750 (1428)
.++||+|+||++++||+|||.++.+ .+.+++..+++.|.+.+++..+|+|.+|.+|++|.+|||||||||+||||++.
T Consensus 77 ~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~ 156 (241)
T d2pmka1 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156 (241)
T ss_dssp HHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 52889824465578400035223575543888999999975578887632013443278788669889898754434441
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 99988871784201099999999984218566896499982683102008989999397699932967887400
Q 000553 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSL 824 (1428)
Q Consensus 751 ~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~ 824 (1428)
+|+|+|||||+|+||+.+++.|++. +.. +.+++|+|+|||+++.+..||+|++|++|+|++.|+++++..+.
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~ 228 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRN-MHK-ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP 228 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHH-HHH-HHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHST
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHH-HHH-HHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 6513556477655598999999999-999-85899899997889999849999999899999988999998299
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=411.02 Aligned_cols=222 Identities=28% Similarity=0.401 Sum_probs=205.2
Q ss_pred CCCEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98549997117860578853335540100147419979999968998378999998737567870899809---------
Q 000553 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1428)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g--------- 672 (1428)
....|+++|++|+|+.+. .++ |+|+||+|++|+.++|+|++|||||||++.|+|.+++.+|+|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCEEEEEEEEEEECCCC-CCC---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 788799998899959999-760---6443899839989999889998099999999712786300015399875307888
Q ss_pred ----CEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----1999838987884018999704999-99688999999823128884045997530268977665089999999998
Q 000553 673 ----SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1428)
Q Consensus 673 ----~iayv~Q~pWl~n~TIreNIlfg~~-~d~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARA 747 (1428)
.++||+|+||++++||||||.||.+ .++++..++++.|++.+++..+|+|.+|.+|++|.+|||||||||+||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 86341456510156899879999851586799999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCCC
Q ss_conf 81399988871784201099999999984218566896499982683102008989999397699932967887400367
Q 000553 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSG 827 (1428)
Q Consensus 748 lY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~~~~ 827 (1428)
+|.+|+|++||||+|+||+++++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|++.|+++|+.+..+.+
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~-l~~-l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y 246 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEA-LDV-LSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHH-HHH-HTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
T ss_conf 8559989998376544797799999999-998-75388899996899999859999999899999988999998688499
Q ss_pred CC
Q ss_conf 65
Q 000553 828 FW 829 (1428)
Q Consensus 828 ~~ 829 (1428)
.+
T Consensus 247 ~~ 248 (255)
T d2hyda1 247 EH 248 (255)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=404.45 Aligned_cols=223 Identities=28% Similarity=0.391 Sum_probs=206.2
Q ss_pred CCCEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98549997117860578853335540100147419979999968998378999998737567870899809---------
Q 000553 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1428)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g--------- 672 (1428)
....|+++|++|+|+... .+. |+|+||+|++|+.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 10 ~~g~I~~~nvsf~Y~~~~-~~~---L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGRE-VPA---LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CCEEEEEEEEEEEECCCC-CCE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 830799998899929999-763---5332899859999999999998599999998621688846898788012111066
Q ss_pred ----CEEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ----199983898788401899970499--99968899999982312888404599753026897766508999999999
Q 000553 673 ----SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1428)
Q Consensus 673 ----~iayv~Q~pWl~n~TIreNIlfg~--~~d~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLAR 746 (1428)
.++||+|+|+++++|+++|+.++. .++.++..++++.|++.++++.+|+|.+|.+|++|.+|||||||||+|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 54206879950254478620243320572208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 88139998887178420109999999998421856689649998268310200898999939769993296788740036
Q 000553 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYS 826 (1428)
Q Consensus 747 AlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~~~ 826 (1428)
|+|.+|+|++||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|+++|+++|+++..+.
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~ 243 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAA-LDE-LQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 243 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHH-HHH-HHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCH
T ss_conf 99549988995164445898899999999-987-5227889999887999985999999989999998899999868939
Q ss_pred CCCC
Q ss_conf 7655
Q 000553 827 GFWS 830 (1428)
Q Consensus 827 ~~~~ 830 (1428)
+.++
T Consensus 244 y~~l 247 (253)
T d3b60a1 244 YAQL 247 (253)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=397.05 Aligned_cols=222 Identities=24% Similarity=0.313 Sum_probs=200.9
Q ss_pred CCCEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98549997117860578853335540100147419979999968998378999998737567870899809---------
Q 000553 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1428)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g--------- 672 (1428)
-+..|+++|++|+|+...+.+. |+|+||+|++|+.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~ 84 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLV---LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHR 84 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHH
T ss_pred CCCEEEEEEEEEECCCCCCCEE---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHH
T ss_conf 5336999998998899999976---7443899849989999999998499999998614378768998899853110137
Q ss_pred ----CEEEECCCCCCCCCCHHHHHHCCCCC--CHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ----19998389878840189997049999--968899999982312888404599753026897766508999999999
Q 000553 673 ----SIAYVPQVPWILSGTIRDNILFGKNY--DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1428)
Q Consensus 673 ----~iayv~Q~pWl~n~TIreNIlfg~~~--d~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLAR 746 (1428)
.++||+|+|+++++||+|||.+|... +..+.....+.+++.+.++.+|+|.+|.+|++|.+|||||||||+|||
T Consensus 85 ~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 85 YLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALAR 164 (251)
T ss_dssp HHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEE
T ss_conf 88877654045650027634655454210130278899999999899999856121113675167668954704899860
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 8813999888717842010999999999842185668--96499982683102008989999397699932967887400
Q 000553 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSL 824 (1428)
Q Consensus 747 AlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~ 824 (1428)
|++++|+|++||||+|+||+++++.|++. +.. +.+ ++|+|++||+++.+..||+|++|++|+|+++|+++|+.+..
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~-l~~-l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQL-LYE-SPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHT-CGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 44568707871675765685368999999-999-7650698999995979999859999999899999988999998597
Q ss_pred CCCC
Q ss_conf 3676
Q 000553 825 YSGF 828 (1428)
Q Consensus 825 ~~~~ 828 (1428)
+.+.
T Consensus 243 ~~y~ 246 (251)
T d1jj7a_ 243 GCYW 246 (251)
T ss_dssp SHHH
T ss_pred CHHH
T ss_conf 5889
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=395.66 Aligned_cols=214 Identities=36% Similarity=0.635 Sum_probs=197.8
Q ss_pred CCEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC
Q ss_conf 85499971178605788533355401001474199799999689983789999987375678708998091999838987
Q 000553 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682 (1428)
Q Consensus 603 ~~~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pW 682 (1428)
+..+.++|.+|. ..|+ |+|+||+|++|++++|+||+|||||||+++|+|.+++.+|+|.++|+++||+|.||
T Consensus 36 ~~~i~~~~~~~~-----g~pv---L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~ 107 (281)
T d1r0wa_ 36 ENNVSFSHLCLV-----GNPV---LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 107 (281)
T ss_dssp ----CHHHHHHT-----TCEE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCC
T ss_pred CCCEEEEECCCC-----CCEE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
T ss_conf 896799976989-----9767---73759998599999999899982999999995797478828999999999816430
Q ss_pred CCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 88401899970499999688999999823128884045997530268977665089999999998813999888717842
Q 000553 683 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 762 (1428)
Q Consensus 683 l~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lS 762 (1428)
++++||+|||.||..+++.+++.++++|.+..|+..+|+|+.|.+|++|.+|||||||||+||||++++|+|++||||+|
T Consensus 108 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 108 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp CCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 26760321420333456057999999977699998461233235555423779999999999999986963513338554
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 010999999999842185668964999826831020089899993976999329678874003
Q 000553 763 AVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLY 825 (1428)
Q Consensus 763 aLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~~ 825 (1428)
+||+.+.+.|++.++.. +.+++|+|++||+++.+..||+|++|++|+|++.|+++|++...+
T Consensus 188 ~LD~~~~~~i~~~~~~~-~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~ 249 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCK-LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 249 (281)
T ss_dssp SSCHHHHHHHHHHCCCC-CTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHH-HHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCC
T ss_conf 48989999999999988-628999999925289998599999998999999878999960594
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=397.43 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=200.3
Q ss_pred EEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-------------
Q ss_conf 9997117860578853335540100147419979999968998378999998737567870899809-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g------------- 672 (1428)
++++|++|+|+.+ ++. |+|+||++++|+.++|+||+|||||||++.|+|.++|.+|+|.++|
T Consensus 2 le~knvsf~Y~~~--~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 76 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQI---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76 (242)
T ss_dssp EEEEEEEECSSSS--SCS---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred EEEEEEEEECCCC--CCE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHH
T ss_conf 7999889987999--841---42258998599999999999997999999999960989877988998844246788874
Q ss_pred CEEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 199983898788401899970499--999688999999823128884045997530268977665089999999998813
Q 000553 673 SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1428)
Q Consensus 673 ~iayv~Q~pWl~n~TIreNIlfg~--~~d~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~ 750 (1428)
.|+||+|+|+++++||+|||.++. ..+.+...++++.+.+...+..+|+|.+|.+|++|.+|||||||||+||||++.
T Consensus 77 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~ 156 (242)
T d1mv5a_ 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (242)
T ss_dssp TCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred HEEEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 36797566545785345430124455542356778999997555420374210152368789879999999999999852
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCCCCC
Q ss_conf 9998887178420109999999998421856689649998268310200898999939769993296788740036765
Q 000553 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFW 829 (1428)
Q Consensus 751 ~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~~~~~~ 829 (1428)
+|+|++||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|+++|+++|+.+..+.+.+
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~ 233 (242)
T d1mv5a_ 157 NPKILMLDEATASLDSESESMVQKA-LDS-LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAK 233 (242)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHH-HHH-HHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHH
T ss_conf 9989996588655698899999887-888-7179989999787999984999999989999999999999868969999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=390.45 Aligned_cols=218 Identities=26% Similarity=0.372 Sum_probs=197.1
Q ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 86199999999977999952022259975795999987999948999999834798998469999961799993767235
Q 000553 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268 (1428)
Q Consensus 1189 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~ 1268 (1428)
.+.|+|+|+++. ..|||+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHT----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCC----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 896799976989----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 0898077655677578832869999937899999980299999968--99315305999999249999999998726997
Q 000553 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1269 i~~IpQdp~lf~gTIR~NLdp~~~~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ 1346 (1428)
++++||+|.+|++|||+|+.++..+++.+++++++.+++.+.+..+ ++++.+++.|.+||||||||++|||||+++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHH
Q ss_conf 8998465669899979999999-99836994799861580366400979999498597866945885039938999998
Q 000553 1347 VLCLDECTANVDAQTASILQNA-ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1424 (1428)
Q Consensus 1347 ILiLDEaTs~lD~~Te~~I~~~-i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~ 1424 (1428)
||+||||||++|..|+..+.+. +....+++|+|+|+||++.+..||||++|++|++++.|+|+||++.. +.|.+.+.
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~-~~~~~~~~ 256 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR-PDFSSKLM 256 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC-HHHHHHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCC-CHHHHHHC
T ss_conf 5133385544898999999999998862899999992528999859999999899999987899996059-48999872
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.9e-43 Score=353.39 Aligned_cols=222 Identities=24% Similarity=0.346 Sum_probs=193.4
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 19999999997799995202225997579599998799994899999983479899846999996179999376723508
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~ 1270 (1428)
.|+++|++.+|+. ..+|+||||+|++||.+||+|+||||||||++++.|+++|++|+|.+||.|+++.+.. |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EEECCCCCCCC-CHHHHCCCCCC---CCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 98077655677-57883286999---993789999998029999996899315305999999249999999998726997
Q 000553 1271 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1271 ~IpQdp~lf~g-TIR~NLdp~~~---~sd~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ 1346 (1428)
+|||+|.+|+. |+++|+..+.. .+.+++.+. ..+..+.+||+...+.....||||||||++|||||..+|+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 98003353422209999999998739999999999-----9999987598556609954699999889999766404998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHHH
Q ss_conf 899846566989997999999999836--99479986158036640-0979999498597866945885039938999
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSS 1421 (1428)
Q Consensus 1347 ILiLDEaTs~lD~~Te~~I~~~i~~~f--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~ 1421 (1428)
||+||||||++|+.+...|++.|++.. .++|+|+|+|+++.+.. ||||++|++|++++.|+|+++.++|...|-+
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~~ 234 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHH
T ss_conf 243068866689899989999999998731980799948999999869999999899999985999998689998999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.8e-43 Score=353.63 Aligned_cols=214 Identities=25% Similarity=0.415 Sum_probs=188.1
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 99999999977999952022259975795999987999948999999834798998469999961799993767235089
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~ 1271 (1428)
|+++|++.+|+. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+++.+.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred EECCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8077655677-578832869----99993789999998029999996899315305999999249999999998726997
Q 000553 1272 VPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1346 (1428)
Q Consensus 1272 IpQdp~lf~g-TIR~NLdp~----~~~sd~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ 1346 (1428)
|||+|.+|+. |+++|+..+ +...++++.++++.++ ++.........||||||||++|||||+.+|+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK---------IEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTT---------CTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC---------CHHHHHCCHHHCCHHHHCCHHHHHHHHCCCC
T ss_conf 5121111746657788888776405538999999999825---------6555758955479998401403043443677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 899846566989997999999999836--99479986158036640-09799994985978669458850399389
Q 000553 1347 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1419 (1428)
Q Consensus 1347 ILiLDEaTs~lD~~Te~~I~~~i~~~f--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f 1419 (1428)
||+|||||+++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|.+|++++.|+|++++++|...+
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 1443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=6.7e-44 Score=356.91 Aligned_cols=225 Identities=25% Similarity=0.355 Sum_probs=190.7
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 19999999997799995202225997579599998799994899999983479899846999996179999---376723
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRG 1267 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~LR~ 1267 (1428)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEEECCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 50898077655677-5788328699---9993789999998029999996899315305999999249999999998726
Q 000553 1268 RFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1268 ~i~~IpQdp~lf~g-TIR~NLdp~~---~~sd~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~ 1343 (1428)
++++|+|+|.+|+. |+++|+...- ..+.++..+. ..+..+.+||+.........||||||||++|||||..
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~ 157 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK 157 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999-----9999866591766648954599999858998757760
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 997899846566989997999999999836--99479986158036640-097999949859786694588503993899
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420 (1428)
Q Consensus 1344 ~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~ 1420 (1428)
+|+||++||||+++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|++++++|...|-
T Consensus 158 ~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~ 237 (242)
T d1oxxk2 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (242)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 46614544786679989988998999999863598799997999999996999999989999998699999868999799
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-43 Score=353.06 Aligned_cols=216 Identities=27% Similarity=0.389 Sum_probs=188.0
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 99999999977999952022259975795999987999948999999834798998469999961799993767235089
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~ 1271 (1428)
|+++||+++|++ ..+|+||||+|++||.+||+|+||||||||++++.|+++|++|+|.+||.|+++.+.. |+++++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEEE
T ss_conf 999999999899--9998111778869989999989998299999999658788888899999977888644--432223
Q ss_pred EECCCCCCCC-CHHHHCCCCCCC---C----HHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8077655677-578832869999---9----3789999998029999996899315305999999249999999998726
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFHMN---D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1343 (1428)
Q Consensus 1272 IpQdp~lf~g-TIR~NLdp~~~~---s----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~ 1343 (1428)
|||+|.+|+. |+++|+..+... + ++++.++++.+++.+ ........||||||||++|||||+.
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~---------~~~~~~~~LSGGqkQRvaiAraL~~ 147 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH---------LLDRKPKALSGGQRQRVAIGRTLVA 147 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC------------------------------CHHHHHHT
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH---------HHHCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 4334202643337889789998759988999999999997578865---------6648965699999999999999703
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 997899846566989997999999999836--99479986158036640-097999949859786694588503993899
Q 000553 1344 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1420 (1428)
Q Consensus 1344 ~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~ 1420 (1428)
+|++|+|||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|++++++|...|-
T Consensus 148 ~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v 227 (232)
T d2awna2 148 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227 (232)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHH
T ss_conf 99889975888788988998999999999874298799994899999996999999979999998089999738999799
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.8e-43 Score=351.00 Aligned_cols=219 Identities=22% Similarity=0.329 Sum_probs=188.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 19999999997799995202225997579599998799994899999983479899846999996179999376----72
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD----LR 1266 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~----LR 1266 (1428)
.|+++||+.+|+. ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCEEEEECCCCCCCC-CHHHHCCCC---CCCCHHH----HHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 350898077655677-578832869---9999378----99999980299999968993153059999992499999999
Q 000553 1267 GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1267 ~~i~~IpQdp~lf~g-TIR~NLdp~---~~~sd~e----i~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LA 1338 (1428)
+++++|||+|.+|+. |+++|+... ...+.++ +.+.++.+ ||..........||||||||++||
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~---------~l~~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL---------GLTELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH---------TCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCHHHHCCCHHHCCHHHHHHHHHH
T ss_conf 55120022122231011667633068772999899999999999875---------996676299334999999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 98726997899846566989997999999999836--99479986158036640-0979999498597866945885039
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1339 RAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~ 1415 (1428)
|||..+|+||+|||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|++++++|
T Consensus 152 raL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P 231 (240)
T d1g2912 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231 (240)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 99826998898258876569899989999999998636988999959999999969999999899999985999998289
Q ss_pred CCHHH
Q ss_conf 93899
Q 000553 1416 CSVFS 1420 (1428)
Q Consensus 1416 ~s~f~ 1420 (1428)
...|-
T Consensus 232 ~~~~~ 236 (240)
T d1g2912 232 ANTFV 236 (240)
T ss_dssp SBHHH
T ss_pred CCHHH
T ss_conf 99898
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-43 Score=351.74 Aligned_cols=219 Identities=23% Similarity=0.368 Sum_probs=188.6
Q ss_pred EEEEEEEEEECCCCC--CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 999999999779999--5202225997579599998799994899999983479899846999996179999376---72
Q 000553 1192 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1266 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---LR 1266 (1428)
|+++|++.+|+.+.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEEECCCCCCCC-CHHHHCCCC---CCCCH----HHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 350898077655677-578832869---99993----7899999980299999968993153059999992499999999
Q 000553 1267 GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1338 (1428)
Q Consensus 1267 ~~i~~IpQdp~lf~g-TIR~NLdp~---~~~sd----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LA 1338 (1428)
+++++|||+|-+|+. |+++|+... ...+. +++.++|+.++ |+.........||||||||++||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vg---------L~~~~~~~~~~LSGG~~QRvaiA 152 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG---------LGDKHDSYPSNLSGGQKQRVAIA 152 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHS---------TTTTTSSCBSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---------CCHHHHCCHHHCCHHHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769---------90355489434999999899986
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 98726997899846566989997999999999836--99479986158036640-0979999498597866945885039
Q 000553 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1339 RAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~ 1415 (1428)
|||..+|++|++||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|++++++|
T Consensus 153 raL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P 232 (240)
T d3dhwc1 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 232 (240)
T ss_dssp HHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSS
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 40105898687446556589888567999999998646978999838999999869999999799999987999997289
Q ss_pred CCHH
Q ss_conf 9389
Q 000553 1416 CSVF 1419 (1428)
Q Consensus 1416 ~s~f 1419 (1428)
...|
T Consensus 233 ~~~~ 236 (240)
T d3dhwc1 233 KTPL 236 (240)
T ss_dssp CCTT
T ss_pred CCHH
T ss_conf 9857
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-42 Score=344.80 Aligned_cols=223 Identities=24% Similarity=0.371 Sum_probs=187.8
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 199999999977999952022259975795999987999948999999834798998469999961799993--------
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-------- 1262 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-------- 1262 (1428)
.|+++|++.+|+. ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHCCEEEEECCCCCCCC-CHHHHCCCC----CCCCHHH----HHHHHHHCCHHHHHHHCCCCHHHH-CCCCCC
Q ss_conf -----7672350898077655677-578832869----9999378----999999802999999689931530-599999
Q 000553 1263 -----RDLRGRFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVK-ESGISF 1327 (1428)
Q Consensus 1263 -----~~LR~~i~~IpQdp~lf~g-TIR~NLdp~----~~~sd~e----i~~aL~~~~L~~~i~~lgLdt~v~-e~G~~L 1327 (1428)
...|+++++|+|+|-+|+. |+++|+..+ ...+..+ +.++++.+ |+..... .....|
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~p~~L 150 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV---------GIDERAQGKYPVHL 150 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT---------TCCHHHHTSCGGGS
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCCHHHHCCCCCCC
T ss_conf 176799974544899833231411010213656578762999899999999999982---------99524430682205
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEE
Q ss_conf 9249999999998726997899846566989997999999999836-99479986158036640-097999949859786
Q 000553 1328 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQ 1405 (1428)
Q Consensus 1328 S~GQrQll~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~ 1405 (1428)
||||+||++|||||..+|++|++||||+++|+.+...|.+.|++.. ++.|+|+|+|+++.+.. ||||+||.+|+|+|.
T Consensus 151 SGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~ 230 (258)
T d1b0ua_ 151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 230 (258)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 67788898999998439987885245556887888899876554103688338994899999986999999979999998
Q ss_pred CCHHHHHCCCCCHHH-HHHH
Q ss_conf 694588503993899-9998
Q 000553 1406 GNPQTLLQDECSVFS-SFVR 1424 (1428)
Q Consensus 1406 g~p~~Ll~~~~s~f~-~l~~ 1424 (1428)
|+|++++++|...|- +++.
T Consensus 231 g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 231 GDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp ECHHHHHHSCCSHHHHHHHH
T ss_pred CCHHHHHHCCCCHHHHHHHH
T ss_conf 49999983899999999881
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.7e-42 Score=344.35 Aligned_cols=213 Identities=25% Similarity=0.340 Sum_probs=177.9
Q ss_pred EEEEEEEEEECCCCC--CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 999999999779999--52022259975795999987999948999999834798998469999961799993767----
Q 000553 1192 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL---- 1265 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~L---- 1265 (1428)
|+++||+++|+.+.. .+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEEECCCCCCCC-CHHHHCCC---C---CCCCHHHHHHHHHHCCHHHHHHHCCCCHHH-HCCCCCCCHHHHHHHHH
Q ss_conf 2350898077655677-57883286---9---999937899999980299999968993153-05999999249999999
Q 000553 1266 RGRFAVVPQSPFLFEG-SLRDNLDP---F---HMNDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICL 1337 (1428)
Q Consensus 1266 R~~i~~IpQdp~lf~g-TIR~NLdp---~---~~~sd~ei~~aL~~~~L~~~i~~lgLdt~v-~e~G~~LS~GQrQll~L 1337 (1428)
|+++++|+|+|.+|+. |+++|+.. . ...+.++..+. ..+.++..||.... ......||||||||++|
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaI 156 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHH
T ss_conf 5557788041241768668887757888722478999999999-----99988762423455348802389999999998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHH
Q ss_conf 998726997899846566989997999999999836--994799861580366400979999498597866945
Q 000553 1338 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1409 (1428)
Q Consensus 1338 ARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f--~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~ 1409 (1428)
||||..+|+||++|||||+||+.+...|++.|++.. .++|+|+|+|+++...-||||++|++|+|+|.|+++
T Consensus 157 AraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~r 230 (230)
T d1l2ta_ 157 ARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (230)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCC
T ss_conf 75652278889946876546989999999999999984399999987888999869989999899999952579
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3e-41 Score=336.13 Aligned_cols=219 Identities=24% Similarity=0.386 Sum_probs=191.7
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 61999999999779999520222599757959999879999489999998347989984699999617999937672350
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i 1269 (1428)
|+|+++|++.+|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+. ...+|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEEECCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 898077655677-5788328699---999378999999802999999689931530599999924999999999872699
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1345 (1428)
Q Consensus 1270 ~~IpQdp~lf~g-TIR~NLdp~~---~~sd~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~~~ 1345 (1428)
+++||++.+|+. |+++|+..+. ..++.++++..++. .+.++|+.........||+|||||++|||||+.+|
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p 152 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 152 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 6750015468786677888989986179989999999999-----98679788885045337998989999999986599
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCC
Q ss_conf 7899846566989997999999999836-99479986158036640-09799994985978669458850399
Q 000553 1346 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1416 (1428)
Q Consensus 1346 ~ILiLDEaTs~lD~~Te~~I~~~i~~~f-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~ 1416 (1428)
+||+|||||++||+.+...|++.|++.. ++.|||+++|+++.+.. ||||++|++|++++.|+|+++.++.+
T Consensus 153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 153 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 9887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.4e-41 Score=334.81 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=185.2
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 619999999997799995202225997579599998799994899999983479899846999996179999376723-5
Q 000553 1190 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG-R 1268 (1428)
Q Consensus 1190 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~-~ 1268 (1428)
-.++++|++.+|+. ..+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEEECCCCCCCC-CHHHHCCCCC--CCCHHHHHHHHHHCCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 0898077655677-5788328699--99937899999980299999968-993153059999992499999999987269
Q 000553 1269 FAVVPQSPFLFEG-SLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1269 i~~IpQdp~lf~g-TIR~NLdp~~--~~sd~ei~~aL~~~~L~~~i~~l-gLdt~v~e~G~~LS~GQrQll~LARAlL~~ 1344 (1428)
++++||++.+|+. |+++|+.... ....++..+.++.+ ...+ +++.........||||||||++|||||..+
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~ 157 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHHC
T ss_conf 3556765545776369999998887327888999999999-----98741768887585433899999999999999829
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 97899846566989997999999999836-99479986158036640-0979999498597866945885039
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1345 ~~ILiLDEaTs~lD~~Te~~I~~~i~~~f-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~ 1415 (1428)
|++|+|||||+++|+.+...+.+.|++.. +++|+|+|+|+++.+.. ||||+||++|++++.|+|+++++++
T Consensus 158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 9874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3e-41 Score=336.18 Aligned_cols=217 Identities=22% Similarity=0.357 Sum_probs=184.0
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-E
Q ss_conf 199999999977999952022259975795999987999948999999834798998469999961799993767235-0
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR-F 1269 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~-i 1269 (1428)
.++++|++.+|+. ..+|+||||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+..+.+++ +
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEEECCCCCCCC-CHHHHCCCCCC----------------CCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHH
Q ss_conf 898077655677-57883286999----------------9937899999980299999968993153059999992499
Q 000553 1270 AVVPQSPFLFEG-SLRDNLDPFHM----------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1332 (1428)
Q Consensus 1270 ~~IpQdp~lf~g-TIR~NLdp~~~----------------~sd~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQr 1332 (1428)
+++||+|.+|++ |+++|+..... ..+++..+ ...+.++.++++...+....+||||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~ 156 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFLKLSHLYDRKAGELSGGQM 156 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHCCCCHHCCCCHHHCCCHHH
T ss_conf 725776424788742321430133303450456654213532899999-----999998761963020595356991888
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHH
Q ss_conf 9999999872699789984656698999799999999983-699479986158036640-09799994985978669458
Q 000553 1333 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1333 Qll~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~-f~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~ 1410 (1428)
||++|||||..+|++|+|||||+++|+.+...|.+.|++. -+++|||+|+|+++.+.. ||||+||++|++++.|+|+|
T Consensus 157 Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e 236 (254)
T d1g6ha_ 157 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236 (254)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHH
T ss_conf 89999999975927232439765699999999999999999789989999476999998699999996998999966899
Q ss_pred HHCC
Q ss_conf 8503
Q 000553 1411 LLQD 1414 (1428)
Q Consensus 1411 Ll~~ 1414 (1428)
+.++
T Consensus 237 ~~~~ 240 (254)
T d1g6ha_ 237 EIKN 240 (254)
T ss_dssp HHHH
T ss_pred HHHC
T ss_conf 8654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.6e-39 Score=320.94 Aligned_cols=219 Identities=24% Similarity=0.367 Sum_probs=181.5
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 99999999977999952022259975795999987999948999999834798998469999961799993767235089
Q 000553 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271 (1428)
Q Consensus 1192 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~ 1271 (1428)
+++ ++.-+|..- .+ ||||++. +|.+||+||||||||||+++|.|+++|++|+|.+||.|+..++.. |++|++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred EECCCCCCCC-CHHHHCCCCC-CCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 8077655677-5788328699-9993789999998029999996899315305999999249999999998726997899
Q 000553 1272 VPQSPFLFEG-SLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1349 (1428)
Q Consensus 1272 IpQdp~lf~g-TIR~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILi 1349 (1428)
+||+|.+|+. ||+||+...- ..+..+..+- ..+.++.+||+...+.....||||||||++|||||+.+|+||+
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ill 149 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 52314435220155766653233677889999-----9999986383756657944489999899999877751677067
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 846566989997999999999836--99479986158036640-097999949859786694588503993899999
Q 000553 1350 LDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1423 (1428)
Q Consensus 1350 LDEaTs~lD~~Te~~I~~~i~~~f--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~ 1423 (1428)
||||||++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|++++++++....+++
T Consensus 150 lDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 52865558879999999999999874397699981899999996999999989999999069998329988999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.8e-37 Score=302.54 Aligned_cols=199 Identities=28% Similarity=0.401 Sum_probs=169.9
Q ss_pred EEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------CE
Q ss_conf 9997117860578853335540100147419979999968998378999998737567870899809-----------19
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g-----------~i 674 (1428)
|+++|.+++|+. ... |+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++| .|
T Consensus 1 Iev~nv~k~yg~---~~~---l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~i 74 (232)
T d2awna2 1 VQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 74 (232)
T ss_dssp EEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCE
T ss_pred CEEEEEEEEECC---EEE---EEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEE
T ss_conf 999999999899---999---81117788699899999899982999999996587888888999999778886444322
Q ss_pred EEECCCCCCCCC-CHHHHHHCCCCCC-------HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 998389878840-1899970499999-------68899999982312888404599753026897766508999999999
Q 000553 675 AYVPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1428)
Q Consensus 675 ayv~Q~pWl~n~-TIreNIlfg~~~d-------~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLAR 746 (1428)
+||+|+|-++.. |++|||.|+.... +++-+++++...|.+-.+. ....|||||||||+|||
T Consensus 75 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-----------~~~~LSGGqkQRvaiAr 143 (232)
T d2awna2 75 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGR 143 (232)
T ss_dssp EEECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHC-----------CHHHCCHHHHHHHHHHH
T ss_conf 2343342026433378897899987599889999999999975788656648-----------96569999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC--CCCEEEEECCCCCHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 881399988871784201099999999984218566--89649998268310200-898999939769993296788740
Q 000553 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 747 AlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll--~~kTvIlvTh~~~~l~~-aD~Iivl~~G~i~~~G~~~~l~~~ 823 (1428)
|+..+|++++||||+|+||+.+.+.|++. +.. +. .++|+|++||+++.... ||+|++|++|+|++.|+++++...
T Consensus 144 aL~~~P~illlDEPts~LD~~~~~~i~~~-l~~-l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 144 TLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 97039988997588878898899899999-999-9874298799994899999996999999979999998089999738
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.5e-36 Score=299.25 Aligned_cols=200 Identities=26% Similarity=0.355 Sum_probs=170.3
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------C
Q ss_conf 49997117860578853335540100147419979999968998378999998737567870899809-----------1
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g-----------~ 673 (1428)
.|+++|.+++|+. ... |+|+||++++|++++|+||+|||||||++.|.|.+++++|+|.++| .
T Consensus 6 ~I~v~nlsk~yg~---~~a---l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ 79 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79 (239)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGT
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCE
T ss_conf 4999879999999---999---8130678879989999999998299999999758999878799916413547700015
Q ss_pred EEEECCCCCCCC-CCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999838987884-018999704999---996----889999998231288840459975302689776650899999999
Q 000553 674 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1428)
Q Consensus 674 iayv~Q~pWl~n-~TIreNIlfg~~---~d~----~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLA 745 (1428)
|+||+|+|-++. .||+||+.|+.. +++ ++-+++++.+.|++-. ......|||||||||+||
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-----------TSCTTTCCSSCHHHHHHH
T ss_pred EEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCHHHHHHHHHH
T ss_conf 899800335342220999999999873999999999999999875985566-----------099546999998899997
Q ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 98813999888717842010999999999842185668--964999826831020-089899993976999329678874
Q 000553 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 746 RAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~-~aD~Iivl~~G~i~~~G~~~~l~~ 822 (1428)
||+..+|+|++||||+|+||+.+.+.|++. +.. +.+ ++|+|++||+++... .||+|++|++|+|+++|+++++..
T Consensus 149 raL~~~P~iLllDEPts~LD~~~~~~i~~l-l~~-l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAE-IKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 664049982430688666898999899999-999-987319807999489999998699999998999999859999986
Q ss_pred C
Q ss_conf 0
Q 000553 823 S 823 (1428)
Q Consensus 823 ~ 823 (1428)
.
T Consensus 227 ~ 227 (239)
T d1v43a3 227 R 227 (239)
T ss_dssp C
T ss_pred C
T ss_conf 8
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.1e-36 Score=300.46 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=172.4
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49997117860578853335540100147419979999968998378999998737567870899809------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g------------ 672 (1428)
.|+++|.+.+|+.++ ... |+|+||++++|++++|+||+|||||||++.|.|-.++++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g~-~~a---L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGK-VVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGGGT-EEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEEEEEEECCCC-EEE---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCC
T ss_conf 899975799988999-899---8040789879989999989998099999999758688874599999995137311153
Q ss_pred ----CEEEECCCCCCCC-CCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ----1999838987884-018999704999---996----8899999982312888404599753026897766508999
Q 000553 673 ----SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1428)
Q Consensus 673 ----~iayv~Q~pWl~n-~TIreNIlfg~~---~d~----~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkq 740 (1428)
+|+|++|+|-++. -||+|||.|+.. .++ ++.+++++.+.|++.....| ..|||||||
T Consensus 79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQ 147 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQ 147 (242)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHH
T ss_pred HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHH
T ss_conf 120451477304334666657777665567613799999999999986659176664895-----------459999985
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHH-HCCCEEEEEECCEEEEECCH
Q ss_conf 9999998813999888717842010999999999842185668--96499982683102-00898999939769993296
Q 000553 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSS 817 (1428)
Q Consensus 741 RIaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l-~~aD~Iivl~~G~i~~~G~~ 817 (1428)
||+||||+..+|+++|+|||+|+||+.+...+++- +.. +.+ +.|+|++||+++.. ..||+|++|++|+|++.|++
T Consensus 148 RvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~-i~~-l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~ 225 (242)
T d1oxxk2 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARAL-VKE-VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225 (242)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH-HHH-HHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 89987577604661454478667998998899899-999-9863598799997999999996999999989999998699
Q ss_pred HHHHHC
Q ss_conf 788740
Q 000553 818 ADLAVS 823 (1428)
Q Consensus 818 ~~l~~~ 823 (1428)
+++...
T Consensus 226 ~el~~~ 231 (242)
T d1oxxk2 226 EDLYDN 231 (242)
T ss_dssp HHHHHS
T ss_pred HHHHHC
T ss_conf 999868
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.5e-36 Score=299.18 Aligned_cols=200 Identities=27% Similarity=0.351 Sum_probs=170.6
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49997117860578853335540100147419979999968998378999998737567870899809------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g------------ 672 (1428)
.|+++|.+.+|+. ... |+|+||++++|++++|+||+|||||||+++|.|...+++|+|.++|
T Consensus 3 ~i~v~nl~k~yg~---~~a---l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 76 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (240)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred CEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHC
T ss_conf 1899869999899---999---8560668869989999999998099999999648788989899999980356644424
Q ss_pred -----CEEEECCCCCCCCC-CHHHHHHCC---CCCCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf -----19998389878840-189997049---99996----889999998231288840459975302689776650899
Q 000553 673 -----SIAYVPQVPWILSG-TIRDNILFG---KNYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1428)
Q Consensus 673 -----~iayv~Q~pWl~n~-TIreNIlfg---~~~d~----~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQk 739 (1428)
+|+||+|+|-++.. ||+|||.++ ..++. ++-+++++.+.|.+-.. .....||||||
T Consensus 77 ~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqk 145 (240)
T d1g2912 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQR 145 (240)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHH
T ss_pred CCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHH
T ss_conf 5322551200221222310116676330687729998999999999998759966762-----------99334999999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHH-CCCEEEEEECCEEEEECC
Q ss_conf 99999998813999888717842010999999999842185668--964999826831020-089899993976999329
Q 000553 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 740 qRIaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~-~aD~Iivl~~G~i~~~G~ 816 (1428)
|||+||||+..+|++++||||+++||+.+...|.+. +.. +.+ +.|+|++||+++... .||+|++|++|+|++.|+
T Consensus 146 QRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~-l~~-l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 146 QRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE-LKK-LQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH-HHH-HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECC
T ss_conf 999999998269988982588765698999899999-999-986369889999599999999699999998999999859
Q ss_pred HHHHHHC
Q ss_conf 6788740
Q 000553 817 SADLAVS 823 (1428)
Q Consensus 817 ~~~l~~~ 823 (1428)
++|+...
T Consensus 224 ~~el~~~ 230 (240)
T d1g2912 224 PDEVYDK 230 (240)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
T ss_conf 9999828
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.4e-36 Score=299.50 Aligned_cols=198 Identities=25% Similarity=0.384 Sum_probs=170.8
Q ss_pred EEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------CE
Q ss_conf 9997117860578853335540100147419979999968998378999998737567870899809-----------19
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g-----------~i 674 (1428)
++++|.+++|+. .. |+|+||++++|++++|+||+|||||||+++|.|-+++++|+|.++| ++
T Consensus 2 i~v~nlsk~y~~----~a---L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~i 74 (229)
T d3d31a2 2 IEIESLSRKWKN----FS---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74 (229)
T ss_dssp EEEEEEEEECSS----CE---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC
T ss_pred EEEEEEEEEECC----EE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCC
T ss_conf 899989999499----78---84337898799899999899982999999996476888788999567346521657405
Q ss_pred EEECCCCCCCC-CCHHHHHHCCC----CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99838987884-01899970499----99968899999982312888404599753026897766508999999999881
Q 000553 675 AYVPQVPWILS-GTIRDNILFGK----NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1428)
Q Consensus 675 ayv~Q~pWl~n-~TIreNIlfg~----~~d~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY 749 (1428)
+|++|+|-++. -||+|||.|+. .-++++..++++...+.+..+ .....|||||||||+||||+.
T Consensus 75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~ 143 (229)
T d3d31a2 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALV 143 (229)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTT
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHH
T ss_conf 615121111746657788888776405538999999999825655575-----------895547999840140304344
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 3999888717842010999999999842185668--964999826831020-0898999939769993296788740
Q 000553 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 750 ~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~-~aD~Iivl~~G~i~~~G~~~~l~~~ 823 (1428)
.+|+++|||||+|+||+.+...+++. +.. +.+ +.|+|++||+++... .||+|++|++|++++.|+++++...
T Consensus 144 ~~P~iLllDEPts~LD~~~~~~i~~~-l~~-l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 144 TNPKILLLDEPLSALDPRTQENAREM-LSV-LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHH-HHH-HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 36771443478767998999999999-999-9864796899974999999996999999979999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-36 Score=295.80 Aligned_cols=203 Identities=28% Similarity=0.349 Sum_probs=170.1
Q ss_pred EEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-------------
Q ss_conf 9997117860578853335540100147419979999968998378999998737567870899809-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g------------- 672 (1428)
++++|.+.+|+.+.. ...+|+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 2 i~v~nlsk~y~~~~~--~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (240)
T d3dhwc1 2 IKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79 (240)
T ss_dssp EEEEEEEEEEECSSC--EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHH
T ss_pred EEEEEEEEEECCCCE--EEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHH
T ss_conf 799827999699981--489861505788699799998999898889999875886366773288676852087555115
Q ss_pred ---CEEEECCCCCCCCC-CHHHHHHCC-----CCCC--HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf ---19998389878840-189997049-----9999--688999999823128884045997530268977665089999
Q 000553 673 ---SIAYVPQVPWILSG-TIRDNILFG-----KNYD--PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1428)
Q Consensus 673 ---~iayv~Q~pWl~n~-TIreNIlfg-----~~~d--~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqR 741 (1428)
+++||+|+|-+++. ||+|||.++ .+-+ .++..+.++.+.|.+-.. .....||||||||
T Consensus 80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-----------~~~~~LSGG~~QR 148 (240)
T d3dhwc1 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQR 148 (240)
T ss_dssp HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-----------SCBSCCCHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH-----------CCHHHCCHHHHHH
T ss_conf 54166430225222799649999999999849998999999999999769903554-----------8943499999989
Q ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHH
Q ss_conf 999998813999888717842010999999999842185668--964999826831020-08989999397699932967
Q 000553 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1428)
Q Consensus 742 IaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~-~aD~Iivl~~G~i~~~G~~~ 818 (1428)
|+||||+..+|+++++|||+++||+.+.+.|++. +.. +.+ +.|+|++||+++... .||+|++|++|+|++.|+++
T Consensus 149 vaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~-l~~-l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ 226 (240)
T d3dhwc1 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL-LKD-INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 226 (240)
T ss_dssp HHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH-HHH-HHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETT
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 9986401058986874465565898885679999-999-98646978999838999999869999999799999987999
Q ss_pred HHHHC
Q ss_conf 88740
Q 000553 819 DLAVS 823 (1428)
Q Consensus 819 ~l~~~ 823 (1428)
++...
T Consensus 227 ei~~~ 231 (240)
T d3dhwc1 227 EVFSH 231 (240)
T ss_dssp TTTCS
T ss_pred HHHHC
T ss_conf 99728
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-36 Score=298.36 Aligned_cols=214 Identities=21% Similarity=0.298 Sum_probs=180.4
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 19999999997799995202225997579599998799994899999983479899846999996179999376723508
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~ 1270 (1428)
-++++||+.+| +|+||||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EEECCCCC-CCCCHHHHCCCCCCC-C-HHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC----
Q ss_conf 98077655-677578832869999-9-3789999998029999996899315305999999249999999998726----
Q 000553 1271 VVPQSPFL-FEGSLRDNLDPFHMN-D-DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK---- 1343 (1428)
Q Consensus 1271 ~IpQdp~l-f~gTIR~NLdp~~~~-s-d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~---- 1343 (1428)
+++|+... |..++.+|+..+... . .+.+.++++. ++++..++....+||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~ 146 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ 146 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHH---------TTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH---------CCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 4512135774420988764100146689999999986---------5987676768445699889999999999851713
Q ss_pred ---CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHCCCCCH
Q ss_conf ---99789984656698999799999999983-699479986158036640-0979999498597866945885039938
Q 000553 1344 ---SSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSV 1418 (1428)
Q Consensus 1344 ---~~~ILiLDEaTs~lD~~Te~~I~~~i~~~-f~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ivE~g~p~~Ll~~~~s~ 1418 (1428)
+|+|++|||||++||..+...+.+.|++. -+++|||+++|+++.+.. ||||++|++|++++.|+|++++.++ .
T Consensus 147 ~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~--~ 224 (231)
T d1l7vc_ 147 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP--N 224 (231)
T ss_dssp TCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH--H
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH--H
T ss_conf 38998899971877778989999999999999867999999967799999979999999799899988999981886--7
Q ss_pred HHHH
Q ss_conf 9999
Q 000553 1419 FSSF 1422 (1428)
Q Consensus 1419 f~~l 1422 (1428)
+.+.
T Consensus 225 l~~~ 228 (231)
T d1l7vc_ 225 LAQA 228 (231)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.7e-36 Score=298.90 Aligned_cols=198 Identities=24% Similarity=0.325 Sum_probs=161.8
Q ss_pred EEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-------------
Q ss_conf 9997117860578853335540100147419979999968998378999998737567870899809-------------
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g------------- 672 (1428)
|+++|.+++|+... ....+|+|+||++++|++++|+||+|||||||++.|.|-.++++|+|.++|
T Consensus 2 I~i~nlsk~y~~~~--~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (230)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEECCCC--EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCH
T ss_conf 89990799948998--2089871337788499799998899998216557506887777662699999857688555123
Q ss_pred ----CEEEECCCCCCCC-CCHHHHHHCCCC------CC-HHHHHHHHHH---HCCHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf ----1999838987884-018999704999------99-6889999998---2312888404599753026897766508
Q 000553 673 ----SIAYVPQVPWILS-GTIRDNILFGKN------YD-PQSYSETLKA---CTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1428)
Q Consensus 673 ----~iayv~Q~pWl~n-~TIreNIlfg~~------~d-~~~Y~~vi~a---C~L~~Di~~lp~GD~T~iGe~G~~LSGG 737 (1428)
.|+||+|+|-++. -||+||+.++.. ++ +++.+++.+. ..|.+.+ ....-..||||
T Consensus 80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~p~~LSGG 149 (230)
T d1l2ta_ 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGG 149 (230)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHH
T ss_pred HHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHH----------HCCCHHHCCHH
T ss_conf 12555778804124176866888775788872247899999999999988762423455----------34880238999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHHCCCEEEEEECCEEEEEC
Q ss_conf 9999999998813999888717842010999999999842185668--96499982683102008989999397699932
Q 000553 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1428)
Q Consensus 738 QkqRIaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~~aD~Iivl~~G~i~~~G 815 (1428)
|||||+||||+..+|++++||||+|+||+.+.+.|++- +.. +.+ ++|+|++||+++....||+|++|++|+|+++|
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-l~~-l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKK-LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEEC
T ss_conf 99999987565227888994687654698999999999-999-9984399999987888999869989999899999952
Q ss_pred CH
Q ss_conf 96
Q 000553 816 SS 817 (1428)
Q Consensus 816 ~~ 817 (1428)
+.
T Consensus 228 ~~ 229 (230)
T d1l2ta_ 228 KL 229 (230)
T ss_dssp EC
T ss_pred CC
T ss_conf 57
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.6e-35 Score=287.66 Aligned_cols=200 Identities=25% Similarity=0.309 Sum_probs=170.5
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49997117860578853335540100147419979999968998378999998737567870899809------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g------------ 672 (1428)
.++++|.+++|+. .+. |+|+||++++|++++|+||+|||||||+++|.|-.++++|+|.++|
T Consensus 2 ~Lev~nl~k~yg~---~~a---l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHH
T ss_conf 6999978999899---998---8150668869979999989998299999999747667899779999993367752000
Q ss_pred --------------CEEEECCCCCCCC-CCHHHHHHCC----CCCCH----HHHHHHHHHHCCHHHHH-CCCCCCCCCCC
Q ss_conf --------------1999838987884-0189997049----99996----88999999823128884-04599753026
Q 000553 673 --------------SIAYVPQVPWILS-GTIRDNILFG----KNYDP----QSYSETLKACTLDVDIS-LMVGGDMAYIG 728 (1428)
Q Consensus 673 --------------~iayv~Q~pWl~n-~TIreNIlfg----~~~d~----~~Y~~vi~aC~L~~Di~-~lp~GD~T~iG 728 (1428)
+++||+|+|-+++ .||.|||.++ ..+++ ++..++++.+.|.+... ..|
T Consensus 76 ~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-------- 147 (258)
T d1b0ua_ 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-------- 147 (258)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG--------
T ss_pred CCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC--------
T ss_conf 023517679997454489983323141101021365657876299989999999999998299524430682--------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC-CCCEEEEECCCCCHHH-CCCEEEEE
Q ss_conf 897766508999999999881399988871784201099999999984218566-8964999826831020-08989999
Q 000553 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVM 806 (1428)
Q Consensus 729 e~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll-~~kTvIlvTh~~~~l~-~aD~Iivl 806 (1428)
..|||||||||+||||+..+|++++||||+++||+.+.+.|++- +.. +. +++|+|++||+++.+. .||+|++|
T Consensus 148 ---~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~l-l~~-l~~~g~til~vtHdl~~~~~~adri~vm 222 (258)
T d1b0ua_ 148 ---VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI-MQQ-LAEEGKTMVVVTHEMGFARHVSSHVIFL 222 (258)
T ss_dssp ---GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCCCEEEEECCHHHHHHHCCEEEEE
T ss_conf ---20567788898999998439987885245556887888899876-554-1036883389948999999869999999
Q ss_pred ECCEEEEECCHHHHHHC
Q ss_conf 39769993296788740
Q 000553 807 DKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 807 ~~G~i~~~G~~~~l~~~ 823 (1428)
++|+|++.|+++|+...
T Consensus 223 ~~G~iv~~g~~~ev~~~ 239 (258)
T d1b0ua_ 223 HQGKIEEEGDPEQVFGN 239 (258)
T ss_dssp ETTEEEEEECHHHHHHS
T ss_pred ECCEEEEECCHHHHHHC
T ss_conf 79999998499999838
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=9.2e-35 Score=285.27 Aligned_cols=206 Identities=23% Similarity=0.351 Sum_probs=167.0
Q ss_pred CCCEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98549997117860578853335540100147419979999968998378999998737567870899809---------
Q 000553 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1428)
Q Consensus 602 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g--------- 672 (1428)
++..++++|.+++|+. ... |+|+||++++|++++++||+|||||||+++|.|.+++++|+|.++|
T Consensus 3 sd~~Lev~~l~k~yg~---~~a---l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA---IHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp CSEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred CCEEEEEEEEEEEECC---EEE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
T ss_conf 5607999618999899---888---8302578889979999999998599999999678888803898424434466088
Q ss_pred -----CEEEECCCCCCCCC-CHHHHHHCCCC--CCHHHHH-HHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -----19998389878840-18999704999--9968899-999982312888404599753026897766508999999
Q 000553 673 -----SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYS-ETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1428)
Q Consensus 673 -----~iayv~Q~pWl~n~-TIreNIlfg~~--~d~~~Y~-~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIa 743 (1428)
.++|++|++-++.. |++||+.++.. .+.+..+ ++.++..+...+... ......+||||||||++
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~LSGG~~Qrv~ 149 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTSBSSSSCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH-------HHCCHHHCCHHHHHHHH
T ss_conf 88874235567655457763699999988873278889999999999874176888-------75854338999999999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC-CCCEEEEECCCCCHH-HCCCEEEEEECCEEEEECCHHHHH
Q ss_conf 999881399988871784201099999999984218566-896499982683102-008989999397699932967887
Q 000553 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLA 821 (1428)
Q Consensus 744 LARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll-~~kTvIlvTh~~~~l-~~aD~Iivl~~G~i~~~G~~~~l~ 821 (1428)
||||+..+|++++||||+++||+...+.|++- +.. +. +++|+|++||+++.+ ..||+|++|++|++++.|+++|+.
T Consensus 150 iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~-i~~-l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEV-IQK-INQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH-HHH-HHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999829987400398867999999999999-999-9968998999958899999969999999899999984899984
Q ss_pred H
Q ss_conf 4
Q 000553 822 V 822 (1428)
Q Consensus 822 ~ 822 (1428)
.
T Consensus 228 ~ 228 (240)
T d1ji0a_ 228 D 228 (240)
T ss_dssp T
T ss_pred C
T ss_conf 2
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-34 Score=283.60 Aligned_cols=199 Identities=24% Similarity=0.312 Sum_probs=163.6
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49997117860578853335540100147419979999968998378999998737567870899809------------
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g------------ 672 (1428)
.++++|.+.+++. ... |+||||++++|++++++||+|||||||+++|.|.+++++|+|.++|
T Consensus 4 iL~v~nlsk~yg~---~~a---L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 77 (254)
T ss_dssp EEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHH
T ss_conf 6999778999799---688---7121799889979999999998499999999779768873799999966405699999
Q ss_pred --CEEEECCCCCCCC-CCHHHHHHCCCCC-----------------CHHHHHH---HHHHHCCHHHHHCCCCCCCCCCCC
Q ss_conf --1999838987884-0189997049999-----------------9688999---999823128884045997530268
Q 000553 673 --SIAYVPQVPWILS-GTIRDNILFGKNY-----------------DPQSYSE---TLKACTLDVDISLMVGGDMAYIGE 729 (1428)
Q Consensus 673 --~iayv~Q~pWl~n-~TIreNIlfg~~~-----------------d~~~Y~~---vi~aC~L~~Di~~lp~GD~T~iGe 729 (1428)
.|+|++|+|-++. -||+|||.+|... +++..++ +++...+... ...
T Consensus 78 ~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~ 146 (254)
T d1g6ha_ 78 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDR 146 (254)
T ss_dssp HHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTS
T ss_pred HHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-----------CCC
T ss_conf 833872577642478874232143013330345045665421353289999999999876196302-----------059
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC-CCCCEEEEECCCCCHH-HCCCEEEEEE
Q ss_conf 9776650899999999988139998887178420109999999998421856-6896499982683102-0089899993
Q 000553 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAI-SAADMVVVMD 807 (1428)
Q Consensus 730 ~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~l-l~~kTvIlvTh~~~~l-~~aD~Iivl~ 807 (1428)
...+|||||||||+||||+..+|++++||||+++||+...+.|++. +.. + -+++|+|++||+++.+ ..||+|++|+
T Consensus 147 ~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~-i~~-l~~~g~til~vsHdl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 147 KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH-VLE-LKAKGITFLIIEHRLDIVLNYIDHLYVMF 224 (254)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH-HHH-HHHTTCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred CHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHH-HHH-HHHCCCEEEEEECCHHHHHHHCCEEEEEE
T ss_conf 5356991888899999999759272324397656999999999999-999-99789989999476999998699999996
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 976999329678874
Q 000553 808 KGQVKWIGSSADLAV 822 (1428)
Q Consensus 808 ~G~i~~~G~~~~l~~ 822 (1428)
+|+|+..|+++|+.+
T Consensus 225 ~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTEEEEEEESHHHHH
T ss_pred CCEEEEEECHHHHHH
T ss_conf 998999966899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.3e-34 Score=279.31 Aligned_cols=202 Identities=20% Similarity=0.263 Sum_probs=167.3
Q ss_pred CEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------
Q ss_conf 549997117860578853335540100147419979999968998378999998737567870899809-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g----------- 672 (1428)
.+|.++|.+.++.. .+. |+|+||++++|++++|+||+|||||||+++|.|.+++.+|+|.+.|
T Consensus 1 gaI~v~nl~k~yg~---~~v---l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 74 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74 (238)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHH
T ss_pred CCEEEEEEEEEECC---EEE---ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHH
T ss_conf 97899958999999---999---806256884897999999999999999999966988788879998672446839887
Q ss_pred -CEEEECCCCCCCC-CCHHHHHHCCCC---CCHH----HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -1999838987884-018999704999---9968----899999982312888404599753026897766508999999
Q 000553 673 -SIAYVPQVPWILS-GTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1428)
Q Consensus 673 -~iayv~Q~pWl~n-~TIreNIlfg~~---~d~~----~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIa 743 (1428)
.++||||++.++. -|++||+.|... .+.. ..+++++.+.|.+.. ..+-.+||||||||++
T Consensus 75 ~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lSgG~~qrv~ 143 (238)
T d1vpla_ 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLL 143 (238)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHH
T ss_pred HHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HHHHHHCCHHHHHHHH
T ss_conf 21867500154687866778889899861799899999999999867978888-----------5045337998989999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998813999888717842010999999999842185668964999826831020-089899993976999329678874
Q 000553 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1428)
Q Consensus 744 LARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~-~aD~Iivl~~G~i~~~G~~~~l~~ 822 (1428)
||||+.++|++++||||+++||+...+.|++- +..-.-.++|+|++||+++.+. .||+|++|++|+|.+.|+++++..
T Consensus 144 iA~al~~~p~illLDEPt~gLD~~~~~~i~~~-i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 144 IARALMVNPRLAILDEPTSGLDVLNAREVRKI-LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998659998873379889798999999999-99999659989999598999999699999998999999928999986
Q ss_pred C
Q ss_conf 0
Q 000553 823 S 823 (1428)
Q Consensus 823 ~ 823 (1428)
.
T Consensus 223 ~ 223 (238)
T d1vpla_ 223 R 223 (238)
T ss_dssp H
T ss_pred C
T ss_conf 5
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.7e-34 Score=280.58 Aligned_cols=182 Identities=27% Similarity=0.376 Sum_probs=153.5
Q ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------CEEEECCCCCCCC-CCHHHHHHC
Q ss_conf 0100147419979999968998378999998737567870899809-----------1999838987884-018999704
Q 000553 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIAYVPQVPWILS-GTIRDNILF 694 (1428)
Q Consensus 627 L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g-----------~iayv~Q~pWl~n-~TIreNIlf 694 (1428)
+ |+||++. +++++++||+|||||||++.|.|..++++|+|.++| +|+||+|+|-++. -||+|||.|
T Consensus 16 ~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 16 L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred E-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9-9999749-9799999799980999999997399989628999999988699899285225231443522015576665
Q ss_pred CCC-CCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH
Q ss_conf 999-996----889999998231288840459975302689776650899999999988139998887178420109999
Q 000553 695 GKN-YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 769 (1428)
Q Consensus 695 g~~-~d~----~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaLD~~t~ 769 (1428)
+.. ++. ++-+++++.+.|.+.. ......|||||||||+||||+..+|++++||||+|+||+++.
T Consensus 94 ~l~~~~~~~~~~~v~~~l~~~gl~~~~-----------~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~ 162 (240)
T d2onka1 94 GLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHH
T ss_conf 323367788999999999863837566-----------579444899998999998777516770675286555887999
Q ss_pred HHHHHHHHCCCCCC--CCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 99999842185668--964999826831020-0898999939769993296788740
Q 000553 770 RWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1428)
Q Consensus 770 ~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~-~aD~Iivl~~G~i~~~G~~~~l~~~ 823 (1428)
+.+++. +.. +.+ +.|+|++||+++.+. .||+|++|++|++++.|+++|+...
T Consensus 163 ~~i~~~-i~~-l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 163 GVLMEE-LRF-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHHH-HHH-HHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 999999-999-9874397699981899999996999999989999999069998329
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.9e-34 Score=277.94 Aligned_cols=190 Identities=23% Similarity=0.355 Sum_probs=157.9
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 19999999997799995202225997579599998799994899999983479899846999996179999376723508
Q 000553 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1270 (1428)
Q Consensus 1191 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~ 1270 (1428)
.|+++|++++|+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++. ..|.+++
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred EEEEEEEEEEEC---CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCEE
T ss_conf 599998999939---92884208898599899999999971999999996620567788999989626-----7367089
Q ss_pred EEECCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98077655677-57883286----9-999937899999980299999968993153059999992499999999987269
Q 000553 1271 VVPQSPFLFEG-SLRDNLDP----F-HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1344 (1428)
Q Consensus 1271 ~IpQdp~lf~g-TIR~NLdp----~-~~~sd~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~~ 1344 (1428)
++||++.++.. |+++|+.. + ...+++++.++++..++. +++..++ .||+|||||+++|||++++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~----~LSgG~~qrv~ia~al~~~ 143 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL------DLKKKLG----ELSQGTIRRVQLASTLLVN 143 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC------CTTSBGG----GSCHHHHHHHHHHHHTTSC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC------CCCCCCC----CCCCCHHHHHHHHHHHHCC
T ss_conf 99501357888289999999997548863799999999874885------6301268----6897188889999988649
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEEC
Q ss_conf 9789984656698999799999999983699479986158036640097999949
Q 000553 1345 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH 1399 (1428)
Q Consensus 1345 ~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~ 1399 (1428)
|++++|||||++||.++...+.+.|++..++.++++|+|+- .+.-||++.+|.+
T Consensus 144 ~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 144 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 98999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.3e-30 Score=252.84 Aligned_cols=196 Identities=20% Similarity=0.319 Sum_probs=160.1
Q ss_pred CEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------
Q ss_conf 549997117860578853335540100147419979999968998378999998737567870899809-----------
Q 000553 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1428)
Q Consensus 604 ~~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g----------- 672 (1428)
..++++|.+.+ +.|++|||+|++|++++|+||+|||||||+++|.|.. +.+|+|.++|
T Consensus 2 ~il~~~dv~~~----------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~ 70 (231)
T d1l7vc_ 2 IVMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKL 70 (231)
T ss_dssp EEEEEEEECCT----------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHH
T ss_pred EEEEEECCCCC----------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHH
T ss_conf 59999874157----------1555888899489899999899980999999994887-995599999999986998999
Q ss_pred --CEEEECCCCCC-CCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf --19998389878-84018999704999--99688999999823128884045997530268977665089999999998
Q 000553 673 --SIAYVPQVPWI-LSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1428)
Q Consensus 673 --~iayv~Q~pWl-~n~TIreNIlfg~~--~d~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARA 747 (1428)
..+|.+|+.-. +..++.+|+.++.. ...++.+++++.+.|++. .+.+..+||||||||++||||
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~a 139 (231)
T d1l7vc_ 71 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAV 139 (231)
T ss_dssp HHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHH
T ss_conf 864024512135774420988764100146689999999986598767-----------676844569988999999999
Q ss_pred HCC-------CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH-HHCCCEEEEEECCEEEEECCHHH
Q ss_conf 813-------9998887178420109999999998421856689649998268310-20089899993976999329678
Q 000553 748 VYH-------GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSAD 819 (1428)
Q Consensus 748 lY~-------~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~-l~~aD~Iivl~~G~i~~~G~~~~ 819 (1428)
+.+ +|++++||||+++||+...+.+++- +..-.-+++|+|++||+++. ...||+|++|++|++++.|+.+|
T Consensus 140 l~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~-i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~e 218 (231)
T d1l7vc_ 140 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI-LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 218 (231)
T ss_dssp HHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHH-HHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHH
T ss_pred HHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 98517133899889997187777898999999999-99998679999999677999999799999997998999889999
Q ss_pred HHH
Q ss_conf 874
Q 000553 820 LAV 822 (1428)
Q Consensus 820 l~~ 822 (1428)
+..
T Consensus 219 v~~ 221 (231)
T d1l7vc_ 219 VLT 221 (231)
T ss_dssp HSC
T ss_pred HHC
T ss_conf 818
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=2.6e-29 Score=242.54 Aligned_cols=182 Identities=23% Similarity=0.376 Sum_probs=145.8
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC--------CEEE
Q ss_conf 49997117860578853335540100147419979999968998378999998737567870899809--------1999
Q 000553 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAY 676 (1428)
Q Consensus 605 ~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g--------~iay 676 (1428)
.++++|.+++|+ .+. |+|+||++++|++++|+||+|||||||++.|.|.++|.+|+|.++| +++|
T Consensus 2 ~lev~~ls~~y~----~~v---l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~ 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74 (200)
T ss_dssp EEEEEEEEEESS----SEE---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred EEEEEEEEEEEC----CEE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEE
T ss_conf 599998999939----928---8420889859989999999997199999999662056778899998962673670899
Q ss_pred ECCCCCCCCC-CHHHHHHC-----CCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8389878840-18999704-----99999688999999823128884045997530268977665089999999998813
Q 000553 677 VPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1428)
Q Consensus 677 v~Q~pWl~n~-TIreNIlf-----g~~~d~~~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~ 750 (1428)
+||++.++.. |++||+.+ +...+++...+.++...+. |+ .++-.+||||||||++||||+..
T Consensus 75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----------~~~~~~LSgG~~qrv~ia~al~~ 142 (200)
T d1sgwa_ 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-----------KKKLGELSQGTIRRVQLASTLLV 142 (200)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-----------TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC-CC-----------CCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9501357888289999999997548863799999999874885-63-----------01268689718888999998864
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEEEC
Q ss_conf 9998887178420109999999998421856689649998268310200898999939
Q 000553 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1428)
Q Consensus 751 ~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Iivl~~ 808 (1428)
+|++++||||+++||+.+.+.+++. +.. +.+++++++++|+ +-+..||.+.+|.+
T Consensus 143 ~~~llllDEPt~gLD~~~~~~i~~~-l~~-~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 NAEIYVLDDPVVAIDEDSKHKVLKS-ILE-ILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHH-HHH-HHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 9989998686201699999999999-999-9867999999991-62544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=4.4e-20 Score=170.19 Aligned_cols=307 Identities=10% Similarity=0.049 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999759799999999999999999999999999984258873469999999999999999999999999999999999
Q 000553 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1428)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~l~~~l~l~~~~~~~~~~~~~~~~~r~~~~~r 351 (1428)
...+.|++.++...++.++..++....|++++.+++..-.+.+...-+.+++.++.+.++..++.....+...+.+.++.
T Consensus 9 ~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (319)
T d3b60a2 9 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 88 (319)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999999999987446877899999999999999764533546654434310001
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999982599432478985599999996599999999999-9998799999999999998867999999999999
Q 000553 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSF-HDAWSLPFQIGVALYLLYTQVKFAFVSGLAITIL 430 (1428)
Q Consensus 352 ~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nLms~D~~~i~~~~~~~-~~lw~~pl~i~i~~~lL~~~lG~a~l~g~~v~i~ 430 (1428)
..+...+|+|.++.+....++.+.|++++.++.|++.+.+..... .......+.++.+++.++..-...++..++++++
T Consensus 89 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~ 168 (319)
T d3b60a2 89 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 168 (319)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 10004777765010111102333221111121212100001111120011233445668888876520021025668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999996699999808089999999999999999999999999999999999
Q 000553 431 LIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWAT 510 (1428)
Q Consensus 431 ~~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~se~L~~Ik~IK~~gwE~~~~~~I~~~R~~El~~~~~~~~l~~~~~~~~~~ 510 (1428)
...+..+..++..+..++..+..++..+...|.++|++.||.+++|+.+.++.++..++..+...+..............
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (319)
T d3b60a2 169 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 248 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988766668778789887644567788777624872353111010245666665313567788888777740640100
Q ss_pred HHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9899999--9999998819987685899999999999999999999999999999999999996199988
Q 000553 511 TPTLFSL--FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEY 578 (1428)
Q Consensus 511 ~p~~~~~--~tf~~y~~~~~~L~~~~~Ft~lal~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e~ 578 (1428)
...+..+ ..++.|...++.++++..++.+.+...+..|+..++..++.+.++.+|.+||.++|+.|+.
T Consensus 249 ~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 249 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 0000237999999999980997899999999999999999999999999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=5.6e-20 Score=169.37 Aligned_cols=306 Identities=13% Similarity=0.121 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999975979999999999999999999999999998425887--34---6--999999999999999999999999999
Q 000553 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG--HL---D--GYVLAIALGLTSILKSFFDTQYSFHLS 344 (1428)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~--~~---~--g~~l~~~l~l~~~~~~~~~~~~~~~~~ 344 (1428)
...+.|++.++...++.++..++....|++++.+++.+.+... .. . ...++.++++..++..++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998626774215568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999825994324789855999999965999999999-99999879999999999999886799999
Q 000553 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVS 423 (1428)
Q Consensus 345 r~~~~~r~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nLms~D~~~i~~~~~-~~~~lw~~pl~i~i~~~lL~~~lG~a~l~ 423 (1428)
+.+.+++..+...+|+|.++++....++.++|+++|.++.|++.+.+... .+...+...+.+++++..+...-...++.
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985567788887665402332100012221100011113321001113454201114665334654400001468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999669999980808999999999999999999999999999
Q 000553 424 GLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503 (1428)
Q Consensus 424 g~~v~i~~~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~se~L~~Ik~IK~~gwE~~~~~~I~~~R~~El~~~~~~~~l~~~ 503 (1428)
.++++++...+...+.++..+..++..+..++..+.+.|.++|+|.||.+++|+.+.++..+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999899999--999999881998768589999999999999999999999999999999999999619998
Q 000553 504 CVFFWATTPTLFSL--FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSE 577 (1428)
Q Consensus 504 ~~~~~~~~p~~~~~--~tf~~y~~~~~~L~~~~~Ft~lal~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e 577 (1428)
..........+..+ ..++.+...++.++++..++.+.++..+..|+..+...++.+.++.+|++||.++|+.|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.90 E-value=4.5e-19 Score=162.24 Aligned_cols=289 Identities=15% Similarity=0.172 Sum_probs=217.5
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78899988---524589999999999999999842344444321134887877650156889999989999999999999
Q 000553 886 LTVYKNYA---KFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFS 962 (1428)
Q Consensus 886 ~~~y~~y~---~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~v~~~l~~~~~~~~~~~~~~ 962 (1428)
|+++++.+ +...+.. .+.+++.++..+.....++.++..+|.............+..++.++.++..++.+++.+.
T Consensus 1 Wk~~krl~~~~~~~k~~l-~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKAGL-IVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp CHHHHHHHHHHGGGHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 968999999999999999-9999999999999999999999999987446877899999999999999764533546654
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998511078733324677236999983381344200469999999999999887644887879999
Q 000553 963 FAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL 1042 (1428)
Q Consensus 963 ~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~ 1042 (1428)
..+.+.+...++++++++++++.|++||++.++|++++|+++|++.+...+...+...+..++..++.++.+.+..|.++
T Consensus 80 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 159 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 159 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 43431000110004777765010111102333221111121212100001111120011233445668888876520021
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998620624778998620339998518199999999999999999999999999
Q 000553 1043 LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122 (1428)
Q Consensus 1043 ~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 1122 (1428)
++++...+++..+..++.+..+...+...+..+...++..|.++|+.+||+|++|+.+.+++.+..+...+.........
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (319)
T d3b60a2 160 IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 239 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02566899999988766668778789887644567788777624872353111010245666665313567788888777
Q ss_pred HHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999---------------------------999999999999999999999999999977999998630487100
Q 000553 1123 LWLSLRLQ---------------------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1175 (1428)
Q Consensus 1123 ~wl~~~l~---------------------------~glal~~~~~~~~~l~~li~~~~~~e~~~~sveRi~~~~~~~~E~ 1175 (1428)
.+...... +...+.+...+..++..+...+.++.++.+|.+|+.+++|.|+|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 240 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 74064010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.85 E-value=2.2e-18 Score=156.87 Aligned_cols=286 Identities=16% Similarity=0.247 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 89998852458999999999999999984234444432113488787765--01568-----899999899999999999
Q 000553 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYS--TSFYL-----VVLCIFCMFNSFLTLVRA 960 (1428)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~--~~~~l-----~v~~~l~~~~~~~~~~~~ 960 (1428)
.+..|++...+.....+ ++.++..+.....++.++..+|.......... ...++ ..+.++.+...++.+++.
T Consensus 4 rl~~~~k~~k~~~~~~~-~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (323)
T d2hyda2 4 RYLQFVKPYKYRIFATI-IVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (323)
T ss_dssp HHHHHHGGGHHHHHHHH-HHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999-99999999999999999999999862677421556899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999985110787333246772369999833813442004699999999999998876448878799
Q 000553 961 FSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVF 1040 (1428)
Q Consensus 961 ~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~ 1040 (1428)
+...+.+.+...+++.++++++++.|++||++.++|++++|+++|++.+.+.....+...+..++.++..++.+.+.+|.
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 162 (323)
T d2hyda2 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK 162 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998556778888766540233210001222110001111332100111345420111466533465440000146
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999986206247789986203399985181999999999999999999999999
Q 000553 1041 FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1120 (1428)
Q Consensus 1041 ~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~~~~~~~~~~d~~~~~~~~~~~ 1120 (1428)
++++.++..+++..+...+.+..++..+...+..+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+.......
T Consensus 163 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~ 242 (323)
T d2hyda2 163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242 (323)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHH
T ss_conf 88899998877777776412333202677898999999787887559702346764111002330223111101567765
Q ss_pred HHHHHHHHHH------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999------------------------99---99999999999999999999999999779999986304871
Q 000553 1121 ASLWLSLRLQ------------------------VG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQ 1173 (1428)
Q Consensus 1121 ~~~wl~~~l~------------------------~g---lal~~~~~~~~~l~~li~~~~~~e~~~~sveRi~~~~~~~~ 1173 (1428)
...+...... +| ..+.+...+..++..+...+.++.....|.+|+.+++|.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 20000111110120558999999999998499889999999999999999999999999999999999999999977999
Q ss_pred C
Q ss_conf 0
Q 000553 1174 E 1174 (1428)
Q Consensus 1174 E 1174 (1428)
|
T Consensus 323 e 323 (323)
T d2hyda2 323 D 323 (323)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.50 E-value=1.9e-15 Score=133.90 Aligned_cols=172 Identities=11% Similarity=0.036 Sum_probs=120.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99998799994899999983479899846999996179999376723508980776556775788328699999378999
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1300 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ei~~ 1300 (1428)
||+|+|++|||||||++.+.+++++..|.+.++|.+....+.+.........++.+.++..+...+....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999802999999689931530599999924999999999872699789984656698--999799999999983699479
Q 000553 1301 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV--DAQTASILQNAISSECKGMTV 1378 (1428)
Q Consensus 1301 aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTs~l--D~~Te~~I~~~i~~~f~~~Tv 1378 (1428)
+.+...- .+++|++|+.++++++.++|+++++||++... +.+....+.+.+++ .++|+
T Consensus 74 --------------~~~~~~~----~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~~i 133 (178)
T d1ye8a1 74 --------------GVNVQYF----EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNV 133 (178)
T ss_dssp --------------EECHHHH----HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEE
T ss_pred --------------HCCCCHH----HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CCCEE
T ss_conf --------------0376256----653201378999999740997423027773100457999999987505--79789
Q ss_pred EEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHH
Q ss_conf 98615803664009799994985978669458850399389999985
Q 000553 1379 ITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1425 (1428)
Q Consensus 1379 I~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~~ 1425 (1428)
|.++|+.+....+|++..+++|++++.++. |.+..+.+.++.
T Consensus 134 l~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~~ 175 (178)
T d1ye8a1 134 VATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILSL 175 (178)
T ss_dssp EEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHHH
T ss_pred EEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHHH
T ss_conf 999744778986365998719999998996-----478899999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.17 E-value=3.5e-12 Score=108.29 Aligned_cols=146 Identities=9% Similarity=0.017 Sum_probs=97.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC--CEEEECCC-----------CCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 9999968998378999998737567870899809--19998389-----------8788401899970499999688999
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQV-----------PWILSGTIRDNILFGKNYDPQSYSE 705 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g--~iayv~Q~-----------pWl~n~TIreNIlfg~~~d~~~Y~~ 705 (1428)
-++|+||+|||||||++.|+|++++..|.+.+.+ ...+..|. +.+.+.+...+..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHHHHHCCCCCC
Q ss_conf 99982312888404599753026897766508999999999881399988871784201--0999999999842185668
Q 000553 706 TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV--DAQVARWILSNAIMGPHML 783 (1428)
Q Consensus 706 vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaL--D~~t~~~I~~~~i~g~ll~ 783 (1428)
..+...-..+++|+++|.+++++...+++++++|||-... +......+.+. +. -.
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~-l~---~~ 129 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI-MH---DP 129 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH-HT---CT
T ss_pred -------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH-HC---CC
T ss_conf -------------------30376256653201378999999740997423027773100457999999987-50---57
Q ss_pred CCEEEEECCCCCHHHCCCEEEEEECCEEEEECC
Q ss_conf 964999826831020089899993976999329
Q 000553 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1428)
Q Consensus 784 ~kTvIlvTh~~~~l~~aD~Iivl~~G~i~~~G~ 816 (1428)
++|+|+++|+....+.+|++..+++|++.+.+.
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 978999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=3.1e-10 Score=92.93 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHCCEEEEE
Q ss_conf 9992499999999987----26997899846566989997999999999836-994799861580366400979999
Q 000553 1326 SFSVGQRQLICLARAL----LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL 1397 (1428)
Q Consensus 1326 ~LS~GQrQll~LARAl----L~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f-~~~TvI~IaHRl~ti~~~DrI~vl 1397 (1428)
.+|||||.+++||-.+ ..++++++||||++++|.++...+.+.|++.. .++-+|+|||+..+...+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=7.5e-08 Score=74.29 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEE--EEC
Q ss_conf 9992499999999987----2699789984656698999799999999983699479986158036640097999--949
Q 000553 1326 SFSVGQRQLICLARAL----LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILI--LDH 1399 (1428)
Q Consensus 1326 ~LS~GQrQll~LARAl----L~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~v--l~~ 1399 (1428)
.+|.|||++..++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||+...+..+|+++. |++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred CE
Q ss_conf 85
Q 000553 1400 GH 1401 (1428)
Q Consensus 1400 G~ 1401 (1428)
|.
T Consensus 299 g~ 300 (308)
T d1e69a_ 299 GV 300 (308)
T ss_dssp SC
T ss_pred CE
T ss_conf 99
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=1.2e-06 Score=64.81 Aligned_cols=76 Identities=32% Similarity=0.338 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHHC----CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEE--
Q ss_conf 766508999999999881----39998887178420109999999998421856689649998268310200898999--
Q 000553 732 VNLSGGQRARLALARAVY----HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV-- 805 (1428)
Q Consensus 732 ~~LSGGQkqRIaLARAlY----~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Iiv-- 805 (1428)
..+|+|||+...++.... ..+.++++|||=++|++.-.+.+.+. +.. ..++.-+|++||++.++..+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~-l~~-~~~~~QviitTHsp~~~~~~d~~~~v~ 295 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRL-LKE-NSKHTQFIVITHNKIVMEAADLLHGVT 295 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHH-HHH-HTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCCEEEEE
T ss_conf 102577766777776655654226744554320335797899999999-998-554887999989889997324289999
Q ss_pred EECC
Q ss_conf 9397
Q 000553 806 MDKG 809 (1428)
Q Consensus 806 l~~G 809 (1428)
+++|
T Consensus 296 ~~~g 299 (308)
T d1e69a_ 296 MVNG 299 (308)
T ss_dssp ESSS
T ss_pred EECC
T ss_conf 9699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=3.1e-06 Score=61.66 Aligned_cols=73 Identities=27% Similarity=0.335 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHH--H--CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC-CCEEEEECCCCCHHHCCCEEEEE
Q ss_conf 7665089999999998--8--13999888717842010999999999842185668-96499982683102008989999
Q 000553 732 VNLSGGQRARLALARA--V--YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAISAADMVVVM 806 (1428)
Q Consensus 732 ~~LSGGQkqRIaLARA--l--Y~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~-~kTvIlvTh~~~~l~~aD~Iivl 806 (1428)
..||||||.+++||=. + +..+++++||||.++||+.....+.+. +.. +.. +.-+|++||+++.+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~-~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRR-HRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHH-HCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999-999-728998899995878999736617999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.92 E-value=0.00087 Score=42.41 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=28.5
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 41997999996899837899999873756787089980
Q 000553 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671 (1428)
Q Consensus 634 i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~ 671 (1428)
+..|.-+.|+|++||||||+++++++++++..=-+.+.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 98378889994035662578999865301456233113
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.61 E-value=0.0063 Score=35.69 Aligned_cols=153 Identities=10% Similarity=0.123 Sum_probs=75.0
Q ss_pred EEEEEEE--ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 0100147--41997999996899837899999873756787089980919998389878840189997049999968899
Q 000553 627 LNQVSLC--LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYS 704 (1428)
Q Consensus 627 L~~inl~--i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl~n~TIreNIlfg~~~d~~~Y~ 704 (1428)
|+++ +. +++|+++.|.|+.|||||+|+.-++-+.....+ .+.|++-+ ..+..+.
T Consensus 15 LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----------------~~~~~~~ 70 (242)
T d1tf7a2 15 LDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----------------ESRAQLL 70 (242)
T ss_dssp HHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----------------SCHHHHH
T ss_pred HHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----------------CCHHHHH
T ss_conf 9884-5689869849999918999999999999999987232------44112126-----------------7999999
Q ss_pred HHHHHHCCHHHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEEEECCCCCCC---CHHHHHHHHHHHHCC
Q ss_conf 99998231288840-45997530268977665089999999998813-99988871784201---099999999984218
Q 000553 705 ETLKACTLDVDISL-MVGGDMAYIGEKGVNLSGGQRARLALARAVYH-GSDIYMLDDVLSAV---DAQVARWILSNAIMG 779 (1428)
Q Consensus 705 ~vi~aC~L~~Di~~-lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~-~~~i~lLDD~lSaL---D~~t~~~I~~~~i~g 779 (1428)
+- ++.+..|... ...|....+........ .+...-.+.+++.+ ++++++.|...... +..-....... +..
T Consensus 71 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~-l~~ 146 (242)
T d1tf7a2 71 RN--AYSWGMDFEEMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG-VTG 146 (242)
T ss_dssp HH--HHTTSCCHHHHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHH-HHH
T ss_pred HH--HHHCCCCHHHHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHH-HHH
T ss_conf 99--9982998699854586179973000101-7999999999998408853322043143048999999999999-999
Q ss_pred CCCC--CCEEEEECCCCC-----------HHHCCCEEEEEEC
Q ss_conf 5668--964999826831-----------0200898999939
Q 000553 780 PHML--QKTRILCTHNVQ-----------AISAADMVVVMDK 808 (1428)
Q Consensus 780 ~ll~--~kTvIlvTh~~~-----------~l~~aD~Iivl~~ 808 (1428)
+++ +.|++++.|... .-..||-|+.++.
T Consensus 147 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 147 -YAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp -HHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred -HHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf -99986983999985675125544577640464216999998
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.55 E-value=0.0075 Score=35.08 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=69.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 199799999689983789999987375678708-9980919998389878840189997049999968899999982312
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS-IHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~-v~~~g~iayv~Q~pWl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~ 713 (1428)
.++.++.|+||+||||||.+.+++.+++....+ +.+...+-|. -|+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~--~~~------------------------------- 202 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD--IDG------------------------------- 202 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC--CSS-------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC--CCC-------------------------------
T ss_conf 41054898767877744779998666257874699962674345--678-------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 88840459975302689776650899999999988139998887178420109999999998421856689649998268
Q 000553 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793 (1428)
Q Consensus 714 ~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~ 793 (1428)
--++.+.+ ..|+.---+|..++=++|||++.+|+- |..|++..++.+..| +-|+-.-|.
T Consensus 203 --------~~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~tG-----hlV~tTlHa 261 (401)
T d1p9ra_ 203 --------IGQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQASLTG-----HLVMSTLHT 261 (401)
T ss_dssp --------SEEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHHTT-----CEEEEEECC
T ss_pred --------CCEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHHHCC-----CEEEEEECC
T ss_conf --------87026558-----767799999999984138889845768---759999999997249-----858998336
Q ss_pred CCH
Q ss_conf 310
Q 000553 794 VQA 796 (1428)
Q Consensus 794 ~~~ 796 (1428)
-+-
T Consensus 262 ~~a 264 (401)
T d1p9ra_ 262 NTA 264 (401)
T ss_dssp SSS
T ss_pred CCH
T ss_conf 766
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.50 E-value=0.0032 Score=37.97 Aligned_cols=132 Identities=19% Similarity=0.158 Sum_probs=68.5
Q ss_pred CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC--CCCCCCEEEEECCCEEEECCCCCCCC-CCHHHHHHCCCCCCHHH
Q ss_conf 4010014741997999996899837899999873--75678708998091999838987884-01899970499999688
Q 000553 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG--EMMLTHGSIHASGSIAYVPQVPWILS-GTIRDNILFGKNYDPQS 702 (1428)
Q Consensus 626 ~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLG--e~~~~~G~v~~~g~iayv~Q~pWl~n-~TIreNIlfg~~~d~~~ 702 (1428)
+=.|+.+ . +++++|+||+.|||||+|+++.= -|.. .|. .+...-+-++.--.|+. --..|++.-|.
T Consensus 27 VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq-~G~-~vpA~~~~i~~~d~I~~~~~~~d~~~~~~------ 95 (224)
T d1ewqa2 27 VPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQ-VGS-FVPAEEAHLPLFDGIYTRIGASDDLAGGK------ 95 (224)
T ss_dssp CCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHT-TTC-CBSSSEEEECCCSEEEEECCC------CC------
T ss_pred ECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHH-CCC-EEECCCEEEEECCEEEEEECCCCCCCCCC------
T ss_conf 4555884--7-86799978873453234556589999985-250-46137519940116999987776023783------
Q ss_pred HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999982312888404599753026897766508999999999881399988871784201099999999984218566
Q 000553 703 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782 (1428)
Q Consensus 703 Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll 782 (1428)
+.=...-+|++-.----.+..++|+||.+++=|+.-+..+... ++..+.
T Consensus 96 ------------------------------StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~a-ile~L~ 144 (224)
T d1ewqa2 96 ------------------------------STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATA-VAEALH 144 (224)
T ss_dssp ------------------------------SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHH-HHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHH-HHHHHH
T ss_conf ------------------------------0789867889877502897727855454568623320025888-888886
Q ss_pred C-CCEEEEECCCCCHHHC
Q ss_conf 8-9649998268310200
Q 000553 783 L-QKTRILCTHNVQAISA 799 (1428)
Q Consensus 783 ~-~kTvIlvTh~~~~l~~ 799 (1428)
+ +.+++++||..+....
T Consensus 145 ~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 145 ERRAYTLFATHYFELTAL 162 (224)
T ss_dssp HHTCEEEEECCCHHHHTC
T ss_pred HCCCCEEEEEECHHHHHH
T ss_conf 237613786520233322
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.46 E-value=0.0091 Score=34.41 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=33.9
Q ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCC
Q ss_conf 010014741997999996899837899999873756787089980919998389
Q 000553 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1428)
Q Consensus 627 L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~ 680 (1428)
|.++.--+.+|++++|.|++|+|||+|+.-+.-.+....|. ++.|.+=+
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-----~v~~~s~E 73 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-----KVGLAMLE 73 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC-----CEEEEESS
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-----CEEEEEEC
T ss_conf 88874697898089999479997999999999726553366-----34576401
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.035 Score=29.88 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=64.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC----CCCCEEEEECCCEEEECCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHHH
Q ss_conf 199799999689983789999987375----67870899809199983898788401899970-4999996889999998
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEM----MLTHGSIHASGSIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKA 709 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~----~~~~G~v~~~g~iayv~Q~pWl~n~TIreNIl-fg~~~d~~~Y~~vi~a 709 (1428)
.+|+++.|.|+.|+|||+|+..+.-.+ +...+...-.+++.|++-+-- ...+++.+. .+..++...+......
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~~~ 104 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVADG 104 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 5895899992899989999999999997699721112357873689851234--99999999998623686665312333
Q ss_pred HCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC------CHHHHHHHHHHHHCCCCCC
Q ss_conf 2312888404599753026897766508999999999881399988871784201------0999999999842185668
Q 000553 710 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV------DAQVARWILSNAIMGPHML 783 (1428)
Q Consensus 710 C~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaL------D~~t~~~I~~~~i~g~ll~ 783 (1428)
+...+. .+...... -....-.+.++ ..+++++++|-. +++ |....+.++.. +.. +.+
T Consensus 105 ------~~~~~~-----~~~~~~~~--~~~~~~~~~~~-~~~~~lvviD~l-~~~~~~~~~~~~~~~~~~~~-l~~-la~ 167 (274)
T d1nlfa_ 105 ------LLIQPL-----IGSLPNIM--APEWFDGLKRA-AEGRRLMVLDTL-RRFHIEEENASGPMAQVIGR-MEA-IAA 167 (274)
T ss_dssp ------EEECCC-----TTSCCCTT--SHHHHHHHHHH-HTTCSEEEEECG-GGGCCSCTTCHHHHHHHHHH-HHH-HHH
T ss_pred ------CEECCC-----CCCCCHHH--HHHHHHHHHHH-CCCCCEEECCCH-HHHCCCCCCCHHHHHHHHHH-HHH-HHH
T ss_conf ------232145-----67420357--89999998875-267658962813-54226652322568999988-777-764
Q ss_pred --CCEEEEECCC
Q ss_conf --9649998268
Q 000553 784 --QKTRILCTHN 793 (1428)
Q Consensus 784 --~kTvIlvTh~ 793 (1428)
+.|++++.|.
T Consensus 168 ~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 168 DTGCSIVFLHHA 179 (274)
T ss_dssp HHCCEEEEEEEC
T ss_pred CCCCCEEHHHHC
T ss_conf 479754013100
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.026 Score=30.85 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 75795999987999948999999834
Q 000553 1216 IEGGTQVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1216 I~~GekvgIvGrTGSGKSTLl~~L~r 1241 (1428)
+.||+.+-|+|++|+||||++..|.-
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 55895899992899989999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.06 E-value=0.03 Score=30.36 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=9.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996899837899999873
Q 000553 639 LVAVIGEVGSGKSSLLNSILG 659 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLG 659 (1428)
+++++|++||||||+.+.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.039 Score=29.49 Aligned_cols=121 Identities=20% Similarity=0.189 Sum_probs=59.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf 97999996899837899999873756787089980919998389878840189997049999968899999982312888
Q 000553 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDI 716 (1428)
Q Consensus 637 G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~~Di 716 (1428)
|=-++++|++|+|||||+++++|+-... ++..| +|.++.+.....+.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~------------~~~~~----~~~~~~~~~~~~~~----------------- 47 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIA----GTTRDVLREHIHID----------------- 47 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSST----TCCCSCEEEEEEET-----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEE------------EECCC----CCCCCEEEEEEECC-----------------
T ss_conf 9899998999998999999996888667------------51246----64220476532026-----------------
Q ss_pred HCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC----CCHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 404599753026897--76650899999999988139998887178420----109999999998421856689649998
Q 000553 717 SLMVGGDMAYIGEKG--VNLSGGQRARLALARAVYHGSDIYMLDDVLSA----VDAQVARWILSNAIMGPHMLQKTRILC 790 (1428)
Q Consensus 717 ~~lp~GD~T~iGe~G--~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSa----LD~~t~~~I~~~~i~g~ll~~kTvIlv 790 (1428)
+.....+...| ..-.+.++..+..+...|.++++++++-..+. -+.+....+... ...++.+|+|
T Consensus 48 ----~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~iilv 118 (161)
T d2gj8a1 48 ----GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR-----LPAKLPITVV 118 (161)
T ss_dssp ----TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH-----SCTTCCEEEE
T ss_pred ----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH-----CCCCCCEEEC
T ss_conf ----8235413653212246520247899999998741332011025654203455544455542-----0141010204
Q ss_pred CCCCCHHHC
Q ss_conf 268310200
Q 000553 791 THNVQAISA 799 (1428)
Q Consensus 791 Th~~~~l~~ 799 (1428)
-+..+..+.
T Consensus 119 ~NK~Dl~~~ 127 (161)
T d2gj8a1 119 RNKADITGE 127 (161)
T ss_dssp EECHHHHCC
T ss_pred CCHHHHHHH
T ss_conf 654443355
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.012 Score=33.47 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=65.0
Q ss_pred CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC--CCCCCCEEEEECCCEEEECCCCCCC-CCCHHHHHHCC-CCCCHH
Q ss_conf 4010014741997999996899837899999873--7567870899809199983898788-40189997049-999968
Q 000553 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG--EMMLTHGSIHASGSIAYVPQVPWIL-SGTIRDNILFG-KNYDPQ 701 (1428)
Q Consensus 626 ~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLG--e~~~~~G~v~~~g~iayv~Q~pWl~-n~TIreNIlfg-~~~d~~ 701 (1428)
+=.|+++. +.+....|+||+.|||||+|+++-= -|....+-| ...-+-.+---.|+ .-...|++--| +.|
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~V--pA~~a~~~~~d~I~~~~~~~d~~~~~~S~F--- 104 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV--PAQKVEIGPIDRIFTRVGAADDLASGRSTF--- 104 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB--SSSEEEECCCCEEEEEEC-----------C---
T ss_pred CCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEE--ECCCEECCCCHHHEEEECCCCCCCCCHHHH---
T ss_conf 64057988-995399995467313689999879999998729767--417666134420234874675343653189---
Q ss_pred HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 89999998231288840459975302689776650899999999988139998887178420109999999998421856
Q 000553 702 SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781 (1428)
Q Consensus 702 ~Y~~vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~l 781 (1428)
...-+|++-.----.+..++|+||++++=++.-+..+....+.. +
T Consensus 105 ----------------------------------~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~-l 149 (234)
T d1wb9a2 105 ----------------------------------MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAEN-L 149 (234)
T ss_dssp ----------------------------------HHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHH-H
T ss_pred ----------------------------------HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH-H
T ss_conf ----------------------------------99999999999745466088532223587745666789876454-3
Q ss_pred C-CCC-EEEEECCCCCH
Q ss_conf 6-896-49998268310
Q 000553 782 M-LQK-TRILCTHNVQA 796 (1428)
Q Consensus 782 l-~~k-TvIlvTh~~~~ 796 (1428)
. +.. .++++||..+.
T Consensus 150 ~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 150 ANKIKALTLFATHYFEL 166 (234)
T ss_dssp HHTTCCEEEEECSCGGG
T ss_pred HCCCCCEEEEECCHHHH
T ss_conf 20454428985246877
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.96 E-value=0.0032 Score=37.94 Aligned_cols=34 Identities=38% Similarity=0.529 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9979999968998378999998737567870899
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~ 669 (1428)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.90 E-value=0.03 Score=30.37 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=26.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 579599998799994899999983479899846
Q 000553 1217 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249 (1428)
Q Consensus 1217 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1249 (1428)
.++--+-|+|||||||||.+.++++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.67 E-value=0.0057 Score=36.03 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++|+|.+|+|||||+++++|+-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.47 E-value=0.0075 Score=35.11 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 7959999879999489999998347989984699
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ 1251 (1428)
+|....++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.42 E-value=0.0054 Score=36.19 Aligned_cols=28 Identities=50% Similarity=0.617 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 9999968998378999998737567870
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G 666 (1428)
-++|+|++|+|||||+++|+|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.32 E-value=0.051 Score=28.56 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++|+|++|+|||||..+||...
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999488980999999999970
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.14 E-value=0.078 Score=27.11 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=63.4
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 41997999996899837899999873756787089980919998389878840189997049999968899999982312
Q 000553 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713 (1428)
Q Consensus 634 i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~ 713 (1428)
+++..-+.+.||.|+|||+|.+++.+++.. .+-+++ +
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~------------------------------~---- 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK------------------------------G---- 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC------------------------------H----
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE------------------------------H----
T ss_conf 998875788789987630477887877189---------479988------------------------------7----
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH---------HHHHHHHHH---HHCCCC
Q ss_conf 88840459975302689776650899999999988139998887178420109---------999999998---421856
Q 000553 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA---------QVARWILSN---AIMGPH 781 (1428)
Q Consensus 714 ~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaLD~---------~t~~~I~~~---~i~g~l 781 (1428)
.|+.. +..| ...++-|-.+.+|--..|-|+++||.=+.... ...+.+... .+.+ .
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~ 141 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG-M 141 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-C
T ss_conf 99525------3165------158999999999986398435687546324557876788737999999999999628-6
Q ss_pred CC-C-CEEEEECCCCCHHHC
Q ss_conf 68-9-649998268310200
Q 000553 782 ML-Q-KTRILCTHNVQAISA 799 (1428)
Q Consensus 782 l~-~-kTvIlvTh~~~~l~~ 799 (1428)
.. + .-+|.+||+++.++.
T Consensus 142 ~~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 142 STKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp ----CCEEEECCBSCTTTSC
T ss_pred CCCCCEEEEEECCCCHHCCH
T ss_conf 77799899991799222799
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.11 E-value=0.0026 Score=38.67 Aligned_cols=33 Identities=39% Similarity=0.517 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 997999996899837899999873756787089
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v 668 (1428)
+|+.++++|++|.|||||+++|+|+.....|.|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.09 E-value=0.0065 Score=35.56 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 97999996899837899999873756787
Q 000553 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1428)
Q Consensus 637 G~l~~IvG~vGsGKStLL~alLGe~~~~~ 665 (1428)
|.+++|+||+||||||+.+.+..+.+...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~ 30 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLH 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 74999989999999999999984589971
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.09 E-value=0.0077 Score=35.00 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=32.3
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 5997579599998799994899999983479899846999
Q 000553 1213 NFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1252 (1428)
Q Consensus 1213 sl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~I 1252 (1428)
...++.+..+-|+|+|||||||++++|++.+++..=-|.|
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9999837888999403566257899986530145623311
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.08 E-value=0.025 Score=30.95 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=20.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 19979999968998378999998737
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe 660 (1428)
++-++++++|+.||||||+.+.++.+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0079 Score=34.92 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCC
Q ss_conf 999996899837899999873756787089980919998389878840
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl~n~ 686 (1428)
+++|.|++||||||+.+.|-..+....+ +.++..++++-+....
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECCC
T ss_conf 9999689999876899999999730468----9965999521568984
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.00019 Score=47.58 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=71.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCC------CCCC
Q ss_conf 9999879999489999998347989984699999617999937672350898077655677578832869------9999
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF------HMND 1294 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~------~~~s 1294 (1428)
.|.|+|+.|+|||||+..+.+.+...++.+.+.+.+........+......+.|+...+.....++.... ....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899971999999999999977997999984550122211465412343302466543001034441432231100
Q ss_pred HHHHHHHHHHCCHH--HHHHHC---CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 37899999980299--999968---9931530599999924999999999872699789984656698999799999999
Q 000553 1295 DLKIWSVLEKCHVK--EEVEAV---GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369 (1428)
Q Consensus 1295 d~ei~~aL~~~~L~--~~i~~l---gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i 1369 (1428)
+.+. ++..... +.+... +.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.+
T Consensus 83 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 157 (189)
T d2i3ba1 83 DLTS---FEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEI 157 (189)
T ss_dssp CHHH---HHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHH
T ss_pred CHHH---HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHH
T ss_conf 3777---77788999999988762189706861433330535999999999854686599961555775569--999998
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 98369947998615
Q 000553 1370 SSECKGMTVITIAH 1383 (1428)
Q Consensus 1370 ~~~f~~~TvI~IaH 1383 (1428)
++ ..+.+++.++.
T Consensus 158 ~~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 158 RN-RKDVKVFNVTK 170 (189)
T ss_dssp HT-TCCSEEEECCS
T ss_pred HC-CCCCEEEEECH
T ss_conf 67-89974999786
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.98 E-value=0.007 Score=35.32 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.98 E-value=0.086 Score=26.78 Aligned_cols=88 Identities=19% Similarity=0.168 Sum_probs=49.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 57959999879999489999998347989984699999617999937672350898077655677578832869999937
Q 000553 1217 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1296 (1428)
Q Consensus 1217 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ 1296 (1428)
+.-+.|-+||..||||||+...++.- .|.+.|+ .+++++ -.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~--------~D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVN--------RDTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEE--------HHHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEEC--------HHHHHH---------------------------HH
T ss_conf 99989999899999899999999976----5978976--------077778---------------------------88
Q ss_pred HHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 89999998029999996899315305999999249999-99999872699789984
Q 000553 1297 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL-ICLARALLKSSKVLCLD 1351 (1428)
Q Consensus 1297 ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQl-l~LARAlL~~~~ILiLD 1351 (1428)
.+.+.++. .+. .|.+..++. .|.+..+|+. +.+||..=-+..++.+|
T Consensus 53 ~~~~~~~~-----~l~-~g~~vIiD~--t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA-----ALR-QGKRVVIDN--TNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH-----HHH-TTCCEEEES--CCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH-----HHH-CCCCCEEEC--CCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999-----997-799955517--6799999999999998558887999948
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.97 E-value=0.0078 Score=34.98 Aligned_cols=24 Identities=50% Similarity=0.753 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899837899999873756
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
-++++|++|+|||||+++|+|+-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.97 E-value=0.052 Score=28.48 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 5999987999948999999834798998469999
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1253 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1253 (1428)
+.|.|+|++||||||+++.|.+-. .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEEC
T ss_conf 799998999999999999999957---9979960
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.044 Score=29.05 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=35.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 19979999968998378999998737567870899809199983898788401899970499999688999
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE 705 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl~n~TIreNIlfg~~~d~~~Y~~ 705 (1428)
+.+.+.+++|+.||||||+.+.|...+.. ..++ ..++...........+.++.......
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~----~~~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~ 62 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHA----AFLD--------GDFLHPRRNIEKMASGEPLNDDDRKP 62 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC----EEEE--------GGGGCCHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC----CEEC--------HHHHHHHHHHHHHCCCCCEEHHHHHH
T ss_conf 98718999899998989999999998697----8310--------36645998853002476300113477
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.79 E-value=0.013 Score=33.19 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=25.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 74199799999689983789999987375
Q 000553 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-+|+|+++.|.|+.|||||+|..-++-..
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 95588799998589898899999999986
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.77 E-value=0.097 Score=26.39 Aligned_cols=173 Identities=15% Similarity=0.231 Sum_probs=79.0
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHCCE-EEEECCCCCCCCCHHH
Q ss_conf 2022259975795999987999948999999834-7989984699999617999937672350-8980776556775788
Q 000553 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR-LTPICGGQILVDGLNIINTPVRDLRGRF-AVVPQSPFLFEGSLRD 1285 (1428)
Q Consensus 1208 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~r-l~~~~~G~I~IDG~di~~i~~~~LR~~i-~~IpQdp~lf~gTIR~ 1285 (1428)
-|+++.-=+.|||.+-|.|++|+||||++.-+.. +..-..-.+.+- . -+.+.+.+..++ +...+-+.--
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~--s-~E~~~~~~~~r~~~~~~~~~~~~------ 94 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA--M-LEESVEETAEDLIGLHNRVRLRQ------ 94 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE--E-SSSCHHHHHHHHHHHHTTCCGGG------
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE--E-ECCCHHHHHHHHHHHHHCCCCHH------
T ss_conf 68887469789808999947999799999999972655336634576--4-01111357769999864587101------
Q ss_pred HCCCCCCCCHHHHHHHHHHCCHHHHHHHC-CCCHH-HHCCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCC-----C
Q ss_conf 32869999937899999980299999968-99315-30599999924999999999872--6997899846566-----9
Q 000553 1286 NLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF-VKESGISFSVGQRQLICLARALL--KSSKVLCLDECTA-----N 1356 (1428)
Q Consensus 1286 NLdp~~~~sd~ei~~aL~~~~L~~~i~~l-gLdt~-v~e~G~~LS~GQrQll~LARAlL--~~~~ILiLDEaTs-----~ 1356 (1428)
.+..-...++...+.+..+.. +-+.. .-+........ .++...+... .+++++++|=.+- +
T Consensus 95 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~ 164 (277)
T d1cr2a_ 95 --------SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASG 164 (277)
T ss_dssp --------CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC------
T ss_pred --------HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf --------012222214567788898874035214662143310689--9999865432136762599705421203465
Q ss_pred CCHHH--HHHHHHHHHHHC--CCCEEEEECCCH----------------HHH-------HHCCEEEEEEC
Q ss_conf 89997--999999999836--994799861580----------------366-------40097999949
Q 000553 1357 VDAQT--ASILQNAISSEC--KGMTVITIAHRI----------------STV-------LNMDEILILDH 1399 (1428)
Q Consensus 1357 lD~~T--e~~I~~~i~~~f--~~~TvI~IaHRl----------------~ti-------~~~DrI~vl~~ 1399 (1428)
-+..+ ...+.+.+++.. .+|+|++++|=- +.+ ..+|-|+.+..
T Consensus 165 ~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 4430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.012 Score=33.45 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999689983789999987375678
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLT 664 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~ 664 (1428)
.++|+|+.|||||||++.|+.++...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.021 Score=31.66 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99799999689983789999987375678
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLT 664 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~~~~ 664 (1428)
.|.+++|+||+|+||+||.+.++-+.+..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~ 29 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLY 29 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 98099999999999999999998639866
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.23 E-value=0.12 Score=25.51 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999968998378999998737567
Q 000553 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
..+.||.|+||||+.+++..++..
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~~ 59 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIFG 59 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 998899999889999999976227
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.21 E-value=0.012 Score=33.35 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
+|+|+|++|+|||||+++|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.10 E-value=0.0086 Score=34.62 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998799994899999983479899
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPIC 1246 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~ 1246 (1428)
.++|+|.+|||||||++.|.+-+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.09 E-value=0.011 Score=33.86 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999689983789999987375
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.|++++++|+.||||||+.+++..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.01 E-value=0.015 Score=32.70 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899837899999873756
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
+++|.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.87 E-value=0.0081 Score=34.82 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 959999879999489999998347989
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRLTPI 1245 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl~~~ 1245 (1428)
|..+.|+||+|||||||.+.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.82 E-value=0.014 Score=32.92 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++|+|+.++|||||+++|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.77 E-value=0.019 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++++|+.|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.019 Score=31.91 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCC
Q ss_conf 999996899837899999873756787089980919998389878
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 683 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl 683 (1428)
+++|.|++||||||+.+.|.-.+...... ....++..++++-|-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~-~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC-CCCCCEEEEECCCCC
T ss_conf 99998999787999999999996410134-578843999346532
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.022 Score=31.37 Aligned_cols=24 Identities=58% Similarity=0.717 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 959999879999489999998347
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
|=||+++|++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.64 E-value=0.0083 Score=34.73 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=38.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCC
Q ss_conf 79599998799994899999983479899846999996179999376723508980776556
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1279 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf 1279 (1428)
+|....++|.||.|||||+++|.+-.....|.|.-. ..-+.+.-|.+--+-+...++.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~----~~rGrHTTt~~~l~~~~gg~ii 153 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH----LGRGKHTTRHVELIHTSGGLVA 153 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCC----CCCCCEEEEEEEEEECCCCEEE
T ss_conf 356499987787348789875151767640355533----5897124434788862797899
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.60 E-value=0.014 Score=33.08 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999689983789999987375678
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLT 664 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~ 664 (1428)
.++|+|+.|||||||+..|+.++...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99998099998999999999999867
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.59 E-value=0.027 Score=30.73 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899837899999873756
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
.++++|+.|+|||||+++|+|+-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.58 E-value=0.028 Score=30.59 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=27.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 7959999879999489999998347989984699999
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1254 (1428)
.|+.|.|+|++||||||+.+.|.+.+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.053 Score=28.41 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7419979999968998378999998737567
Q 000553 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
-+++|+++.|.|+.|||||+|+..++.....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9859979999958999999999999999988
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.56 E-value=0.027 Score=30.75 Aligned_cols=23 Identities=48% Similarity=0.807 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.++++|.+|+|||||+++++|+-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.54 E-value=0.16 Score=24.61 Aligned_cols=24 Identities=42% Similarity=0.724 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 959999879999489999998347
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
+=||||+|++|+|||||+++|++-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 888999999999999999999778
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.44 E-value=0.023 Score=31.25 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=26.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCE
Q ss_conf 999987999948999999834798998---46999996
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGL 1255 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~---G~I~IDG~ 1255 (1428)
.+||+|++|||||||+..|.+.+...+ |.|.-|+-
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99998099998999999999999867983799983167
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.44 E-value=0.04 Score=29.41 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.++|+|+.|||||||++.++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.40 E-value=0.017 Score=32.35 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|..++|||||+++|.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.35 E-value=0.17 Score=24.38 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998378999998737567
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
-+.+.||.|||||++.+++.+|+..
T Consensus 44 giLl~GppGtGKT~la~aia~~~~~ 68 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEARV 68 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 4887668988835999999987399
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.34 E-value=0.096 Score=26.40 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=35.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHH
Q ss_conf 99998799994899999983479899846999996179999376723508980776556775788
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1285 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~ 1285 (1428)
.|||+|.+||||||+.+.|..++.-..+. .++.+|++|.+..+...++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHHH
T ss_conf 99996899998768999999997304689-----------------9659995215689845888
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.03 Score=30.37 Aligned_cols=22 Identities=45% Similarity=0.890 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998378999998737
Q 000553 639 LVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe 660 (1428)
.++++|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.33 E-value=0.086 Score=26.79 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999689983789999987375
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
+-..++|+||.||||||+.+.|...+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.014 Score=32.95 Aligned_cols=25 Identities=48% Similarity=0.676 Sum_probs=17.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9599998799994899999983479
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
.-+|+|+|++++|||||+++|++.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.32 E-value=0.18 Score=24.35 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998378999998737567
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
-+.+.||.|||||++.+++..++..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~~ 66 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESNF 66 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 7998896999889999998620100
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.25 E-value=0.18 Score=24.27 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=25.9
Q ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 0100147419979999968998378999998737567
Q 000553 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 627 L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
++++....+ .-+.+.||.|||||++.+++..|+..
T Consensus 37 ~~~~g~~~~--~~iLL~GppGtGKT~la~~iA~~~~~ 71 (256)
T d1lv7a_ 37 FQKLGGKIP--KGVLMVGPPGTGKTLLAKAIAGEAKV 71 (256)
T ss_dssp C-----CCC--CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHCCCCCC--CEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 998699988--86786689988822899999998299
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.19 E-value=0.18 Score=24.21 Aligned_cols=125 Identities=18% Similarity=0.333 Sum_probs=68.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 74199799999689983789999987375678708998091999838987884018999704999996889999998231
Q 000553 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL 712 (1428)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L 712 (1428)
-+|.|.++-|.|+.|||||+|...+..+..... +.++|..-+- .+|+++ .+.+++
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g------~~v~yiDtE~---------------~~~~~~----a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG------GTCAFIDAEH---------------ALDPVY----ARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSC---------------CCCHHH----HHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC------CEEEEEECCC---------------CCCHHH----HHHHCC
T ss_conf 866754789805876522799999999997079------9899998876---------------589999----998289
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEECCCCCCC-----CHH-------HHHHHHHHH--
Q ss_conf 2888404599753026897766508999999999881--399988871784201-----099-------999999984--
Q 000553 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY--HGSDIYMLDDVLSAV-----DAQ-------VARWILSNA-- 776 (1428)
Q Consensus 713 ~~Di~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY--~~~~i~lLDD~lSaL-----D~~-------t~~~I~~~~-- 776 (1428)
+.| .+ .+-. .-++=|. +.++..+- .+.+++++|-..+-. +.. ...+.+.+.
T Consensus 108 d~d--~i------~~~~---~~~~E~~--~~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr 174 (268)
T d1xp8a1 108 NTD--EL------LVSQ---PDNGEQA--LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 174 (268)
T ss_dssp CGG--GC------EEEC---CSSHHHH--HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred CCH--HE------EEEC---CCCHHHH--HHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 812--37------9974---8999999--999999986589719999454545538887165341057799999999999
Q ss_pred -HCCCCCCCCEEEEECCCCC
Q ss_conf -2185668964999826831
Q 000553 777 -IMGPHMLQKTRILCTHNVQ 795 (1428)
Q Consensus 777 -i~g~ll~~kTvIlvTh~~~ 795 (1428)
+...+.+.++.+++||++.
T Consensus 175 ~l~~~~~~~~~~vi~tNQv~ 194 (268)
T d1xp8a1 175 KLTAILSKTGTAAIFINQVR 194 (268)
T ss_dssp HHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHHHCCCEEEEEEEEE
T ss_conf 97766643297699996786
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.016 Score=32.49 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCC
Q ss_conf 19979999968998378999998737567870899809199983898
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~p 681 (1428)
.+.-.++|+|+.|+|||||+..+...+....- ++|.+.=+|
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~------~vavlavDp 92 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL------KVAVIAVDP 92 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC------CEEEEEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC------CEEEECCCC
T ss_conf 98328974389999899999999999975698------332203777
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.03 E-value=0.025 Score=30.98 Aligned_cols=51 Identities=27% Similarity=0.413 Sum_probs=33.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE------------EECCEECCCCCHHHHHCC
Q ss_conf 795999987999948999999834798998469------------999961799993767235
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQI------------LVDGLNIINTPVRDLRGR 1268 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I------------~IDG~di~~i~~~~LR~~ 1268 (1428)
.|..+.|+|||||||+||.+.|+.-.+...-.. .+||+|---++.+...+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~ 63 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHH
T ss_conf 980999999999999999999986398668427888763678865543212334328999987
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.00 E-value=0.031 Score=30.23 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999689983789999987375
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
..++|+|+.|||||||.++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.97 E-value=0.04 Score=29.38 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=18.7
Q ss_pred HCCCCCEEEEC--CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 81399988871--7842010999999999842185668964999826831
Q 000553 748 VYHGSDIYMLD--DVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 795 (1428)
Q Consensus 748 lY~~~~i~lLD--D~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~ 795 (1428)
...+.|++++| +.+..-|....+.+-+ .+|-+++|-+..+
T Consensus 132 ~~~~~d~~l~~~~~~~~~~d~~l~~~l~~--------~~k~~~~V~nK~D 173 (400)
T d1tq4a_ 132 KFYEYDFFIIISATRFKKNDIDIAKAISM--------MKKEFYFVRTKVD 173 (400)
T ss_dssp TGGGCSEEEEEESSCCCHHHHHHHHHHHH--------TTCEEEEEECCHH
T ss_pred HHHCCEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCC
T ss_conf 33226599996588887889999999997--------6998799970863
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.94 E-value=0.19 Score=24.10 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7579599998799994899999983479
Q 000553 1216 IEGGTQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1216 I~~GekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
+++|+-+-|.|++|+|||++..-+..-.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8698499999189999999999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.88 E-value=0.035 Score=29.80 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994899999983479
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
+|.++|+||+|||||+++|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.096 Score=26.40 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=63.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCHHHH
Q ss_conf 95999987999948999999834798998469999961799993767235089807765567757883286999993789
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1298 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ei 1298 (1428)
-..|.|+|+.||||||+...|..-+ |-+.|+.- +-+|+.+ .+...-....+++-.+......|...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~ 73 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEIT 73 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf 7289998999999899999999985----99088535-------8999886---20101788998876400002320367
Q ss_pred HHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999980299999968993153059999992499999999987269978998465
Q 000553 1299 WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353 (1428)
Q Consensus 1299 ~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEa 1353 (1428)
...+...-...... +-+..+-++ +-....|...+.+.+.....++.||=+
T Consensus 74 ~~~~~~~~~~~~~~--~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 74 LALLRNAISDNVKA--NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHCC--CCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 89999998864003--777535404---313689999999861545543125798
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.021 Score=31.60 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9999968998378999998737567870899
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G~v~ 669 (1428)
.+.|+||.|+|||||++.+..++....+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999889997199999999999997799799
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.74 E-value=0.045 Score=29.01 Aligned_cols=27 Identities=37% Similarity=0.668 Sum_probs=23.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199799999689983789999987375
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
|+|..++|.|+.||||||+.+.|--.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.064 Score=27.79 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=33.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC
Q ss_conf 74199799999689983789999987375678708998091999838987
Q 000553 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682 (1428)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pW 682 (1428)
-+|+|+++.|.|+.|||||+|...++.+.............+.|.....-
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 82 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHH
T ss_conf 97689799998899887889999999999744431666624887401777
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.49 E-value=0.032 Score=30.13 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999996899837899999873756
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
+.--++++|+.|+|||||++.+.|+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 777899999999898999999967887
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.047 Score=28.86 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999968998378999998737567
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
.+++|+||+|+||+||.+.|+.+.+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~ 29 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPD 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 71999998999999999999970976
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.46 E-value=0.054 Score=28.35 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5795999987999948999999834798
Q 000553 1217 EGGTQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1217 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
++|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.45 E-value=0.044 Score=29.09 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++|+|.+.+|||||+++|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.41 E-value=0.042 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1997999996899837899999873756
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
++|.++.++|+.||||||+.++|.-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.30 E-value=0.052 Score=28.47 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999996899837899999873756
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
...++.|.|++||||||+.++|..++.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.25 E-value=0.047 Score=28.84 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|..|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996798
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.15 Score=24.84 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|..|+|||||++.+++.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.25 E-value=0.046 Score=28.94 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879999489999998347989
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPI 1245 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~ 1245 (1428)
.|||.|++|||||||.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.25 Score=23.13 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.++|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.00 E-value=0.067 Score=27.61 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=31.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCC
Q ss_conf 741997999996899837899999873756787089980919998389
Q 000553 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1428)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~ 680 (1428)
-+++|+++.|.|+.|||||+|..-++-........-...+.+.|...+
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~ 77 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 77 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 986996999983899988999999999863124312689639999402
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.96 E-value=0.003 Score=38.22 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.8
Q ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 01001474199799999689983789999987
Q 000553 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL 658 (1428)
Q Consensus 627 L~~inl~i~~G~l~~IvG~vGsGKStLL~alL 658 (1428)
.++.++++.+| +++|+|++||||||+|.||.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.054 Score=28.35 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.++|+|+.|+|||||+++|.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.80 E-value=0.057 Score=28.18 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++++|+.|+|||||++.+.++-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.80 E-value=0.23 Score=23.50 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996899837899999873756
Q 000553 640 VAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
..+.||.|+||||+.+++..|+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.76 E-value=0.069 Score=27.52 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999987999948999999834798
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
...|.|+|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.73 E-value=0.059 Score=28.08 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++++|+.|+|||||++.+.++-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.61 E-value=0.077 Score=27.14 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.59 E-value=0.072 Score=27.38 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5795999987999948999999834798
Q 000553 1217 EGGTQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1217 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
++|-.|.++|.+||||||+...|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.58 E-value=0.061 Score=27.94 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999996899837899999873756
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
.+++|+|+.||||||+.+.|..++.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.52 E-value=0.067 Score=27.63 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
+|+++|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.48 E-value=0.064 Score=27.81 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=66.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEEC--CCEEEECCCCCCCCCCH------HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999689983789999987375678708-9980--91999838987884018------999704999996889999998
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGS-IHAS--GSIAYVPQVPWILSGTI------RDNILFGKNYDPQSYSETLKA 709 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G~-v~~~--g~iayv~Q~pWl~n~TI------reNIlfg~~~d~~~Y~~vi~a 709 (1428)
-++|+|..+||||||+++|+|+=-.-.|. .... -.+-|- +++....+.- ....-....+|......-+..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLT-HLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEE-ECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE-CCCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 599981898979999999968997887897540688899994-5776667653065667762688622378999999999
Q ss_pred HC---------CHHHHHCC-----CCCCCCCCCCCCCCCCH-------HHHHHHHHHHHHCCCCC--EEEECCCCCCCCH
Q ss_conf 23---------12888404-----59975302689776650-------89999999998813999--8887178420109
Q 000553 710 CT---------LDVDISLM-----VGGDMAYIGEKGVNLSG-------GQRARLALARAVYHGSD--IYMLDDVLSAVDA 766 (1428)
Q Consensus 710 C~---------L~~Di~~l-----p~GD~T~iGe~G~~LSG-------GQkqRIaLARAlY~~~~--i~lLDD~lSaLD~ 766 (1428)
.. ...+.... -..+.+.|.--|.+-+. .+.+.-.+++...++++ |+...+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99874277776566506998247898880686588864436688403589999999999982777516876325631003
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 999999998421856689649998268
Q 000553 767 QVARWILSNAIMGPHMLQKTRILCTHN 793 (1428)
Q Consensus 767 ~t~~~I~~~~i~g~ll~~kTvIlvTh~ 793 (1428)
.....+.+. +.+ . ..+|++++|+-
T Consensus 185 ~~~~~~~~~-~~~-~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 185 SDALQLAKE-VDP-E-GKRTIGVITKL 208 (306)
T ss_dssp CSHHHHHHH-HCS-S-CSSEEEEEECT
T ss_pred CHHHHHHHH-HCC-C-CCEEEEEEECC
T ss_conf 499999997-386-7-88589998204
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.45 E-value=0.063 Score=27.83 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
.|+|+|++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.45 E-value=0.06 Score=28.00 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 97999996899837899999873756787
Q 000553 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1428)
Q Consensus 637 G~l~~IvG~vGsGKStLL~alLGe~~~~~ 665 (1428)
+.+++|.|+.||||||+++.|.-.+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.42 E-value=0.029 Score=30.43 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=24.4
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4741997999996899837899999873756
Q 000553 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 632 l~i~~G~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
+.-++|..+-++|.+||||||+.+.|.-.+.
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8589986999989999998999999998877
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.41 E-value=0.063 Score=27.84 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=31.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCC
Q ss_conf 999987999948999999834798998469999961799993767235089807765567
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1280 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~ 1280 (1428)
.|||.|++||||||+.+.|...+..... ..-...+.+++||.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--------------~~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--------------DYRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS--------------CGGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC--------------CCCCCCEEEEECCCCCCC
T ss_conf 9999899978799999999999641013--------------457884399934653224
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.063 Score=27.83 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5795999987999948999999834798
Q 000553 1217 EGGTQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1217 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
+.+..+.|+|++||||||+.+.|.+-+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.29 E-value=0.015 Score=32.73 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|+.|+|||||+++|.|+-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.23 E-value=0.063 Score=27.83 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999987999948999999834798
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
.+|+|+|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.05 E-value=0.075 Score=27.24 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999948999999834798
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
.|+|+|+.|||||||++.|.+-..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.03 E-value=0.078 Score=27.13 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.084 Score=26.86 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599998799994899999983479
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
..+.|+|||||||+||.+.|++-.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.00 E-value=0.24 Score=23.33 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=33.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHC
Q ss_conf 99799999689983789999987375678708998091999838987884018999704
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILF 694 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl~n~TIreNIlf 694 (1428)
+|.+++|-|+-||||||+.+.|.-.+.. +|.+.. .|...+....-||+-+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~~~------~p~~~~~~g~~ir~~l~~ 53 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKLLK------FPERSTRIGGLINEYLTD 53 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEEEE------SSCTTSHHHHHHHHHHHC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCEEEE------ECCCCCHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971-977999------789996076767776540
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.92 E-value=0.065 Score=27.74 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.++|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.87 E-value=0.071 Score=27.44 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998378999998737567
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.87 E-value=0.071 Score=27.42 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999948999999834798
Q 000553 1222 VGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1222 vgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
|.|+|||||||+||.+.|..-.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.84 E-value=0.15 Score=24.87 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=24.7
Q ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 010014741997999996899837899999873
Q 000553 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1428)
Q Consensus 627 L~~inl~i~~G~l~~IvG~vGsGKStLL~alLG 659 (1428)
+|.--+.+ .|.=+.+.|++|+||||+...++.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 78999999-999999981899998999999998
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.73 E-value=0.33 Score=22.17 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=11.4
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 799999689983789999987
Q 000553 638 SLVAVIGEVGSGKSSLLNSIL 658 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alL 658 (1428)
..++++||.|+||||.+.-|-
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp EEEEEECSCCC----HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998999999899999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.68 E-value=0.066 Score=27.68 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=24.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 5999987999948999999834798998469
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I 1250 (1428)
..|+|.|+.||||||+.+.|...+.....++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 8899989999898999999999998769986
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.65 E-value=0.11 Score=25.88 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994899999983479
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
+|||+|++.+|||||+++|.+.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.61 E-value=0.043 Score=29.18 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
+++|.|+.|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.51 E-value=0.074 Score=27.29 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 959999879999489999998347989
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRLTPI 1245 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl~~~ 1245 (1428)
.-+|||.|+.|||||||+..|.+.+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 328974389999899999999999975
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.51 E-value=0.078 Score=27.13 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999879999489999998347989984699999
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1254 (1428)
.|.|+|++||||||+.+.|.+-++ +...++|
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 899989999998999999999809---9889830
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.51 E-value=0.088 Score=26.69 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++|+|..+||||||+++|+|.=
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.49 E-value=0.084 Score=26.86 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999996899837899999873756
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.42 E-value=0.13 Score=25.47 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=71.2
Q ss_pred EEEEEE-EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 010014-7419979999968998378999998737567870899809199983898788401899970499999688999
Q 000553 627 LNQVSL-CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE 705 (1428)
Q Consensus 627 L~~inl-~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl~n~TIreNIlfg~~~d~~~Y~~ 705 (1428)
|+++-- -+++|+++.|.|+.|+|||+|..-++.+.....+ ..+.|++-+.- ...++....- ..++...+..
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~-----~~~~~~s~e~~--~~~~~~~~~~-~~~~~~~~~~ 86 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-----EPGVFVTFEET--PQDIIKNARS-FGWDLAKLVD 86 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-----CCEEEEESSSC--HHHHHHHHGG-GTCCHHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCCCCCCCCCC--HHHHHHHHHH-CCCCHHHHHH
T ss_conf 98855689969839999947999999999999999998568-----87420126679--9999999998-4998489887
Q ss_pred HHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHH-HH-HHHHHC-CCCCEEEECCCCCCC----CHHHHHHHHHHHHC
Q ss_conf 999823128884045997530268977665089999-99-999881-399988871784201----09999999998421
Q 000553 706 TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR-LA-LARAVY-HGSDIYMLDDVLSAV----DAQVARWILSNAIM 778 (1428)
Q Consensus 706 vi~aC~L~~Di~~lp~GD~T~iGe~G~~LSGGQkqR-Ia-LARAlY-~~~~i~lLDD~lSaL----D~~t~~~I~~~~i~ 778 (1428)
.- +.... +.....+.-.......... +. +.+++. .++++++.|....-. +......++..++.
T Consensus 87 ---~~----~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~ 156 (242)
T d1tf7a1 87 ---EG----KLFIL---DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVA 156 (242)
T ss_dssp ---TT----SEEEE---ECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHH
T ss_pred ---HC----CHHHH---HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ---14----30244---421033544443024589999999999886312220020788998760572678999999999
Q ss_pred CCCCCCCEEEEECCCCCH---------H-HCCCEEEEEE
Q ss_conf 856689649998268310---------2-0089899993
Q 000553 779 GPHMLQKTRILCTHNVQA---------I-SAADMVVVMD 807 (1428)
Q Consensus 779 g~ll~~kTvIlvTh~~~~---------l-~~aD~Iivl~ 807 (1428)
-....+.|++++.|...- . ..+|.++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 157 RLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 998639716884210255422246762335362999988
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.39 E-value=0.12 Score=25.73 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199799999689983789999987375
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
|+|--++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=0.15 Score=24.84 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97579599998799994899999983479
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
-+++|+.+-|.|++|||||++..-+..-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.17 E-value=0.093 Score=26.50 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999996899837899999873756
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
+.-+++|.|+.||||||+++.|-.++.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.10 E-value=0.1 Score=26.14 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998378999998737567
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
.++|+||+||||+|+.+.++.+.+.
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~ 26 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSS 26 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 1999999999999999999974887
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.12 Score=25.59 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=36.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCC--CCCCHHHHHHCCCCC
Q ss_conf 997999996899837899999873756787089980919998389878--840189997049999
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI--LSGTIRDNILFGKNY 698 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl--~n~TIreNIlfg~~~ 698 (1428)
+|.+++|-|+.||||||+.+.|...+... |- +.....++|+= ...-+|+....+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~-g~-----~~~~~~~ep~~~~~g~~i~~~~~~~~~~ 59 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQL-GI-----RDMVFTREPGGTQLAEKLRSLLLDIKSV 59 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT-TC-----CCEEEEESSCSSHHHHHHHHHHHSTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC-----CEEEEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf 98789998998887999999999999967-99-----7399832989961144558988462102
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=89.99 E-value=0.38 Score=21.73 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=27.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 9757959999879999489999998347989984699999617
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1257 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di 1257 (1428)
.+++...+-+.||.|+|||++++++.+.+... -+.+++-++
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 99988867866899888228999999982998--799886994
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.97 E-value=0.12 Score=25.66 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899837899999873756
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
-++++|+.|+|||||++.+.|+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.94 E-value=0.14 Score=25.06 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=40.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 57959999879999489999998347989984699999617999937672350898077655677578832869999937
Q 000553 1217 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1296 (1428)
Q Consensus 1217 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ 1296 (1428)
++|-+|.|+|+.||||||+.+.|..-+ |-..|+- -+-+|... ++..-..-.++..++-+....++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~~-------gdllr~~~----~~~~~~g~~~~~~~~~g~~~~~~ 65 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLAT-------GDMLRAMV----ASGSELGKKLKATMDAGKLVSDE 65 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEEH-------HHHHHHHH----HHTCHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH----HCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 996389998999998899999999986----9857757-------78899887----42674330233132167743330
Q ss_pred HHHHHHH
Q ss_conf 8999999
Q 000553 1297 KIWSVLE 1303 (1428)
Q Consensus 1297 ei~~aL~ 1303 (1428)
.+...+.
T Consensus 66 ~v~~~~~ 72 (190)
T d1ak2a1 66 MVLELIE 72 (190)
T ss_dssp HHHHHHH
T ss_pred EEEEEEH
T ss_conf 2453111
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.87 E-value=0.25 Score=23.10 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998378999998737
Q 000553 639 LVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe 660 (1428)
-++|+|+.|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998992989999999719
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.87 E-value=0.13 Score=25.26 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
.|+|+|++|+|||||+++|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.80 E-value=0.39 Score=21.62 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=24.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 975795999987999948999999834798
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
.+++...+-+.|++|+|||++++++.+-+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.80 E-value=0.11 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799999689983789999987375
Q 000553 637 GSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 637 G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.--++++|..|||||||++.+.|.-
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 5799999999989899999996688
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.80 E-value=0.1 Score=26.19 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999968998378999998737567
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
..+.+.||.||||||+.++|.+|+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.77 E-value=0.35 Score=22.05 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998378999998737
Q 000553 639 LVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe 660 (1428)
-++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.75 E-value=0.06 Score=28.02 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999689983789999987375
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
+|..+.++|+.||||||+.+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.75 E-value=0.11 Score=25.96 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689983789999987
Q 000553 639 LVAVIGEVGSGKSSLLNSIL 658 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alL 658 (1428)
+++|+|++||||||+.+.+-
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.72 E-value=0.11 Score=25.88 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599998799994899999983479
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.61 E-value=0.13 Score=25.50 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 49999999998726997--8998465669899979999999998369947998615
Q 000553 1330 GQRQLICLARALLKSSK--VLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1383 (1428)
Q Consensus 1330 GQrQll~LARAlL~~~~--ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaH 1383 (1428)
.+.+...+++..++++. |++...++.....+....+.+.+... ..+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEEC
T ss_conf 899999999999827775168763256310034999999973867-8858999820
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.47 E-value=0.15 Score=24.93 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 19979999968998378999998737567
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.45 E-value=0.12 Score=25.52 Aligned_cols=23 Identities=43% Similarity=0.790 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.++|+|.+.+|||||+++|++.-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.43 E-value=0.15 Score=24.95 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=26.3
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 419979999968998378999998737567
Q 000553 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 634 i~~G~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
+++|+++.|.|+.|+|||+|..-+.-....
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~~ 60 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQN 60 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 628859999917999989999999999985
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.40 E-value=0.13 Score=25.27 Aligned_cols=122 Identities=15% Similarity=0.263 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHC
Q ss_conf 99999689983789999987375678708998091999838987884018999704999996889999998231288840
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~~Di~~ 718 (1428)
+++|+|+.||||||..+.+ .+. |-..++ .+.+--+++ .-+...|..+.+.-.
T Consensus 4 iIgITG~igSGKStv~~~l-~~~----G~~vid-------------aD~i~~~l~---~~~~~~~~~i~~~~~------- 55 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLF-TDL----GVPLVD-------------ADVVAREVV---AKDSPLLSKIVEHFG------- 55 (205)
T ss_dssp EEEEECSTTSCHHHHHHHH-HTT----TCCEEE-------------HHHHHHHTT---CSSCHHHHHHHHHHC-------
T ss_pred EEEEECCCCCCHHHHHHHH-HHC----CCEEEE-------------CHHHHHHHH---HCCCHHHHHHHHHCC-------
T ss_conf 9998888878899999999-987----993997-------------469999998---611306899998503-------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH----HHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 459975302689776650899999999988139998887178420109----9999999984218566896499982683
Q 000553 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPHMLQKTRILCTHNV 794 (1428)
Q Consensus 719 lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaLD~----~t~~~I~~~~i~g~ll~~kTvIlvTh~~ 794 (1428)
+ ..-..-|.-.|-.||+.++.++.- ...+.. .+.+.+... +. ..+.+-+++...-+
T Consensus 56 ---~--------~~~~~d~~i~r~~l~~~vf~~~~~------~~~l~~i~hp~v~~~~~~~-~~--~~~~~~vv~e~~ll 115 (205)
T d1jjva_ 56 ---A--------QILTEQGELNRAALRERVFNHDED------KLWLNNLLHPAIRERMKQK-LA--EQTAPYTLFVVPLL 115 (205)
T ss_dssp ---T--------TCC------CHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHHH-HH--TCCSSEEEEECTTT
T ss_pred ---C--------CEECCCCCCCHHHHHHHHHHHHHH------HHHHHCCCCHHHHHHHHHH-HH--HCCCCEEEEEECCC
T ss_conf ---3--------110478865289886441001356------6676403678999999999-86--35698699971221
Q ss_pred ---CHHHCCCEEEEEEC
Q ss_conf ---10200898999939
Q 000553 795 ---QAISAADMVVVMDK 808 (1428)
Q Consensus 795 ---~~l~~aD~Iivl~~ 808 (1428)
.....+|.+++++-
T Consensus 116 ~e~~~~~~~d~ii~v~~ 132 (205)
T d1jjva_ 116 IENKLTALCDRILVVDV 132 (205)
T ss_dssp TTTTCGGGCSEEEEEEC
T ss_pred CCCCHHHHHHHEEEECC
T ss_conf 00000222112001211
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.38 E-value=0.12 Score=25.60 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994899999983479
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
++++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.36 E-value=0.13 Score=25.26 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999689983789999987375
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
+..+++|+||.||||||+.+.|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.34 E-value=0.097 Score=26.36 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799994899999983479
Q 000553 1222 VGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1222 vgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
|.|+|||||||+||.+.|..-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=89.29 E-value=0.081 Score=26.98 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.097 Score=26.38 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999996899837899999873756
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
++.+++|-|+.||||||+++.|-..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.16 E-value=0.14 Score=25.19 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
||+|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.15 E-value=0.21 Score=23.68 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999996899837899999873756
Q 000553 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 636 ~G~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
+.-.++|+|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.11 E-value=0.31 Score=22.41 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++++|..|+|||||++.++++-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=89.10 E-value=0.088 Score=26.71 Aligned_cols=21 Identities=57% Similarity=0.811 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999489999998347
Q 000553 1222 VGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1222 vgIvGrTGSGKSTLl~~L~rl 1242 (1428)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.07 E-value=0.14 Score=25.18 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|+.|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.96 E-value=0.082 Score=26.94 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 795999987999948999999834798
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.96 E-value=0.14 Score=25.08 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++|+|+.|+|||||++.+++.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.86 E-value=0.056 Score=28.25 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=29.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCC
Q ss_conf 7999996899837899999873756787089980919998389878
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 683 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl 683 (1428)
-+++|.|++||||||+.+++...+... +-+++.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.85 E-value=0.45 Score=21.13 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|+.|+|||||++.+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.84 E-value=0.14 Score=25.02 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999689983789999987375
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
--++|||-..+|||||++++.+--
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 348888999998899999997799
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.82 E-value=0.17 Score=24.53 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=33.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCC
Q ss_conf 741997999996899837899999873756787089980919998389
Q 000553 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1428)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~ 680 (1428)
-+++|.++.+.|+.|||||+|+..+..+.....| .+.|+.-+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~------~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEECCC
T ss_conf 9667358998057774789999999999870898------79998654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.81 E-value=0.14 Score=25.03 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899837899999873756
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
-++++|+.||||||+.+.|.-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.75 E-value=0.15 Score=24.82 Aligned_cols=21 Identities=38% Similarity=0.784 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|..|+|||||++.+++.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.72 E-value=0.15 Score=24.80 Aligned_cols=22 Identities=32% Similarity=0.705 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|+.|+|||||++.+.+.-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.67 E-value=0.31 Score=22.37 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=23.8
Q ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 010014741997999996899837899999873
Q 000553 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1428)
Q Consensus 627 L~~inl~i~~G~l~~IvG~vGsGKStLL~alLG 659 (1428)
+|.--+. -.|.=+.++|++|+||||+...++.
T Consensus 5 lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 8999999-9999999980899998999999998
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=88.66 E-value=0.13 Score=25.50 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.++|++|+|||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=88.65 E-value=0.47 Score=21.03 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=14.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999987999948999999834798
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
..+.+||+||+||||.+.=|...+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.64 E-value=0.16 Score=24.57 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
.|||+|+.++|||||+++|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.48 E-value=0.19 Score=24.11 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 19979999968998378999998737567
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
..+..++|.||.|+|||||++.++.+...
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~~ 55 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELNL 55 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 05987999869998299999999997799
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.47 E-value=0.14 Score=25.22 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996899837899999873
Q 000553 639 LVAVIGEVGSGKSSLLNSILG 659 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLG 659 (1428)
-++|+|++|||||||..+||=
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999995898998999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.46 E-value=0.41 Score=21.46 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998378999998737
Q 000553 639 LVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe 660 (1428)
-++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.30 E-value=0.17 Score=24.46 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++++|...+|||||++++.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.20 E-value=0.16 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++++|+.|+|||||++.+.++-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.10 E-value=0.16 Score=24.75 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999987999948999999834798
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
-.|+|-|..||||||+++.|.+-+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.99 E-value=0.19 Score=24.01 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
.|||+|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.96 E-value=0.15 Score=24.80 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79599998799994899999983479
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
+.-||.+||++|+|||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.94 E-value=0.18 Score=24.18 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
.|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=87.94 E-value=0.24 Score=23.26 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994899999983479
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
||.++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=87.80 E-value=0.18 Score=24.27 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999948999999834798
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
.|-++|++||||||+.+.|..-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.60 E-value=0.21 Score=23.78 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++|+|.+.+|||||+.+|+|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999934588499999999703
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.59 E-value=0.2 Score=23.98 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|+.|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.59 E-value=0.19 Score=24.04 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 95999987999948999999834798998469999
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1253 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1253 (1428)
...|.|+|+.||||||+...|..-+ |-+.|+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 9489998999998899999999997----992672
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.50 E-value=0.18 Score=24.20 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=19.6
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4199799999689983789999987375
Q 000553 634 LPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 634 i~~G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++.++.|.||.||||||..+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.48 E-value=0.16 Score=24.77 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 795999987999948999999834798
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
++..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.44 E-value=0.2 Score=23.86 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57959999879999489999998347
Q 000553 1217 EGGTQVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1217 ~~GekvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
++.=||.+||+.|+|||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.40 E-value=0.55 Score=20.48 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=17.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999987999948999999834798
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
..+.+||+||+||||.+.-|...+.
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 6899989999988999999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.25 E-value=0.23 Score=23.44 Aligned_cols=20 Identities=45% Similarity=0.772 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689983789999987
Q 000553 639 LVAVIGEVGSGKSSLLNSIL 658 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alL 658 (1428)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.24 E-value=0.26 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999968998378999998737567
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
....+.||.|+||||+.+++..++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.14 E-value=0.22 Score=23.62 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|+.|+|||||++.+++.-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999998299
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.12 E-value=0.23 Score=23.40 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879999489999998347989
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPI 1245 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~ 1245 (1428)
.|.+||++||||||+.+.|.+.+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899999999999999999974
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=87.10 E-value=0.011 Score=33.75 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=27.6
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 202225997579599998799994899999983479
Q 000553 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1208 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
..++.++.+.+| ...|+|++||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.09 E-value=0.33 Score=22.17 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 010014741997999996899837899999873
Q 000553 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1428)
Q Consensus 627 L~~inl~i~~G~l~~IvG~vGsGKStLL~alLG 659 (1428)
+|..-+ .-.|.=+.+.|++|+||||+...++.
T Consensus 6 ~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVLV-DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEEE-EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 889999-99999999980899999999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=87.09 E-value=0.099 Score=26.31 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999996899837899999873756
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
--++++|++++|||||+++|.|+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7899988999989999999858985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.07 E-value=0.22 Score=23.54 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999879999489999998347
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
.||+++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.01 E-value=0.27 Score=22.87 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999968998378999998737567
Q 000553 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
++|+|.|.+|||||+.+|+|....
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 999972488699999999704121
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=0.26 Score=23.01 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|+.|+|||||++.+++.-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=86.92 E-value=0.22 Score=23.62 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
.|||+|..||||||+...|-.+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=86.68 E-value=0.27 Score=22.86 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 9999968998378999998737567870
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G 666 (1428)
-..+.||.|+||||+.+++..|+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.63 E-value=0.21 Score=23.74 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=22.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7419979999968998378999998737567
Q 000553 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
..++|.++.+.|+.|||||||.++++..+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.59 E-value=0.22 Score=23.61 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=19.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9599998799994899999983479
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
.-+|||.|+-|+|||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.59 E-value=0.25 Score=23.20 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++++|..|+|||||++.+++.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.55 E-value=0.21 Score=23.69 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799999689983789999987375
Q 000553 637 GSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 637 G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
+--++|+|...+|||||++++.+.-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7379997899998999999997789
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.54 E-value=0.24 Score=23.32 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=26.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 741997999996899837899999873756
Q 000553 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
.+|++....++||.|+|||++.+++.+++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.47 E-value=0.37 Score=21.78 Aligned_cols=24 Identities=46% Similarity=0.556 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999968998378999998737567
Q 000553 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
++++|..|+|||||++.+.+.-..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999998992999999999728677
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.45 E-value=0.25 Score=23.19 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|+.|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.42 E-value=0.29 Score=22.67 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996899837899999873756
Q 000553 640 VAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
++++|..|+|||||++.+.+.-.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.24 E-value=0.29 Score=22.60 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994899999983479
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
.|||.|.+|||||||...|...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.21 E-value=0.28 Score=22.72 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++|+|..|+|||||++.+++.-
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.17 E-value=0.63 Score=20.00 Aligned_cols=46 Identities=13% Similarity=0.351 Sum_probs=35.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 69978998465669899979999999998369947998615803664
Q 000553 1343 KSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1389 (1428)
Q Consensus 1343 ~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~ 1389 (1428)
.+.+++++||+-. +..+....+.+.+.+...++.+|.++++.+-+.
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHH
T ss_conf 8724999424333-454311122100221356643000102111002
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.10 E-value=0.29 Score=22.68 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998378999998737567
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
+++|.|..||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.04 E-value=0.27 Score=22.84 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|+.|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.95 E-value=0.29 Score=22.66 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999968998378999998737567
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
-.++|-||.||||||..+.|.-++..
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 59997899987989999999999699
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.94 E-value=0.24 Score=23.30 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|+.|+|||||++.+++.-
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.94 E-value=0.28 Score=22.83 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++|+|+.|+|||||++.+++.-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999939999999996299
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.91 E-value=0.37 Score=21.84 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999948999999834798
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
.|||+|...+|||||+++|.+...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.90 E-value=0.2 Score=23.96 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.++|.||.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.79 E-value=0.26 Score=23.00 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 999996899837899999873756787089980
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~ 671 (1428)
.+.|-|+.||||||+++.|-.++....+.+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~ 40 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP 40 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999988866789999999999865699769982
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.76 E-value=0.25 Score=23.19 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|..|+|||||++.++++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.70 E-value=0.3 Score=22.51 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++|+||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.61 E-value=0.46 Score=21.10 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=33.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEE
Q ss_conf 97579599998799994899999983479899846-9999961
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ-ILVDGLN 1256 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~-I~IDG~d 1256 (1428)
=+++|..+-|.|++||||||+...+..-..-..|. ++||.-.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=85.60 E-value=0.31 Score=22.45 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
.++|+||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.54 E-value=0.23 Score=23.37 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=31.5
Q ss_pred EEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99971178605788533355401001474199799999689983789999987375
Q 000553 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 606 i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
|+=+++.+....+ .-..|+.++= |=.++.|+|+.++|||+||+.++|..
T Consensus 8 i~~~~~~l~~~~e----~l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 8 IENTNGRLMANPE----ALKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEETTEEEECHH----HHHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEECHH----HHHHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9769994998999----9999970799---87999988999997999999980998
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=85.35 E-value=0.3 Score=22.58 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|+.||||||+.+.|-..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=85.35 E-value=0.34 Score=22.06 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=30.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
Q ss_conf 57959999879999489999998347989--984699999617
Q 000553 1217 EGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNI 1257 (1428)
Q Consensus 1217 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~--~~G~I~IDG~di 1257 (1428)
++|-.|-+.|.+||||||+.+.|...+.. .--.+.+||-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.33 E-value=0.4 Score=21.52 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=24.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 975795999987999948999999834
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTLl~~L~r 1241 (1428)
=+++|+.+-|.|++|||||++..-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.25 E-value=0.31 Score=22.41 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.20 E-value=0.3 Score=22.55 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++|+|.+++|||||+.+|++..
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999478984999999999985
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.18 E-value=0.33 Score=22.18 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=24.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 57959999879999489999998347989
Q 000553 1217 EGGTQVGIVGRTGAGKSSILNALFRLTPI 1245 (1428)
Q Consensus 1217 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~ 1245 (1428)
+.|-.|+|.|.-||||||++..|..-+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.17 E-value=0.31 Score=22.47 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.8
Q ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0014741997999996899837899999873756
Q 000553 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 629 ~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
|.=+.+-+||-.+|.|+.|+|||+|+..|.....
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.14 E-value=0.32 Score=22.30 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHH-CCCC
Q ss_conf 9999689983789999987-3756
Q 000553 640 VAVIGEVGSGKSSLLNSIL-GEMM 662 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alL-Ge~~ 662 (1428)
++++|..|+|||||++.++ |+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~~~~~ 28 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAGRFP 28 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999999992989999999739998
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.07 E-value=0.28 Score=22.78 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=52.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH-HCCEEEEECCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 999987999948999999834798998469999961799993767-2350898077655677578832869999937899
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1299 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~L-R~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ei~ 1299 (1428)
+|.|.|+.||||||+...|..-+ |-..|+ ..++ |..+ +...-....+.+.++.+....++...
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~----~~~~is--------~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~ 68 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY----QLAHIS--------AGDLLRAEI----AAGSENGKRAKEFMEKGQLVPDEIVV 68 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH----CCEECC--------HHHHHHHHH----HHTCHHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEE--------HHHHHHHHH----HCCCHHHHHHHHHHHCCCCCCCEEEH
T ss_conf 99998899999899999999987----991785--------007888764----11337899999998668854321210
Q ss_pred HHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999980299999968993153059999992499999999987269978998465
Q 000553 1300 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353 (1428)
Q Consensus 1300 ~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEa 1353 (1428)
......-........|+ +-++ +..-..|...+.+...+...+++||-+
T Consensus 69 ~~~~~~~~~~~~~~~~~---vid~---~~~~~~q~~~l~~~~~~p~~~i~L~~~ 116 (189)
T d1zaka1 69 NMVKERLRQPDAQENGW---LLDG---YPRSYSQAMALETLEIRPDTFILLDVP 116 (189)
T ss_dssp HHHHHHHHSHHHHHTCE---EEES---CCCSHHHHHHHHTTTCCCSEEEEEECC
T ss_pred HHHHHHHHHCCCCCCCE---EEEC---CCHHHHHHHHHHHCCCCCCHHEEECHH
T ss_conf 35666765301446737---9606---212467775443013451121011100
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.07 E-value=0.28 Score=22.78 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|..|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.01 E-value=0.34 Score=22.07 Aligned_cols=28 Identities=39% Similarity=0.643 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999987999948999999834798998469999
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1253 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1253 (1428)
.|||+|..||||||..+.|-.+ |--.+|
T Consensus 5 iIgitG~igSGKStv~~~l~~~-----G~~vid 32 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL-----GINVID 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT-----TCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCCEEE
T ss_conf 9997898868899999999987-----991997
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.99 E-value=0.33 Score=22.21 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|..|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=84.91 E-value=0.44 Score=21.25 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=22.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97579599998799994899999983
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALF 1240 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTLl~~L~ 1240 (1428)
-+++|+.+-|.|++|+|||++..-+.
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99698399999479999999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.83 E-value=0.41 Score=21.47 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
|+.++|..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.74 E-value=0.22 Score=23.61 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998378999998737
Q 000553 639 LVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe 660 (1428)
-++++|+.|+|||||++.+.++
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999887338
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.73 E-value=0.25 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998378999998737567
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
...+.||.|+||||+.+++..++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6999789997487999999999873
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.72 E-value=0.34 Score=22.07 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
||.+||.+|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.42 E-value=0.17 Score=24.41 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCC
Q ss_conf 9999879999489999998347989984699999617999937672350898077655
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1278 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~l 1278 (1428)
.|||+|.|||||||+.+.|...+... | -...+|+||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.36 E-value=0.36 Score=21.94 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|..|+|||||++.++++-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949899999997299
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.31 E-value=0.37 Score=21.80 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=33.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCC
Q ss_conf 7419979999968998378999998737567870899809199983898
Q 000553 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681 (1428)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~p 681 (1428)
-+++|.++.+.|+.|||||+|+..+..+.....| .+.|+.-+-
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~------~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG------VAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC------EEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEEECCC
T ss_conf 8666336999648874889999999998754898------899998976
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.31 E-value=0.32 Score=22.27 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998378999998737
Q 000553 639 LVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe 660 (1428)
-++++|..|+|||||++.+++.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.29 E-value=0.33 Score=22.25 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1997999996899837899999873756
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
|++.+ ..+||+|||||.|.+++..++.
T Consensus 48 ~~~~i-Ll~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNI-LMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCE-EEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHCCC
T ss_conf 98669-9989999888899999862132
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=84.22 E-value=0.32 Score=22.29 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++++|+.||||||+.+.+--.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.19 E-value=0.76 Score=19.35 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=25.7
Q ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 100147419979999968998378999998737567
Q 000553 628 NQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 628 ~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
+...+..++| +.+.||.|||||++.+++..+...
T Consensus 31 ~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~~~~ 64 (258)
T d1e32a2 31 KAIGVKPPRG--ILLYGPPGTGKTLIARAVANETGA 64 (258)
T ss_dssp HHCCCCCCCE--EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHCCCCCCCE--EEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 8679998864--687669988830899999987488
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=84.16 E-value=0.31 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5999987999948999999834
Q 000553 1220 TQVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~r 1241 (1428)
=||.++|+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.15 E-value=0.4 Score=21.54 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=10.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689983789999987
Q 000553 639 LVAVIGEVGSGKSSLLNSIL 658 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alL 658 (1428)
+++|+|+.||||||..+.+.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.09 E-value=0.079 Score=27.09 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
||+++|++|+|||||+++|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.06 E-value=0.41 Score=21.47 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998378999998737
Q 000553 639 LVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe 660 (1428)
-++++|..|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.00 E-value=0.56 Score=20.42 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 79599998799994899999983479899846
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1249 (1428)
+|-.|+|-|.-||||||++..|...++. .|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf 7689999899888699999999999971-977
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=83.99 E-value=0.48 Score=20.94 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
Q ss_conf 795999987999948999999834798998469999961799
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1259 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~ 1259 (1428)
.+..+.+||+||+||||.+.=|...+.-.+-++.+=..|...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R 46 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 46 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 977999989999988999999999999779907999813666
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.97 E-value=0.57 Score=20.32 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 979999968998378999998737567870
Q 000553 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1428)
Q Consensus 637 G~l~~IvG~vGsGKStLL~alLGe~~~~~G 666 (1428)
..-+.|.||.|+|||++++++..++....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.95 E-value=0.42 Score=21.41 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998378999998737
Q 000553 639 LVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe 660 (1428)
-++++|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.89 E-value=0.34 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++|+|..|+|||||++.+.+.-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=83.88 E-value=0.79 Score=19.25 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=28.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC
Q ss_conf 199799999689983789999987375678708998091999838987
Q 000553 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682 (1428)
Q Consensus 635 ~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pW 682 (1428)
+++..++++||.|+||||.+.-|--.+. ..|. +|+.+.=+.+
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g~-----kV~lit~Dt~ 45 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGK-----KVMFCAGDTF 45 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTTC-----CEEEECCCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCC-----CEEEEEECCC
T ss_conf 9977999989999988999999999999-7799-----0799981366
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.82 E-value=0.36 Score=21.95 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7959999879999489999998347
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
|.=.|||+|+.++|||||+..|+..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9719999947898499999999998
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.80 E-value=0.39 Score=21.61 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.+||.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.77 E-value=0.34 Score=22.06 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|..|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.75 E-value=0.34 Score=22.06 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|..|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.71 E-value=0.35 Score=21.97 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999968998378999998737567
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
++++|-|..||||||+++.|--.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.70 E-value=0.4 Score=21.59 Aligned_cols=22 Identities=45% Similarity=0.678 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|..|+|||||++.+.+.-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989908899999997199
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.69 E-value=0.37 Score=21.82 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++||.||||||..+.|.-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799999899999999986
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.67 E-value=0.44 Score=21.23 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.++|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.66 E-value=0.5 Score=20.79 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999879999489999998347989984699999
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1254 (1428)
-+-++|++|+||||++.+|.+-+. .+-+.|++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--CCEEEEEC
T ss_conf 999889799889999999999865--15489832
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=83.65 E-value=0.43 Score=21.29 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999948999999834798
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
+|+|-||.||||||+.+.|..-+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.62 E-value=0.4 Score=21.51 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
||.+||..|+|||||++.+..-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.55 E-value=0.36 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999996899837899999873756
Q 000553 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 638 ~l~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
.+++|.|+.||||||+.+.|-..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.49 E-value=0.41 Score=21.48 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|+.|+|||||++.+++.
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992999999999719
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.46 E-value=0.26 Score=23.05 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998378999998737
Q 000553 639 LVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe 660 (1428)
-++++|+.|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.37 E-value=0.43 Score=21.34 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
||.+||..|+|||||++.+.+=
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.29 E-value=0.41 Score=21.47 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994899999983479
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
+|.|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.28 E-value=0.45 Score=21.13 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=62.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99998799994899999983479899846999996179999376723508980776556775788328699999378999
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1300 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ei~~ 1300 (1428)
+|.|.|+.||||||..+.|..-+ |-..|+- -+-+|..+ -++...+.-.+.+.+.-+....|+.+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697211340367
Q ss_pred HHHHCCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC---EEEEECC
Q ss_conf 99980299999968-99315305999999249999999998726997---8998465
Q 000553 1301 VLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK---VLCLDEC 1353 (1428)
Q Consensus 1301 aL~~~~L~~~i~~l-gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~---ILiLDEa 1353 (1428)
.+... +....... .-+..+-++ +...+.|.-.+.+.+-.... ++++|.+
T Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~g---~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 69 LLKRE-MDQTMAANAQKNKFLIDG---FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHH-HHHHHHHCTTCCEEEEES---CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHH-HCCCCHHHHCCCCEEECC---CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 88876-412100011245111011---030489999986442105543389962476
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.27 E-value=0.35 Score=21.97 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++.|.|.-|||||||++-++.+-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=0.5 Score=20.82 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.++|..|+|||||++.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.19 E-value=0.41 Score=21.48 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879999489999998347989
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPI 1245 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~ 1245 (1428)
.+.|.|..||||||+++.|...+.-
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999898998989999999999987
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.16 E-value=0.51 Score=20.74 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 975795999987999948999999834
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTLl~~L~r 1241 (1428)
=|++|+.+-|.|++|+|||++...+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.13 E-value=0.39 Score=21.61 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
||.++|..|+|||||++.+..-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.04 E-value=0.54 Score=20.53 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97579599998799994899999983
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALF 1240 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTLl~~L~ 1240 (1428)
=+++|+.+-|.|++||||||+..-+.
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=82.99 E-value=0.82 Score=19.12 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=27.2
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2022259975795999987999948999999834
Q 000553 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1208 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~r 1241 (1428)
.++.-.+.+ .|.-+.|+|++|+||||+...|.+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=82.99 E-value=0.49 Score=20.84 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7959999879999489999998347989
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLTPI 1245 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~~~ 1245 (1428)
.|..|.|-|.-||||||++..|...++.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.93 E-value=0.43 Score=21.33 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++|+|+.|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.90 E-value=0.27 Score=22.93 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|..|+|||||++.+++.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.88 E-value=0.33 Score=22.21 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996899837899999873756
Q 000553 640 VAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
..+.||.|+||||+.+++..|+.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999984999999999970
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.84 E-value=0.45 Score=21.13 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79599998799994899999983479
Q 000553 1218 GGTQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1218 ~GekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
.+..+.|.|+.|+|||||+..+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=82.84 E-value=0.55 Score=20.44 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 975795999987999948999999834
Q 000553 1215 TIEGGTQVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1215 ~I~~GekvgIvGrTGSGKSTLl~~L~r 1241 (1428)
-+++|+.+-|.|++|+|||++..-+.-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.74 E-value=0.46 Score=21.07 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.++|.+|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=82.60 E-value=0.45 Score=21.17 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999987999948999999834798998469999
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1253 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1253 (1428)
.|.++|.+||||||+.+.|..-+ |--.+|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.54 E-value=0.48 Score=20.92 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|..|+|||||++.+++.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.44 E-value=0.27 Score=22.91 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 999996899837899999873756787089
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G~v 668 (1428)
-+.|+|++|||||++++.++-+.-...+.+
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ 81 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLLRGDRM 81 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 589990799968999999999998479988
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.44 E-value=0.37 Score=21.86 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=14.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599998799994899999983479
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
.-+.++||||+|||.|.++|.+.+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 669998999988889999986213
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.40 E-value=0.57 Score=20.37 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=26.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC-----CCCCCCE-----EEECCEEC
Q ss_conf 59999879999489999998347-----9899846-----99999617
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRL-----TPICGGQ-----ILVDGLNI 1257 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl-----~~~~~G~-----I~IDG~di 1257 (1428)
-||.++|..|+|||||++.+..- ++|+.|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.39 E-value=0.52 Score=20.65 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=9.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999689983789999987
Q 000553 640 VAVIGEVGSGKSSLLNSIL 658 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alL 658 (1428)
++|.||.||||||+.+.|.
T Consensus 3 I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998899999799999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.38 E-value=0.38 Score=21.70 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999968998378999998737567
Q 000553 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
+.+.||.|+||||+.+++.+|+..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898897998788899999998498
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.27 E-value=0.36 Score=21.93 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++++|+.||||||+.+.+-..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.25 E-value=0.55 Score=20.48 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
||.++|..|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.19 E-value=0.46 Score=21.07 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=29.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC----CCEEEECCCC
Q ss_conf 999996899837899999873756787089980----9199983898
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS----GSIAYVPQVP 681 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~----g~iayv~Q~p 681 (1428)
=+.++||+|||||-|.+.|-+++.. --+.++ ..++||..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC----CCCCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCEEEECCEEECCH
T ss_conf 4799899998899999999987389--88986255114111110444
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=82.13 E-value=0.51 Score=20.75 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=82.13 E-value=0.48 Score=20.94 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 59999879999489999998347989984699999
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1254 (1428)
+.|-++|..||||||+.+.|..-+. --.+|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg----~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG----YEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT----CEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC----CCEEEH
T ss_conf 9889988999988999999999949----987865
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.05 E-value=0.51 Score=20.71 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.++|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=81.95 E-value=0.5 Score=20.82 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998378999998737567
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~ 663 (1428)
+++|-||.||||||..+.|...+..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=81.91 E-value=0.92 Score=18.71 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=10.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799994899999983
Q 000553 1221 QVGIVGRTGAGKSSILNALF 1240 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~ 1240 (1428)
.+.+||+||+||||.+.=|.
T Consensus 13 vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999998899999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.91 E-value=0.57 Score=20.37 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999948999999834798
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
||.++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.90 E-value=0.5 Score=20.80 Aligned_cols=33 Identities=33% Similarity=0.340 Sum_probs=25.0
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 202225997579599998799994899999983479
Q 000553 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1208 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
+|+.++ .|=-.|+|+|+.++|||+|++.|++-.
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=81.90 E-value=0.55 Score=20.47 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC---CCCCCEE
Q ss_conf 99998799994899999983479---8998469
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLT---PICGGQI 1250 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~---~~~~G~I 1250 (1428)
.|+|-||.||||||+.+.|..-+ ..++|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 899779998898999999999969908988899
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=81.82 E-value=0.5 Score=20.77 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999948999999834798
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
+|.|+|+.||||||+...|..-+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.79 E-value=0.7 Score=19.66 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994899999983479
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
+++|||+.-+|||||+++|.+--
T Consensus 114 ~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 114 RALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 78998667544355542542661
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.78 E-value=0.53 Score=20.59 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5999987999948999999834
Q 000553 1220 TQVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~r 1241 (1428)
=||.+||..|+|||||++.+.+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.69 E-value=0.54 Score=20.55 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.63 E-value=0.49 Score=20.86 Aligned_cols=177 Identities=12% Similarity=0.173 Sum_probs=86.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC---CCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCC-CCCCHHHHC--CCCCCCC
Q ss_conf 999987999948999999834---7989984699999617999937672350898077655-677578832--8699999
Q 000553 1221 QVGIVGRTGAGKSSILNALFR---LTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNL--DPFHMND 1294 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r---l~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~l-f~gTIR~NL--dp~~~~s 1294 (1428)
.|||+|..|||||||+.+|+- ..+ ..|++. ||-.+.+...+...+.+++-+.-..+ +.+ -+-|+ .|+...=
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~-~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKD-HRINIIDAPGHVDF 84 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETT-EEEEEECCCSSSSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCC-EEEEEECCCCHHHH
T ss_conf 999995898998999999999648534-023365-184698565888751886001123431598-38999527860226
Q ss_pred HHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHH
Q ss_conf 37899999980299999968993153059999992499999999987269978998---465669899979999999998
Q 000553 1295 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL---DECTANVDAQTASILQNAISS 1371 (1428)
Q Consensus 1295 d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiL---DEaTs~lD~~Te~~I~~~i~~ 1371 (1428)
-.+...++..+.. --.|-+.....-.+-++..-.|+.. +-|+|+.+ |-+-+.. ..+.+.|++
T Consensus 85 ~~e~~~~l~~~D~---------avlVvda~~Gv~~~T~~~w~~a~~~-~lP~i~fINKmDr~~ad~-----~~~l~ei~~ 149 (276)
T d2bv3a2 85 TIEVERSMRVLDG---------AIVVFDSSQGVEPQSETVWRQAEKY-KVPRIAFANKMDKTGADL-----WLVIRTMQE 149 (276)
T ss_dssp STTHHHHHHHCCE---------EEEEEETTTSSCHHHHHHHHHHHTT-TCCEEEEEECTTSTTCCH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------EEEECCCCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCC-----CHHHHHHHH
T ss_conf 9999999996300---------5773225677446699999999985-999799986445654312-----126899999
Q ss_pred HCC-CCEEEEECCC----HHHHHH--CCEEEEEEC---CEEEEECCHHHHHCCC
Q ss_conf 369-9479986158----036640--097999949---8597866945885039
Q 000553 1372 ECK-GMTVITIAHR----ISTVLN--MDEILILDH---GHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1372 ~f~-~~TvI~IaHR----l~ti~~--~DrI~vl~~---G~ivE~g~p~~Ll~~~ 1415 (1428)
.+. ++..+.+-=. ...+.| ..+.+.-++ ++..+..-|+++.+..
T Consensus 150 ~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~ 203 (276)
T d2bv3a2 150 RLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQA 203 (276)
T ss_dssp TTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHH
T ss_pred HHCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCHHHHHHH
T ss_conf 859971789833457875138850561089985588886540025856777777
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.45 E-value=0.53 Score=20.60 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999948999999834798
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
+|.++|..||||||+.+.|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.41 E-value=0.35 Score=22.02 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=68.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCH
Q ss_conf 75795999987999948999999834798998469999961799993767235089807765567757883286999993
Q 000553 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDD 1295 (1428)
Q Consensus 1216 I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd 1295 (1428)
++.+..|-|.|+.||||||+.+.|..-+ |-..|+.-| -+|+.+ ...+ ...-.+.+.++.+...+|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~~-~~~~~~~~~~~~~~~~~~ 69 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSGS-ARGKMLSEIMEKGQLVPL 69 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHTC-HHHHHHHHHHTTTCCCCH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHH---HHHH-HHHHHHHHHHHHCCCCCH
T ss_conf 4678289998999998799999999986----984683347-------899999---8767-651456777763137762
Q ss_pred HHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 7899999980299999968--993153059999992499999999987269978998465
Q 000553 1296 LKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353 (1428)
Q Consensus 1296 ~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEa 1353 (1428)
+.+...+... +... .....+-++ +.....|.-.+.+.+.....++.+|.+
T Consensus 70 ~~~~~~~~~~-----l~~~~~~~~g~ildg---~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 70 ETVLDMLRDA-----MVAKVDTSKGFLIDG---YPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHH-----HHTTTTTCSCEEEES---CCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HEEEEEHHHH-----HHHCCCCCCCCEEEE---CCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 2244102456-----640322356602431---110157899999983775200003331
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.40 E-value=0.56 Score=20.41 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++++|..|+|||||++.++++
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.32 E-value=0.53 Score=20.58 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689983789999987375
Q 000553 640 VAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~ 661 (1428)
++|+|.+.+|||||+.+|++..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999588980999999999999
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=81.27 E-value=0.47 Score=21.01 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996899837899999873756
Q 000553 640 VAVIGEVGSGKSSLLNSILGEMM 662 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe~~ 662 (1428)
++++|.|.+|||||+.+||.+..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~g 34 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDSK 34 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99993789898999999999869
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.21 E-value=0.55 Score=20.46 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998378999998737
Q 000553 640 VAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 640 ~~IvG~vGsGKStLL~alLGe 660 (1428)
++|+|..|+|||||++.++..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.11 E-value=0.68 Score=19.73 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 959999879999489999998347989984
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRLTPICGG 1248 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G 1248 (1428)
...+-|.|++|+||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.11 E-value=0.8 Score=19.17 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5795999987999948999999834798
Q 000553 1217 EGGTQVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1217 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
+|.=.|||+|.-.+|||||+..|++...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.96 E-value=0.56 Score=20.43 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998378999998737
Q 000553 639 LVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe 660 (1428)
-++++|..|+|||||++.++..
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=80.95 E-value=0.99 Score=18.47 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=46.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHC
Q ss_conf 99999689983789999987375678708998091999838987884018999704999996889999998231288840
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~pWl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~~Di~~ 718 (1428)
++.|+|.+.||||.+...+.+.. +++-|++- +.++|+++-+++-+-- +.
T Consensus 1 iiLVtGGarSGKS~~AE~l~~~~----------~~~~YiAT---------------~~~~D~em~~RI~~Hr------~r 49 (180)
T d1c9ka_ 1 MILVTGGARSGKSRHAEALIGDA----------PQVLYIAT---------------SQILDDEMAARIQHHK------DG 49 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCSC----------SSEEEEEC---------------CCC------CHHHHHH------HT
T ss_pred CEEEECCCCCCHHHHHHHHHHCC----------CCCEEEEC---------------CCCCCHHHHHHHHHHH------HC
T ss_conf 98997898765999999998458----------98289974---------------6789988999999999------65
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 4599753026897766508999999999881399988871784
Q 000553 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 761 (1428)
Q Consensus 719 lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~l 761 (1428)
=|.+-.|.-.. .+|.. +-++.-...+++|+|...
T Consensus 50 R~~~w~tiE~~--~~l~~-------~l~~~~~~~~~vLlDclt 83 (180)
T d1c9ka_ 50 RPAHWRTAECW--RHLDT-------LITADLAPDDAILLECIT 83 (180)
T ss_dssp SCTTEEEECCS--SCGGG-------TSCTTSCTTCEEEEECHH
T ss_pred CCCCCEEECCC--CCHHH-------HHHHHCCCCCCHHHHHHH
T ss_conf 86788785164--44799-------997514766521355320
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.94 E-value=0.78 Score=19.26 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.+||..|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.87 E-value=0.53 Score=20.58 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.87 E-value=0.54 Score=20.54 Aligned_cols=21 Identities=19% Similarity=0.494 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.86 E-value=0.62 Score=20.05 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879999489999998347989
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPI 1245 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~ 1245 (1428)
.|+|.|.-||||||+++.|...++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=80.79 E-value=0.61 Score=20.09 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=26.9
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCC
Q ss_conf 4741997999996899837899999873756787089980919998389
Q 000553 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1428)
Q Consensus 632 l~i~~G~l~~IvG~vGsGKStLL~alLGe~~~~~G~v~~~g~iayv~Q~ 680 (1428)
+.-.+...++++||.|+||||.+.-|--.+. .+| .+|+.+.=+
T Consensus 6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~-----~kV~lit~D 48 (213)
T d1vmaa2 6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG-----KSVVLAAAD 48 (213)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT-----CCEEEEEEC
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEEC
T ss_conf 7999998999989999988999999999999-779-----906999601
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.72 E-value=0.6 Score=20.19 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++++|..|+|||||++.+.+.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999989989999999997098
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.66 E-value=0.56 Score=20.40 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=94.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCEEEEECCCC-CCCCCHHHHC--CCCCCCCH
Q ss_conf 999987999948999999834798--998469999961799993767235089807765-5677578832--86999993
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTP--ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LFEGSLRDNL--DPFHMNDD 1295 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~--~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~-lf~gTIR~NL--dp~~~~sd 1295 (1428)
.|||+|..|+|||||+.+|+..-- ...|++. +|....+...+...+.+++-+.-.. .+.| .+-|+ .|+...=-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155433
Q ss_pred HHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7899999980299999968993153059999992499999999987269978998---4656698999799999999983
Q 000553 1296 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL---DECTANVDAQTASILQNAISSE 1372 (1428)
Q Consensus 1296 ~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiL---DEaTs~lD~~Te~~I~~~i~~~ 1372 (1428)
.+...++..+.. --.|-+.-.....+-++.+-.|+.. +.|.++++ |.+ + |.. ...+.+++.
T Consensus 82 ~e~~~al~~~D~---------avlvvda~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~-~--~~~---~~l~~~~~~ 145 (267)
T d2dy1a2 82 GEIRGALEAADA---------ALVAVSAEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG-G--DYY---ALLEDLRST 145 (267)
T ss_dssp HHHHHHHHHCSE---------EEEEEETTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC-C--CHH---HHHHHHHHH
T ss_pred HHHHHHHCCCCC---------EEEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC-C--CCH---HHHHHHHHH
T ss_conf 556543124673---------3898423577421157887765540-44310133320222-2--101---234468887
Q ss_pred CCCCEEEEECC----CHHHHHH--CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 69947998615----8036640--097999949859786694588503
Q 000553 1373 CKGMTVITIAH----RISTVLN--MDEILILDHGHLVEQGNPQTLLQD 1414 (1428)
Q Consensus 1373 f~~~TvI~IaH----Rl~ti~~--~DrI~vl~~G~ivE~g~p~~Ll~~ 1414 (1428)
+..+.-+.+-. ....+.| ..+.+..++|.-.+..-|.++.+.
T Consensus 146 lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~ 193 (267)
T d2dy1a2 146 LGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERER 193 (267)
T ss_dssp HCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHH
T ss_pred HCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHHH
T ss_conf 465867686002588326876247654899618987454077778999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.60 E-value=0.56 Score=20.42 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999879999489999998347
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
-||.++|.+|+|||||++.+..-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.54 E-value=0.86 Score=18.96 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999948999999834798
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTP 1244 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~ 1244 (1428)
||.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.46 E-value=0.63 Score=20.01 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999489999998347
Q 000553 1221 QVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
||.++|..|+|||||++.+..-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.34 E-value=0.57 Score=20.35 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
||.|+|..|+|||||++.+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.30 E-value=0.62 Score=20.04 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999879999489999998347
Q 000553 1220 TQVGIVGRTGAGKSSILNALFRL 1242 (1428)
Q Consensus 1220 ekvgIvGrTGSGKSTLl~~L~rl 1242 (1428)
=|+.++|..|+|||||++.+..-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.27 E-value=0.55 Score=20.45 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689983789999987375
Q 000553 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~alLGe~ 661 (1428)
-++++|..|+|||||+..+.+.-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.24 E-value=0.58 Score=20.27 Aligned_cols=21 Identities=19% Similarity=0.610 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999948999999834
Q 000553 1221 QVGIVGRTGAGKSSILNALFR 1241 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~r 1241 (1428)
|+.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.15 E-value=0.68 Score=19.75 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999968998378999998
Q 000553 639 LVAVIGEVGSGKSSLLNSI 657 (1428)
Q Consensus 639 l~~IvG~vGsGKStLL~al 657 (1428)
-++++|..|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.07 E-value=0.62 Score=20.05 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994899999983479
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLT 1243 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~ 1243 (1428)
+|-|.|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=80.03 E-value=0.57 Score=20.35 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=53.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99998799994899999983479899846999996179999376723508980776556775788328699999378999
Q 000553 1221 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1300 (1428)
Q Consensus 1221 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ei~~ 1300 (1428)
+|.|+|+.||||||+...|..-+.. ..|+.-| -+|.... ...-..-.+++.++-+....|+.+..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~----~~i~~~~-------llr~~~~----~~~~~~~~i~~~~~~g~~~~d~~v~~ 66 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI----PQISTGD-------MLRAAVK----SGSELGKQAKDIMDAGKLVTDELVIA 66 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC----CEEEHHH-------HHHHHHH----HTCTTTGGGHHHHHHTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC----CEECHHH-------HHHHHHC----CCCHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 8999879999989999999998699----5551014-------7677550----39858999999997699871163999
Q ss_pred HHHHCCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99980299999968-993153059999992499999999987269978998465
Q 000553 1301 VLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353 (1428)
Q Consensus 1301 aL~~~~L~~~i~~l-gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEa 1353 (1428)
.+... .... .-+..+-++ ..-+ ..|.-++.....+...++.||=+
T Consensus 67 ~~~~~-----~~~~~~~~g~i~~g-~pr~--~~~~~~~~~~~~~~~~vi~L~~~ 112 (179)
T d1e4va1 67 LVKER-----IAQEDCRNGFLLDG-FPRT--IPQADAMKEAGINVDYVLEFDVP 112 (179)
T ss_dssp HHHHH-----HTSGGGGGCEEEES-CCCS--HHHHHHHHHTTCCCSEEEEEECC
T ss_pred HHHHH-----HCCCCCCCCEEECC-CCCC--HHHHHHHHHCCCCCEEEEEECCC
T ss_conf 99985-----22521016634224-4530--57765544406870399984462
|