Citrus Sinensis ID: 000555
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1427 | 2.2.26 [Sep-21-2011] | |||||||
| Q7PC88 | 1426 | ABC transporter G family | yes | no | 0.992 | 0.993 | 0.749 | 0.0 | |
| Q8S628 | 1441 | Pleiotropic drug resistan | yes | no | 0.992 | 0.983 | 0.659 | 0.0 | |
| Q7PC86 | 1442 | ABC transporter G family | no | no | 0.978 | 0.968 | 0.559 | 0.0 | |
| Q9XIE2 | 1469 | ABC transporter G family | no | no | 0.978 | 0.950 | 0.554 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | no | no | 0.978 | 0.981 | 0.553 | 0.0 | |
| Q94A18 | 1416 | ABC transporter G family | no | no | 0.975 | 0.983 | 0.558 | 0.0 | |
| Q5Z9S8 | 1500 | Pleiotropic drug resistan | yes | no | 0.976 | 0.929 | 0.542 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | yes | no | 0.983 | 0.967 | 0.541 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.976 | 0.972 | 0.542 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.980 | 0.960 | 0.544 | 0.0 |
| >sp|Q7PC88|AB31G_ARATH ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2280 bits (5909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1074/1433 (74%), Positives = 1239/1433 (86%), Gaps = 16/1433 (1%)
Query: 2 AASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNF-ALLK-- 58
AASNGSEYFE +++ T RESF R SNAE++E+DE++L WAAI RLPSQ+QG A+L+
Sbjct: 3 AASNGSEYFEFDVE-TGRESFARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRS 61
Query: 59 TTTPRNGGEAK---TETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIE 115
T + G A +TIDV+KL+R+ RE++V +ALAT+DQDN+KLLSAIKERLDRVG+E
Sbjct: 62 QTQTQTSGYADGNVVQTIDVKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGME 121
Query: 116 VPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSG 175
VPK+EVRF+NL + ADVQ G+RALPTLVN +RD FER L+ LRI KP++H L IL D+SG
Sbjct: 122 VPKIEVRFENLNIEADVQAGTRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISG 181
Query: 176 VVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQ 235
++KPGRMTLLLGPP SGKSTLLLALAGKLD SLKK+GNITYNG L++FHV+RTSAYISQ
Sbjct: 182 IIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQ 241
Query: 236 TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGG 295
TDNHI ELTVRET DFAAR QGA+EGFA Y+ DL RLEKER IRPS EIDAFMKA+SV G
Sbjct: 242 TDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKG 301
Query: 296 KKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 355
+KHSVSTDYVLKVLGLD+CS+T+VGNDM+RGVSGGQ+KRVTTGEM VGPRKTLFMDEIST
Sbjct: 302 EKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEIST 361
Query: 356 GLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEV 415
GLDSSTTFQIVKC+RNFVH MDAT+LMALLQP PETFDLFDDL+LLSEG++VYQGPR +V
Sbjct: 362 GLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDV 421
Query: 416 LEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGK 475
+ FFESLGF+LPPRKGVADFLQEVTSKKDQAQYWADPSKPY F+PVS+IA AF++S++G
Sbjct: 422 IAFFESLGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGH 481
Query: 476 ALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAF 535
A S L+ P+DK PSAL +T++A+S WE + CF RE+LLI+RH FLY FRTCQV F
Sbjct: 482 AADSKLAAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGF 541
Query: 536 VGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDN 595
VG V T+FL+TRLHPT E+ GN YLSCLFF +VHMMFNGFSELP+MI+RLPVFYKQRDN
Sbjct: 542 VGLVTATVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDN 601
Query: 596 YFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALG 655
FHPAW+WS+ASW+LRVPYSVLEAVVWS VVYFTVG AP GRFFR+M LLFS+HQMALG
Sbjct: 602 SFHPAWSWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALG 661
Query: 656 LFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAIS 715
LFRMMAS+ARDMV+ANTF S+++LIVFL+GGF+IPK IKPWW W +WVSPLSY Q AI+
Sbjct: 662 LFRMMASLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIA 721
Query: 716 VNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALA 775
VNEF A RW S I D TIG N+L S P+ DYWYWIG+ L+ Y++LFN+VVTLALA
Sbjct: 722 VNEFTATRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALA 781
Query: 776 YLNPLRKSQ-VVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNY 834
YLNPLRK++ VV+DD E + +A I+ +KKGMILPF+PL MTFHNVNY
Sbjct: 782 YLNPLRKARAVVLDDPNEETALVADANQVIS--------EKKGMILPFKPLTMTFHNVNY 833
Query: 835 YVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 894
YVDMP+ MRSQG+PE +LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY
Sbjct: 834 YVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYT 893
Query: 895 EGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFV 954
EGDI+ISG+PKEQ TFARISGYVEQNDIHSPQVTVEESLWFSA+LRL KE++K Q+ EFV
Sbjct: 894 EGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFV 953
Query: 955 EEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
E+VMRLVELD+LR ALVG PG++GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 954 EQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1013
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDY 1074
AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG+VIYGGKLG HS+ ++DY
Sbjct: 1014 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDY 1073
Query: 1075 FQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPP 1134
FQ ++G+P I SGYNPATWMLEVTT A EEK ++FAD+Y+ S+Q+R VE++IK LSVPP
Sbjct: 1074 FQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPP 1133
Query: 1135 PGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIG 1194
GSEP+ F+S YSQ+ LSQF +C WKQNL+YWRSP+YN VRL FT AA ILG+VFWDIG
Sbjct: 1134 EGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIG 1193
Query: 1195 SKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQ 1254
SKR+S+Q L VMGALY++CLFLGV+NASSVQPIVSIERTVFYREKAAGMY+PIPYA AQ
Sbjct: 1194 SKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQ 1253
Query: 1255 GLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQ 1314
GLVE+PY+ QTI++G IT+F I FERT KF L+LVFMFLTF+YFTFYGMMAVGLTPNQ
Sbjct: 1254 GLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQ 1313
Query: 1315 HLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV 1374
HLAAVISSAFYSLWNL SGFL+ +P IP WWIWFYYI PVAWTL+G++ SQLGDVE+MI
Sbjct: 1314 HLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMIN 1373
Query: 1375 EPTFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
EP F GTVKE++E G+ P M+GVSAAVLV F LFF +FA SVK+LNFQ+R
Sbjct: 1374 EPLFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
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May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S628|PDR13_ORYSJ Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1974 bits (5113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 956/1449 (65%), Positives = 1159/1449 (79%), Gaps = 32/1449 (2%)
Query: 1 MAASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALL--- 57
MA + G V +D E R + AE E +L+WAA RLPS K+ + A++
Sbjct: 1 MAFAAGGIDHHVAVDVEGEEESRRRAVAE-----EADLLWAAFERLPSAKRRSHAVVLPD 55
Query: 58 --KTTTPRNGGEAKTETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIE 115
GG + + +DVRKL+R + V+ ALAT++ DN LL IK R D VG+E
Sbjct: 56 PDGLGGGDGGGRGEGQLVDVRKLDRPGLQRVLRHALATSELDNANLLHGIKARFDAVGLE 115
Query: 116 VPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSG 175
VP+VEVRFQNL V DV G RALPTLVN D+ ERIL + +P +H L IL+DVSG
Sbjct: 116 VPRVEVRFQNLTVSTDVHVGRRALPTLVNYVHDIAERILISSHLLRPDKHKLVILDDVSG 175
Query: 176 VVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQ 235
V+KPGRMTLLLGPPASGKSTLLLALA KLDS LKKSG + YNG LD+F VQRTSAYISQ
Sbjct: 176 VIKPGRMTLLLGPPASGKSTLLLALADKLDSQLKKSGEVAYNGMALDQFCVQRTSAYISQ 235
Query: 236 TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGG 295
TDNHI ELTVRET DFAA+ QGA+E + + +L LEKER IRPSPEIDAFMK +S
Sbjct: 236 TDNHIGELTVRETLDFAAKCQGASENWQECLKELVNLEKERGIRPSPEIDAFMKTASFRR 295
Query: 296 KKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 355
+KH++ +DYVL+VLGLD+C++T VG+DM RGVSGGQKKRVTTGEMI+GPRKTL MDEIST
Sbjct: 296 EKHNLVSDYVLRVLGLDICADTPVGSDMERGVSGGQKKRVTTGEMIIGPRKTLLMDEIST 355
Query: 356 GLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEV 415
GLDSSTTFQIV C+RNFVH+M+AT+LM+LLQP PETF+LFDDL+LLSEG ++YQGP V
Sbjct: 356 GLDSSTTFQIVNCMRNFVHEMEATVLMSLLQPAPETFELFDDLILLSEGKIIYQGPIKHV 415
Query: 416 LEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGK 475
+++F+SLGF LPPRKG+ADFLQEVTSKKDQAQYW+D SK ++F+ SE+A FK+S++G
Sbjct: 416 VDYFKSLGFSLPPRKGIADFLQEVTSKKDQAQYWSDQSKQHIFVSASEMAAVFKESQYGT 475
Query: 476 ALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAF 535
L+++LS +K L ++++AV K+ L R CFARE++LI R+ FLY FRTCQVAF
Sbjct: 476 YLEANLSSSCG-NKDSALVLPRSKFAVPKFSLVRACFARELILISRNRFLYTFRTCQVAF 534
Query: 536 VGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDN 595
VG + T+FLRTRLHP DE+NGNLYL+CLFF +VHMMFNGF+E+ + I+RLPVFYKQRDN
Sbjct: 535 VGIITSTLFLRTRLHPVDEQNGNLYLACLFFGLVHMMFNGFTEMTMTISRLPVFYKQRDN 594
Query: 596 YFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALG 655
+FHPAWA+S+ +WILR+PYS +EAVVWSCVVY+TVGFAP RFFR M LLFS+HQMALG
Sbjct: 595 FFHPAWAFSLPNWILRIPYSFIEAVVWSCVVYYTVGFAPTVDRFFRFMLLLFSIHQMALG 654
Query: 656 LFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAIS 715
LFRMM +IARDM +A+TF S+ LL +FL+GGF++PK IKPWW WAYW+SPL YAQ A+S
Sbjct: 655 LFRMMGAIARDMTIASTFGSAVLLAIFLLGGFVVPKGFIKPWWDWAYWISPLMYAQRAVS 714
Query: 716 VNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALA 775
VNEF+A+RW K SV G+ T+G N+L +HSLP+ D+W+WIGVG LL YS+ FN + TLALA
Sbjct: 715 VNEFSASRWSKVSVSGNMTVGTNILISHSLPTDDHWFWIGVGVLLAYSIFFNIMFTLALA 774
Query: 776 YLNPLRKSQVVI-------------DDKEENSVKMAKQQFEINT--TSAPESGKKKGMIL 820
+LNPLRK Q ++ D +N++ + FE N E KKGMIL
Sbjct: 775 FLNPLRKPQSMVPSDAGDGRDVHINTDSNKNTIG---EIFENNDGFEGQTECKSKKGMIL 831
Query: 821 PFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTT 880
PFQPL MTFHNVNYYV+MP+ M+++G+PEK+LQLLS VSG+F P VLTALVG+SG+GKTT
Sbjct: 832 PFQPLTMTFHNVNYYVNMPKEMQAKGVPEKRLQLLSEVSGIFRPRVLTALVGASGSGKTT 891
Query: 881 LMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLR 940
LMDVLAGRKTGGYIEGDI+ISG+ KEQ TFARI+GYVEQNDIHSPQVTVEESLWFS+ LR
Sbjct: 892 LMDVLAGRKTGGYIEGDIRISGHKKEQRTFARIAGYVEQNDIHSPQVTVEESLWFSSTLR 951
Query: 941 LSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSII 1000
L ++S+ RH FVEEVM LVELD +R ALVG G +GLSTEQRKRLTIAVELVANPSII
Sbjct: 952 LPNDISRETRHAFVEEVMALVELDQIRYALVGKQGLTGLSTEQRKRLTIAVELVANPSII 1011
Query: 1001 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060
FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY
Sbjct: 1012 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1071
Query: 1061 GGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQY 1120
GG LGV+S MI+YFQ + + I GYNPATWMLEVTT A+EE+LG+DFA VY++S Q+
Sbjct: 1072 GGSLGVNSVDMINYFQGIPRVVPITEGYNPATWMLEVTTQASEERLGIDFATVYKNSYQF 1131
Query: 1121 RVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTV 1180
R VE+ I LS+P G+EPLKFSS +SQ+ L+QF +C KQ+L+YWRSP+YN VRL FT
Sbjct: 1132 RNVENLIVELSIPASGTEPLKFSSEFSQNRLTQFMVCLRKQSLVYWRSPEYNVVRLFFTS 1191
Query: 1181 AAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREK 1240
AA+I GS+FW++G KR ST+ + ++MGALYA+CLFLGVNNASSVQP+VS+ERTV+YRE+
Sbjct: 1192 VAAIIFGSIFWNVGMKRESTEDILLLMGALYAACLFLGVNNASSVQPVVSVERTVYYRER 1251
Query: 1241 AAGMYSPIPYAVAQ---GLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTF 1297
AA MYS PYA AQ GLVE+PY+ VQT+IFG IT+FM+N+ER RK L+L++MFLTF
Sbjct: 1252 AANMYSSFPYAAAQVYHGLVEIPYIAVQTLIFGLITYFMVNYERNIRKLVLYLIYMFLTF 1311
Query: 1298 SYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWT 1357
+YFTFYGM+AVGLTP QH+A+V+SSAFYSLWNL SGFLIP+ IPGWWIWFYYI PVAWT
Sbjct: 1312 TYFTFYGMVAVGLTPTQHMASVVSSAFYSLWNLLSGFLIPQSRIPGWWIWFYYICPVAWT 1371
Query: 1358 LRGIVSSQLGDVETMIVEPTFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAF 1417
LRG+++SQLGDV+T IV P F GTV E+L+++LGF GM G + AVLVAFS+ FF +A
Sbjct: 1372 LRGVITSQLGDVDTRIVGPGFDGTVHEFLQQNLGFEQGMTGATVAVLVAFSVFFFSIYAI 1431
Query: 1418 SVKFLNFQK 1426
S+K +NFQ+
Sbjct: 1432 SIKMINFQR 1440
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC86|AB35G_ARATH ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1622 bits (4200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 792/1416 (55%), Positives = 1038/1416 (73%), Gaps = 20/1416 (1%)
Query: 23 TRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRN--GGEAKTETIDVRKLNR 80
T + +S+ EDE+ L WA+I +LP+ + +L+ + G + + +DV KL+
Sbjct: 36 TSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDVTKLDG 95
Query: 81 SRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRALP 140
R+ + +QDN ++L+ ++ R+DRVGI++P VEVR+ +L V AD TG R+LP
Sbjct: 96 EERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSLP 155
Query: 141 TLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLAL 200
+L+NA R++ E L + I K+ LTIL DVSG+VKP RMTLLLGPP+SGK+TLLLAL
Sbjct: 156 SLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLAL 215
Query: 201 AGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANE 260
AGKLD SL SG +TYNGY+L+EF +TSAYISQ D H+ +TV+ET DF+AR QG
Sbjct: 216 AGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGT 275
Query: 261 GFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320
+ +N+L R EK+ I P ++D FMKAS+ G K S+ TDY LK+LGLD+C +T+VG
Sbjct: 276 RYD-LLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVG 334
Query: 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATI 380
+DM+RG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSSTTFQIVKCL+ VH +AT+
Sbjct: 335 DDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATV 394
Query: 381 LMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVT 440
L++LLQP PETFDLFDD++LLSEG +VYQGPR +LEFFES GF+ P RKG ADFLQEVT
Sbjct: 395 LISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVT 454
Query: 441 SKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRY 500
SKKDQ QYW DP++PY ++PVSE A +FK G L + LSVPYDKSK H +AL +Y
Sbjct: 455 SKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKY 514
Query: 501 AVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLY 560
++ K EL ++C+ +E +L++R+SF Y+F+T Q+ + + T++LRT +H +E + N+Y
Sbjct: 515 SIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIY 574
Query: 561 LSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAV 620
+ L FA++ MFNG +E+ + I RLPVFYKQRD FHP W +++ +++L +P S+ E+
Sbjct: 575 VGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFEST 634
Query: 621 VWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLI 680
W V Y+++G+AP+ RFF+ ++F + QMA G+FR +AS R M +ANT LL+
Sbjct: 635 AWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLV 694
Query: 681 VFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNT--IGYN 738
VFL GGF++P+ I WW WAYW+SPLSYA +AI+VNE A RW K + G++T +G +
Sbjct: 695 VFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNK-MSGNSTTRLGTS 753
Query: 739 VLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKM- 797
VL+ + WYWIGVG LL ++++FN TLAL YL+PL K+Q ++ +E+ K
Sbjct: 754 VLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEEDEEAKGK 813
Query: 798 --AKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLL 855
+ ++ E+ + SA KKGM+LPF PLAM+F +V Y+VDMP MR QG+ E +LQLL
Sbjct: 814 AGSNKETEMESVSA-----KKGMVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRLQLL 868
Query: 856 SNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISG 915
V+ F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYIEGD+++SG+PK+Q TFARISG
Sbjct: 869 KGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISG 928
Query: 916 YVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG 975
Y EQ DIHSPQVTV ESL FSA LRL+KEVSK + FV++VM LVEL LRDA+VG PG
Sbjct: 929 YCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPG 988
Query: 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035
+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTI
Sbjct: 989 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTI 1048
Query: 1036 HQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWML 1095
HQPSIDIFEAFDELLLMKRGG VIY G LG +S +++YF++ G+P IP YNPATWML
Sbjct: 1049 HQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWML 1108
Query: 1096 EVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFF 1155
E ++ A E KLGVDFA++Y++S + ++ ++ LSVPP G+ L F++ +SQ+ QF
Sbjct: 1109 EASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFK 1168
Query: 1156 ICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCL 1215
C WKQ YWRSP YN VR FT+A +L++GSVFW IG KRS+ Q L MV+GA+YA+ +
Sbjct: 1169 SCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYAAVV 1228
Query: 1216 FLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFF 1275
F+G+NN S+VQP+V++ERTVFYREKAAGMYS IPYA++Q E+PYV +QT + I +
Sbjct: 1229 FVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLIIYS 1288
Query: 1276 MINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFL 1335
M+ FE A KF F+ + +F Y+T+YGMM V LTPNQ +A++ +SAFY ++NL SGF
Sbjct: 1289 MVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFF 1348
Query: 1336 IPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV----EPTFRGTVKEYLEESLG 1391
IPRP IP WW+W+Y+I PVAWT+ G+++SQ GDVET I P TVK+Y+++ G
Sbjct: 1349 IPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGL--TVKQYIKDQYG 1406
Query: 1392 FGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
F +G A VLV F++ F FAF +K LNFQ R
Sbjct: 1407 FESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIE2|AB36G_ARATH ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1616 bits (4185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 793/1429 (55%), Positives = 1043/1429 (72%), Gaps = 33/1429 (2%)
Query: 29 ESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRN--GGEAKTETIDVRKLNRSRRELV 86
+S+ +DE+ L WAAI +LP+ + L+ + G + ++ +DV KL+ R+
Sbjct: 44 QSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKLDGEDRQKF 103
Query: 87 VSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRALPTLVNAT 146
+ +QDN ++L+ ++ R+DRVGI++P VEVR+++L + AD TG+R+LPTL+N
Sbjct: 104 IDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTGNRSLPTLLNVV 163
Query: 147 RDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDS 206
R++ E L + I K+ LTIL D+SGV+KPGRMTLLLGPP+SGK+TLLLALAGKLD
Sbjct: 164 RNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLLALAGKLDK 223
Query: 207 SLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYI 266
SL+ SG+ITYNGY+LDEF ++TSAYISQ D H+ +TV+ET DF+AR QG + +
Sbjct: 224 SLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYD-LL 282
Query: 267 NDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG 326
N+L R EK+ I P ++D FMKAS+ G K+S+ TDY LK+LGLD+C +T+VG+DM+RG
Sbjct: 283 NELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIVGDDMMRG 342
Query: 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQ 386
+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSSTTFQIVKCL+ VH +AT+LM+LLQ
Sbjct: 343 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEATVLMSLLQ 402
Query: 387 PPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQA 446
P PETFDLFDD++L+SEG +VYQGPR +LEFFES GF+ P RKG ADFLQEVTSKKDQ
Sbjct: 403 PAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEVTSKKDQE 462
Query: 447 QYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWE 506
QYW +P++PY ++PVSE A +K G + + L+VP+DKS+ H +AL +Y+VSK E
Sbjct: 463 QYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDKYSVSKRE 522
Query: 507 LFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFF 566
L ++C+ +E LL+QR++F Y+F+T Q+ + + T+FLRT ++ +E + NLY+ L F
Sbjct: 523 LLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANLYIGALLF 582
Query: 567 AVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVV 626
++ MFNGF+E+ +M++RLPVFYKQRD F+P+W +S+ +++L +P S+LE+ W V
Sbjct: 583 GMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILESTAWMVVT 642
Query: 627 YFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGG 686
Y+++GFAP+ RFF+ L+F + QMA LFR++AS+ R M++ANT + +LL+VFL+GG
Sbjct: 643 YYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLLLVFLLGG 702
Query: 687 FIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTI--GYNVLHTHS 744
F++PK I WW WAYWVSPL+YA + + VNE A RW K ++TI G VL+T
Sbjct: 703 FLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGTMVLNTWD 762
Query: 745 LPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPL----------------------RK 782
+ WYWI VGALL ++ LFN + TLAL YLNPL R+
Sbjct: 763 VYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDADQGKDPMRR 822
Query: 783 SQVVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAM 842
S D V M + + ++ +G KKGM+LPF PLAM+F +V Y+VDMP M
Sbjct: 823 SLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFDDVKYFVDMPGEM 882
Query: 843 RSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG 902
R QG+ E +LQLL V+G F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYIEGD++ISG
Sbjct: 883 RDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISG 942
Query: 903 YPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE 962
+PK Q TFARISGY EQ DIHSPQVTV ESL FSA LRL KEV K+++ FV++VM LVE
Sbjct: 943 FPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVE 1002
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
LDSLRD++VG PG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VR
Sbjct: 1003 LDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 1062
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIP 1082
NTVDTGRTVVCTIHQPSIDIFEAFDEL+LMKRGG+VIY G LG +S +++YF++ G+
Sbjct: 1063 NTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVS 1122
Query: 1083 SIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKF 1142
IP YNPATWMLE ++ A E KL VDFA++Y S ++ ++ +K LSVPP G+ L F
Sbjct: 1123 KIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPPAGASDLYF 1182
Query: 1143 SSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQG 1202
++ +SQ+ QF C WKQ YWRSP YN VR FT+A +L++G+VFW IG RS+
Sbjct: 1183 ATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQIGGNRSNAGD 1242
Query: 1203 LFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYV 1262
L MV+GALYA+ +F+G+NN S+VQP+V++ERTVFYRE+AAGMYS +PYA++Q E+PYV
Sbjct: 1243 LTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPYAISQVTCELPYV 1302
Query: 1263 FVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISS 1322
+QT+ + I + M+ FE A KFF F+ + +F Y+T+YGMM V LTPNQ +A++ +S
Sbjct: 1303 LIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQQVASIFAS 1362
Query: 1323 AFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV----EPTF 1378
AFY ++NL SGF IPRP IP WWIW+Y+I PVAWT+ G++ SQ GDVET I P
Sbjct: 1363 AFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDL 1422
Query: 1379 RGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
TVK+Y+E+ GF +G AAVL+AF++ F FAF ++ LNFQ R
Sbjct: 1423 --TVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
Key factor that controls the extent of cell death in the defense response. Neccessary for both callose deposition and glucosinolate activation in response to pathogens. Required for limiting invasion by nonadapted powdery mildews. Confers resistance to cadmium (Cd) and lead (Pb), probably as an efflux pump of Cd2+ or Cd conjugates, and possibly, of chemicals that mediate pathogen resistance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1612 bits (4175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 782/1414 (55%), Positives = 1021/1414 (72%), Gaps = 17/1414 (1%)
Query: 17 TARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVR 76
+ RE F+R+S E +DE+ L WAA+ +LP+ + +L T GG ID++
Sbjct: 24 SGREIFSRSSREE---DDEEALRWAALEKLPTFDRLRKGIL--TASHAGG--PINEIDIQ 76
Query: 77 KLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGS 136
KL + ++ + + D ++ KLL +K+R+DRVGI++P +EVRF +LKV A+V G
Sbjct: 77 KLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGG 136
Query: 137 RALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTL 196
RALPT VN + ++ L L + ++ TILNDVSG+VKPGRM LLLGPP+SGK+TL
Sbjct: 137 RALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTL 196
Query: 197 LLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQ 256
LLALAGKLD LK++G +TYNG+ ++EF QRT+AYI Q D HI E+TVRETF +AAR+Q
Sbjct: 197 LLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQ 256
Query: 257 GANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316
G + + +L R EKE NI+P P+ID FMKA S G+K +V TDY+LK+LGL++C++
Sbjct: 257 GVGSRYDM-LTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCAD 315
Query: 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQM 376
T+VG+DM+RG+SGGQKKRVTTGEM+VGP + LFMDEISTGLDSSTT+QIV LRN+VH
Sbjct: 316 TMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIF 375
Query: 377 DATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFL 436
+ T L++LLQP PETF+LFDD++L++EG ++Y+GPR V+EFFE++GF+ PPRKGVADFL
Sbjct: 376 NGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFL 435
Query: 437 QEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALS 496
QEVTSKKDQ QYWA +PY F+ V E A+AF+ G+ + L++P+DK+K HP+AL+
Sbjct: 436 QEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALT 495
Query: 497 KTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKN 556
+Y V EL +T F+RE LL++R+SF+Y F+ Q+ + F+ T+F RT + E +
Sbjct: 496 TKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVD 555
Query: 557 GNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSV 616
G+LY LFF ++ +MFNG SEL + I +LPVFYKQRD F+PAW +S+ W+L++P S
Sbjct: 556 GSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISF 615
Query: 617 LEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASS 676
+EA + + + Y+ +GF P GR F+ LL ++QMA LF+M+A++ R+M+VANTF +
Sbjct: 616 MEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAF 675
Query: 677 SLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIG 736
++L+ F +GG ++ ++ IK WW W YW+SP+ Y Q+AI NEF W + T+G
Sbjct: 676 AMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLG 735
Query: 737 YNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDK---EEN 793
L + YWYWIG GALL + +LFN TLAL +LN L K Q VI ++ +E
Sbjct: 736 VTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDET 795
Query: 794 SVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQ 853
++ A+ + + + KK+GM+LPF+P ++TF NV Y VDMPQ M QG E +L
Sbjct: 796 ELQSARSEGVVEAGA----NKKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLV 851
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
LL V+G F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYI+G+I ISGYPK Q TFARI
Sbjct: 852 LLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARI 911
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
SGY EQ DIHSP VTV ESL +SA LRL KEV KN+R F+EEVM LVEL LR ALVG
Sbjct: 912 SGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGL 971
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
PG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC
Sbjct: 972 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1031
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATW 1093
TIHQPSIDIFEAFDEL L+KRGG IY G LG S +I+YF+++ GI I GYNPATW
Sbjct: 1032 TIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATW 1091
Query: 1094 MLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQ 1153
MLEV+T + E LGVDFA VY++SE Y+ + IK LS P PGS+ L F + YSQ L+Q
Sbjct: 1092 MLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQ 1151
Query: 1154 FFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYAS 1213
WKQ+ YWR+P Y AVR FT+ AL+ G++FWD+G K + Q L MG++Y +
Sbjct: 1152 CMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTA 1211
Query: 1214 CLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFIT 1273
LFLG+ NA+SVQP+V++ERTVFYRE+AAGMYS +PYA AQ +E+PYV VQ I++G I
Sbjct: 1212 VLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIV 1271
Query: 1274 FFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSG 1333
+ MI FE TA KFF +L FM+ +F FTFYGMMAV +TPN H+A+V+SSAFY +WNL SG
Sbjct: 1272 YAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSG 1331
Query: 1334 FLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTFRGTVKEYLEESLGFG 1393
FLIPRPS+P WW W+Y++ PVAWTL G+++SQ GD+ + + +VK+++ E G+
Sbjct: 1332 FLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNM--SVKQFIREFYGYR 1389
Query: 1394 PGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
G +GV AA+ V F LLF FA +K NFQKR
Sbjct: 1390 EGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94A18|AB29G_ARATH ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1610 bits (4169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 790/1415 (55%), Positives = 1028/1415 (72%), Gaps = 23/1415 (1%)
Query: 18 ARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVRK 77
+ F+R S + + DE+ L WAA+ +LP+ FA L+TT + +DV K
Sbjct: 20 SNNHFSRRSGSTIDDHDEEALKWAALEKLPT-----FARLRTTII----HPHEDLVDVTK 70
Query: 78 LNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSR 137
L R+ + ++DN K L + R+DRV I++P VEVRF+ + + A+ G R
Sbjct: 71 LGVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKR 130
Query: 138 ALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLL 197
ALPTL NA ++ ER L L K +TIL DVSG++KP RMTLLLGPP+SGK+TLL
Sbjct: 131 ALPTLPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLL 190
Query: 198 LALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQG 257
LALAGKLD SLK +G +TYNG+ L+EF Q+TSAYISQ D H+ +TV+ET DF+AR QG
Sbjct: 191 LALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQG 250
Query: 258 ANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSET 317
+ +++L R EK+ I P PE+D FMK+ + G K S+ TDY L++LGLD+C +T
Sbjct: 251 VGTRYD-LLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDT 309
Query: 318 VVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMD 377
VVG++MIRG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSSTT+QIVKCL+ V D
Sbjct: 310 VVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTD 369
Query: 378 ATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQ 437
AT+LM+LLQP PETF+LFDD++LLSEG +VYQGPR VL FFE+ GF+ P RKG ADFLQ
Sbjct: 370 ATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQ 429
Query: 438 EVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSK 497
EVTS+KDQ QYWAD KPY ++ VSE +K F+ G L+ LSVPYD+ K HP++L
Sbjct: 430 EVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVF 489
Query: 498 TRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNG 557
+++V K +LF+ C+ RE+LL++R++F YI +T Q+ + +A T++LRT + +E +G
Sbjct: 490 KKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDG 549
Query: 558 NLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVL 617
+Y+ L F+++ MFNGF+EL +MI RLPVFYKQRD FHP W +S+ +++L +P S+
Sbjct: 550 AVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIF 609
Query: 618 EAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSS 677
E+VVW + Y+ +GFAPE RF +H+ ++F QMA G+FR +A+ R M++ANT +
Sbjct: 610 ESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALV 669
Query: 678 LLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARW-KKKSVIGDNTIG 736
+L++FL+GGFI+P+ I WW WAYWVSP++Y A++VNE A RW + S ++G
Sbjct: 670 ILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPSSDNSTSLG 729
Query: 737 YNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVI--DDKEENS 794
VL + + WYWIGVG +L +++LFN +VTLAL +LNPL K Q V+ ++ EEN
Sbjct: 730 LAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEENR 789
Query: 795 VKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQL 854
+ + I+ K+GM+LPF PL M+F NVNYYVDMP+ M+ QG+ + KLQL
Sbjct: 790 AENGSKSKSIDV--------KRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQL 841
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L V+GVF PGVLTAL+G SGAGKTTLMDVLAGRKTGGYIEGDI+ISG+PK Q TFARIS
Sbjct: 842 LKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARIS 901
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFP 974
GY EQNDIHSPQVTV+ESL +SA LRL KEV+K ++ FV+EVM LVEL+SL+DA+VG P
Sbjct: 902 GYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLP 961
Query: 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1034
G +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT
Sbjct: 962 GITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1021
Query: 1035 IHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWM 1094
IHQPSIDIFEAFDELLL+KRGG+VIY G LG +S +I+YFQA+ G+P I YNPATWM
Sbjct: 1022 IHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWM 1081
Query: 1095 LEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQF 1154
LEV++ A E KL +DFA+ Y++S Y+ ++ +K LS PP G+ L FS+ +SQ L QF
Sbjct: 1082 LEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQF 1141
Query: 1155 FICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASC 1214
C WKQ + YWR+P YN R FT+AAA++LGS+FW +G+KR + L V+GA+YA+
Sbjct: 1142 KSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAV 1201
Query: 1215 LFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITF 1274
LF+GVNN+SSVQP++++ER+VFYRE+AA MYS +PYA+AQ + E+PYV +QT + I +
Sbjct: 1202 LFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIY 1261
Query: 1275 FMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGF 1334
M+ FE T KFF F F++F YFT+YGMM V LTPNQ +AAV + AFY L+NL SGF
Sbjct: 1262 AMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGF 1321
Query: 1335 LIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTFRG--TVKEYLEESLGF 1392
+IPRP IP WWIW+Y+I PVAWT+ G++ SQ GDVE I P T+K Y+E G+
Sbjct: 1322 VIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGY 1381
Query: 1393 GPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
+ A VLV F+L F FAF ++ LNFQ+R
Sbjct: 1382 DADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5Z9S8|PDR12_ORYSJ Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1600 bits (4143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 786/1449 (54%), Positives = 1038/1449 (71%), Gaps = 55/1449 (3%)
Query: 32 EEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGG------EAKTETIDVRKLNRSRREL 85
++DE+ L WAAI RLP+ + A+L + + + + +DVR+L R+
Sbjct: 54 DDDEEALRWAAIERLPTYSRMRTAILSSAEEEAAAAAAGAGKQQYKEVDVRRLGVGERQE 113
Query: 86 VVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRALPTLVNA 145
+ + ++DN + L ++ R+DRVGIE+P VEVRF+ L V A GSRALPTL+N
Sbjct: 114 FIERVFRVAEEDNQRFLQKLRNRIDRVGIELPTVEVRFEELMVQARCHVGSRALPTLLNT 173
Query: 146 TRDVFERILTGLRIFKPKRH-SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKL 204
R++ E L GL +P R +LTIL VSG V+P RMTLLLGPP+SGK+TLLLALAGKL
Sbjct: 174 ARNIAEAAL-GLVGVRPGRQATLTILRGVSGAVRPSRMTLLLGPPSSGKTTLLLALAGKL 232
Query: 205 DSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAA 264
D SL++ G +TYNG++L+EF Q+T+AYISQTD H+ E+TV+ET DF+AR QG +
Sbjct: 233 DPSLRRGGEVTYNGFELEEFVAQKTAAYISQTDVHVGEMTVKETLDFSARCQGVGTKYD- 291
Query: 265 YINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324
+ +L R EKE IRP PE+D FMKA+S+ G + S+ TDY L++LGLD+C++T+VG+ M
Sbjct: 292 LLTELARREKEAGIRPEPEVDLFMKATSMEGVESSLQTDYTLRILGLDICADTIVGDQMQ 351
Query: 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMAL 384
RG+SGGQKKRVTTGEMIVGP K LFMDEISTGLDSSTTFQIVKCL+ VH +ATILM+L
Sbjct: 352 RGISGGQKKRVTTGEMIVGPTKVLFMDEISTGLDSSTTFQIVKCLQQIVHLGEATILMSL 411
Query: 385 LQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKD 444
LQP PETF+LFDD++LLSEG +VYQGPR VLEFFES GF+ P RKG ADFLQEVTSKKD
Sbjct: 412 LQPAPETFELFDDIILLSEGQIVYQGPREYVLEFFESCGFRCPERKGTADFLQEVTSKKD 471
Query: 445 QAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSK 504
Q QYWAD +PY ++ VSE A+ FK G L++ LSVP+DK++ H +AL ++ +VS
Sbjct: 472 QEQYWADKHRPYRYISVSEFAQRFKRFHVGLQLENHLSVPFDKTRSHQAALVFSKQSVST 531
Query: 505 WELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCL 564
EL + FA+E LLI+R+SF+YIF+T Q+ V VA T+FLRT++H + +G +Y+ L
Sbjct: 532 TELLKASFAKEWLLIKRNSFVYIFKTIQLIIVALVASTVFLRTQMHTRNLDDGFVYIGAL 591
Query: 565 FFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSC 624
F+++ MFNGF+EL + ITRLPVF+K RD F+PAW +++ + ILR+P+S++E++VW
Sbjct: 592 LFSLIVNMFNGFAELSLTITRLPVFFKHRDLLFYPAWIFTLPNVILRIPFSIIESIVWVI 651
Query: 625 VVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLM 684
V Y+T+GFAPE RFF+ + L+F + QMA GLFR A + R M++A T + +LLI F++
Sbjct: 652 VTYYTIGFAPEADRFFKQLLLVFLIQQMAGGLFRATAGLCRSMIIAQTGGALALLIFFVL 711
Query: 685 GGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTI----GYNVL 740
GGF++PK I WW W YWVSPL Y +A++VNEF + RW K V+ +N + G ++
Sbjct: 712 GGFLLPKAFIPKWWIWGYWVSPLMYGYNALAVNEFYSPRWMNKFVLDNNGVPKRLGIALM 771
Query: 741 HTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDD---KEENSVKM 797
++ + W+WIG LL +++ FN + TL+L YLNPL K Q VI + KE
Sbjct: 772 EGANIFTDKNWFWIGAAGLLGFTMFFNVLFTLSLVYLNPLGKPQAVISEETAKEAEGNGD 831
Query: 798 AKQQFEINTT---------------------------------SAPESGKKKGMILPFQP 824
A+ +T + E+G ++GM+LPF P
Sbjct: 832 ARHTVRNGSTKSNGGNHKEMREMRLSARLSNSSSNGVSRLMSIGSNEAGPRRGMVLPFTP 891
Query: 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDV 884
L+M+F +VNYYVDMP M+ QG+ + +LQLL +V+G F P VLTAL+G SGAGKTTLMDV
Sbjct: 892 LSMSFDDVNYYVDMPAEMKQQGVVDDRLQLLRDVTGSFRPAVLTALMGVSGAGKTTLMDV 951
Query: 885 LAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRL--- 941
LAGRKTGGYIEGD++ISGYPK Q TFARISGY EQNDIHSPQVTV ESL +SA LRL
Sbjct: 952 LAGRKTGGYIEGDMRISGYPKNQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPEK 1011
Query: 942 --SKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSI 999
+E++ + + +FV+EVM LVELD+L+DALVG PG +GLSTEQRKRLTIAVELVANPSI
Sbjct: 1012 IGDQEITDDIKIQFVDEVMELVELDNLKDALVGLPGITGLSTEQRKRLTIAVELVANPSI 1071
Query: 1000 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG+VI
Sbjct: 1072 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 1131
Query: 1060 YGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQ 1119
Y G+LG +S+ MI+YF+A+ G+P I YNPATWMLEV++ A E +L +DFA+ Y++S+
Sbjct: 1132 YSGQLGRNSQKMIEYFEAIPGVPKIKDKYNPATWMLEVSSVAAEVRLNMDFAEYYKTSDL 1191
Query: 1120 YRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFT 1179
Y+ + + LS P PG+ L F + YSQ + QF C WKQ L YWRSP YN VR +FT
Sbjct: 1192 YKQNKVLVNQLSQPEPGTSDLHFPTKYSQSTIGQFRACLWKQWLTYWRSPDYNLVRFSFT 1251
Query: 1180 VAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYRE 1239
+ AL+LG++FW IG+K + L MV+GA+Y + +F+G+NN ++VQPIVSIERTVFYRE
Sbjct: 1252 LFTALLLGTIFWKIGTKMGNANSLRMVIGAMYTAVMFIGINNCATVQPIVSIERTVFYRE 1311
Query: 1240 KAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSY 1299
+AAGMYS +PYA+AQ ++E+PYVFVQT + I + M++F+ TA KFF F + +F Y
Sbjct: 1312 RAAGMYSAMPYAIAQVVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFFWFFFVSYFSFLY 1371
Query: 1300 FTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLR 1359
FT+YGMM V ++PN +AA+ ++AFYSL+NL SGF IPRP IP WWIW+Y++ P+AWT+
Sbjct: 1372 FTYYGMMTVAISPNHEVAAIFAAAFYSLFNLFSGFFIPRPRIPKWWIWYYWLCPLAWTVY 1431
Query: 1360 GIVSSQLGDVETMIVEP-TFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFS 1418
G++ +Q GD+E +I P T+ Y+ G+ + V A VLV F++ F +A
Sbjct: 1432 GLIVTQYGDLEQIISVPGQSNQTISYYVTHHFGYHRKFMPVVAPVLVLFAVFFAFMYAIC 1491
Query: 1419 VKFLNFQKR 1427
+K LNFQ R
Sbjct: 1492 IKKLNFQHR 1500
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1593 bits (4124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1433 (54%), Positives = 1031/1433 (71%), Gaps = 30/1433 (2%)
Query: 20 ESFTRASNA-ESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVRKL 78
+ F+R+S+ + ++DE+ L WAA+ RLP+ + +L ++ G + +DV +L
Sbjct: 23 DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDGGAGGEKVEVDVGRL 82
Query: 79 NRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRA 138
++ + + D D+ + L ++ER+DRVGI+ P +EVRF+NL+V ADV G+R
Sbjct: 83 GARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFENLEVEADVHVGNRG 142
Query: 139 LPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLL 198
LPTL+N+ + E I L I K+ +T+L+DVSG++KP RMTLLLGPP SGK+TLLL
Sbjct: 143 LPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTLLLGPPGSGKTTLLL 202
Query: 199 ALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGA 258
ALAGKLD LK SG +TYNG+ + EF +RT+AYISQ D HI E+TVRET F+AR QG
Sbjct: 203 ALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGV 262
Query: 259 NEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318
+ + +L R EK NI+P +ID +MKAS++GG++ SV TDY+LK+LGLD+C++TV
Sbjct: 263 GTRYEM-LTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYILKILGLDICADTV 321
Query: 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDA 378
VGN+M+RG+SGGQ+KRVTTGEM+VGP + LFMDEISTGLDSSTT+QIV LR +H +
Sbjct: 322 VGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQTIHILGG 381
Query: 379 TILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQE 438
T +++LLQP PET++LFDD++LLS+G +VYQGPR VLEFFE +GF+ P RKGVADFLQE
Sbjct: 382 TAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCPARKGVADFLQE 441
Query: 439 VTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKT 498
VTS+KDQ QYW +PY F+PV + A AF+ G+++++ LS P+D+++ HP+AL+ +
Sbjct: 442 VTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDRTRSHPAALATS 501
Query: 499 RYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGN 558
+Y VS+ EL + RE+LL++R++F+YIF+ + + + T F RT + D G
Sbjct: 502 KYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMR-HDRDYGM 560
Query: 559 LYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLE 618
+YL L+FA+ +MFNGF+EL + + +LPVF+KQRD F PAWA+++ SWIL++P + LE
Sbjct: 561 IYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIPITFLE 620
Query: 619 AVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSL 678
V+ + Y+ +GF P RFF+ LL +L+QM+ LFR +A I RDMVV++TF SL
Sbjct: 621 VGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTFGPLSL 680
Query: 679 LIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDN-TIGY 737
L +GGFI+ + +K WW W YW+SPLSYAQ+AIS NEF W + + G+N T+G
Sbjct: 681 LAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQ-ILPGENVTLGV 739
Query: 738 NVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDD---KEENS 794
+VL + + + WYWIG+GALL Y+LLFN + T+AL+ L+P S + + KE+++
Sbjct: 740 SVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASMSEDALKEKHA 799
Query: 795 ------------VKMAKQQFEIN--------TTSAPESGKKKGMILPFQPLAMTFHNVNY 834
K KQ+ E++ SA S +KGM+LPF PL+++F++V Y
Sbjct: 800 NLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGMVLPFAPLSISFNDVRY 859
Query: 835 YVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 894
VDMP+AM++QGI E +L LL VSG F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYI
Sbjct: 860 SVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 919
Query: 895 EGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFV 954
EGDI+ISGYPK+Q TFARISGY EQNDIHSP VTV ESL FSA LRL EV R F+
Sbjct: 920 EGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEARKMFI 979
Query: 955 EEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
EEVM LVEL SLR ALVG PG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 980 EEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1039
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDY 1074
AIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDEL LMKRGG IY G +G +S +I+Y
Sbjct: 1040 AIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSKLIEY 1099
Query: 1075 FQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPP 1134
F+ +DG+ I GYNPATWMLEVT++A EE LGVDF+++YR SE Y+ + I+ LS PP
Sbjct: 1100 FEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKELIEELSTPP 1159
Query: 1135 PGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIG 1194
PGS L F + YS+ ++Q C WKQN YWR+P Y AVRL FT+ AL+ G++FW++G
Sbjct: 1160 PGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLG 1219
Query: 1195 SKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQ 1254
++ Q LF MG++YA+ L++GV N+ SVQP+V +ERTVFYRE+AAGMYS PYA Q
Sbjct: 1220 TRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQ 1279
Query: 1255 GLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQ 1314
+E+PY+ VQT+I+G + + MI FE T KF +L FM+ T YFTFYGMMAVGLTPN+
Sbjct: 1280 VAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNE 1339
Query: 1315 HLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV 1374
+AA+ISSAFY++WNL SG+LIPRP IP WW W+ +I PVAWTL G+V+SQ GD++ ++
Sbjct: 1340 SIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLE 1399
Query: 1375 EPTFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
T TV +++ + GF + V A V V F++ F F+F++ NFQ+R
Sbjct: 1400 GDT--RTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1578 bits (4087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/1413 (54%), Positives = 1018/1413 (72%), Gaps = 19/1413 (1%)
Query: 20 ESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVRKLN 79
E F+R+S E +DE+ L WAA+ +LP+ + LL G + +D+ L
Sbjct: 36 EIFSRSSRDE---DDEEALKWAALEKLPTFDRLRKGLL------FGSQGAAAEVDINDLG 86
Query: 80 RSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRAL 139
R+ ++ + + D+DN K L +K R+DRVGI++P +EVR+++L + AD GSR+L
Sbjct: 87 FQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRSL 146
Query: 140 PTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLA 199
PT +N + E +L L I ++ LTIL D+SG++KP RMTLLLGPP+SGK+TLLLA
Sbjct: 147 PTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLLA 206
Query: 200 LAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGAN 259
LAGKLD +LK +G ++YNG++L EF QRT+AYISQ D HI E+TVRET +F+AR QG
Sbjct: 207 LAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGVG 266
Query: 260 EGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319
F + +L+R EK NI+P +ID +MKA++ G++ +V TDYVLK+LGLD+C++T+V
Sbjct: 267 SRFEM-LAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMV 325
Query: 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDAT 379
G+DMIRG+SGGQKKRVTTGEM+VGP K LFMDEISTGLDSSTT+ IV LR V + T
Sbjct: 326 GDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGT 385
Query: 380 ILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEV 439
+++LLQP PET++LFDD++LLS+G++VYQGPR +VLEFFES+GF+ P RKGVADFLQEV
Sbjct: 386 AVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEV 445
Query: 440 TSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTR 499
TSKKDQ QYW+ ++PY F+ E A+A++ G+ L L+ P+DK+KCHP+AL+ +
Sbjct: 446 TSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEK 505
Query: 500 YAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNL 559
Y + K EL + C RE+LL++R+SF+Y+F+ Q+ + + T+F RT + +G +
Sbjct: 506 YGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGI 565
Query: 560 YLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEA 619
Y LFF V+ +MFNG SEL + I +LPVFYKQRD F P+WA+++ SWIL++P +++E
Sbjct: 566 YAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEV 625
Query: 620 VVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLL 679
+W + Y+ +GF P RF + LL ++QMA G+FR + ++ R M VA+TF S +LL
Sbjct: 626 GLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALL 685
Query: 680 IVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIGYNV 739
+ F +GGF++ ++ +K WW W YW+SP+ Y+ ++I VNEF +W G+ T+G V
Sbjct: 686 LQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTV 745
Query: 740 LHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAK 799
+ + YWYWIGVGAL+ ++++FN +LALAYLNP K Q V+ + EN+ + +
Sbjct: 746 VKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENA-ENGE 804
Query: 800 QQFEINTTSAPES-----GKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQL 854
+I +T +S KKGM+LPF+P ++TF +V Y VDMPQ M+ QG E +L L
Sbjct: 805 VSSQITSTDGGDSISESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVL 864
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L VSG F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYI+G+IKISGYPK+Q TFARIS
Sbjct: 865 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARIS 924
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFP 974
GY EQNDIHSP VTV ESL +SA LRL ++V + R FV+EVM LVEL LR ALVG P
Sbjct: 925 GYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLP 984
Query: 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1034
G +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT
Sbjct: 985 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1044
Query: 1035 IHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWM 1094
IHQPSIDIFEAFDEL LMKRGG+ IY G LG HS +I YF++ G+ I GYNPATWM
Sbjct: 1045 IHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWM 1104
Query: 1095 LEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQF 1154
LEVT +A E LG+DF +VY++S+ YR ++ I L VP PGS+ L F + YSQ +Q
Sbjct: 1105 LEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQC 1164
Query: 1155 FICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASC 1214
C WKQ+ YWR+P Y AVR FT ALI G++FWD+G+K S +Q L MG++YA+
Sbjct: 1165 VACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAV 1224
Query: 1215 LFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITF 1274
LFLGV NASSVQP+V+IERTVFYRE+AAGMYS IPYA Q +E+PY+FVQ++ +G I +
Sbjct: 1225 LFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVY 1284
Query: 1275 FMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGF 1334
MI FE KFF +L MF T YFTFYGMM V +TPNQ++A+++++ FY +WNL SGF
Sbjct: 1285 AMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGF 1344
Query: 1335 LIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTFRGTVKEYLEESLGFGP 1394
+IPRP +P WW W+Y+ +PVAWTL G+V+SQ GD++T + + TV+++L GF
Sbjct: 1345 IIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSD---NETVEQFLRRYFGFKH 1401
Query: 1395 GMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
+GV AAVL A+ +F +FAF++K NFQ+R
Sbjct: 1402 DFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1575 bits (4078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 781/1435 (54%), Positives = 1019/1435 (71%), Gaps = 36/1435 (2%)
Query: 20 ESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLK-TTTPRNGGEAKTETIDVRKL 78
+ F+R+S E +DE+ L WAA+ +LP+ + A+L G +DV L
Sbjct: 32 DVFSRSSREE---DDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDVHGL 88
Query: 79 NRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRA 138
R ++ + + D+DN K L +K+R+DRVGI++P +EVRF++L+ A+V+ G+
Sbjct: 89 GPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEVRVGNSG 148
Query: 139 LPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLL 198
LPT++N+ + E L I ++ ++ +L+DVSG++KP RMTLLLGPP SGK+TLLL
Sbjct: 149 LPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTTLLL 208
Query: 199 ALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGA 258
ALAG+L LK SG +TYNG+ ++EF +RT+AYISQ D HI E+TVRET F+AR QG
Sbjct: 209 ALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGV 268
Query: 259 NEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318
F + +L+R EK NI+P +IDAFMKA+++GG++ +V+TDY+LK+LGL++C++T+
Sbjct: 269 GSRFDM-LTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTM 327
Query: 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDA 378
VG++M+RG+SGGQ+KRVTTGEM+VGP + LFMDEISTGLDSSTTFQIV LR VH +
Sbjct: 328 VGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGG 387
Query: 379 TILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQE 438
T +++LLQP PET++LFDD++LLS+G +VYQGPR +VLEFFES+GF+ P RKGVADFLQE
Sbjct: 388 TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVADFLQE 447
Query: 439 VTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKT 498
VTSKKDQ QYWA KPY F+ V E AF+ G+A+ + L+VP+DKSK HP+AL+ T
Sbjct: 448 VTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATT 507
Query: 499 RYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGN 558
RY EL + REILL++R+SF+Y+FRT Q+ V +A T+F RT++ +G
Sbjct: 508 RYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGG 567
Query: 559 LYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLE 618
+Y+ LFF V+ +MFNGFSEL + + +LPVF+KQRD F+PAW++++ SWIL++P + +E
Sbjct: 568 IYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIE 627
Query: 619 AVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSL 678
+ + Y+ +GF G FF+ L+ +++QMA LFR + AR+M+VAN FAS L
Sbjct: 628 VGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFML 687
Query: 679 LIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKK--KSVIGDNTIG 736
LI ++GGFI+ +E +K WW W YW+SP+ YAQ+AISVNE W K S + T+G
Sbjct: 688 LIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLG 747
Query: 737 YNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVK 796
VL + + WYWIG GA++ +++LFN++ TLAL YL P S+ + + EE K
Sbjct: 748 VQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSE-EELKEK 806
Query: 797 MAKQQFEINTTSAPESGK-----------------------KKGMILPFQPLAMTFHNVN 833
A EI SG ++GM+LPF PL+++F NV
Sbjct: 807 RANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDNVR 866
Query: 834 YYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY 893
Y VDMPQ M++QG+ + +L+LL VSG F PGVLTAL+G SGAGKTTLMDVLAGRKTGGY
Sbjct: 867 YSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 926
Query: 894 IEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEF 953
IEG I ISGYPK+Q TFAR+SGY EQNDIHSPQVTV ESL FSA LRL ++V N R F
Sbjct: 927 IEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMF 986
Query: 954 VEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
+EEVM LVEL SLRDALVG PG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 987 IEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1046
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMID 1073
AAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDEL LMKRGG IY G LG HS +I
Sbjct: 1047 AAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIK 1106
Query: 1074 YFQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVP 1133
YF+++ G+ I GYNPATWMLEVTT E+ LGVDF+D+Y+ SE Y+ ++ IK+LS P
Sbjct: 1107 YFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQP 1166
Query: 1134 PPGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDI 1193
P S L F + YSQ L+Q C WKQNL YWR+P YNAVR FT AL+ G++FWD+
Sbjct: 1167 APDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDL 1226
Query: 1194 GSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVA 1253
G K + +Q LF MG++YA+ LF+GV N +SVQP+V++ERTVFYRE+AAGMYS PYA
Sbjct: 1227 GGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFG 1286
Query: 1254 QGLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPN 1313
Q ++E+PY VQ ++G I + MI FE TA KFF +L FM T YFTFYGMMAVGLTPN
Sbjct: 1287 QVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPN 1346
Query: 1314 QHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMI 1373
H+A+++SSAFY++WNL SGF+IPRP +P WW W+ + PVAWTL G+V SQ GD+ET
Sbjct: 1347 YHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIET-- 1404
Query: 1374 VEPTFRGT-VKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
P GT VK ++E GF +G A V+ AF+ LF F F++ NFQKR
Sbjct: 1405 --PMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1427 | ||||||
| 297822715 | 1428 | ATPDR3/PDR3 [Arabidopsis lyrata subsp. l | 0.994 | 0.993 | 0.745 | 0.0 | |
| 42569461 | 1426 | ABC transporter G family member 31 [Arab | 0.992 | 0.993 | 0.749 | 0.0 | |
| 255569339 | 1433 | ATP-binding cassette transporter, putati | 0.998 | 0.994 | 0.770 | 0.0 | |
| 3420057 | 1443 | putative ABC transporter [Arabidopsis th | 0.992 | 0.981 | 0.740 | 0.0 | |
| 356551861 | 1440 | PREDICTED: ABC transporter G family memb | 0.997 | 0.988 | 0.744 | 0.0 | |
| 224059296 | 1432 | predicted protein [Populus trichocarpa] | 0.997 | 0.994 | 0.784 | 0.0 | |
| 225434598 | 1415 | PREDICTED: ABC transporter G family memb | 0.991 | 1.0 | 0.761 | 0.0 | |
| 449450812 | 1486 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.995 | 0.956 | 0.724 | 0.0 | |
| 357490693 | 1487 | Pleiotropic drug resistance ABC transpor | 0.996 | 0.956 | 0.727 | 0.0 | |
| 297745902 | 1483 | unnamed protein product [Vitis vinifera] | 0.984 | 0.947 | 0.715 | 0.0 |
| >gi|297822715|ref|XP_002879240.1| ATPDR3/PDR3 [Arabidopsis lyrata subsp. lyrata] gi|297325079|gb|EFH55499.1| ATPDR3/PDR3 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2283 bits (5915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1069/1433 (74%), Positives = 1239/1433 (86%), Gaps = 14/1433 (0%)
Query: 2 AASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGN---FALLK 58
AASNGSEYFE +++ T RESF R SNA+++E+DE++L WAAI RLPSQ+QG+ L
Sbjct: 3 AASNGSEYFEFDVE-TGRESFARPSNADTVEQDEEDLRWAAIGRLPSQRQGSQSAILLRS 61
Query: 59 TTTPRNGGEAK---TETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIE 115
T + G A +TIDV+KL+R+ RE++V +ALAT+DQDN+KLLSAIKERLDRVG+E
Sbjct: 62 QTQTQTSGYADGNVVQTIDVKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGME 121
Query: 116 VPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSG 175
VPK+EVRF+NL + ADVQ G+RALPTLVN +RD FER L+ LRI KP++H L IL D+SG
Sbjct: 122 VPKIEVRFENLNIEADVQAGTRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISG 181
Query: 176 VVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQ 235
++KPGRMTLLLGPP SGKSTLLLAL+GKLD SLKK+GNITYNG LD+FHV+RTSAYISQ
Sbjct: 182 IIKPGRMTLLLGPPGSGKSTLLLALSGKLDKSLKKTGNITYNGENLDKFHVKRTSAYISQ 241
Query: 236 TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGG 295
TDNHI ELTVRET DFAAR QGA+EGFA Y+ DL RLEKER IRPS EIDAFMKA+SV G
Sbjct: 242 TDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVSG 301
Query: 296 KKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 355
+KHSVSTDYVL+VLGLD+CS+T+VGNDM+RGVSGGQ+KRVTTGEM VGPRKTLFMDEIST
Sbjct: 302 EKHSVSTDYVLRVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEIST 361
Query: 356 GLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEV 415
GLDSSTTFQIVKC+RNFVH MDAT+LMALLQP PETFDLFDDL+LLSEG++VYQGPR +V
Sbjct: 362 GLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDV 421
Query: 416 LEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGK 475
+ FFESLGF++PPRKGVADFLQEVTSKKDQAQYW DPSKPY F+PVS+IA AF++S++G
Sbjct: 422 IAFFESLGFRIPPRKGVADFLQEVTSKKDQAQYWVDPSKPYQFIPVSDIAAAFRNSKYGH 481
Query: 476 ALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAF 535
A S L+ P+DKS PSAL +T++A+S WE + CF REILLI RH FLY FRTCQVAF
Sbjct: 482 AADSKLATPFDKSSVDPSALCRTKFAISGWENLKVCFVREILLINRHRFLYTFRTCQVAF 541
Query: 536 VGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDN 595
VG V T+FLRTRLHPT E+ GN YLSCLFF +VHMMFNGFSELP+MI+RLPVFYKQRDN
Sbjct: 542 VGLVTATVFLRTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDN 601
Query: 596 YFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALG 655
FHPAW+WS+ASW+LRVPYS+LEAVVWSCVVY++VG AP GRFFR+M LLFS+HQMALG
Sbjct: 602 SFHPAWSWSIASWLLRVPYSILEAVVWSCVVYYSVGLAPSAGRFFRYMLLLFSVHQMALG 661
Query: 656 LFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAIS 715
LFRMMAS+ARDMV+ANTF S+++L+VFL+GGF+IPK IKPWW W +WVSPLSY Q AI+
Sbjct: 662 LFRMMASLARDMVIANTFGSAAILVVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIA 721
Query: 716 VNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALA 775
VNEF A RW S I D +IG+N+L S P+ D WYWIG+ L+ Y++LFN+VVTLALA
Sbjct: 722 VNEFTATRWMSPSAISDTSIGFNLLKLRSFPTNDNWYWIGIAVLIGYAILFNNVVTLALA 781
Query: 776 YLNPLRKSQ-VVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNY 834
YLNPLRK++ VV+DD +E + Q + + E +KKGMILPF+PL MTFHNVNY
Sbjct: 782 YLNPLRKARAVVLDDPKEET------QTSLVADANQEKSQKKGMILPFKPLTMTFHNVNY 835
Query: 835 YVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 894
YVDMP+ MRSQG+PE +LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY
Sbjct: 836 YVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYT 895
Query: 895 EGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFV 954
EGDI+ISG+PKEQ TFARISGYVEQNDIHSPQVTVEESLWFSA+LRL KE+SK Q+ EFV
Sbjct: 896 EGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEISKEQKKEFV 955
Query: 955 EEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
EEVMRLVELD+LR ALVG PG++GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 956 EEVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1015
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDY 1074
AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG+VIYGGKLG HS+ ++DY
Sbjct: 1016 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDY 1075
Query: 1075 FQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPP 1134
FQ ++G+P+I SGYNPATWMLEVTT A EEK ++FAD+Y+ S+Q+R VE +IK LSVPP
Sbjct: 1076 FQGINGVPAISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEENIKQLSVPP 1135
Query: 1135 PGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIG 1194
GSEP+ F+S YSQ+ LSQF +C WKQNL+YWRSP+YN VRL FT AA ILG+VFWDIG
Sbjct: 1136 EGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIG 1195
Query: 1195 SKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQ 1254
S+R+S+Q L VMGALY++CLFLGV+NASSVQPIVSIERTVFYREKAAGMY+PIPYA AQ
Sbjct: 1196 SRRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQ 1255
Query: 1255 GLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQ 1314
GLVE+PY+ QTI++G IT+F I FERT KF L+LVFMFLTF+YFTFYGMMAVGLTPNQ
Sbjct: 1256 GLVEIPYILTQTILYGVITYFTIGFERTLSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQ 1315
Query: 1315 HLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV 1374
HLAAVISSAFYSLWNL SGFL+ +P IP WWIWFYYI PVAWTL+G++ SQLGDVE+MI
Sbjct: 1316 HLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMIN 1375
Query: 1375 EPTFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
EP F GTVKE++E G+ P M+GVSAAVLV F LFF +FA SVK+LNFQ+R
Sbjct: 1376 EPMFHGTVKEFIELYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1428
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42569461|ref|NP_180555.2| ABC transporter G family member 31 [Arabidopsis thaliana] gi|75326886|sp|Q7PC88.1|AB31G_ARATH RecName: Full=ABC transporter G family member 31; Short=ABC transporter ABCG.31; Short=AtABCG31; AltName: Full=Probable pleiotropic drug resistance protein 3 gi|28144325|tpg|DAA00871.1| TPA_exp: PDR3 ABC transporter [Arabidopsis thaliana] gi|330253231|gb|AEC08325.1| ABC transporter G family member 31 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2280 bits (5909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1074/1433 (74%), Positives = 1239/1433 (86%), Gaps = 16/1433 (1%)
Query: 2 AASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNF-ALLK-- 58
AASNGSEYFE +++ T RESF R SNAE++E+DE++L WAAI RLPSQ+QG A+L+
Sbjct: 3 AASNGSEYFEFDVE-TGRESFARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRS 61
Query: 59 TTTPRNGGEAK---TETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIE 115
T + G A +TIDV+KL+R+ RE++V +ALAT+DQDN+KLLSAIKERLDRVG+E
Sbjct: 62 QTQTQTSGYADGNVVQTIDVKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGME 121
Query: 116 VPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSG 175
VPK+EVRF+NL + ADVQ G+RALPTLVN +RD FER L+ LRI KP++H L IL D+SG
Sbjct: 122 VPKIEVRFENLNIEADVQAGTRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISG 181
Query: 176 VVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQ 235
++KPGRMTLLLGPP SGKSTLLLALAGKLD SLKK+GNITYNG L++FHV+RTSAYISQ
Sbjct: 182 IIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQ 241
Query: 236 TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGG 295
TDNHI ELTVRET DFAAR QGA+EGFA Y+ DL RLEKER IRPS EIDAFMKA+SV G
Sbjct: 242 TDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKG 301
Query: 296 KKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 355
+KHSVSTDYVLKVLGLD+CS+T+VGNDM+RGVSGGQ+KRVTTGEM VGPRKTLFMDEIST
Sbjct: 302 EKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEIST 361
Query: 356 GLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEV 415
GLDSSTTFQIVKC+RNFVH MDAT+LMALLQP PETFDLFDDL+LLSEG++VYQGPR +V
Sbjct: 362 GLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDV 421
Query: 416 LEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGK 475
+ FFESLGF+LPPRKGVADFLQEVTSKKDQAQYWADPSKPY F+PVS+IA AF++S++G
Sbjct: 422 IAFFESLGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGH 481
Query: 476 ALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAF 535
A S L+ P+DK PSAL +T++A+S WE + CF RE+LLI+RH FLY FRTCQV F
Sbjct: 482 AADSKLAAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGF 541
Query: 536 VGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDN 595
VG V T+FL+TRLHPT E+ GN YLSCLFF +VHMMFNGFSELP+MI+RLPVFYKQRDN
Sbjct: 542 VGLVTATVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDN 601
Query: 596 YFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALG 655
FHPAW+WS+ASW+LRVPYSVLEAVVWS VVYFTVG AP GRFFR+M LLFS+HQMALG
Sbjct: 602 SFHPAWSWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALG 661
Query: 656 LFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAIS 715
LFRMMAS+ARDMV+ANTF S+++LIVFL+GGF+IPK IKPWW W +WVSPLSY Q AI+
Sbjct: 662 LFRMMASLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIA 721
Query: 716 VNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALA 775
VNEF A RW S I D TIG N+L S P+ DYWYWIG+ L+ Y++LFN+VVTLALA
Sbjct: 722 VNEFTATRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALA 781
Query: 776 YLNPLRKSQ-VVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNY 834
YLNPLRK++ VV+DD E + +A I+ +KKGMILPF+PL MTFHNVNY
Sbjct: 782 YLNPLRKARAVVLDDPNEETALVADANQVIS--------EKKGMILPFKPLTMTFHNVNY 833
Query: 835 YVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 894
YVDMP+ MRSQG+PE +LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY
Sbjct: 834 YVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYT 893
Query: 895 EGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFV 954
EGDI+ISG+PKEQ TFARISGYVEQNDIHSPQVTVEESLWFSA+LRL KE++K Q+ EFV
Sbjct: 894 EGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFV 953
Query: 955 EEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
E+VMRLVELD+LR ALVG PG++GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 954 EQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1013
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDY 1074
AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG+VIYGGKLG HS+ ++DY
Sbjct: 1014 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDY 1073
Query: 1075 FQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPP 1134
FQ ++G+P I SGYNPATWMLEVTT A EEK ++FAD+Y+ S+Q+R VE++IK LSVPP
Sbjct: 1074 FQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPP 1133
Query: 1135 PGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIG 1194
GSEP+ F+S YSQ+ LSQF +C WKQNL+YWRSP+YN VRL FT AA ILG+VFWDIG
Sbjct: 1134 EGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIG 1193
Query: 1195 SKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQ 1254
SKR+S+Q L VMGALY++CLFLGV+NASSVQPIVSIERTVFYREKAAGMY+PIPYA AQ
Sbjct: 1194 SKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQ 1253
Query: 1255 GLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQ 1314
GLVE+PY+ QTI++G IT+F I FERT KF L+LVFMFLTF+YFTFYGMMAVGLTPNQ
Sbjct: 1254 GLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQ 1313
Query: 1315 HLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV 1374
HLAAVISSAFYSLWNL SGFL+ +P IP WWIWFYYI PVAWTL+G++ SQLGDVE+MI
Sbjct: 1314 HLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMIN 1373
Query: 1375 EPTFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
EP F GTVKE++E G+ P M+GVSAAVLV F LFF +FA SVK+LNFQ+R
Sbjct: 1374 EPLFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569339|ref|XP_002525637.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223535073|gb|EEF36755.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2272 bits (5888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1103/1432 (77%), Positives = 1259/1432 (87%), Gaps = 7/1432 (0%)
Query: 2 AASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTT 61
AA +G+EY E++ID RESF RASNAES++EDEDEL+W AI+RLPSQ++GNFALL+ +
Sbjct: 3 AAMDGTEYLELQID-HFRESFARASNAESVQEDEDELLWEAISRLPSQRRGNFALLRRSA 61
Query: 62 ---PRNGGEAKTETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPK 118
+G +TETIDV +L+R+ RELVV KALATN QDN++LLS IKERLDRVG+EVPK
Sbjct: 62 SEYAEDGSGKRTETIDVTRLDRANRELVVKKALATNAQDNHRLLSGIKERLDRVGLEVPK 121
Query: 119 VEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVK 178
+EVRF+ L VV +V+TGSRALPTL+N RD FE ILTGLRIF+ K+HSLTILND+SG +K
Sbjct: 122 IEVRFERLNVVGNVRTGSRALPTLINVVRDTFEDILTGLRIFRLKKHSLTILNDISGAIK 181
Query: 179 PGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDN 238
PGRMTLLLGPP SGKSTLLLALAGKLD +LK++G+ITYNG+KLD F+V+RTSAYISQ DN
Sbjct: 182 PGRMTLLLGPPGSGKSTLLLALAGKLDKNLKRTGSITYNGHKLDHFYVRRTSAYISQIDN 241
Query: 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKH 298
HI ELTVRET DFAA QGA+EGFAAY+ DL RLEKE++IRPSPEIDAFMKASSV GKKH
Sbjct: 242 HIAELTVRETLDFAASCQGASEGFAAYMKDLIRLEKEQDIRPSPEIDAFMKASSVAGKKH 301
Query: 299 SVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 358
SVSTDYVLKVLGLD+C+ETVVG+DM+RGVSGGQ+KRVTTGEMIVGPRKTL MDEISTGLD
Sbjct: 302 SVSTDYVLKVLGLDVCAETVVGSDMLRGVSGGQRKRVTTGEMIVGPRKTLLMDEISTGLD 361
Query: 359 SSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEF 418
SSTT+QIVKC+ NFVHQMD T+LMALLQPPPETFDLFDDL+LLSEG++VYQGPRAEVLEF
Sbjct: 362 SSTTYQIVKCIGNFVHQMDGTVLMALLQPPPETFDLFDDLVLLSEGYMVYQGPRAEVLEF 421
Query: 419 FESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALK 478
FESLGF+LPPRKGVADFLQEVTSKKDQAQYW D KPY ++PV EIAKAFK SR+G++++
Sbjct: 422 FESLGFRLPPRKGVADFLQEVTSKKDQAQYWDDHLKPYAYIPVPEIAKAFKSSRWGRSVE 481
Query: 479 SSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGF 538
S +SVP+DK+K PSAL+KT +AV +WEL + CFARE+LLI+RH FLYIFRT QV FVG
Sbjct: 482 SMVSVPFDKTKDSPSALAKTEFAVPRWELLKACFAREVLLIRRHWFLYIFRTLQVFFVGC 541
Query: 539 VACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFH 598
+ T+FLRTRLHPTDE NGNLYLSCLFF +VHMMFNGFSEL ++I RLPVF+KQRDN FH
Sbjct: 542 ITSTIFLRTRLHPTDEINGNLYLSCLFFGLVHMMFNGFSELSLLIFRLPVFFKQRDNLFH 601
Query: 599 PAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFR 658
P WAWS+ S+ILR+PYS +EA VWSCVVY++V F PE RFFR MFLLF++HQMALGLFR
Sbjct: 602 PGWAWSIVSFILRIPYSAVEAFVWSCVVYYSVDFTPEISRFFRFMFLLFTVHQMALGLFR 661
Query: 659 MMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNE 718
MASIARDMV+ANTF S++LL+VFL+GGFIIPKESIKPWW WAYWVSPL+Y Q A+SVNE
Sbjct: 662 TMASIARDMVIANTFGSAALLVVFLLGGFIIPKESIKPWWIWAYWVSPLTYGQRALSVNE 721
Query: 719 FAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLN 778
F A RW+K S IG+NTIGYNVLH HSLP+ D WYWIGVG L LY+L+FN +VTLAL YLN
Sbjct: 722 FGAERWRKISTIGNNTIGYNVLHGHSLPTSDNWYWIGVGMLWLYALVFNIIVTLALTYLN 781
Query: 779 PLRKSQVVID--DKEEN-SVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYY 835
PL+K++ V D D EN S + + E+N S+ ES ++KGMILPFQPL MTFHNVNY+
Sbjct: 782 PLQKAKTVADPVDSTENVSAGNSDEGLELNQISSLESNRRKGMILPFQPLTMTFHNVNYF 841
Query: 836 VDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 895
VDMP+ M QG+PEKKLQLLSNVSGVFSPGVLTALVG+SGAGKTTLMDVLAGRKTGGYIE
Sbjct: 842 VDMPKEMSKQGVPEKKLQLLSNVSGVFSPGVLTALVGASGAGKTTLMDVLAGRKTGGYIE 901
Query: 896 GDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVE 955
GDIKISGYPKEQ TF+RISGYVEQNDIHSPQVTVEESLWFS++LRL K+V+K QRHEFVE
Sbjct: 902 GDIKISGYPKEQGTFSRISGYVEQNDIHSPQVTVEESLWFSSSLRLPKDVTKEQRHEFVE 961
Query: 956 EVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
EVMRLVELD+LR ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 962 EVMRLVELDTLRQALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1021
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYF 1075
IVMRTVRNTVDTGRT+VCTIHQPSIDIFEAFDELLLMKRGG+VIYGGKLG HS+ MIDYF
Sbjct: 1022 IVMRTVRNTVDTGRTLVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGGHSQIMIDYF 1081
Query: 1076 QALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPP 1135
Q + G+P I GYNPATWMLEVTTA EEK+G DFA++Y SEQYR VE+SI + S PP
Sbjct: 1082 QRIKGVPPISEGYNPATWMLEVTTAFIEEKIGDDFAEIYSKSEQYREVEASIMHFSTPPV 1141
Query: 1136 GSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGS 1195
GSEPLKFSSTY+QD LSQF IC K+NL+YWRSP+YNAVR+ FTV AA ILGSVFW IGS
Sbjct: 1142 GSEPLKFSSTYAQDLLSQFQICLKKENLVYWRSPRYNAVRIFFTVLAAFILGSVFWKIGS 1201
Query: 1196 KRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQG 1255
KR +TQ LF+VMGALY++C+FLGVNNASSVQPIVSIERTVFYREKAAGMYSP+ YA AQG
Sbjct: 1202 KRDTTQDLFVVMGALYSACMFLGVNNASSVQPIVSIERTVFYREKAAGMYSPLAYAAAQG 1261
Query: 1256 LVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQH 1315
LVE+PY+ +QTI++G IT+FMI FE+TA KFFL+L+FMFLTF+YFTFYGMMAVGLTP+QH
Sbjct: 1262 LVEVPYIILQTILYGLITYFMIGFEKTAGKFFLYLLFMFLTFTYFTFYGMMAVGLTPSQH 1321
Query: 1316 LAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVE 1375
+AAVISSAFYSLWNL SGFLIP IPGWWIWFYYI P+AWTLRG++SSQLGDVE +IV
Sbjct: 1322 MAAVISSAFYSLWNLLSGFLIPMSKIPGWWIWFYYICPIAWTLRGVISSQLGDVEDIIVG 1381
Query: 1376 PTFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
P F+GTVKEYL+ + GF M+GVS AVL AF LFF FAFS K LNFQ+R
Sbjct: 1382 PGFKGTVKEYLKVNFGFESNMIGVSVAVLFAFCFLFFSVFAFSAKVLNFQRR 1433
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3420057|gb|AAC31858.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2269 bits (5881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1074/1450 (74%), Positives = 1239/1450 (85%), Gaps = 33/1450 (2%)
Query: 2 AASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNF-ALLK-- 58
AASNGSEYFE +++ T RESF R SNAE++E+DE++L WAAI RLPSQ+QG A+L+
Sbjct: 3 AASNGSEYFEFDVE-TGRESFARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRS 61
Query: 59 TTTPRNGGEAK---TETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDR---- 111
T + G A +TIDV+KL+R+ RE++V +ALAT+DQDN+KLLSAIKERLDR
Sbjct: 62 QTQTQTSGYADGNVVQTIDVKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRFVTT 121
Query: 112 -------------VGIEVPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLR 158
VG+EVPK+EVRF+NL + ADVQ G+RALPTLVN +RD FER L+ LR
Sbjct: 122 LRILSVSNFREKKVGMEVPKIEVRFENLNIEADVQAGTRALPTLVNVSRDFFERCLSSLR 181
Query: 159 IFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG 218
I KP++H L IL D+SG++KPGRMTLLLGPP SGKSTLLLALAGKLD SLKK+GNITYNG
Sbjct: 182 IIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNG 241
Query: 219 YKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI 278
L++FHV+RTSAYISQTDNHI ELTVRET DFAAR QGA+EGFA Y+ DL RLEKER I
Sbjct: 242 ENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGI 301
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG 338
RPS EIDAFMKA+SV G+KHSVSTDYVLKVLGLD+CS+T+VGNDM+RGVSGGQ+KRVTTG
Sbjct: 302 RPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTG 361
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398
EM VGPRKTLFMDEISTGLDSSTTFQIVKC+RNFVH MDAT+LMALLQP PETFDLFDDL
Sbjct: 362 EMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDL 421
Query: 399 LLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVF 458
+LLSEG++VYQGPR +V+ FFESLGF+LPPRKGVADFLQEVTSKKDQAQYWADPSKPY F
Sbjct: 422 ILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQF 481
Query: 459 LPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILL 518
+PVS+IA AF++S++G A S L+ P+DK PSAL +T++A+S WE + CF RE+LL
Sbjct: 482 IPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLL 541
Query: 519 IQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSE 578
I+RH FLY FRTCQV FVG V T+FL+TRLHPT E+ GN YLSCLFF +VHMMFNGFSE
Sbjct: 542 IKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSE 601
Query: 579 LPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGR 638
LP+MI+RLPVFYKQRDN FHPAW+WS+ASW+LRVPYSVLEAVVWS VVYFTVG AP GR
Sbjct: 602 LPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGR 661
Query: 639 FFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWW 698
FFR+M LLFS+HQMALGLFRMMAS+ARDMV+ANTF S+++LIVFL+GGF+IPK IKPWW
Sbjct: 662 FFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWW 721
Query: 699 SWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGA 758
W +WVSPLSY Q AI+VNEF A RW S I D TIG N+L S P+ DYWYWIG+
Sbjct: 722 VWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAV 781
Query: 759 LLLYSLLFNSVVTLALAYLNPLRKSQ-VVIDDKEENSVKMAKQQFEINTTSAPESGKKKG 817
L+ Y++LFN+VVTLALAYLNPLRK++ VV+DD E + +A I+ +KKG
Sbjct: 782 LIGYAILFNNVVTLALAYLNPLRKARAVVLDDPNEETALVADANQVIS--------EKKG 833
Query: 818 MILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAG 877
MILPF+PL MTFHNVNYYVDMP+ MRSQG+PE +LQLLSNVSGVFSPGVLTALVGSSGAG
Sbjct: 834 MILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAG 893
Query: 878 KTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSA 937
KTTLMDVLAGRKTGGY EGDI+ISG+PKEQ TFARISGYVEQNDIHSPQVTVEESLWFSA
Sbjct: 894 KTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSA 953
Query: 938 NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANP 997
+LRL KE++K Q+ EFVE+VMRLVELD+LR ALVG PG++GLSTEQRKRLTIAVELVANP
Sbjct: 954 SLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANP 1013
Query: 998 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG+
Sbjct: 1014 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1073
Query: 1058 VIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSS 1117
VIYGGKLG HS+ ++DYFQ ++G+P I SGYNPATWMLEVTT A EEK ++FAD+Y+ S
Sbjct: 1074 VIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKS 1133
Query: 1118 EQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLA 1177
+Q+R VE++IK LSVPP GSEP+ F+S YSQ+ LSQF +C WKQNL+YWRSP+YN VRL
Sbjct: 1134 DQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLV 1193
Query: 1178 FTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFY 1237
FT AA ILG+VFWDIGSKR+S+Q L VMGALY++CLFLGV+NASSVQPIVSIERTVFY
Sbjct: 1194 FTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFY 1253
Query: 1238 REKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTF 1297
REKAAGMY+PIPYA AQGLVE+PY+ QTI++G IT+F I FERT KF L+LVFMFLTF
Sbjct: 1254 REKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTF 1313
Query: 1298 SYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWT 1357
+YFTFYGMMAVGLTPNQHLAAVISSAFYSLWNL SGFL+ +P IP WWIWFYYI PVAWT
Sbjct: 1314 TYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWT 1373
Query: 1358 LRGIVSSQLGDVETMIVEPTFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAF 1417
L+G++ SQLGDVE+MI EP F GTVKE++E G+ P M+GVSAAVLV F LFF +FA
Sbjct: 1374 LQGVILSQLGDVESMINEPLFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFAL 1433
Query: 1418 SVKFLNFQKR 1427
SVK+LNFQ+R
Sbjct: 1434 SVKYLNFQRR 1443
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551861|ref|XP_003544291.1| PREDICTED: ABC transporter G family member 31-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2260 bits (5857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1075/1443 (74%), Positives = 1260/1443 (87%), Gaps = 19/1443 (1%)
Query: 1 MAASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTT 60
MAAS+GSEYFE+ G+ ESF RASNA+ + EDE+EL W A++RLPSQK+ N+ALL+ +
Sbjct: 1 MAASDGSEYFEIGSFGS--ESFARASNADMVREDEEELQWVALSRLPSQKRINYALLRAS 58
Query: 61 T-----PRNGGEAKTETI-DVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGI 114
+ P G TE + DVRKL+RS RE VV KALATNDQDNY+LL+AIKER DRVG+
Sbjct: 59 SSRPQPPTQGTGTGTENLMDVRKLSRSSREQVVKKALATNDQDNYRLLAAIKERFDRVGL 118
Query: 115 EVPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVS 174
+VPK+EVR++NL V ADVQ GSRALPTL+N TRDVFE ILT L I +PKRHSLTILNDVS
Sbjct: 119 KVPKIEVRYKNLSVTADVQIGSRALPTLINYTRDVFESILTKLMICRPKRHSLTILNDVS 178
Query: 175 GVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYIS 234
GV+KPGRMTLLLGPP +GK++LLLALAGKLDS+LK +G+ITYNG++LDEF+V+RTSAYIS
Sbjct: 179 GVIKPGRMTLLLGPPGAGKTSLLLALAGKLDSNLKTTGSITYNGHELDEFYVRRTSAYIS 238
Query: 235 QTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVG 294
QTD+HI ELTVRET DF AR QGA +GFAAY ++L R E ERNIRPSPE+DAFMKASSVG
Sbjct: 239 QTDDHIAELTVRETLDFGARCQGA-KGFAAYTDELGRREIERNIRPSPEVDAFMKASSVG 297
Query: 295 GKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 354
GKKHSV+TDY+LKVLGLD+CS+T+VGNDM+RGVSGGQ+KRVTTGEMIVGPRKTLFMDEIS
Sbjct: 298 GKKHSVNTDYILKVLGLDICSDTIVGNDMLRGVSGGQRKRVTTGEMIVGPRKTLFMDEIS 357
Query: 355 TGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAE 414
TGLDSSTTF IVKC+RNFVHQM+AT+LMALLQP PETF+LFDDL+LL+EGH+VY+GPR +
Sbjct: 358 TGLDSSTTFLIVKCIRNFVHQMEATVLMALLQPAPETFELFDDLVLLAEGHVVYEGPRED 417
Query: 415 VLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFG 474
VLEFF+SLGFQLPPRKG+ADFLQEVTSKKDQAQYWADPSKPY F+ V+EIA+AF++S+FG
Sbjct: 418 VLEFFQSLGFQLPPRKGIADFLQEVTSKKDQAQYWADPSKPYQFVSVAEIARAFRNSKFG 477
Query: 475 KALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVA 534
+ ++S + PYDKS+CH AL++T+YAV+ WE+ + CF RE+LLI+RHSFLYIFRTCQVA
Sbjct: 478 RYMESLQTHPYDKSECHDLALARTKYAVATWEVVKACFQREVLLIKRHSFLYIFRTCQVA 537
Query: 535 FVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRD 594
FVGFV CT+FLRTRLHPT+E G LYLS LFF +VHMMFNGFSELP+MITRLPVFYKQRD
Sbjct: 538 FVGFVTCTIFLRTRLHPTNEVYGRLYLSALFFGLVHMMFNGFSELPLMITRLPVFYKQRD 597
Query: 595 NYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMAL 654
N F+PAWAWS++SWILRVPYS++EA++W+ VVY++VGFAP GRFFR+M +LF +HQMAL
Sbjct: 598 NLFYPAWAWSLSSWILRVPYSIIEAIIWTVVVYYSVGFAPSAGRFFRYMLILFVMHQMAL 657
Query: 655 GLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAI 714
GLFRMMA+IARDMV+ANT+ S+SLL+VFL+GGFI+PK IKPWW W YWVSPL+Y Q AI
Sbjct: 658 GLFRMMAAIARDMVLANTYGSASLLVVFLLGGFIVPKGMIKPWWIWGYWVSPLTYGQRAI 717
Query: 715 SVNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLAL 774
+VNEF A+RW KKS G++T+GYN+LH++SLP+GDYWYWIG+ L+ Y+ FN++VT+AL
Sbjct: 718 TVNEFTASRWMKKSETGNSTVGYNILHSNSLPTGDYWYWIGIAVLIGYAFFFNNMVTVAL 777
Query: 775 AYLNPLRKSQVVIDDKEENSVKMAK----QQFEINT-TSAPESGKKKGMILPFQPLAMTF 829
YLNP++K++ VI +++ ++ Q +E++T T + KGMILPFQPL MTF
Sbjct: 778 TYLNPIQKARTVIPSDDDSENSSSRNASNQAYELSTRTRSAREDNNKGMILPFQPLTMTF 837
Query: 830 HNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK 889
HNVNY+VDMP+ + QGIPE +LQLLS+VSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK
Sbjct: 838 HNVNYFVDMPKELSKQGIPETRLQLLSSVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK 897
Query: 890 TGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ 949
TGGYIEG+IKISG+PKEQ TFARISGYVEQNDIHSPQVT+EESL FS++LRL KEV ++
Sbjct: 898 TGGYIEGEIKISGHPKEQRTFARISGYVEQNDIHSPQVTIEESLLFSSSLRLPKEVGTSK 957
Query: 950 RHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
RHEFVE+VM+LVELD+LR AL+G PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 958 RHEFVEQVMKLVELDTLRHALIGMPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1017
Query: 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSK 1069
DARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHS+
Sbjct: 1018 DARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSR 1077
Query: 1070 TMIDYFQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKN 1129
MIDYFQ + GIP IPSGYNPATW+LEVTT ATEE++G DFAD+Y++S+QYR VE S+
Sbjct: 1078 IMIDYFQGIRGIPPIPSGYNPATWVLEVTTPATEERIGEDFADIYKNSDQYRGVEYSVLQ 1137
Query: 1130 LSVPPPGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSV 1189
PP GSEPLKF + YSQ+ +QF C WKQNL+YWRSP YNA+RL FT +ALI G++
Sbjct: 1138 FGHPPAGSEPLKFDTIYSQNLFNQFLRCLWKQNLVYWRSPAYNAMRLYFTTISALIFGTI 1197
Query: 1190 FWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIP 1249
FWDIGSKR STQ LF+VMGALY++C+FLGVNNASSVQPIVSIERTVFYREKAAGMYSPI
Sbjct: 1198 FWDIGSKRESTQELFVVMGALYSACMFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIA 1257
Query: 1250 YAVAQGLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVG 1309
YA AQGL+E+PY+ VQT++FG IT+FMINFERT KFFL+LVFMFLTF+YFTFYGMMAVG
Sbjct: 1258 YAAAQGLIEIPYIAVQTVLFGVITYFMINFERTPGKFFLYLVFMFLTFTYFTFYGMMAVG 1317
Query: 1310 LTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDV 1369
LTP+QHLAAVISSAFYSLWNL SGFLIP+ SIPGWWIWFYYI P+AWTLRGI++SQLGDV
Sbjct: 1318 LTPSQHLAAVISSAFYSLWNLLSGFLIPKSSIPGWWIWFYYICPIAWTLRGIITSQLGDV 1377
Query: 1370 ETMIVEPTFRGTVKEYLEESLGF-----GPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNF 1424
ET I+ P F GTVKEYL SLGF G VG+S VL+ F +LFFGSFA SVK LNF
Sbjct: 1378 ETKIIGPGFEGTVKEYLVVSLGFETKINGFSAVGLSVIVLLGFIILFFGSFAVSVKLLNF 1437
Query: 1425 QKR 1427
QKR
Sbjct: 1438 QKR 1440
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059296|ref|XP_002299812.1| predicted protein [Populus trichocarpa] gi|222847070|gb|EEE84617.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2256 bits (5847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1124/1432 (78%), Positives = 1254/1432 (87%), Gaps = 8/1432 (0%)
Query: 2 AASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTT 61
AASNGSE+FE++ID RESF+R SNAE+LEEDEDEL+W AI+RLPS K+GNFA+++ +
Sbjct: 3 AASNGSEFFELDID-PVRESFSRPSNAEALEEDEDELVWEAISRLPSNKRGNFAVMRKSP 61
Query: 62 P---RNGGEA-KTETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVP 117
R+GG + E IDVR+L+R +RELVV KALATN QDNYKLLSAIKERLDRVGIEVP
Sbjct: 62 SEYDRSGGYGEREEMIDVRRLDRHKRELVVKKALATNAQDNYKLLSAIKERLDRVGIEVP 121
Query: 118 KVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVV 177
KVEVRF+NL + A VQTGSRALPTL+N RD+ E +LT L +F+ KR LTILND+SGVV
Sbjct: 122 KVEVRFENLNISAKVQTGSRALPTLINVARDLGEGLLTKLGLFRAKRFPLTILNDISGVV 181
Query: 178 KPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTD 237
KPGRMTLLLGPP SGKSTLLLALAGKL +LKKSGNITYNG K D+F+VQRTSAYISQTD
Sbjct: 182 KPGRMTLLLGPPGSGKSTLLLALAGKLAKNLKKSGNITYNGQKFDDFYVQRTSAYISQTD 241
Query: 238 NHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKK 297
NHI ELTVRET DFAA WQGA+EGF Y+ DL RLEKERN+RP+PE+DAFMKASSVGGKK
Sbjct: 242 NHIAELTVRETLDFAACWQGASEGFGGYMEDLVRLEKERNVRPNPEVDAFMKASSVGGKK 301
Query: 298 HSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 357
HS+STDYVLKVLGLD+CSETVVGNDM+RGVSGGQ+KRVTTGEMIVGPRKTLFMDEISTGL
Sbjct: 302 HSISTDYVLKVLGLDVCSETVVGNDMLRGVSGGQRKRVTTGEMIVGPRKTLFMDEISTGL 361
Query: 358 DSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLE 417
DSSTT+QIVKC+ NFVH M+AT+LMALLQP PETFDLFDDL+LLSEG++VYQGPRAEVLE
Sbjct: 362 DSSTTYQIVKCIGNFVHLMEATVLMALLQPAPETFDLFDDLVLLSEGYVVYQGPRAEVLE 421
Query: 418 FFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKAL 477
FFESLGF+LPPRKGVADFLQEVTSKKDQAQYWAD SKPY+FLP SEIAKAFK+S++GK +
Sbjct: 422 FFESLGFKLPPRKGVADFLQEVTSKKDQAQYWADQSKPYLFLPTSEIAKAFKNSKYGKYV 481
Query: 478 KSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVG 537
S LSVP+DKSK H SALSKT+YAVS+WELF+TCF+RE+LLI RH FLYIFRTCQVAFVG
Sbjct: 482 DSELSVPFDKSKSHVSALSKTKYAVSRWELFKTCFSREVLLISRHRFLYIFRTCQVAFVG 541
Query: 538 FVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYF 597
FV CT+FLRTRLHPTDE NGNLYLSCLFF +VHMMFNGFSEL ++I RLPVFYKQRDN F
Sbjct: 542 FVTCTLFLRTRLHPTDEMNGNLYLSCLFFGLVHMMFNGFSELSLLIFRLPVFYKQRDNLF 601
Query: 598 HPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLF 657
HPAW WSVAS+ILR+PYS++EAVVWSCVVY+TVGFAP GRFFR M LLFS+HQMALGLF
Sbjct: 602 HPAWVWSVASFILRLPYSIVEAVVWSCVVYYTVGFAPGAGRFFRFMLLLFSIHQMALGLF 661
Query: 658 RMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVN 717
R M SIARD+VVANTF S++LL +FL+GGFIIPK IKPWW W YW+SPL+Y Q AISVN
Sbjct: 662 RTMGSIARDLVVANTFGSAALLAIFLLGGFIIPKAMIKPWWIWGYWLSPLTYGQRAISVN 721
Query: 718 EFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYL 777
EF A RW KKS G+NT+G N+L+ HSLPS DYWYWIGVG LLLY+LLFN +VT AL YL
Sbjct: 722 EFGAERWIKKSSFGNNTVGNNILYQHSLPSSDYWYWIGVGVLLLYALLFNIIVTWALTYL 781
Query: 778 NPLRKSQVVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVD 837
N L + + + +A + + K KGMILPFQPL MTFHNVNY+VD
Sbjct: 782 N-LINTMCWLITALTKARTVAPADVTQENSDGNDGSKNKGMILPFQPLTMTFHNVNYFVD 840
Query: 838 MPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 897
MP+ M QGI EKKLQLLS VSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD
Sbjct: 841 MPKEMSKQGITEKKLQLLSYVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 900
Query: 898 IKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEV 957
IKISGYPKEQ TFARISGYVEQNDIHSPQ+T+EESL FS++LRL KEVSK QR EFVEEV
Sbjct: 901 IKISGYPKEQRTFARISGYVEQNDIHSPQLTIEESLLFSSSLRLPKEVSKEQRVEFVEEV 960
Query: 958 MRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
MRLVELD+LR ALVG PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 961 MRLVELDTLRQALVGLPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1020
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQA 1077
MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSK MIDYFQ
Sbjct: 1021 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKIMIDYFQG 1080
Query: 1078 LDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGS 1137
+ G+P P GYNPATWMLEVTT EE++G DFA++YR S QYR VE+SI +LS PP GS
Sbjct: 1081 IKGVPPCPDGYNPATWMLEVTTPTVEERVGEDFAELYRKSSQYREVEASILHLSSPPAGS 1140
Query: 1138 EPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKR 1197
EPLKF STY++D LSQF+IC WKQNL+YWRSPQYN VRL FTV AALI+GSVFW+IGSKR
Sbjct: 1141 EPLKFESTYARDALSQFYICLWKQNLVYWRSPQYNGVRLCFTVIAALIIGSVFWNIGSKR 1200
Query: 1198 SSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQ--G 1255
STQ L +VMGALY+SC+FLGVNNASSVQP+VSIERTVFYREKAAGMYSP+ YAVAQ G
Sbjct: 1201 DSTQALSVVMGALYSSCMFLGVNNASSVQPVVSIERTVFYREKAAGMYSPLSYAVAQVTG 1260
Query: 1256 LVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQH 1315
LVE+PY+ VQTI++G IT+FM++FERTA KFFLFLVFMFLTF+YFTFYGMMAVGLTP+QH
Sbjct: 1261 LVEIPYILVQTILYGIITYFMVDFERTAGKFFLFLVFMFLTFTYFTFYGMMAVGLTPSQH 1320
Query: 1316 LAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVE 1375
LAAVISSAFYSLWNL SGFL+P+PSIPGWWIWFYYI P+AWTLRG++ SQLGDVET+IV
Sbjct: 1321 LAAVISSAFYSLWNLLSGFLVPQPSIPGWWIWFYYICPIAWTLRGVICSQLGDVETIIVG 1380
Query: 1376 PTFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
P F GTVK+YLE + G+GP M+G S A LV F LLFF FA SVKFLNFQKR
Sbjct: 1381 PGFEGTVKKYLEVTFGYGPNMIGASIAALVGFCLLFFTVFALSVKFLNFQKR 1432
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434598|ref|XP_002279155.1| PREDICTED: ABC transporter G family member 31-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2222 bits (5759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1086/1427 (76%), Positives = 1238/1427 (86%), Gaps = 12/1427 (0%)
Query: 1 MAASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTT 60
MAASNGSEYFE E+ G+ +SF+R S E +E DEDELMW AI RLPSQK+ NFAL+K +
Sbjct: 1 MAASNGSEYFEFEM-GSRNDSFSR-SRREEVEADEDELMWEAILRLPSQKRTNFALMKRS 58
Query: 61 TPRNGGEAKTETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVE 120
GE +T+TIDVRKL+R R+LVV KA AT +QDN+KLLSAIKERLDRVG+EVPKVE
Sbjct: 59 ASEAEGEQRTDTIDVRKLDRLNRQLVVKKAFATTEQDNFKLLSAIKERLDRVGLEVPKVE 118
Query: 121 VRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPG 180
VRF++L + ADVQTGSRALPTLVN T ++ E +LT + +F+PKR+SLTILN +SGVVKPG
Sbjct: 119 VRFEDLHISADVQTGSRALPTLVNFTLNLMENLLTTVGLFRPKRYSLTILNSISGVVKPG 178
Query: 181 RMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHI 240
RMTLLLGPP +GKSTLLLAL+GKL +LKKSG ITYNG+ +EF +QRTSAY SQTDNHI
Sbjct: 179 RMTLLLGPPGAGKSTLLLALSGKLAGNLKKSGRITYNGHTFNEFCIQRTSAYTSQTDNHI 238
Query: 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSV 300
ELTVRET DFAAR QGANEGFA Y+ DL RLEKER+IRPSPEIDAFMKAS+ GG+ HS+
Sbjct: 239 AELTVRETLDFAARCQGANEGFAGYMTDLARLEKERDIRPSPEIDAFMKASAFGGRTHSI 298
Query: 301 STDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 360
STDYVLKVLGLD+CSET+VGNDM+RGVSGGQK+RVTTGEMIVGPRKTLFMDEISTGLDSS
Sbjct: 299 STDYVLKVLGLDVCSETIVGNDMLRGVSGGQKRRVTTGEMIVGPRKTLFMDEISTGLDSS 358
Query: 361 TTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFE 420
TTFQIVKC+ NFVHQMD+T+LMALLQP PETFDLFDDLLLLSEGH+VYQGPRAEVLEFFE
Sbjct: 359 TTFQIVKCIGNFVHQMDSTVLMALLQPAPETFDLFDDLLLLSEGHIVYQGPRAEVLEFFE 418
Query: 421 SLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSS 480
SLGF+LPPRKGVADFLQEVTSKKDQ QYW+DPS+PYV+LPV +IA+AFK SRFG +++S+
Sbjct: 419 SLGFRLPPRKGVADFLQEVTSKKDQEQYWSDPSRPYVYLPVPKIAEAFKASRFGSSMQSA 478
Query: 481 LSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVA 540
LS P++K HP+ALSKTR+A SK ELFR CFARE+LL+ RH FLYIFRTCQVAFVG +
Sbjct: 479 LSTPFNKFDSHPAALSKTRFATSKSELFRACFARELLLLSRHRFLYIFRTCQVAFVGLIT 538
Query: 541 CTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPA 600
CTM+LRTR+HP +E +G LYLSCLFF +VHMMFNGFSELPIMI RLP+FYKQRDNYFHPA
Sbjct: 539 CTMYLRTRIHPRNEADGELYLSCLFFGLVHMMFNGFSELPIMIARLPIFYKQRDNYFHPA 598
Query: 601 WAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMM 660
WAWSVASWILR+PYSV+E+V+WSCVVY+ VGFAP GRFFR +F+LFS HQMALGLFR+M
Sbjct: 599 WAWSVASWILRLPYSVIESVIWSCVVYYPVGFAPSAGRFFRFLFVLFSTHQMALGLFRVM 658
Query: 661 ASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFA 720
A+ ARDM+VANT S +LL+V L+GGF+IPK IK WW WA+W+SPLSY Q ISVNEF
Sbjct: 659 AASARDMIVANTVCSFALLVVLLLGGFLIPKALIKKWWVWAFWLSPLSYGQRGISVNEFT 718
Query: 721 AARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPL 780
A RW K+SV+ ++TIG+NVL H LP+ DYWYW+GV LL YS+LFN ++TLALAYLNPL
Sbjct: 719 ATRWMKRSVLSNDTIGHNVLQAHKLPTHDYWYWLGVCVLLAYSVLFNYLLTLALAYLNPL 778
Query: 781 RKSQVVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQ 840
+Q V+ +E+ A A E KKKGM LPFQPL MTFHNVNY+VDMP+
Sbjct: 779 TSAQAVLRTDDEDGKPKA----------AEEGSKKKGMSLPFQPLTMTFHNVNYFVDMPK 828
Query: 841 AMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKI 900
M ++GIPEK+LQLLSNVSG+FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDI I
Sbjct: 829 EMTAKGIPEKRLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIMI 888
Query: 901 SGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRL 960
SGYPKEQ TFAR+SGYVEQNDIHSPQVTVEESLWFSA LRL KEVSK Q+ EFV++VM L
Sbjct: 889 SGYPKEQRTFARVSGYVEQNDIHSPQVTVEESLWFSAVLRLPKEVSKEQKLEFVDQVMNL 948
Query: 961 VELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
+ELD LR ALVG PGS+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT
Sbjct: 949 IELDVLRHALVGMPGSTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDG 1080
VRNTVDTGRTVVCTIHQPSIDIFEAFD LLLMKRGGRVIYGGKLG S+ +IDYFQ + G
Sbjct: 1009 VRNTVDTGRTVVCTIHQPSIDIFEAFDALLLMKRGGRVIYGGKLGNQSQNLIDYFQGISG 1068
Query: 1081 IPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPL 1140
IP IP GYNPATWMLE+TT A EE++G DFAD+YR+SE +R VE++IK+ SVPPPGSEPL
Sbjct: 1069 IPPIPDGYNPATWMLEITTPAAEERIGEDFADLYRNSENFREVEAAIKSFSVPPPGSEPL 1128
Query: 1141 KFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSST 1200
F + YSQD ++QF C WKQNL+YWRSP+YNAV++ F+ +ALI GSVFWD+GSKR ST
Sbjct: 1129 HFPTMYSQDAMTQFRTCLWKQNLVYWRSPEYNAVKILFSTISALIFGSVFWDVGSKRDST 1188
Query: 1201 QGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMP 1260
Q L MVMGALYASCLF+GVNN++SVQPIVS+ERTVFYRE+AAGMYSP PYA AQGLVE+P
Sbjct: 1189 QSLVMVMGALYASCLFVGVNNSASVQPIVSVERTVFYRERAAGMYSPFPYAAAQGLVEIP 1248
Query: 1261 YVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVI 1320
Y +QTI+FG ITFFMINFERTARKFFL+LVFMFLTFSYFTFYGMMAVGLTPNQ LAAV+
Sbjct: 1249 YTILQTIVFGVITFFMINFERTARKFFLYLVFMFLTFSYFTFYGMMAVGLTPNQQLAAVV 1308
Query: 1321 SSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTFRG 1380
SSAFYSLWNL SGFLIP+P IPGWWIWFYYI PVAWTLRGI+SSQLGDV + + P F+G
Sbjct: 1309 SSAFYSLWNLLSGFLIPKPRIPGWWIWFYYICPVAWTLRGIISSQLGDVTEITIGPGFKG 1368
Query: 1381 TVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
V +YL + LGFGPGM+GVSA VL+ FS+LFF FA SVK LNFQKR
Sbjct: 1369 AVNKYLNDKLGFGPGMIGVSAVVLICFSVLFFSVFAISVKVLNFQKR 1415
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450812|ref|XP_004143156.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 31-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2222 bits (5757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1081/1492 (72%), Positives = 1245/1492 (83%), Gaps = 71/1492 (4%)
Query: 1 MAASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLK-- 58
MAASNGSEYFE++I+ T SF+R SNAE + DE EL+WAAI RLPSQKQ NFALL
Sbjct: 1 MAASNGSEYFELDIN-TIDSSFSRPSNAELVARDERELLWAAIERLPSQKQSNFALLTRS 59
Query: 59 ----TTTPRNGGEAKTETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGI 114
T++ N G TETIDVRKL+++ RELVV KALAT+DQDN+KLLS IKERLDR +
Sbjct: 60 PSEITSSSDNHGANTTETIDVRKLDKNERELVVKKALATDDQDNFKLLSGIKERLDRAEV 119
Query: 115 EVPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVS 174
+PK+EVRFQNL V A+VQ GSR LPTL+N ++D+ E ILT L+I K KR+ LTILND S
Sbjct: 120 VIPKIEVRFQNLTVSANVQVGSRTLPTLINYSQDIVESILTSLKIMKGKRYPLTILNDTS 179
Query: 175 GVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYIS 234
G+VKPGRMTLLLGPP SG+STLL ALAGKLD +LKK+GNITYNG+ L EF VQRTSAYIS
Sbjct: 180 GIVKPGRMTLLLGPPGSGRSTLLQALAGKLDRNLKKTGNITYNGHHLKEFCVQRTSAYIS 239
Query: 235 QTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVG 294
Q+DNH+ ELTVRET DFAAR QGA+E F+ YI +L +EKE+ IRPSP+IDAFMKASSVG
Sbjct: 240 QSDNHLAELTVRETLDFAARCQGASEAFSEYIKELTHVEKEKRIRPSPDIDAFMKASSVG 299
Query: 295 GKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 354
GKKHSV TDY+LKVLGLD+CSET+VG+DM+RGVSGGQ+KRVT+GEMIVGPRKTLFMDEIS
Sbjct: 300 GKKHSVLTDYILKVLGLDVCSETLVGSDMVRGVSGGQRKRVTSGEMIVGPRKTLFMDEIS 359
Query: 355 TGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAE 414
TGLDSSTTFQIVKCLRNFVHQM+AT+LMALLQP PETF+LFDDL+LLS+G+LVYQGPR+E
Sbjct: 360 TGLDSSTTFQIVKCLRNFVHQMEATVLMALLQPAPETFELFDDLVLLSDGYLVYQGPRSE 419
Query: 415 VLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFG 474
VL FFESLGF+LPPRKGVADFLQEVTSKKDQ QYWAD ++ Y ++ V EIA+AFK S+ G
Sbjct: 420 VLAFFESLGFKLPPRKGVADFLQEVTSKKDQEQYWADSTRAYKYISVPEIAEAFKQSQVG 479
Query: 475 KALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVA 534
++L+S L+ PYDKS HPSAL+KT++A SK ELF+ CF RE+LLI+RHSFLYIFRTCQVA
Sbjct: 480 RSLESDLNPPYDKSSSHPSALAKTKFAASKNELFKACFFRELLLIKRHSFLYIFRTCQVA 539
Query: 535 FVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRD 594
FVGFV CTMFLRTR+HPTDE NGNLYLSCLFF ++HMMFNGFSELP+MI+RLPVFYKQRD
Sbjct: 540 FVGFVTCTMFLRTRIHPTDEINGNLYLSCLFFGLIHMMFNGFSELPLMISRLPVFYKQRD 599
Query: 595 NYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRF------FRHMF--LL 646
N FHP+W+WS++SWILRVPYSVLEAVVWSCVVY+TVGFAP GR+ F H F L
Sbjct: 600 NLFHPSWSWSISSWILRVPYSVLEAVVWSCVVYYTVGFAPSAGRYLIFICLFLHCFEMXL 659
Query: 647 F---------------------SLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMG 685
F S+HQMA+GLFR+MA+IARDMV+ANTF S++LLI+FL+G
Sbjct: 660 FSRASNIFKMIFRFFRFMFLLFSVHQMAIGLFRLMAAIARDMVIANTFGSAALLIIFLLG 719
Query: 686 GFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIGYNVLHTHSL 745
GFIIPKE IKPWWSWA+WVSPLSY Q AISVNEF A RW +KS IG+ TIGYNVLH+H++
Sbjct: 720 GFIIPKEMIKPWWSWAFWVSPLSYGQRAISVNEFTATRWMEKSSIGNGTIGYNVLHSHNM 779
Query: 746 PSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQFEIN 805
PS D WYW+GVG +L+Y++LFNS+VTLAL+ L+PLRK+Q VI + Q ++
Sbjct: 780 PSSDKWYWLGVGVILIYAILFNSLVTLALSKLHPLRKAQTVIPTDANGTDSTTNNQEQV- 838
Query: 806 TTSAPESGKK--KGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFS 863
P S + KGMILPFQPL MTFHNVNY+VD P+ M+ QGIPE +LQLLSNVSGVFS
Sbjct: 839 ----PNSNGRVGKGMILPFQPLTMTFHNVNYFVDTPKEMKQQGIPENRLQLLSNVSGVFS 894
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIH 923
PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEG+IKISG+PKEQ TFARISGYVEQNDIH
Sbjct: 895 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGEIKISGFPKEQRTFARISGYVEQNDIH 954
Query: 924 SPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983
SPQVTVEESL FS++LRL KE+S+ +R EFVEEVM LVELD+LR ALVG PGS+GLSTEQ
Sbjct: 955 SPQVTVEESLQFSSSLRLPKEISEEKRREFVEEVMTLVELDTLRHALVGMPGSTGLSTEQ 1014
Query: 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1043
RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF
Sbjct: 1015 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1074
Query: 1044 EAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATE 1103
EAFDELLLMKRGGRVIYGGKLGVHS+ MIDYF+ ++G+ IP YNPATWMLEVTT A E
Sbjct: 1075 EAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFEGINGVSPIPDAYNPATWMLEVTTPAAE 1134
Query: 1104 EKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFICFWKQNL 1163
+++G DFAD+YR+S Q+R VE SIK SVPP G E LKF STYSQ LSQF IC WKQ L
Sbjct: 1135 QRIGRDFADIYRNSGQFRDVEESIKQYSVPPSGGEALKFDSTYSQGTLSQFIICLWKQRL 1194
Query: 1164 IYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNAS 1223
+YWRSPQYN +RL FT +ALI GSVFWD+G +R+STQ L +VMGALY++CLFLGVNNAS
Sbjct: 1195 VYWRSPQYNVMRLCFTFISALIFGSVFWDVGMRRNSTQELMVVMGALYSACLFLGVNNAS 1254
Query: 1224 SVQPIVSIERTVFYREKAAGMYSPIPYAVA--------------------QGLVEMPYVF 1263
SVQPIVSIERTVFYREKAAGMYSPI YA A QGLVE+PY+
Sbjct: 1255 SVQPIVSIERTVFYREKAAGMYSPIAYAFAQVRKLTVKYXSNFXFVVYSQQGLVEVPYIA 1314
Query: 1264 VQTIIFGFITFFMINFERTA-------RKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHL 1316
QTIIFG IT+ M+NFER KFFL+++FMFLTF+YFTFYGMM VGLTP+QH+
Sbjct: 1315 AQTIIFGVITYLMVNFERNVGNTSEHLGKFFLYILFMFLTFTYFTFYGMMTVGLTPSQHM 1374
Query: 1317 AAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEP 1376
AAV+SSAFYSLWNL SGFL+P+PSIPGWWIWFYYI P++WTLRGI++SQLGDVET+IV P
Sbjct: 1375 AAVVSSAFYSLWNLLSGFLVPKPSIPGWWIWFYYICPISWTLRGIITSQLGDVETIIVGP 1434
Query: 1377 TFRGTVKEYLEESLGFGPG-MVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
F+G+VK+YLE SLG+G M+GVS VLVAF LLFF FA SVK +NFQ+R
Sbjct: 1435 GFKGSVKQYLEVSLGYGGNDMIGVSVVVLVAFILLFFTVFAVSVKLINFQRR 1486
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357490693|ref|XP_003615634.1| Pleiotropic drug resistance ABC transporter family protein [Medicago truncatula] gi|355516969|gb|AES98592.1| Pleiotropic drug resistance ABC transporter family protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2221 bits (5754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1085/1492 (72%), Positives = 1255/1492 (84%), Gaps = 70/1492 (4%)
Query: 1 MAASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTT 60
MAAS+GSEYFE+ G+ ESF RASNAE +EEDE+EL WAA++RLPSQK+ NFA+L+ +
Sbjct: 1 MAASDGSEYFEIGSIGS--ESFARASNAEWVEEDEEELHWAALSRLPSQKRINFAVLRAS 58
Query: 61 TPR-----NGGEAKTETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIE 115
+ R N GE +DVRKLNR RELVV KALATNDQDNYKLLSA+KERL+R GIE
Sbjct: 59 SSRQPSKENAGE---NLVDVRKLNRFNRELVVKKALATNDQDNYKLLSAVKERLNRAGIE 115
Query: 116 VPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSG 175
VPK+EVR+ NL V ADV GSRALPTL N TRD E ILT L++F+ KRHSLTIL++VSG
Sbjct: 116 VPKIEVRYTNLTVSADVLIGSRALPTLFNYTRDALEGILTSLKLFRTKRHSLTILDNVSG 175
Query: 176 VVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQ 235
V+KPGRMTLLLGPP SGKS+LL+ALAGKLD +LKK+G+ITYNG+++DEF+V+RTSAYISQ
Sbjct: 176 VIKPGRMTLLLGPPGSGKSSLLMALAGKLDKNLKKTGSITYNGHEIDEFYVRRTSAYISQ 235
Query: 236 TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGG 295
TDNHIPELTVRET DF AR QGA EGFA Y DL LE ERNIRPSPEIDAFMKASSVGG
Sbjct: 236 TDNHIPELTVRETLDFGARCQGAEEGFAEYTKDLGHLENERNIRPSPEIDAFMKASSVGG 295
Query: 296 KKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 355
KKHSV+TDY+LKVLGLD+CS+T+VGN+M RGVSGGQ+KRVTTGEMIVGPRKTLFMDEIST
Sbjct: 296 KKHSVNTDYILKVLGLDVCSDTIVGNEMTRGVSGGQRKRVTTGEMIVGPRKTLFMDEIST 355
Query: 356 GLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEV 415
GLDSSTT+QIVKC++NFVHQM+AT+LMALLQP PETF+LFDDL+LLSEGH++Y+GPR +V
Sbjct: 356 GLDSSTTYQIVKCIKNFVHQMEATVLMALLQPAPETFELFDDLVLLSEGHVIYEGPREDV 415
Query: 416 LEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGK 475
LEFFES+GFQLPPRKG+ADFLQEVTSKKDQAQYWADPSKPY F+ V EIA+AF+ SRFG+
Sbjct: 416 LEFFESIGFQLPPRKGIADFLQEVTSKKDQAQYWADPSKPYEFISVREIAEAFRSSRFGR 475
Query: 476 ALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAF 535
+ S + PYDKSKCHPSAL++ +YAVSK E+ + CF RE+LLI+RHSFLYIFRT QVAF
Sbjct: 476 YMDSLQAHPYDKSKCHPSALAQKKYAVSKLEVTKACFNREVLLIKRHSFLYIFRTFQVAF 535
Query: 536 VGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDN 595
VGFV CT+FLRTRLHPTDE G+LYLS LFF +VHMMFNGFSELP+MI+RLPVFYKQRDN
Sbjct: 536 VGFVTCTVFLRTRLHPTDESYGSLYLSALFFGLVHMMFNGFSELPLMISRLPVFYKQRDN 595
Query: 596 YFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETG------------------ 637
F+PAWAWS SWILRVPYSV+EA++W+ VVY++VGFAP G
Sbjct: 596 LFYPAWAWSFTSWILRVPYSVIEALIWAAVVYYSVGFAPAAGRYLYFIAFFCSKYSFIPS 655
Query: 638 ---------RFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFI 688
RFFR++F+LF +HQMALGLF MMASIARDMV+ANTF S++LLI+FL+GGFI
Sbjct: 656 MSLLFVKCFRFFRYIFILFVVHQMALGLFGMMASIARDMVLANTFGSAALLIIFLLGGFI 715
Query: 689 IPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSG 748
+PK IKPWW W YW+SPL+Y Q AI++NEF A+RW KKS IG+NT+GYN+L +++LP
Sbjct: 716 VPKGMIKPWWIWGYWLSPLTYGQRAITINEFTASRWMKKSAIGNNTVGYNILVSNNLPVD 775
Query: 749 DYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVI----DDKEENSVKMAKQQFEI 804
DYWYW G G L+LY++ FNS+VTLALAYLNPL+K++ +I D ++NSV +
Sbjct: 776 DYWYWAGAGILILYAIFFNSMVTLALAYLNPLQKARTIIPLDDDGSDKNSVSNQVSEMST 835
Query: 805 NTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSP 864
N+ S +G KGMILPFQPL MTFHNVNYYVDMP+ +R+QGI E KLQLLS+VSGVFSP
Sbjct: 836 NSRSRRGNGNTKGMILPFQPLTMTFHNVNYYVDMPKEIRNQGIAETKLQLLSDVSGVFSP 895
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHS 924
GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ TFARISGYVEQNDIHS
Sbjct: 896 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQQTFARISGYVEQNDIHS 955
Query: 925 PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984
PQVT+EESLWFSA+LRL KE+S ++R EFVE+VM+LVELDSLR ALVG PGSSGLSTEQR
Sbjct: 956 PQVTIEESLWFSASLRLPKEISIDKRREFVEQVMKLVELDSLRYALVGMPGSSGLSTEQR 1015
Query: 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1044
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE
Sbjct: 1016 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1075
Query: 1045 AFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATEE 1104
AFDELLLMKRGGRVIYGGK+GVHS+T+IDYFQ + G+P IPSGYNPATW+LEVTT A EE
Sbjct: 1076 AFDELLLMKRGGRVIYGGKIGVHSQTLIDYFQGITGVPPIPSGYNPATWVLEVTTPAVEE 1135
Query: 1105 KLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFICFWKQNLI 1164
++G DFA++Y++S Q+R VE+SI PP G +PLKF + YSQ+PLSQF++C WKQNL+
Sbjct: 1136 RIGSDFAEIYKNSAQFRGVEASILEFEHPPAGFQPLKFDTIYSQNPLSQFYLCLWKQNLV 1195
Query: 1165 YWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASS 1224
YWRSP YNA+R+ FT +ALI GSVFWDIGSKRSSTQ LF++MGALY++CLFLGVNNASS
Sbjct: 1196 YWRSPSYNAMRMYFTTISALIFGSVFWDIGSKRSSTQELFVLMGALYSACLFLGVNNASS 1255
Query: 1225 VQPIVSIERTVFYREKAAGMYSPIPYAVAQ----------------GLVEMPYVFVQTII 1268
VQPIVSIERTVFYREKAAGMY+P+ Y AQ GLVE+PY+ VQTI+
Sbjct: 1256 VQPIVSIERTVFYREKAAGMYTPLAYGAAQVGLTTVEIISPTYLYHGLVEIPYIAVQTIV 1315
Query: 1269 FGFITFFMINFERTAR--------KFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVI 1320
FG IT+FM+NFE+TA KF L+L+FMFLTF+YFTFYGMMAVGLTP+Q AAVI
Sbjct: 1316 FGLITYFMVNFEKTAGNTSTSHIWKFLLYLLFMFLTFTYFTFYGMMAVGLTPSQQFAAVI 1375
Query: 1321 SSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTFRG 1380
SSAFYSLWNL SGFLIP+ IPGWWIWFYYI PV WTLRGI++SQLGDVET IV P F G
Sbjct: 1376 SSAFYSLWNLLSGFLIPKSHIPGWWIWFYYICPVQWTLRGIITSQLGDVETRIVGPGFEG 1435
Query: 1381 TVKEYLEESLGF-----GPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
TVKEYL +LG+ G VG+S VL+AF L+FFGSFA SVK LNFQKR
Sbjct: 1436 TVKEYLSVTLGYDQKINGISSVGLSVIVLIAFILVFFGSFAASVKLLNFQKR 1487
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745902|emb|CBI15958.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2127 bits (5511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1066/1489 (71%), Positives = 1219/1489 (81%), Gaps = 84/1489 (5%)
Query: 16 GTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDV 75
G+ +SF+R S E +E DEDELMW AI RLPSQK+ NFAL+K + GE +T+TIDV
Sbjct: 2 GSRNDSFSR-SRREEVEADEDELMWEAILRLPSQKRTNFALMKRSASEAEGEQRTDTIDV 60
Query: 76 RKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTG 135
RKL+R R+LVV KA AT +QDN+KLLSAIKERLDRVG+EVPKVEVRF++L + ADVQTG
Sbjct: 61 RKLDRLNRQLVVKKAFATTEQDNFKLLSAIKERLDRVGLEVPKVEVRFEDLHISADVQTG 120
Query: 136 SRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKST 195
SRALPTLVN T ++ E +LT + +F+PKR+SLTILN +SGVVKPGRMTLLLGPP +GKST
Sbjct: 121 SRALPTLVNFTLNLMENLLTTVGLFRPKRYSLTILNSISGVVKPGRMTLLLGPPGAGKST 180
Query: 196 LLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARW 255
LLLAL+GKL +LKKSG ITYNG+ +EF +QRTSAY SQTDNHI ELTVRET DFAAR
Sbjct: 181 LLLALSGKLAGNLKKSGRITYNGHTFNEFCIQRTSAYTSQTDNHIAELTVRETLDFAARC 240
Query: 256 QGANEGFAA----------------YI----------------------------NDLNR 271
QGANEGFA Y+ +DL
Sbjct: 241 QGANEGFAGLFLQLFYYCCFSTYWGYVMVLIITFGFTGETNGYTMLLHSRILISKHDLEL 300
Query: 272 L-------EKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324
L KER+IRPSPEIDAFMKAS+ GG+ HS+STDYVLKVLGLD+CSET+VGNDM+
Sbjct: 301 LCIFLMLFNKERDIRPSPEIDAFMKASAFGGRTHSISTDYVLKVLGLDVCSETIVGNDML 360
Query: 325 RGVSGGQKKRVTTG--------------------------EMIVGPRKTLFMDEISTGLD 358
RGVSGGQK+RVTT EMIVGPRKTLFMDEISTGLD
Sbjct: 361 RGVSGGQKRRVTTAIITESLVPCITMGMADPCTDRDTRHCEMIVGPRKTLFMDEISTGLD 420
Query: 359 SSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEF 418
SSTTFQIVKC+ NFVHQMD+T+LMALLQP PETFDLFDDLLLLSEGH+VYQGPRAEVLEF
Sbjct: 421 SSTTFQIVKCIGNFVHQMDSTVLMALLQPAPETFDLFDDLLLLSEGHIVYQGPRAEVLEF 480
Query: 419 FESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALK 478
FESLGF+LPPRKGVADFLQEVTSKKDQ QYW+DPS+PYV+LPV +IA+AFK SRFG +++
Sbjct: 481 FESLGFRLPPRKGVADFLQEVTSKKDQEQYWSDPSRPYVYLPVPKIAEAFKASRFGSSMQ 540
Query: 479 SSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGF 538
S+LS P++K HP+ALSKTR+A SK ELFR CFARE+LL+ RH FLYIFRTCQVAFVG
Sbjct: 541 SALSTPFNKFDSHPAALSKTRFATSKSELFRACFARELLLLSRHRFLYIFRTCQVAFVGL 600
Query: 539 VACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFH 598
+ CTM+LRTR+HP +E +G LYLSCLFF +VHMMFNGFSELPIMI RLP+FYKQRDNYFH
Sbjct: 601 ITCTMYLRTRIHPRNEADGELYLSCLFFGLVHMMFNGFSELPIMIARLPIFYKQRDNYFH 660
Query: 599 PAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFR 658
PAWAWSVASWILR+PYSV+E+V+WSCVVY+ VGFAP GRFFR +F+LFS HQMALGLFR
Sbjct: 661 PAWAWSVASWILRLPYSVIESVIWSCVVYYPVGFAPSAGRFFRFLFVLFSTHQMALGLFR 720
Query: 659 MMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNE 718
+MA+ ARDM+VANT S +LL+V L+GGF+IPK IK WW WA+W+SPLSY Q ISVNE
Sbjct: 721 VMAASARDMIVANTVCSFALLVVLLLGGFLIPKALIKKWWVWAFWLSPLSYGQRGISVNE 780
Query: 719 FAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLN 778
F A RW K+SV+ ++TIG+NVL H LP+ DYWYW+GV LL YS+LFN ++TLALAYLN
Sbjct: 781 FTATRWMKRSVLSNDTIGHNVLQAHKLPTHDYWYWLGVCVLLAYSVLFNYLLTLALAYLN 840
Query: 779 PLRKSQVVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDM 838
R+S+ + ++ S E KKKGM LPFQPL MTFHNVNY+VDM
Sbjct: 841 --RESEKL---SCFAYSCLSLLLNSYLNPSQAEGSKKKGMSLPFQPLTMTFHNVNYFVDM 895
Query: 839 PQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDI 898
P+ M ++GIPEK+LQLLSNVSG+FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDI
Sbjct: 896 PKEMTAKGIPEKRLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDI 955
Query: 899 KISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVM 958
ISGYPKEQ TFAR+SGYVEQNDIHSPQVTVEESLWFSA LRL KEVSK Q+ FV++VM
Sbjct: 956 MISGYPKEQRTFARVSGYVEQNDIHSPQVTVEESLWFSAVLRLPKEVSKEQKL-FVDQVM 1014
Query: 959 RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
L+ELD LR ALVG PGS+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM
Sbjct: 1015 NLIELDVLRHALVGMPGSTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1074
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQAL 1078
RTVRNTVDTGRTVVCTIHQPSIDIFEAFD LLLMKRGGRVIYGGKLG S+ +IDYFQ +
Sbjct: 1075 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDALLLMKRGGRVIYGGKLGNQSQNLIDYFQGI 1134
Query: 1079 DGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSE 1138
GIP IP GYNPATWMLE+TT A EE++G DFAD+YR+SE +R VE++IK+ SVPPPGSE
Sbjct: 1135 SGIPPIPDGYNPATWMLEITTPAAEERIGEDFADLYRNSENFREVEAAIKSFSVPPPGSE 1194
Query: 1139 PLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRS 1198
PL F + YSQD ++QF C WKQNL+YWRSP+YNAV++ F+ +ALI GSVFWD+GSKR
Sbjct: 1195 PLHFPTMYSQDAMTQFRTCLWKQNLVYWRSPEYNAVKILFSTISALIFGSVFWDVGSKRD 1254
Query: 1199 STQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVE 1258
STQ L MVMGALYASCLF+GVNN++SVQPIVS+ERTVFYRE+AAGMYSP PYA AQGLVE
Sbjct: 1255 STQSLVMVMGALYASCLFVGVNNSASVQPIVSVERTVFYRERAAGMYSPFPYAAAQGLVE 1314
Query: 1259 MPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAA 1318
+PY +QTI+FG ITFFMINFERTARKFFL+LVFMFLTFSYFTFYGMMAVGLTPNQ LAA
Sbjct: 1315 IPYTILQTIVFGVITFFMINFERTARKFFLYLVFMFLTFSYFTFYGMMAVGLTPNQQLAA 1374
Query: 1319 VISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTF 1378
V+SSAFYSLWNL SGFLIP+P IPGWWIWFYYI PVAWTLRGI+SSQLGDV + + P F
Sbjct: 1375 VVSSAFYSLWNLLSGFLIPKPRIPGWWIWFYYICPVAWTLRGIISSQLGDVTEITIGPGF 1434
Query: 1379 RGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
+G V +YL + LGFGPGM+GVSA VL+ FS+LFF FA SVK LNFQKR
Sbjct: 1435 KGAVNKYLNDKLGFGPGMIGVSAVVLICFSVLFFSVFAISVKVLNFQKR 1483
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1427 | ||||||
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.992 | 0.993 | 0.720 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.979 | 0.969 | 0.545 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.974 | 0.981 | 0.542 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.978 | 0.981 | 0.532 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.978 | 0.960 | 0.523 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.974 | 0.957 | 0.519 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.982 | 0.987 | 0.500 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.978 | 0.962 | 0.479 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.978 | 0.988 | 0.480 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.557 | 0.541 | 0.500 | 0.0 |
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5422 (1913.7 bits), Expect = 0., P = 0.
Identities = 1032/1433 (72%), Positives = 1190/1433 (83%)
Query: 2 AASNGSEYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNF-ALLKT- 59
AASNGSEYFE +++ T RESF R SNAE++E+DE++L WAAI RLPSQ+QG A+L+
Sbjct: 3 AASNGSEYFEFDVE-TGRESFARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRS 61
Query: 60 -TTPRNGGEAK---TETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIE 115
T + G A +TIDV+KL+R+ RE++V +ALAT+DQDN+KLLSAIKERLDRVG+E
Sbjct: 62 QTQTQTSGYADGNVVQTIDVKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGME 121
Query: 116 VPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSG 175
VPK+EVRF+NL + ADVQ G+RALPTLVN +RD FER L+ LRI KP++H L IL D+SG
Sbjct: 122 VPKIEVRFENLNIEADVQAGTRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISG 181
Query: 176 VVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQ 235
++KPGRMTLLLGPP SGKSTLLLALAGKLD SLKK+GNITYNG L++FHV+RTSAYISQ
Sbjct: 182 IIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQ 241
Query: 236 TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGG 295
TDNHI ELTVRET DFAAR QGA+EGFA Y+ DL RLEKER IRPS EIDAFMKA+SV G
Sbjct: 242 TDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKG 301
Query: 296 KKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 355
+KHSVSTDYVLKVLGLD+CS+T+VGNDM+RGVSGGQ+KRVTTGEM VGPRKTLFMDEIST
Sbjct: 302 EKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEIST 361
Query: 356 GLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSEGHLVYQGPRAEV 415
GLDSSTTFQIVKC+RNFVH MDAT+LMALLQP PET SEG++VYQGPR +V
Sbjct: 362 GLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDV 421
Query: 416 LEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGK 475
+ FFESLGF+LPPRKGVADFLQEVTSKKDQAQYWADPSKPY F+PVS+IA AF++S++G
Sbjct: 422 IAFFESLGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGH 481
Query: 476 ALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAF 535
A S L+ P+DK PSAL +T++A+S WE + CF RE+LLI+RH FLY FRTCQV F
Sbjct: 482 AADSKLAAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGF 541
Query: 536 VGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDN 595
VG V T+FL+TRLHPT E+ GN YLSCLFF +VHMMFNGFSELP+MI+RLPVFYKQRDN
Sbjct: 542 VGLVTATVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDN 601
Query: 596 YFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALG 655
FHPAW+WS+ASW+LRVPYSVLEAVVWS VVYFTVG AP GRFFR+M LLFS+HQMALG
Sbjct: 602 SFHPAWSWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALG 661
Query: 656 LFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAIS 715
LFRMMAS+ARDMV+ANTF S+++LIVFL+GGF+IPK IKPWW W +WVSPLSY Q AI+
Sbjct: 662 LFRMMASLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIA 721
Query: 716 VNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALA 775
VNEF A RW S I D TIG N+L S P+ DYWYWIG+ L+ Y++LFN+VVTLALA
Sbjct: 722 VNEFTATRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALA 781
Query: 776 YLNPLRKSQ-VVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNY 834
YLNPLRK++ VV+DD E + +A I+ +KKGMILPF+PL MTFHNVNY
Sbjct: 782 YLNPLRKARAVVLDDPNEETALVADANQVIS--------EKKGMILPFKPLTMTFHNVNY 833
Query: 835 YVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 894
YVDMP+ MRSQG+PE +LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY
Sbjct: 834 YVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYT 893
Query: 895 EGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFV 954
EGDI+ISG+PKEQ TFARISGYVEQNDIHSPQVTVEESLWFSA+LRL KE++K Q+ EFV
Sbjct: 894 EGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFV 953
Query: 955 EEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
E+VMRLVELD+LR ALVG PG++GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 954 EQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1013
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDY 1074
AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG+VIYGGKLG HS+ ++DY
Sbjct: 1014 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDY 1073
Query: 1075 FQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPP 1134
FQ ++G+P I SGYNPATWMLEVTT A EEK ++FAD+Y+ S+Q+R VE++IK LSVPP
Sbjct: 1074 FQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPP 1133
Query: 1135 PGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIG 1194
GSEP+ F+S YSQ+ LSQF +C WKQNL+YWRSP+YN VRL FT AA ILG+VFWDIG
Sbjct: 1134 EGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIG 1193
Query: 1195 SKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQ 1254
SKR+S+Q L VMGALY++CLFLGV+NASSVQPIVSIERTVFYREKAAGMY+PIPYA AQ
Sbjct: 1194 SKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQ 1253
Query: 1255 GLVEMPYVFVQTXXXXXXXXXXXXXERTARKXXXXXXXXXXXXSYFTFYGMMAVGLTPNQ 1314
GLVE+PY+ QT ERT K +YFTFYGMMAVGLTPNQ
Sbjct: 1254 GLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQ 1313
Query: 1315 HLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV 1374
HLAAVISSAFYSLWNL SGFL+ +P IP WWIWFYYI PVAWTL+G++ SQLGDVE+MI
Sbjct: 1314 HLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMIN 1373
Query: 1375 EPTFRGTVKEYLEESLGFGPGMXXXXXXXXXXXXXXXXXXXXXXXKFLNFQKR 1427
EP F GTVKE++E G+ P M K+LNFQ+R
Sbjct: 1374 EPLFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3974 (1404.0 bits), Expect = 0., P = 0.
Identities = 771/1414 (54%), Positives = 1002/1414 (70%)
Query: 23 TRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRN--GGEAKTETIDVRKLNR 80
T + +S+ EDE+ L WA+I +LP+ + +L+ + G + + +DV KL+
Sbjct: 36 TSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDVTKLDG 95
Query: 81 SRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRALP 140
R+ + +QDN ++L+ ++ R+DRVGI++P VEVR+ +L V AD TG R+LP
Sbjct: 96 EERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSLP 155
Query: 141 TLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLAL 200
+L+NA R++ E L + I K+ LTIL DVSG+VKP RMTLLLGPP+SGK+TLLLAL
Sbjct: 156 SLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLAL 215
Query: 201 AGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANE 260
AGKLD SL SG +TYNGY+L+EF +TSAYISQ D H+ +TV+ET DF+AR QG
Sbjct: 216 AGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGT 275
Query: 261 GFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320
+ +N+L R EK+ I P ++D FMKAS+ G K S+ TDY LK+LGLD+C +T+VG
Sbjct: 276 RYDL-LNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVG 334
Query: 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATI 380
+DM+RG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSSTTFQIVKCL+ VH +AT+
Sbjct: 335 DDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATV 394
Query: 381 LMALLQPPPETXXXXXXXXXXSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVT 440
L++LLQP PET SEG +VYQGPR +LEFFES GF+ P RKG ADFLQEVT
Sbjct: 395 LISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVT 454
Query: 441 SKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRY 500
SKKDQ QYW DP++PY ++PVSE A +FK G L + LSVPYDKSK H +AL +Y
Sbjct: 455 SKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKY 514
Query: 501 AVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLY 560
++ K EL ++C+ +E +L++R+SF Y+F+T Q+ + + T++LRT +H +E + N+Y
Sbjct: 515 SIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIY 574
Query: 561 LSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAV 620
+ L FA++ MFNG +E+ + I RLPVFYKQRD FHP W +++ +++L +P S+ E+
Sbjct: 575 VGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFEST 634
Query: 621 VWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLI 680
W V Y+++G+AP+ RFF+ ++F + QMA G+FR +AS R M +ANT LL+
Sbjct: 635 AWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLV 694
Query: 681 VFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNT--IGYN 738
VFL GGF++P+ I WW WAYW+SPLSYA +AI+VNE A RW K + G++T +G +
Sbjct: 695 VFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNK-MSGNSTTRLGTS 753
Query: 739 VLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMA 798
VL+ + WYWIGVG LL ++++FN TLAL YL+PL K+Q ++ KEE+ + A
Sbjct: 754 VLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILP-KEED--EEA 810
Query: 799 KQQFEINTTSAPES-GKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSN 857
K + N + ES KKGM+LPF PLAM+F +V Y+VDMP MR QG+ E +LQLL
Sbjct: 811 KGKAGSNKETEMESVSAKKGMVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRLQLLKG 870
Query: 858 VSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYV 917
V+ F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYIEGD+++SG+PK+Q TFARISGY
Sbjct: 871 VTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISGYC 930
Query: 918 EQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977
EQ DIHSPQVTV ESL FSA LRL+KEVSK + FV++VM LVEL LRDA+VG PG +
Sbjct: 931 EQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPGVT 990
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQ
Sbjct: 991 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQ 1050
Query: 1038 PSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEV 1097
PSIDIFEAFDELLLMKRGG VIY G LG +S +++YF++ G+P IP YNPATWMLE
Sbjct: 1051 PSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLEA 1110
Query: 1098 TTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFIC 1157
++ A E KLGVDFA++Y++S + ++ ++ LSVPP G+ L F++ +SQ+ QF C
Sbjct: 1111 SSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSC 1170
Query: 1158 FWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFL 1217
WKQ YWRSP YN VR FT+A +L++GSVFW IG KRS+ Q L MV+GA+YA+ +F+
Sbjct: 1171 LWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYAAVVFV 1230
Query: 1218 GVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTXXXXXXXXXXX 1277
G+NN S+VQP+V++ERTVFYREKAAGMYS IPYA++Q E+PYV +QT
Sbjct: 1231 GINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLIIYSMV 1290
Query: 1278 XXERTARKXXXXXXXXXXXXSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIP 1337
E A K Y+T+YGMM V LTPNQ +A++ +SAFY ++NL SGF IP
Sbjct: 1291 GFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIP 1350
Query: 1338 RPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV----EPTFRGTVKEYLEESLGFG 1393
RP IP WW+W+Y+I PVAWT+ G+++SQ GDVET I P TVK+Y+++ GF
Sbjct: 1351 RPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGL--TVKQYIKDQYGFE 1408
Query: 1394 PGMXXXXXXXXXXXXXXXXXXXXXXXKFLNFQKR 1427
K LNFQ R
Sbjct: 1409 SDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3925 (1386.7 bits), Expect = 0., P = 0.
Identities = 765/1409 (54%), Positives = 989/1409 (70%)
Query: 22 FTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVRKLNRS 81
F+R S + + DE+ L WAA+ +LP+ FA L+TT + +DV KL
Sbjct: 24 FSRRSGSTIDDHDEEALKWAALEKLPT-----FARLRTTIIH----PHEDLVDVTKLGVD 74
Query: 82 RRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRALPT 141
R+ + ++DN K L + R+DRV I++P VEVRF+ + + A+ G RALPT
Sbjct: 75 DRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPT 134
Query: 142 LVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALA 201
L NA ++ ER L L K +TIL DVSG++KP RMTLLLGPP+SGK+TLLLALA
Sbjct: 135 LPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 194
Query: 202 GKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEG 261
GKLD SLK +G +TYNG+ L+EF Q+TSAYISQ D H+ +TV+ET DF+AR QG
Sbjct: 195 GKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTR 254
Query: 262 FAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321
+ +++L R EK+ I P PE+D FMK+ + G K S+ TDY L++LGLD+C +TVVG+
Sbjct: 255 YDL-LSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGD 313
Query: 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
+MIRG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSSTT+QIVKCL+ V DAT+L
Sbjct: 314 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVL 373
Query: 382 MALLQPPPETXXXXXXXXXXSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTS 441
M+LLQP PET SEG +VYQGPR VL FFE+ GF+ P RKG ADFLQEVTS
Sbjct: 374 MSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTS 433
Query: 442 KKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYA 501
+KDQ QYWAD KPY ++ VSE +K F+ G L+ LSVPYD+ K HP++L +++
Sbjct: 434 RKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHS 493
Query: 502 VSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYL 561
V K +LF+ C+ RE+LL++R++F YI +T Q+ + +A T++LRT + +E +G +Y+
Sbjct: 494 VPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYI 553
Query: 562 SCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVV 621
L F+++ MFNGF+EL +MI RLPVFYKQRD FHP W +S+ +++L +P S+ E+VV
Sbjct: 554 GALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVV 613
Query: 622 WSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIV 681
W + Y+ +GFAPE RF +H+ ++F QMA G+FR +A+ R M++ANT + +L++
Sbjct: 614 WVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLL 673
Query: 682 FLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARW-KKKSVIGDNTIGYNVL 740
FL+GGFI+P+ I WW WAYWVSP++Y A++VNE A RW + S ++G VL
Sbjct: 674 FLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPSSDNSTSLGLAVL 733
Query: 741 HTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQ 800
+ + WYWIGVG +L +++LFN +VTLAL +LNPL K Q V+ KE A+
Sbjct: 734 EIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVS-KENTEENRAE- 791
Query: 801 QFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSG 860
N + + K+GM+LPF PL M+F NVNYYVDMP+ M+ QG+ + KLQLL V+G
Sbjct: 792 ----NGSKSKSIDVKRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTG 847
Query: 861 VFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQN 920
VF PGVLTAL+G SGAGKTTLMDVLAGRKTGGYIEGDI+ISG+PK Q TFARISGY EQN
Sbjct: 848 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQN 907
Query: 921 DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980
DIHSPQVTV+ESL +SA LRL KEV+K ++ FV+EVM LVEL+SL+DA+VG PG +GLS
Sbjct: 908 DIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLS 967
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI
Sbjct: 968 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1027
Query: 1041 DIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTA 1100
DIFEAFDELLL+KRGG+VIY G LG +S +I+YFQA+ G+P I YNPATWMLEV++
Sbjct: 1028 DIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSM 1087
Query: 1101 ATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFICFWK 1160
A E KL +DFA+ Y++S Y+ ++ +K LS PP G+ L FS+ +SQ L QF C WK
Sbjct: 1088 AAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWK 1147
Query: 1161 QNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVN 1220
Q + YWR+P YN R FT+AAA++LGS+FW +G+KR + L V+GA+YA+ LF+GVN
Sbjct: 1148 QWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAVLFVGVN 1207
Query: 1221 NASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTXXXXXXXXXXXXXE 1280
N+SSVQP++++ER+VFYRE+AA MYS +PYA+AQ + E+PYV +QT E
Sbjct: 1208 NSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFE 1267
Query: 1281 RTARKXXXXXXXXXXXXSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPS 1340
T K YFT+YGMM V LTPNQ +AAV + AFY L+NL SGF+IPRP
Sbjct: 1268 WTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPR 1327
Query: 1341 IPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTFRG--TVKEYLEESLGFGPGMXX 1398
IP WWIW+Y+I PVAWT+ G++ SQ GDVE I P T+K Y+E G+
Sbjct: 1328 IPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMI 1387
Query: 1399 XXXXXXXXXXXXXXXXXXXXXKFLNFQKR 1427
+ LNFQ+R
Sbjct: 1388 PIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3859 (1363.5 bits), Expect = 0., P = 0.
Identities = 753/1414 (53%), Positives = 979/1414 (69%)
Query: 17 TARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVR 76
+ RE F+R+S E +DE+ L WAA+ +LP+ + +L T GG ID++
Sbjct: 24 SGREIFSRSSREE---DDEEALRWAALEKLPTFDRLRKGIL--TASHAGGPINE--IDIQ 76
Query: 77 KLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGS 136
KL + ++ + + D ++ KLL +K+R+DRVGI++P +EVRF +LKV A+V G
Sbjct: 77 KLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGG 136
Query: 137 RALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTL 196
RALPT VN + ++ L L + ++ TILNDVSG+VKPGRM LLLGPP+SGK+TL
Sbjct: 137 RALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTL 196
Query: 197 LLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQ 256
LLALAGKLD LK++G +TYNG+ ++EF QRT+AYI Q D HI E+TVRETF +AAR+Q
Sbjct: 197 LLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQ 256
Query: 257 GANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316
G + + +L R EKE NI+P P+ID FMKA S G+K +V TDY+LK+LGL++C++
Sbjct: 257 GVGSRYDM-LTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCAD 315
Query: 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQM 376
T+VG+DM+RG+SGGQKKRVTTGEM+VGP + LFMDEISTGLDSSTT+QIV LRN+VH
Sbjct: 316 TMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIF 375
Query: 377 DATILMALLQPPPETXXXXXXXXXXSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFL 436
+ T L++LLQP PET +EG ++Y+GPR V+EFFE++GF+ PPRKGVADFL
Sbjct: 376 NGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFL 435
Query: 437 QEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALS 496
QEVTSKKDQ QYWA +PY F+ V E A+AF+ G+ + L++P+DK+K HP+AL+
Sbjct: 436 QEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALT 495
Query: 497 KTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKN 556
+Y V EL +T F+RE LL++R+SF+Y F+ Q+ + F+ T+F RT + E +
Sbjct: 496 TKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVD 555
Query: 557 GNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSV 616
G+LY LFF ++ +MFNG SEL + I +LPVFYKQRD F+PAW +S+ W+L++P S
Sbjct: 556 GSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISF 615
Query: 617 LEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASS 676
+EA + + + Y+ +GF P GR F+ LL ++QMA LF+M+A++ R+M+VANTF +
Sbjct: 616 MEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAF 675
Query: 677 SLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIG 736
++L+ F +GG ++ ++ IK WW W YW+SP+ Y Q+AI NEF W + T+G
Sbjct: 676 AMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLG 735
Query: 737 YNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDK---EEN 793
L + YWYWIG GALL + +LFN TLAL +LN L K Q VI ++ +E
Sbjct: 736 VTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDET 795
Query: 794 SVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQ 853
++ A+ + + + KK+GM+LPF+P ++TF NV Y VDMPQ M QG E +L
Sbjct: 796 ELQSARSEGVVEAGA----NKKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLV 851
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
LL V+G F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYI+G+I ISGYPK Q TFARI
Sbjct: 852 LLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARI 911
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
SGY EQ DIHSP VTV ESL +SA LRL KEV KN+R F+EEVM LVEL LR ALVG
Sbjct: 912 SGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGL 971
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
PG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC
Sbjct: 972 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1031
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATW 1093
TIHQPSIDIFEAFDEL L+KRGG IY G LG S +I+YF+++ GI I GYNPATW
Sbjct: 1032 TIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATW 1091
Query: 1094 MLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQ 1153
MLEV+T + E LGVDFA VY++SE Y+ + IK LS P PGS+ L F + YSQ L+Q
Sbjct: 1092 MLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQ 1151
Query: 1154 FFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYAS 1213
WKQ+ YWR+P Y AVR FT+ AL+ G++FWD+G K + Q L MG++Y +
Sbjct: 1152 CMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTA 1211
Query: 1214 CLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTXXXXXXX 1273
LFLG+ NA+SVQP+V++ERTVFYRE+AAGMYS +PYA AQ +E+PYV VQ
Sbjct: 1212 VLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIV 1271
Query: 1274 XXXXXXERTARKXXXXXXXXXXXXSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSG 1333
E TA K FTFYGMMAV +TPN H+A+V+SSAFY +WNL SG
Sbjct: 1272 YAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSG 1331
Query: 1334 FLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTFRGTVKEYLEESLGFG 1393
FLIPRPS+P WW W+Y++ PVAWTL G+++SQ GD+ + + +VK+++ E G+
Sbjct: 1332 FLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNM--SVKQFIREFYGYR 1389
Query: 1394 PGMXXXXXXXXXXXXXXXXXXXXXXXKFLNFQKR 1427
G K NFQKR
Sbjct: 1390 EGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3793 (1340.3 bits), Expect = 0., P = 0.
Identities = 737/1407 (52%), Positives = 967/1407 (68%)
Query: 28 AESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVRKLNRSRRELVV 87
+E EED+ EL WAAI RLP+ + +L T+ G+ + E ID+ +L ++ ++
Sbjct: 51 SERREEDDMELRWAAIERLPTFDRLRKGMLPQTSAN--GKIELEDIDLTRLEPKDKKHLM 108
Query: 88 SKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRALPTLVNATR 147
L+ ++DN K L ++ER DRVGIEVPK+EVR++N+ V DV++ SRALPTL N T
Sbjct: 109 EMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVTL 168
Query: 148 DVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS 207
+ E IL + KR + IL D+SG+VKP RMTLLLGPP+SGK+TLL ALAGKLD +
Sbjct: 169 NTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDT 228
Query: 208 LKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYIN 267
L+ SG ITY G++ EF Q+T AYISQ D H E+TVRE DF+ R G + ++
Sbjct: 229 LQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQL-MS 287
Query: 268 DLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV 327
+L+R EKE I+P P+IDAFMK+ ++ G++ S+ TDYVLK+LGLD+C++ + G+ M RG+
Sbjct: 288 ELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGI 347
Query: 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQP 387
SGGQKKR+TTGEM+VGP + LFMDEISTGLDSSTTFQI K +R VH D T++++LLQP
Sbjct: 348 SGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQP 407
Query: 388 PPETXXXXXXXXXXSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQ 447
PET SEG +VYQGPR VLEFFE GFQ P RKGVADFLQEVTSKKDQ Q
Sbjct: 408 APETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQ 467
Query: 448 YWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWEL 507
YW +PY ++ VS+ + F G+ L S VPYDK+K H +AL +Y +S WEL
Sbjct: 468 YWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWEL 527
Query: 508 FRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFA 567
F+ CF RE LL++R+SF+Y+F+T Q+ + + T++LRT +H ++G + +FF+
Sbjct: 528 FKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFS 587
Query: 568 VVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVY 627
++++MFNG +EL + RLPVFYKQRD F+P WA+++ +W+L++P S++E+ +W + Y
Sbjct: 588 LINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTY 647
Query: 628 FTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGF 687
+T+GFAP RFFR + F ++QMAL LFR + +I R V++N+ + +LLIVF +GGF
Sbjct: 648 YTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGF 707
Query: 688 IIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSV---IGDNTIGYNVLHTHS 744
II K+ I+PW +WAY++SP+ Y Q+AI +NEF RW + I T+G +L +
Sbjct: 708 IIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRG 767
Query: 745 LPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQFE- 803
+ YW+WI + ALL +SLLFN LAL YLNPL S+ + ++ ++ K + E
Sbjct: 768 FFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEG 827
Query: 804 --INTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGV 861
+ S+ G K+GM+LPFQPL++ F+NVNYYVDMP M++QG+ +LQLL +V G
Sbjct: 828 SVVELNSSSNKGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGA 887
Query: 862 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQND 921
F PG+LTALVG SGAGKTTLMDVLAGRKTGGYIEG I ISGYPK Q+TFAR+SGY EQND
Sbjct: 888 FRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQND 947
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
IHSP VTV ESL +SA LRLS ++ R FVEEVM LVEL LR+++VG PG GLST
Sbjct: 948 IHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLST 1007
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1041
EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID
Sbjct: 1008 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1067
Query: 1042 IFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAA 1101
IFE+FDELLLMKRGG+VIY G LG HS+ +++YF+A++G+P I GYNPATWML+VTT +
Sbjct: 1068 IFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPS 1127
Query: 1102 TEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFICFWKQ 1161
E ++ +DFA ++ +S YR + IK+LS PPPGS+ + F + Y+Q +Q CFWKQ
Sbjct: 1128 MESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQ 1187
Query: 1162 NLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNN 1221
YWR PQYNA+R TV ++ G +FW IG+K + Q L GA+YA+ LFLG N
Sbjct: 1188 YWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALN 1247
Query: 1222 ASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTXXXXXXXXXXXXXER 1281
A++VQP ++IERTVFYREKAAGMYS IPYA++Q VE+ Y +QT
Sbjct: 1248 AATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNW 1307
Query: 1282 TARKXXXXXXXXXXXXSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSI 1341
T K YFT YGMM + LTPN +A + S F SLWNL SGFLIPRP I
Sbjct: 1308 TMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQI 1367
Query: 1342 PGWWIWFYYISPVAWTLRGIVSSQLGDVETMI-VEPTFRGTVKEYLEESLGFGPGMXXXX 1400
P WW W+Y+ +PVAWTL G+++SQ+GD ++M+ + +K L+E GF
Sbjct: 1368 PIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISGIGDIDLKTLLKEGFGFEHDFLPVV 1427
Query: 1401 XXXXXXXXXXXXXXXXXXXKFLNFQKR 1427
KFLNFQ+R
Sbjct: 1428 AVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3705 (1309.3 bits), Expect = 0., P = 0.
Identities = 731/1406 (51%), Positives = 951/1406 (67%)
Query: 32 EEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVRKLNRSRRELVVSKAL 91
EED+ EL WAA+ RLP+ + +L T G+ E +DV L ++ ++ L
Sbjct: 53 EEDDVELRWAALERLPTYDRLRKGMLPQTMVN--GKIGLEDVDVTNLAPKEKKHLMEMIL 110
Query: 92 ATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFE 151
++DN K L ++ER DRVGIEVPK+EVR++NL V DV++ SRALPTL N T + E
Sbjct: 111 KFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIE 170
Query: 152 RILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKS 211
IL + K+ + IL D+SG++KP RMTLLLGPP+SGK+TLL ALAGKLD +L+ S
Sbjct: 171 SILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMS 230
Query: 212 GNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNR 271
G ITY G++ EF Q+T AYISQ D H E+TVRE+ DF+ R G + + +L+R
Sbjct: 231 GRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQL-LTELSR 289
Query: 272 LEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQ 331
E+E I+P PEIDAFMK+ ++ G++ S+ TDYVLK+LGLD+C++T+VG+ M RG+SGGQ
Sbjct: 290 REREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQ 349
Query: 332 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPET 391
+KR+TTGEM+VGP LFMDEISTGLDSSTTFQI K +R VH D T++++LLQP PET
Sbjct: 350 RKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPET 409
Query: 392 XXXXXXXXXXSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWAD 451
SEG +VYQG R VLEFFE +GF+ P RKG+ADFLQEVTSKKDQ QYW
Sbjct: 410 FELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNR 469
Query: 452 PSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTC 511
PY ++ V + + F G+ L S VPYDK+K HP+AL +Y +S +LF+ C
Sbjct: 470 REHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKAC 529
Query: 512 FAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHM 571
F RE LL++R+SF+Y+F+T Q+ + +A T++ RT +H ++G + LFF+++++
Sbjct: 530 FDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINL 589
Query: 572 MFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVG 631
MFNG +EL + RLPVF+KQRD F+P WA+++ ++L++P S++E+V+W + Y+T+G
Sbjct: 590 MFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIG 649
Query: 632 FAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPK 691
FAP RFFR + F ++QMAL LFR + ++ R V+AN+ + +LL+VF++GGFII K
Sbjct: 650 FAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISK 709
Query: 692 ESIKPWWSWAYWVSPLSYAQSAISVNEFAAARW---KKKSVIGDNTIGYNVLHTHSLPSG 748
+ I W +W Y+ SP+ Y Q+A+ +NEF RW + I T+G +L + +
Sbjct: 710 DDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTE 769
Query: 749 DYWYWIGVGALLLYSLLFNSVVTLALAYLNPL--RKSQVVID---DKEENSVKMAKQQFE 803
YW+WI +GALL +++LFN +AL YLNPL K+ V++ DK + S
Sbjct: 770 PYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTGGSV- 828
Query: 804 INTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFS 863
+ TS G KKGM+LPFQPL++ F+NVNYYVDMP M++QG+ +LQLL +V G F
Sbjct: 829 VELTSTSSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFR 888
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIH 923
PGVLTALVG SGAGKTTLMDVLAGRKTGGY+EG I ISGYPK Q+TFAR+SGY EQNDIH
Sbjct: 889 PGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIH 948
Query: 924 SPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983
SP VTV ESL +SA LRLS ++ R FVEEVM LVEL LR+++VG PG GLSTEQ
Sbjct: 949 SPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQ 1008
Query: 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1043
RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF
Sbjct: 1009 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1068
Query: 1044 EAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATE 1103
E+FDELLLMKRGG+VIY G LG HS+ +++YF+A++G+P I GYNPATWML+VTT + E
Sbjct: 1069 ESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSME 1128
Query: 1104 EKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFICFWKQNL 1163
++ VDFA ++ +S R + IK LS PPPGS L F + Y+Q +Q CFWK
Sbjct: 1129 SQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYW 1188
Query: 1164 IYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNAS 1223
WR PQYNA+R TV ++ G +FW G+K Q L GA+YA+ LFLG NA+
Sbjct: 1189 SNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAA 1248
Query: 1224 SVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTXXXXXXXXXXXXXERTA 1283
+VQP V+IERTVFYREKAAGMYS IPYA++Q VE+ Y +QT + T
Sbjct: 1249 TVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTV 1308
Query: 1284 RKXXXXXXXXXXXXSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPG 1343
K YFT YGMM V LTPN +A + S F S WNL SGFLIPRP IP
Sbjct: 1309 VKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPI 1368
Query: 1344 WWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTFRG--TVKEYLEESLGFGPGMXXXXX 1401
WW W+Y+ SPVAWTL GI++SQ+GD ++ IV T G ++K L+ GF
Sbjct: 1369 WWRWYYWASPVAWTLYGIITSQVGDRDS-IVHITGVGDMSLKTLLKNGFGFDYDFLPVVA 1427
Query: 1402 XXXXXXXXXXXXXXXXXXKFLNFQKR 1427
KFLNFQ+R
Sbjct: 1428 VVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3655 (1291.7 bits), Expect = 0., P = 0.
Identities = 714/1426 (50%), Positives = 969/1426 (67%)
Query: 17 TARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVR 76
+A +F+R+++ + EDE+EL WAA+ RLP+ + + + GE K I +
Sbjct: 4 SAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMV----GEPKE--IQIG 57
Query: 77 KLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGS 136
L S + L++ + + + + D + + +++R D V ++ PK+EVRFQNL V + V GS
Sbjct: 58 NLEASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGS 117
Query: 137 RALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTL 196
RALPT+ N ++ E +L + + KR+ LTIL+ +SGV++P R+TLLLGPP+SGK+TL
Sbjct: 118 RALPTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTL 177
Query: 197 LLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQ 256
LLALAG+L ++L+ SG ITYNGY L E RTSAY+SQ D H+ E+TVR+T +FA R Q
Sbjct: 178 LLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQ 237
Query: 257 GANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316
G + + +L R EK I P ++D FMK+ ++GG + S+ +YV+K+LGLD C++
Sbjct: 238 GVGFKYDMLL-ELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCAD 296
Query: 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQM 376
T+VG++MI+G+SGGQKKR+TTGE++VGP + LFMDEIS GLDSSTT QI+ +R+ H +
Sbjct: 297 TLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHAL 356
Query: 377 DATILMALLQPPPETXXXXXXXXXXSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFL 436
+ T +++LLQP PET SEG ++YQGPR EVL+FF SLGF P RK VADFL
Sbjct: 357 EGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFL 416
Query: 437 QEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALS 496
QEVTSKKDQ QYW+ P +PY ++P + A+AF+ GK L L VP+DK H +ALS
Sbjct: 417 QEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALS 476
Query: 497 KTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKN 556
++Y V K EL + FA + L+++++F+Y+F+ Q+ V + T+F RT +H +
Sbjct: 477 TSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDD 536
Query: 557 GNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSV 616
GN+YL L+F++V ++FNGF+E+P+++ +LPV YK RD +F+P+WA+++ SW+L +P S+
Sbjct: 537 GNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSI 596
Query: 617 LEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASS 676
+E+ W V Y+T+G+ P RF + L FSLHQM+LGLFR+M S+ R M+VANTF S
Sbjct: 597 IESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSF 656
Query: 677 SLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNT-- 734
++L+V +GGFII ++SI WW W YW+SPL YAQ+A SVNEF W+K + G++T
Sbjct: 657 AMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTA--GNHTSD 714
Query: 735 -IGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKE-- 791
+G +L SL SG+YWYWIGV ALL Y++LFN + TL LA+LNP K Q V+ +E
Sbjct: 715 SLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELD 774
Query: 792 ENSVKMAKQQFEINTTS-APESG-------KKKGMILPFQPLAMTFHNVNYYVDMPQAMR 843
E K +F + SG K +GM+LPFQPL+++F N+NYYVD+P ++
Sbjct: 775 EREKKRKGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLK 834
Query: 844 SQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 903
QGI E +LQLL N++G F PGVLTALVG SGAGKTTLMDVLAGRKTGG IEGD+ ISG+
Sbjct: 835 EQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGF 894
Query: 904 PKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963
PK Q TFARISGY EQND+HSP +TV ESL FSA LRL ++ + FV EVM LVEL
Sbjct: 895 PKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVEL 954
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
SL ALVG PG GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN
Sbjct: 955 TSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1014
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPS 1083
V+TGRT+VCTIHQPSIDIFE+FDELL MKRGG +IY G LG S +I YF++++G+
Sbjct: 1015 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQK 1074
Query: 1084 IPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFS 1143
I G+NPA WML+VT + E +LGVDFA++YR+S + + I+ LS P ++ ++F
Sbjct: 1075 IKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFP 1134
Query: 1144 STYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGL 1203
+ YSQ SQF C WKQNL YWR+PQY AVR +TV +L+LG++ W GSKR + Q L
Sbjct: 1135 TRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQL 1194
Query: 1204 FMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVF 1263
F MG++YA+ LF+G+ NA++ QP+VSIER V YRE+AAGMYS +P+A AQ +E PYV
Sbjct: 1195 FNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVL 1254
Query: 1264 VQTXXXXXXXXXXXXXERTARKXXXXXXXXXXXXSYFTFYGMMAVGLTPNQHLAAVISSA 1323
Q+ E +A K YFTFYGMM +TPN ++A++I++
Sbjct: 1255 AQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAP 1314
Query: 1324 FYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV--EPTFRGT 1381
FY LWNL SGF+IP IP WW W+Y+ +PVAWTL G++ SQ GD E + + +
Sbjct: 1315 FYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVM 1374
Query: 1382 VKEYLEESLGFGPGMXXXXXXXXXXXXXXXXXXXXXXXKFLNFQKR 1427
VK+ LE+ +G+ K NFQ+R
Sbjct: 1375 VKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3472 (1227.3 bits), Expect = 0., P = 0.
Identities = 685/1428 (47%), Positives = 941/1428 (65%)
Query: 21 SFTRASNAESLEEDED--------ELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTE- 71
SF +S+ +E D D L WA I RLP+ K+ +++T +G E+ TE
Sbjct: 34 SFRSSSSIYEVENDGDVNDHDAEYALQWAEIERLPTVKR-----MRSTLLDDGDESMTEK 88
Query: 72 ---TIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKV 128
+DV KL R L++ K + + DN KLL I+ R+DRVG+E+P +EVR+++LKV
Sbjct: 89 GRRVVDVTKLGAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKV 148
Query: 129 VADVQT-GSRALPTLVNATRDVFERI--LTGLRIFKPKRHSLTILNDVSGVVKPGRMTLL 185
VA+ + +ALPTL N + V + LTG + + K + I+NDV+G++KPGR+TLL
Sbjct: 149 VAECEVVEGKALPTLWNTAKRVLSELVKLTGAKTHEAK---INIINDVNGIIKPGRLTLL 205
Query: 186 LGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTV 245
LGPP+ GK+TLL AL+G L+++LK SG I+YNG++LDEF Q+TSAYISQ D HI E+TV
Sbjct: 206 LGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTV 265
Query: 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYV 305
RET DF+AR QG + ++++ EKE+ I P E+DA+MKA SV G + S+ TDY+
Sbjct: 266 RETVDFSARCQGVGSR-TDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYI 324
Query: 306 LKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQI 365
LK+LGLD+C+E ++G+ M RG+SGGQKKR+TT EMIVGP K LFMDEI+ GLDSST FQI
Sbjct: 325 LKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQI 384
Query: 366 VKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSEGHLVYQGPRAEVLEFFESLGFQ 425
VK L+ F H AT+L++LLQP PE+ ++G +VY GPR EVL FFE GF+
Sbjct: 385 VKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFR 444
Query: 426 LPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPY 485
P RKGVADFLQEV SKKDQAQYW PY F+ V ++K FKD GK ++ +LS PY
Sbjct: 445 CPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPY 504
Query: 486 DKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFL 545
D+SK H ALS + Y++ WELF C +RE LL++R+ F+YIF+T Q+ F+ T+F+
Sbjct: 505 DRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFI 564
Query: 546 RTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSV 605
RTR+ D +GN Y+S LFFA++ ++ +GF EL + RL VFYKQ+ F+PAWA+++
Sbjct: 565 RTRMG-IDIIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAI 623
Query: 606 ASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIAR 665
+ +L+VP S E++VW+C+ Y+ +G+ PE RFF+ LLF++H ++ +FR +A+I +
Sbjct: 624 PATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQ 683
Query: 666 DMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWK 725
+V + T S +L F+ GF+IP S+ W W +W +PLSY + +SVNEF A RW
Sbjct: 684 TVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWN 743
Query: 726 KKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYL-NPLRKSQ 784
+ + T+G +L T + Y YW+ + ALL +++LFN + TLAL +L +P
Sbjct: 744 QMQP-NNFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRA 802
Query: 785 VVIDDK--EENSVKMAKQQFEIN--TTSAP-ESGKKKGMILPFQPLAMTFHNVNYYVDMP 839
++ DK E + + + + TT +P ++ ++ M+LPF+PL +TF ++NY+VDMP
Sbjct: 803 MISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTEEEDKMVLPFKPLTVTFQDLNYFVDMP 862
Query: 840 QAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIK 899
MR QG +KKLQLLS+++G F PG+LTAL+G SGAGKTTL+DVLAGRKT GYIEGDI+
Sbjct: 863 VEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIR 922
Query: 900 ISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
ISG+PK Q TFAR+SGY EQ DIHSP +TVEES+ +SA LRL+ E+ + +FV++V+
Sbjct: 923 ISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLE 982
Query: 960 LVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
+ELD ++D+LVG G SGLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR
Sbjct: 983 TIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1042
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALD 1079
V+N DTGRT+VCTIHQPSIDIFEAFDEL+L+KRGGR+IY G LG HS+ +I+YF+++
Sbjct: 1043 AVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVP 1102
Query: 1080 GIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEP 1139
IP I +NPATWML+V++ + E +LGVDFA +Y S Y+ +K LS P GS
Sbjct: 1103 EIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSD 1162
Query: 1140 LKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSS 1199
++F T++Q QF WK NL YWRSP YN +R+ T+ ++LI G++FW G +
Sbjct: 1163 IQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDT 1222
Query: 1200 TQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEM 1259
Q +F V GA+Y LFLG+NN +S ER V YRE+ AGMYS YA+ Q + E+
Sbjct: 1223 QQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQVVTEI 1282
Query: 1260 PYVFVQTXXXXXXXXXXXXXERTARKXXXXXXXXXXXXSYFTFYGMMAVGLTPNQHLAAV 1319
PY+F+Q +A K F + M V +TPN +AA+
Sbjct: 1283 PYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAI 1342
Query: 1320 ISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTFR 1379
+ S FY +NL SGFLIP+ +PGWWIW YY++P +WTL G +SSQ GD+ I
Sbjct: 1343 LQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQS 1402
Query: 1380 GTVKEYLEESLGFGPGMXXXXXXXXXXXXXXXXXXXXXXXKFLNFQKR 1427
TV +L++ GF + LNFQ+R
Sbjct: 1403 TTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3416 (1207.6 bits), Expect = 0., P = 0.
Identities = 683/1420 (48%), Positives = 925/1420 (65%)
Query: 19 RESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVRKL 78
R S +R + + +E E L WA I RLP+ K+ +L+ G E + +DV KL
Sbjct: 6 RSSSSRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSSLVDKYG--EGTEKGKKVVDVTKL 63
Query: 79 NRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVA--DVQTGS 136
R L++ K + + DN KLL I+ R++RVG+E P +EVR+++L V A +V G
Sbjct: 64 GAMERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEG- 122
Query: 137 RALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTL 196
+ALPTL N+ + VF +L L + ++ IL DVSG++ PGR+TLLLGPP GK+TL
Sbjct: 123 KALPTLWNSLKHVFLDLLK-LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTL 181
Query: 197 LLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQ 256
L AL+G L+++LK G I+YNG+ L+E Q+TSAYISQ D HI E+T RET DF+AR Q
Sbjct: 182 LKALSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQ 241
Query: 257 GANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316
G + ++++ EK+ I P PEIDA+MKA SV G K S+ TDY+LK+LGLD+C+E
Sbjct: 242 GVGSR-TDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAE 300
Query: 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQM 376
T+VGN M RG+SGGQKKR+TT EMIVGP K LFMDEI+ GLDSST FQI+K L+ H
Sbjct: 301 TLVGNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHIT 360
Query: 377 DATILMALLQPPPETXXXXXXXXXXSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFL 436
+AT+ ++LLQP PE+ +EG +VY GPR +VL+FFE GFQ P RKGVADFL
Sbjct: 361 NATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFL 420
Query: 437 QEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALS 496
QEV SKKDQ QYW + P+ F+ V ++K FKD G+ ++ +LS PYD SK H ALS
Sbjct: 421 QEVISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALS 480
Query: 497 KTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKN 556
Y++ KWELFR C +RE LL++R+ F+Y+F+T Q+ + T+F+RTR+ D +
Sbjct: 481 FNVYSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMD-IDIIH 539
Query: 557 GNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSV 616
GN Y+SCLFFA V ++ +G EL + + RL VFYKQ+ F+PAWA+++ + +L++P S
Sbjct: 540 GNSYMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSF 599
Query: 617 LEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASS 676
E++VW+C+ Y+ +G+ PE RFFR +LF++H ++ +FR +A+I + V A T S
Sbjct: 600 FESLVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSF 659
Query: 677 SLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIG 736
+LI F+ GF IP + W W +WV+P+SYA+ +SVNEF A RW+K + T+G
Sbjct: 660 VMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPT-NVTLG 718
Query: 737 YNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYL-NPLRKSQVVIDDK----- 790
+L + L DY YW+ + ALL +++FN++ TLAL++L +P ++ DK
Sbjct: 719 RTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQ 778
Query: 791 --EENSVKMAKQ-QFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGI 847
+++SVK K I T P GK MILPF+PL +TF ++NYYVD+P M+ QG
Sbjct: 779 GTKDSSVKKNKPLDSSIKTNEDP--GK---MILPFKPLTITFQDLNYYVDVPVEMKGQGY 833
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907
EKKLQLLS ++G F PGVLTAL+G SGAGKTTL+DVLAGRKT GYIEG+I+ISG+ K Q
Sbjct: 834 NEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQ 893
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
TFAR+SGY EQ DIHSP +TVEESL +SA LRL E++ + FV++V+ +EL+ ++
Sbjct: 894 ETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIK 953
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
DALVG G SGLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V+N +T
Sbjct: 954 DALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAET 1013
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSG 1087
GRT+VCTIHQPSI IFEAFDEL+L+KRGGR+IY G LG HS +I+YFQ + G+ I
Sbjct: 1014 GRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDK 1073
Query: 1088 YNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYS 1147
YNPATWMLEVT+ + E +L +DFA +Y S+ Y+ +K LS P GS L F T++
Sbjct: 1074 YNPATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFA 1133
Query: 1148 QDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVM 1207
Q+ QF C WK +L YWRSP YN +R+ T ++ I G +FW+ G K + Q LF V+
Sbjct: 1134 QNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVL 1193
Query: 1208 GALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTX 1267
GA+Y LF+G+NN +S ER V YRE+ AGMYS YA+AQ + E+PY+F+Q+
Sbjct: 1194 GAIYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSA 1253
Query: 1268 XXXXXXXXXXXXERTARKXXXXXXXXXXXXSYFTFYGMMAVGLTPNQHLAAVISSAFYSL 1327
+ K F + M + +TPN +AA++ S F++
Sbjct: 1254 EFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTT 1313
Query: 1328 WNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVEPTFRGTVKEYLE 1387
+N+ +GFLIP+P IP WW+WFYYI+P +WTL SSQ GD+ I TV +LE
Sbjct: 1314 FNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLE 1373
Query: 1388 ESLGFGPGMXXXXXXXXXXXXXXXXXXXXXXXKFLNFQKR 1427
+ GF LNFQKR
Sbjct: 1374 DYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2118 (750.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 402/803 (50%), Positives = 562/803 (69%)
Query: 22 FTRASN-AESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRN--GGEAKTETIDVRKL 78
F+ S +S+ +DE+ L WAAI +LP+ + L+ + G + ++ +DV KL
Sbjct: 36 FSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKL 95
Query: 79 NRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRA 138
+ R+ + +QDN ++L+ ++ R+DRVGI++P VEVR+++L + AD TG+R+
Sbjct: 96 DGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTGNRS 155
Query: 139 LPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLL 198
LPTL+N R++ E L + I K+ LTIL D+SGV+KPGRMTLLLGPP+SGK+TLLL
Sbjct: 156 LPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLL 215
Query: 199 ALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGA 258
ALAGKLD SL+ SG+ITYNGY+LDEF ++TSAYISQ D H+ +TV+ET DF+AR QG
Sbjct: 216 ALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQGV 275
Query: 259 NEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318
+ +N+L R EK+ I P ++D FMKAS+ G K+S+ TDY LK+LGLD+C +T+
Sbjct: 276 GTRYDL-LNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTI 334
Query: 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDA 378
VG+DM+RG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSSTTFQIVKCL+ VH +A
Sbjct: 335 VGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEA 394
Query: 379 TILMALLQPPPETXXXXXXXXXXSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQE 438
T+LM+LLQP PET SEG +VYQGPR +LEFFES GF+ P RKG ADFLQE
Sbjct: 395 TVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQE 454
Query: 439 VTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKT 498
VTSKKDQ QYW +P++PY ++PVSE A +K G + + L+VP+DKS+ H +AL
Sbjct: 455 VTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFD 514
Query: 499 RYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGN 558
+Y+VSK EL ++C+ +E LL+QR++F Y+F+T Q+ + + T+FLRT ++ +E + N
Sbjct: 515 KYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDAN 574
Query: 559 LYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLE 618
LY+ L F ++ MFNGF+E+ +M++RLPVFYKQRD F+P+W +S+ +++L +P S+LE
Sbjct: 575 LYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILE 634
Query: 619 AVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSL 678
+ W V Y+++GFAP+ RFF+ L+F + QMA LFR++AS+ R M++ANT + +L
Sbjct: 635 STAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTL 694
Query: 679 LIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTI--G 736
L+VFL+GGF++PK I WW WAYWVSPL+YA + + VNE A RW K ++TI G
Sbjct: 695 LLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLG 754
Query: 737 YNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVK 796
VL+T + WYWI VGALL ++ LFN + TLAL YLNPL K ++ ++E
Sbjct: 755 TMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDAD 814
Query: 797 MAKQQFEINTTSAPESGKKKGMI 819
K + ++A G ++G +
Sbjct: 815 QGKDPMRRSLSTA--DGNRRGEV 835
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7PC88 | AB31G_ARATH | No assigned EC number | 0.7494 | 0.9929 | 0.9936 | yes | no |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5309 | 0.9719 | 0.9493 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.5442 | 0.9803 | 0.9601 | yes | no |
| Q5Z9S8 | PDR12_ORYSJ | No assigned EC number | 0.5424 | 0.9768 | 0.9293 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.5460 | 0.9768 | 0.9673 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.5421 | 0.9768 | 0.9721 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.5485 | 0.9768 | 0.9707 | N/A | no |
| Q8S628 | PDR13_ORYSJ | No assigned EC number | 0.6597 | 0.9929 | 0.9833 | yes | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.5442 | 0.9803 | 0.9601 | N/A | no |
| Q8GU89 | PDR4_ORYSJ | No assigned EC number | 0.5415 | 0.9831 | 0.9675 | yes | no |
| Q9NGP5 | ABCG2_DICDI | No assigned EC number | 0.3090 | 0.8037 | 0.8637 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5060 | 0.9803 | 0.9668 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.4__961__AT2G29940.1 | annotation not avaliable (1428 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1427 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-99 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-96 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-78 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-63 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-63 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-57 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-53 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-53 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-47 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-46 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-44 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 5e-42 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-38 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-33 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-31 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-29 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-27 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-26 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-25 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-24 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-24 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-24 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-23 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-22 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 2e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-22 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-22 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-22 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-21 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-21 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-21 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-21 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-21 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-20 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-20 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-20 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-20 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-20 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 8e-20 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-20 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-19 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-19 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-19 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-18 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-18 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-18 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-17 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-17 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-17 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-17 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-16 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-16 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-16 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-16 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-16 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-16 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 9e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-15 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-15 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-15 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-15 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-15 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-15 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-15 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-15 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-15 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-14 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-14 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-14 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-14 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-14 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-14 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-14 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-14 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-14 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-14 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-14 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-13 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-13 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-13 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-13 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 9e-13 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-12 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-12 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-12 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-12 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-12 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-12 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-11 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-11 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-11 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-11 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-11 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-11 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-11 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-11 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-11 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-10 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-10 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-10 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-10 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-10 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-10 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-10 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-10 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-10 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-10 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-10 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 9e-10 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-09 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-09 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-09 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-09 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-09 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-09 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-09 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-09 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-09 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-09 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-09 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-09 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-09 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-09 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-09 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-08 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-08 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-08 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-08 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-08 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-08 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-08 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-08 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-08 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-08 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-08 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-08 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-08 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-08 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-08 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-08 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 9e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-07 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-07 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-07 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-07 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-07 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-07 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 5e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-07 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 7e-07 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-07 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 7e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-07 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-07 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 9e-07 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 9e-07 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 9e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 9e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-06 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-06 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-06 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-06 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-06 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-06 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-06 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-06 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-06 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-06 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 8e-06 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-06 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 9e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 9e-06 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-05 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-05 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-05 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-05 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-05 | |
| pfam13476 | 204 | pfam13476, AAA_23, AAA domain | 2e-05 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-05 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-05 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 6e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 6e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-05 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 8e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 8e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 8e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-05 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 9e-05 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-04 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-04 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-04 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 4e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-04 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 7e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 7e-04 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 8e-04 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-04 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 0.001 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 0.001 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 0.001 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 0.001 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.001 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 0.001 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.001 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.001 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.001 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 0.002 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 0.002 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.002 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.002 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.002 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.002 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.002 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.002 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 0.003 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 0.003 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.003 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.003 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.003 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.003 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.004 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 0.004 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 0.004 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.004 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.004 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.004 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1914 bits (4961), Expect = 0.0
Identities = 821/1436 (57%), Positives = 1057/1436 (73%), Gaps = 42/1436 (2%)
Query: 30 SLEEDEDELMWAAIARLPSQKQGNFALLKT--TTPRNGGEAKTETIDVRKLNRSRRELVV 87
S++EDE+ L WAAI +LP+ + +++K+ G + + +DV KL+ + R+ +
Sbjct: 39 SVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFI 98
Query: 88 SKALATNDQDNYKLLSAIKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRALPTLVNATR 147
++DN K L + R+DRVGI++P VEVRF++L V AD GSRALPTL NA R
Sbjct: 99 DMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAAR 158
Query: 148 DVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS 207
++ E L L I K+ LTIL D SG++KP RMTLLLGPP+SGK+TLLLALAGKLD S
Sbjct: 159 NIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPS 218
Query: 208 LKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYIN 267
LK SG ITYNGY+L+EF ++TSAYISQ D H+ +TV+ET DF+AR QG + ++
Sbjct: 219 LKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYD-LLS 277
Query: 268 DLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV 327
+L R EK+ I P E+D FMKA+++ G K S+ TDY LK+LGLD+C +T+VG++MIRG+
Sbjct: 278 ELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337
Query: 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQP 387
SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSSTT+QIVKCL+ VH +AT+LM+LLQP
Sbjct: 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397
Query: 388 PPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQ 447
PETFDLFDD++LLSEG +VYQGPR +LEFFES GF+ P RKG ADFLQEVTSKKDQ Q
Sbjct: 398 APETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ 457
Query: 448 YWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWEL 507
YWAD +KPY ++ VSE A+ FK G L++ LSVP+DKS+ H +AL ++Y+V K EL
Sbjct: 458 YWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMEL 517
Query: 508 FRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFA 567
+ C+ +E LL++R++F+Y+F+T Q+ V +A T+FLRT +H +E++G LY+ L F+
Sbjct: 518 LKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFS 577
Query: 568 VVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVY 627
++ MFNGF+EL +MI RLPVFYKQRD FHP W +++ +++L +P S++E+VVW + Y
Sbjct: 578 MIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITY 637
Query: 628 FTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGF 687
+++GFAPE RFF+ + L+F + QMA G+FR++AS+ R M++ANT + LL+VFL+GGF
Sbjct: 638 YSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGF 697
Query: 688 IIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNT--IGYNVLHTHSL 745
I+PK I WW WAYWVSPLSY +A++VNE A RW K DN+ +G VL+ +
Sbjct: 698 ILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMA-SDNSTRLGTAVLNIFDV 756
Query: 746 PSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQ---- 801
+ WYWIGVGALL +++LFN + TLAL YLNPL K Q +I EE + +M ++
Sbjct: 757 FTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAII--SEETAEEMEGEEDSIP 814
Query: 802 -------------FEINTTSAPESGK---------------KKGMILPFQPLAMTFHNVN 833
I S PE K+GM+LPF PLAM+F +VN
Sbjct: 815 RSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVN 874
Query: 834 YYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY 893
Y+VDMP M+ QG+ E +LQLL V+G F PGVLTAL+G SGAGKTTLMDVLAGRKTGGY
Sbjct: 875 YFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 934
Query: 894 IEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEF 953
IEGDI+ISG+PK+Q TFARISGY EQNDIHSPQVTV ESL +SA LRL KEVSK ++ F
Sbjct: 935 IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMF 994
Query: 954 VEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
V+EVM LVELD+L+DA+VG PG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 995 VDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMID 1073
AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG+VIY G LG +S +I+
Sbjct: 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIE 1114
Query: 1074 YFQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVP 1133
YF+A+ G+P I YNPATWMLEV++ A E KLG+DFA+ Y+SS Y+ ++ +K LS P
Sbjct: 1115 YFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTP 1174
Query: 1134 PPGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDI 1193
PPG+ L F++ YSQ QF C WKQ YWRSP YN VR FT+AAAL++G++FW +
Sbjct: 1175 PPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKV 1234
Query: 1194 GSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVA 1253
G+KRS+ L MV+GA+YA+ LF+G+NN S+VQP+V++ERTVFYRE+AAGMYS +PYA+A
Sbjct: 1235 GTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIA 1294
Query: 1254 QGLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPN 1313
Q + E+PYV +QT + I + M+ FE TA KFF F F +F YFT+YGMM V LTPN
Sbjct: 1295 QVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354
Query: 1314 QHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMI 1373
Q +AA+ ++AFY L+NL SGF IPRP IP WW+W+Y+I PVAWT+ G++ SQ GDVE I
Sbjct: 1355 QQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTI 1414
Query: 1374 VEPTF--RGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427
P T+K Y+++ G+ P +G AAVLV F++ F FAF ++ LNFQ R
Sbjct: 1415 KVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1193 bits (3089), Expect = 0.0
Identities = 419/1345 (31%), Positives = 660/1345 (49%), Gaps = 107/1345 (7%)
Query: 97 DNYKLLSAIKERLDRVGIEVP--KVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERIL 154
+ + ++ +D I K+ V ++NL V S PT NA + R
Sbjct: 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGF 62
Query: 155 TGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLK-KSGN 213
L+ F+ + IL + G++KPG +T++LG P SG STLL +A D G
Sbjct: 63 RKLKKFR-DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121
Query: 214 ITYNGYKLDEF--HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNR 271
ITY+G +E H + Y ++TD H P LTV ET DFAAR + + ++R
Sbjct: 122 ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQN----RPDGVSR 177
Query: 272 LEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQ 331
E ++I D + GL T VGND +RGVSGG+
Sbjct: 178 EEYAKHIA-----------------------DVYMATYGLSHTRNTKVGNDFVRGVSGGE 214
Query: 332 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPET 391
+KRV+ E +G K D + GLDS+T + ++ L+ + +D T L+A+ Q +
Sbjct: 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDA 274
Query: 392 FDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWAD 451
++LFD +++L EG+ +Y GP + ++FE +GF+ P R+ ADFL +TS + Q
Sbjct: 275 YELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKPG 333
Query: 452 PSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDK---------------SKCHPSALS 496
K V E +++S L + D+ +K
Sbjct: 334 YEKK-VPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRP 392
Query: 497 KTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKN 556
+ Y VS + C AR L ++ + +F + + ++F P + +
Sbjct: 393 SSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNL---PKNTSD 449
Query: 557 GNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSV 616
LFFA++ F+ E+ M P+ K R + A ++AS I +P+ +
Sbjct: 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKI 509
Query: 617 LEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASS 676
+E+VV++ ++YF V F GRFF ++ +LF LFR + ++ + + A T A+
Sbjct: 510 IESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569
Query: 677 SLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIG----- 731
LL + + GF IP+ S+ W W Y+V+PL+YA ++ VNEF R++ +
Sbjct: 570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGY 629
Query: 732 DNTIGYNVLHTH--SLPSGDY----------------WYWIGVGALLLYSLLFNSVVTLA 773
DN N + T + P DY W G ++ +++ F V L
Sbjct: 630 DNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILL 689
Query: 774 LAYLNPLRKSQVVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVN 833
+ ++ ++ S+K AK+ E T+++ ++ + G +L L +VN
Sbjct: 690 TEFNKGAKQKGEIL-VFRRGSLKRAKKAGE--TSASNKNDIEAGEVLGSTDLTDESDDVN 746
Query: 834 YYVDMPQA-------MRS----QGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM 882
DM + R+ I ++K +L+NV G PG LTAL+G+SGAGKTTL+
Sbjct: 747 DEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL 806
Query: 883 DVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLS 942
+VLA R T G I G ++ S+F R GYV+Q D+H P TV ESL FSA LR
Sbjct: 807 NVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQP 866
Query: 943 KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANP-SIIF 1001
K VSK+++ E+VEEV++L+E++S DA+VG PG GL+ EQRKRLTI VELVA P ++F
Sbjct: 867 KSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLF 925
Query: 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+DEPTSGLD++ A + + +R D G+ ++CTIHQPS +FE FD LLL+++GG+ +Y
Sbjct: 926 LDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF 985
Query: 1062 GKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYR 1121
G LG +S T+I+YF+ G P P NPA WMLEV AA D+ +V+R+S +Y+
Sbjct: 986 GDLGENSHTIINYFEK-HGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQ 1044
Query: 1122 VVESSIKNLSVPPPGSEPLKFS---STYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAF 1178
V++ + L +E S Y+ QF + W+ YWR+P Y +
Sbjct: 1045 AVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFL 1104
Query: 1179 TVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYR 1238
T+ AAL +G F+ +G +S QGL M A++ + + + P V+ R
Sbjct: 1105 TIFAALFIGFTFFKVG---TSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVR 1161
Query: 1239 EKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINFERTA-------RKFFLFLV 1291
E+ + +S + + AQ VE+PY V IF FI ++ + F A + LF +
Sbjct: 1162 ERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWL 1221
Query: 1292 FMFLTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYI 1351
+ F YF+ G M + PN AAV++S +++ G L P +PG+WI+ Y
Sbjct: 1222 LSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRC 1281
Query: 1352 SPVAWTLRGIVSSQLGDVETMIVEP 1376
SP + ++ ++S+ L DV
Sbjct: 1282 SPFTYLVQALLSTGLADVPVTCKVK 1306
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 314 bits (808), Expect = 4e-99
Identities = 115/239 (48%), Positives = 146/239 (61%), Gaps = 47/239 (19%)
Query: 824 PLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMD 883
+T+ N+NY V + K QLL+N+SG PG LTAL+G SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVP---------VKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 884 VLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSK 943
VLAGRKT G I G+I I+G P ++ F R +GYVEQ D+HSP +TV E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLDK-NFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 944 EVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMD 1003
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD LLL+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 323 bits (829), Expect = 2e-96
Identities = 175/577 (30%), Positives = 278/577 (48%), Gaps = 26/577 (4%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKEQS 908
+ LL NVSGV PG L A++GSSGAGKTTLM+ LA R G G + ++G P +
Sbjct: 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK 95
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
IS YV+Q+D+ P +TV E L F A+LR+ + V+K ++ E V+EV++ + L +
Sbjct: 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN 155
Query: 969 ALVGFPGS-SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+G PG GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK 215
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSG 1087
G+T++CTIHQPS ++FE FD+++LM GRV Y G + + +F L G P P
Sbjct: 216 GKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGS-PDQA---VPFFSDL-GHP-CPEN 268
Query: 1088 YNPATWMLEV--TTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKF--- 1142
YNPA + ++V +E + + S + + N ++ + L
Sbjct: 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSE 328
Query: 1143 ---SSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSS 1199
Y+ +QF+ + L R P VRL T+ A+++G ++ G +
Sbjct: 329 NMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKG 388
Query: 1200 TQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEM 1259
Q + GAL+ + N V + + E VF RE +G+Y Y +A+ + E+
Sbjct: 389 VQN---INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAEL 445
Query: 1260 PYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAV 1319
P + +F IT++MI A F FL + L + T +G + + +A
Sbjct: 446 PLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505
Query: 1320 ISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVE-----TMIV 1374
+ F + L GF I SIP ++ W Y+S + G++ +Q DV+ +
Sbjct: 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANT 565
Query: 1375 EPTFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLF 1411
+ + LE L F + + LV F
Sbjct: 566 TGPCPSSGEVILET-LSFRNADLYLDLIGLVILIFFF 601
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 5e-78
Identities = 102/235 (43%), Positives = 141/235 (60%), Gaps = 45/235 (19%)
Query: 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG 887
+F N+ V + QLL NVSG PG LTA++G SGAGK+TL++ LAG
Sbjct: 5 SFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57
Query: 888 RKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSK 947
R+TG + G++ I+G P ++ +F +I GYV Q+DI P +TV E+L F+A LR
Sbjct: 58 RRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR------- 110
Query: 948 NQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007
GLS +RKR++IA+ELV+NPS++F+DEPTS
Sbjct: 111 ------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTS 140
Query: 1008 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
GLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+LLL+ + GRVIY G
Sbjct: 141 GLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 1e-63
Identities = 82/255 (32%), Positives = 109/255 (42%), Gaps = 65/255 (25%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYN 217
R + IL D SGVVKPG M L+LG P SG STLL ALA + + ++ G+I YN
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYN 70
Query: 218 GYKLDEFHV--QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275
G EF Y+S+ D H P LTVRET DFA R +G
Sbjct: 71 GIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG------------------ 112
Query: 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
+ F++ S G +K RV
Sbjct: 113 ---------NEFVRGISGGERK------------------------------------RV 127
Query: 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLF 395
+ E +V L D + GLDSST +I+KC+R + T ++L Q E +DLF
Sbjct: 128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLF 187
Query: 396 DDLLLLSEGHLVYQG 410
D +L+L EG +Y G
Sbjct: 188 DKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 2e-63
Identities = 153/620 (24%), Positives = 258/620 (41%), Gaps = 58/620 (9%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
F +R +L +VSGV KPG + ++G +GK+TL+ ALA + +K SG++ NG
Sbjct: 31 FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM 90
Query: 220 KLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIR 279
+D ++ SAY+ Q D IP LTVRE F A +
Sbjct: 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR----------------------- 127
Query: 280 PSPEIDAFMKAS-SVGGKKHSVSTDYVLKVLGLDLCSETVVGN-DMIRGVSGGQKKRVTT 337
M + K+ V D VL+ LGL C+ T +G ++G+SGG++KR+
Sbjct: 128 --------MPRRVTKKEKRERV--DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 338 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397
++ LF DE ++GLDS + +V+ L+ Q TI+ + QP E F+LFD
Sbjct: 178 ASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA-QKGKTIICTIHQPSSELFELFDK 236
Query: 398 LLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEV--TSKKDQAQYWADPSKP 455
++L++EG + Y G + + FF LG P ADF +V + + K
Sbjct: 237 IILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKI 296
Query: 456 YVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFARE 515
VS+I + + + K+ K + Y S W F R
Sbjct: 297 CDSFAVSDIGRDMLVNTNLWSGKAG---GLVK---DSENMEGIGYNASWWTQFYALLKRS 350
Query: 516 ILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMF-N 574
L + R L R Q + ++L L +N N LF + +M F N
Sbjct: 351 WLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN---GALFLFLTNMTFQN 407
Query: 575 GFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAP 634
F + + LPVF ++ + + A+ +A I +P ++ +++ + Y+ +G
Sbjct: 408 VFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRS 467
Query: 635 ETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESI 694
F +FL+ + +A +++ +A T ++ L GGF I +SI
Sbjct: 468 GATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSI 527
Query: 695 KPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIGY------NVLHTHSLPSG 748
++ W ++S Y + +N+++ NT G +L T S +
Sbjct: 528 PVYFKWLSYLSWFRYGNEGLLINQWSDVD--NIECTSANTTGPCPSSGEVILETLSFRNA 585
Query: 749 DYW--YWIGVGALLLYSLLF 766
D + V + + LL
Sbjct: 586 DLYLDLIGLVILIFFFRLLA 605
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 9e-57
Identities = 82/217 (37%), Positives = 130/217 (59%), Gaps = 8/217 (3%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKE 906
K ++L++VS G + A++GSSG+GKTTL+D ++GR GG G I +G P++
Sbjct: 16 WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK 75
Query: 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVE-EVMRLVELDS 965
F + YV Q+DI P +TV E+L ++A LRL ++ S R + VE ++R + L
Sbjct: 76 PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR 135
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+ LV G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+
Sbjct: 136 IGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA 190
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
R V+ TIHQP D+F FD +LL+ G ++Y G
Sbjct: 191 RRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 3e-53
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 7/215 (3%)
Query: 1153 QFFICFWKQNLIYWRSPQYN-AVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALY 1211
Q ++ L WR P RL + AL+ G+VF ++ + + G G L+
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLLF 57
Query: 1212 ASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGF 1271
S LF ++ + + P+ ER V RE A+ +YSP Y +A+ LVE+P +Q IIF
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 1272 ITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQ 1331
I +FM+ + +FFLFL+ + LT + G+ L P+ A+ I L
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1332 SGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQL 1366
SGF IP S+PGW W YY++P+ + + + +++
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 5e-53
Identities = 155/586 (26%), Positives = 283/586 (48%), Gaps = 65/586 (11%)
Query: 824 PLAMTFHNVNYYVDMPQAMRSQGIPEKKL-----------------QLLSNVSGVFSPGV 866
P+ + F +V Y V + M+++G K++ +L+ V+G+ SPG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 867 LTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQ 926
+ A++G SG+GK+TL++ LAGR G G I + + R G+V Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 927 VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKR 986
+TV E+L F + LRL K ++K ++ E V+ + L + ++G G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1046
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1047 DELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATEEKL 1106
D +L++ GR ++ GK + YF+++ PS P NPA ++L++
Sbjct: 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVGFSPSFP--MNPADFLLDLAN------- 320
Query: 1107 GVDFADVYRSSEQYRVVESSIKNL-SVPPPGSEPLKFSSTYSQDP--------------- 1150
GV D E+ V +S + + ++ P + S + Q
Sbjct: 321 GVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSS 380
Query: 1151 --------LSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQG 1202
+QF I +++L + +N +R+ +AAAL+ G ++W S +
Sbjct: 381 DRISISTWFNQFSILL-QRSLKERKHESFNTLRVFQVIAAALLAGLMWW-----HSDFRD 434
Query: 1203 LFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYV 1262
+ +G L+ +F GV + + + ER +F +E+A+GMY+ Y +A+ + ++P
Sbjct: 435 VQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPME 494
Query: 1263 FVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISS 1322
+ IF +T++M + F L L+ + G+ + A+ I +
Sbjct: 495 LILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVT 554
Query: 1323 AFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGD 1368
+ L GF + + +P W YIS ++ R +++ Q G+
Sbjct: 555 VTMLAFVLTGGFYVHK--LPSCMAWIKYISTTFYSYRLLINVQYGE 598
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 6e-47
Identities = 66/234 (28%), Positives = 105/234 (44%), Gaps = 12/234 (5%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--KEQ 907
L VS PG + L+G +GAGKTTL+ +LAG G+I + GY KE
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ R GYV Q P++TV E+L F A L + +R +EE++ L L+
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGI 1081
G + + E D ++++ G + G + K L+
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPE 239
|
Length = 293 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 2e-46
Identities = 150/559 (26%), Positives = 261/559 (46%), Gaps = 69/559 (12%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
TILN V+G+ PG + +LGP SGKSTLL ALAG++ + +G I N K + ++
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 228 RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287
RT +++Q D P LTVRET F + L RL K
Sbjct: 141 RT-GFVTQDDILYPHLTVRETLVFCS---------------LLRLPK------------- 171
Query: 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG-EMIVGPRK 346
S+ ++ + + V+ LGL C T++GN IRG+SGG++KRV+ EM++ P
Sbjct: 172 ----SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP-S 226
Query: 347 TLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHL 406
L +DE ++GLD++ +++V L + + TI+ ++ QP + +FD +L+LSEG
Sbjct: 227 LLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285
Query: 407 VYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKP---------YV 457
++ G ++ + +FES+GF ADFL ++ + Q ++ KP Y
Sbjct: 286 LFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYN 345
Query: 458 FLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREIL 517
L ++ A + S F +A + +K H S+ R ++S W F + +
Sbjct: 346 TLLAPKVKAAIEMSHFPQANARFVGSA--STKEHRSS---DRISISTW------FNQFSI 394
Query: 518 LIQR------HSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHM 571
L+QR H R QV +A M+ + ++ G L+ +F+ V
Sbjct: 395 LLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGV--- 451
Query: 572 MFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVG 631
F F+ + + +F K+R + + ++ +A + +P ++ ++ V Y+ G
Sbjct: 452 -FPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAG 510
Query: 632 FAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPK 691
PE G F + +L ++ GL + + D A+T + ++L L GGF + K
Sbjct: 511 LKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHK 570
Query: 692 ESIKPWWSWAYWVSPLSYA 710
+ +W ++S Y+
Sbjct: 571 --LPSCMAWIKYISTTFYS 587
|
Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 6e-44
Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 39/252 (15%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
K ILNDVS V+ G++ +LG SGK+TLL A++G+++ SG I +NG
Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72
Query: 220 KLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIR 279
Q+ AY+ Q D +P LTVRET + A I L R + +
Sbjct: 73 PRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTA------------ILRLPRKSSDAIRK 120
Query: 280 PSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG- 338
E + L + T +G ++++G+SGG+++RV+
Sbjct: 121 KRVE------------------------DVLLRDLALTRIGGNLVKGISGGERRRVSIAV 156
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398
+++ P K L +DE ++GLDS T +V L + + +++ + QP + F LFD +
Sbjct: 157 QLLWDP-KVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRI 214
Query: 399 LLLSEGHLVYQG 410
LLLS G +VY G
Sbjct: 215 LLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-42
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 506 ELFRTCFAREILLIQRHSFL-YIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCL 564
+ RE L R L ++R Q + V T+F G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 565 FFAVVHMMFNGFSEL-PIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWS 623
FF+++ F+ + + P+ I V ++ + + A+ +A ++ +P S+L+A+++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 624 CVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFL 683
+VYF VG RFF + +L A GL +A++A A+ LL + L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 684 MGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEF 719
+ GF IP +S+ W W Y+++PL+YA A+ NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-39
Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 38/217 (17%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYP--KE 906
K+ +L + SGV PG + ++G G+G +TL+ LA R T G +EGDI +G P +
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYKEF 77
Query: 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
+ YV + D+H P +TV E+L F+ + +EFV
Sbjct: 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC---------KGNEFV------------ 116
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R D
Sbjct: 117 ----------RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD 166
Query: 1027 -TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
T +++Q S +I++ FD++L++ GR IY G
Sbjct: 167 VLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-38
Identities = 81/294 (27%), Positives = 134/294 (45%), Gaps = 48/294 (16%)
Query: 161 KPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYK 220
K T L+ VS V+PG + LLGP +GK+TLL LAG L + SG I GY
Sbjct: 12 KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYD 68
Query: 221 LDEFH--VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI 278
+ + V+R Y+ Q + PELTVRE +F AR + L++ E E I
Sbjct: 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFAR-----------LYGLSKEEAEERI 117
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG 338
+ +L++ GL+ N +R +SGG K+R++
Sbjct: 118 ------------------------EELLELFGLED-----KANKKVRTLSGGMKQRLSIA 148
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398
++ + L +DE ++GLD + +I + LR + TIL++ E +L D +
Sbjct: 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLS-THILEEAEELCDRV 207
Query: 399 LLLSEGHLVYQGPRAEVLEFFESLGFQL--PPRKGVADFLQEVTSKKDQAQYWA 450
++L++G ++ +G E+ E F G P R +A+ L+ + K + +
Sbjct: 208 IILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 127 bits (323), Expect = 3e-33
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 25/217 (11%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907
P+ L ++S G +VG +G+GK+TL+ +L G G G++ + G +
Sbjct: 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTK 67
Query: 908 ST---FARISGYVEQNDIHSPQV-----TVEESLWFSA-NLRLSKEVSKNQRHEFVEEVM 958
+ R G V QN P TVEE + F NL L +E + +R VEE +
Sbjct: 68 LSLKELRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIE-ER---VEEAL 119
Query: 959 RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
LV L+ LRD LS Q++R+ IA L +P I+ +DEPT+GLD ++
Sbjct: 120 ELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL 174
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
++ G+T++ H + E D +++++ G
Sbjct: 175 ELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 18/216 (8%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKE 906
K + L VS PG+ L+G +GAGKTTLM +LA + G I + P++
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK 69
Query: 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
R GY+ Q P TV E L + A L K + + V+EV+ LV L
Sbjct: 70 ---LRRRIGYLPQEFGVYPNFTVREFLDYIAWL---KGIPSKEVKARVDEVLELVNLGDR 123
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
+G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 124 AKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELG 177
Query: 1027 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
R V+ + H D+ +++ ++ G++++ G
Sbjct: 178 EDRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 4e-30
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 20/197 (10%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA--RISGYVEQ 919
G + L+G +GAGKTT + +L G R T G I+GY A + GY Q
Sbjct: 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQSLGYCPQ 82
Query: 920 NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGL 979
D ++TV E L F A L K + K++ E VE ++R++ L + L
Sbjct: 83 FDALFDELTVREHLRFYARL---KGLPKSEIKEEVELLLRVLGLTDKANKRART-----L 134
Query: 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1039
S +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+++ T H S
Sbjct: 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSIILTTH--S 191
Query: 1040 IDIFEAF-DELLLMKRG 1055
+D EA D + +M G
Sbjct: 192 MDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 8e-29
Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 27/217 (12%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L +VS PG A+VG +GAGK+TL+ + G + T G I++ G P E+ R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 913 ISGYVEQN---DIHSPQVTVEE----SLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS 965
I GYV Q D P ++V + L+ + L + +SK + + V+E + V L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLY--GHKGLFRRLSKADKAK-VDEALERVGLSE 124
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
L D +G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 125 LADRQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
G T++ H + + E FD +LL+ R V+ G
Sbjct: 180 REGMTILVVTHDLGL-VLEYFDRVLLLNR--TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 161 KPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYK 220
P + +L +VSG KPG +T ++GP +GKSTLL ALAG+ + L SG + NG
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRP 74
Query: 221 LDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQG 257
LD+ ++ Y+ Q D P LTVRET FAA+ +G
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG 111
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-27
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 21/218 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KEQST--F 910
+L ++S G +T ++G +G+GK+TL+ LAG G++ + G S
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKEL 74
Query: 911 ARISGYVEQNDIHSPQVTVEESLWFS--ANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
A+ YV Q+ +TV E + +L L SK E VEE + L+ L+ L D
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDE-EIVEEALELLGLEHLAD 133
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1027
V LS +R+R+ IA L I+ +DEPTS LD V+ +R+ +
Sbjct: 134 RPV-----DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188
Query: 1028 GRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYGG 1062
G TVV +H D+ A D L+L+K G V G
Sbjct: 189 GLTVVMVLH----DLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 25/220 (11%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KEQSTFA 911
+L ++S G +TAL+G +GAGK+TL+ + G G+IKI G P +++
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRL 75
Query: 912 RISGYVEQNDIHSPQ--VTVEE----SLWFSANL--RLSKEVSKNQRHEFVEEVMRLVEL 963
RI GYV Q +TV++ + RL+K + E V+E + V +
Sbjct: 76 RI-GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNK-----KDKEKVDEALERVGM 129
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
+ LRD +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 130 EDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
G+TV+ H + + FD ++ + R +I G
Sbjct: 185 LRQEGKTVLMVTHDLGL-VMAYFDRVICLNR--HLIASGP 221
|
Length = 254 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-25
Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 23/210 (10%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQST 909
+ L ++S PG AL+G SG GKTTL+ ++AG R G I ++G P E+
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER-- 71
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
R G V Q+ P +TV E++ F L+L V K + V E++ LV L+ L +
Sbjct: 72 --RNIGMVFQDYALFPHLTVAENIAFG--LKLRG-VPKAEIRARVRELLELVGLEGLLNR 126
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTG 1028
LS Q++R+ +A L PS++ +DEP S LDA+ + ++ + G
Sbjct: 127 YP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181
Query: 1029 RTVVCTIHQPSIDIFEAF---DELLLMKRG 1055
T + H D EA D + +M G
Sbjct: 182 ITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 15/214 (7%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTF 910
L +VS G L+G +G+GK+TL+ +L G + T G + D + K
Sbjct: 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77
Query: 911 ARISGYVEQN-DIHSPQVTVEESLWFSA-NLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
+ G V QN D TVE+ + F NL L +E + + V E + LV L+ L D
Sbjct: 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER----VAEALELVGLEELLD 133
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1027
LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++ +
Sbjct: 134 RPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
G+T++ H + E D ++++ G + G
Sbjct: 189 GKTIIIVTHDLE-LVLEYADRVVVLDDGKILADG 221
|
Length = 235 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 28/219 (12%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPK 905
+K+Q L VS G A+VG SG+GK+TL+++L G R T G + IS +
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSE 73
Query: 906 EQSTFAR---ISGYVEQNDIHS--PQVTVEESLWFSANLRLSKEVS---KNQRHEFVEEV 957
++ R I G+V Q+ + P +T E N+ L ++ K +R E EE+
Sbjct: 74 KELAAFRRRHI-GFVFQS--FNLLPDLTALE------NVELPLLLAGVPKKERRERAEEL 124
Query: 958 MRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
+ V L + S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 125 LERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1018 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
M +R + G T+V H P ++ E D ++ ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 20/210 (9%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKE 906
+K ++L ++S G + AL G +GAGKTTL +LAG +++ G I ++G P +
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPIK 65
Query: 907 QSTFARISGYVEQN-DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS 965
+ GYV Q+ D +V E L KE+ E E V++ ++L +
Sbjct: 66 AKERRKSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAGN--EQAETVLKDLDLYA 118
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
L++ P S LS Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 119 LKERH---PLS--LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
G+ V+ H + + D +LL+ G
Sbjct: 174 AQGKAVIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 99.4 bits (249), Expect = 8e-24
Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 53/210 (25%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--K 905
K L ++S G + L+G +GAGKTTL+ ++ G + G+IK+ G K
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKK 66
Query: 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS 965
E R GY+ + +TV E NL+LS
Sbjct: 67 EPEEVKRRIGYLPEEPSLYENLTVRE------NLKLSG---------------------- 98
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
G ++RL +A L+ +P ++ +DEPTSGLD + +R
Sbjct: 99 ------------G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
G+T++ + H + D + ++ G
Sbjct: 143 KEGKTILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 843 RSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIK 899
+ G+ +K++ L +V+ G A+VG SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 900 ISGYP-KEQSTFARIS-GYVEQNDIHS--PQVTVEESLWFSANLRLS---KEVSKNQRHE 952
++ KE + R G+V QN + P +TV E N+ L S +R
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLE------NVELPLLIAGKSAGRRKR 120
Query: 953 FVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
EE++ ++ L+ P LS Q++R+ IA L+ NP II DEPT LD++
Sbjct: 121 AAEELLEVLGLEDRLLKK--KPSE--LSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 1013 AAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057
A V+ +R + G+T++ H P ++ + D ++ +K G
Sbjct: 177 TAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 99.0 bits (248), Expect = 1e-23
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 49/213 (23%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQST 909
+L ++S G + ++G +GAGK+TL+ LAG + + G I ++ ++
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE-- 70
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
AR YV Q + L+ L L D
Sbjct: 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR 93
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1028
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R G
Sbjct: 94 PF-----NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG 148
Query: 1029 RTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+TVV +H ++ D ++L+K G V G
Sbjct: 149 KTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-22
Identities = 83/302 (27%), Positives = 130/302 (43%), Gaps = 48/302 (15%)
Query: 756 VGALLLYS--LLFNSVVTLALA---YLNPLRKSQVVIDDKEENSVKMAKQQFEI-NTTSA 809
+G LL L + L LA YL PLR+ + + V A+ F + +
Sbjct: 249 IGFRLLAGDLDLATGLFVLLLAPEFYL-PLRQLGAQYHARAD-GVAAAEALFAVLDAAPR 306
Query: 810 PESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTA 869
P +GK P L + +V Y P L VS PG A
Sbjct: 307 PLAGKAPVTAAPAPSLEFSGVSVAYPGRRP--------------ALRPVSFTVPPGERVA 352
Query: 870 LVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KEQSTFARISGYVEQNDIHSP 925
LVG SGAGK+TL+++L G EG I ++G P S +I +V Q+ P
Sbjct: 353 LVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQI-AWVPQH----P 405
Query: 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL-------VGFPGSSG 978
+ ++ + N+RL++ + + E + LD AL +G G +G
Sbjct: 406 FL-FAGTI--AENIRLAR---PDASDAEIREALERAGLDEFVAALPQGLDTPIG-EGGAG 458
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1038
LS Q +RL +A + + ++ +DEPT+ LDA A V+ +R + GRTV+ H+
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRA-LAQGRTVLLVTHRL 517
Query: 1039 SI 1040
++
Sbjct: 518 AL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 1e-22
Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 53/210 (25%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQST 909
+L++VS G + AL+G SG+GK+TL+ +AG G I ++ E
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPP 73
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
R G V Q+ P +TV E N+ L
Sbjct: 74 LRRRIGMVFQDFALFPHLTVLE------NIAL---------------------------- 99
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-G 1028
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G
Sbjct: 100 --------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151
Query: 1029 RTVVCTIHQPSIDIFEAF---DELLLMKRG 1055
TVV H D+ EA D +++++ G
Sbjct: 152 ITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-22
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 724 WKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKS 783
W K + T+G VL + L + YWYWIGVGALL +++LFN + TLAL YLNPL KS
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 784 QVVI 787
Q ++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 5e-22
Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Query: 324 IRGVSGGQKKRVTTG-EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
+RG+SGG++KRV+ E++ P LF+DE ++GLDSS+ Q++ LR TI+
Sbjct: 109 LRGLSGGERKRVSIALELVSNPS-LLFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIIC 166
Query: 383 ALLQPPPETFDLFDDLLLLSEGHLVYQG 410
++ QP E F+LFD LLLLS+G ++Y G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 5e-22
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 22/208 (10%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 911
+ ++S G L+G SG GKTTL+ ++AG + + G I I+ P E+
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK---- 76
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
R G V Q+ P +TVEE++ F L++ K++ K + VEE + LV L+ D
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1030
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T
Sbjct: 135 -----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 1031 VVCTIHQPSIDIFEAF---DELLLMKRG 1055
V H D EA D + +M G
Sbjct: 190 FVYVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 7e-22
Identities = 83/325 (25%), Positives = 142/325 (43%), Gaps = 63/325 (19%)
Query: 756 VGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQFE--INTTSAPESG 813
+G L+ +++L ++ R SQ+ D ++ K+A ++ ++T E
Sbjct: 409 LGQLVAFNMLAGYFISPIT------RLSQLWTDFQQ---AKVALERLGDILDTPPEQEGD 459
Query: 814 KKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGS 873
K + LP + F NV++ +L ++S PG A+VG
Sbjct: 460 KTL-IHLPKLQGEIEFENVSFRYGPDDPP-----------VLEDLSLEIPPGEKVAIVGR 507
Query: 874 SGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKEQ---STFARISGYVEQND------- 921
SG+GK+TL+ +L G Y +G I + G ++ R GYV Q+
Sbjct: 508 SGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSI 563
Query: 922 -----IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976
+ +P+ T EE + +L+ HEF+E L D VG G
Sbjct: 564 RENIALGNPEATDEEII---EAAQLA------GAHEFIEN------LPMGYDTPVGE-GG 607
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
+ LS QR+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+ H
Sbjct: 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAH 666
Query: 1037 QPSIDIFEAFDELLLMKRGGRVIYG 1061
+ S + D ++++ +G V G
Sbjct: 667 RLS--TIRSADRIIVLDQGKIVEQG 689
|
Length = 709 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD 222
K +LN++SG VKPG +T L+G +GK+TLL LAG+ + + G I NG LD
Sbjct: 16 KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT-GEILINGRPLD 74
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAA 253
+ + QR++ Y+ Q D H P LTVRE F+A
Sbjct: 75 K-NFQRSTGYVEQQDVHSPNLTVREALRFSA 104
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 2e-21
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L ++ G + AL+G++GAGK+TL+ L G R G + D + Y ++ R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 913 IS-GYVEQN---DIHSPQVTVEESLWFSA-NLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
G V Q+ + + V++ + F NL LS+ + V E + V LR
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEA----EVERRVREALTAVGASGLR 121
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 122 ERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1028 GRTVVCTIH 1036
G TVV + H
Sbjct: 177 GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-21
Identities = 76/320 (23%), Positives = 144/320 (45%), Gaps = 42/320 (13%)
Query: 754 IGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQFEINTTSAPESG 813
+G G L L++ LF V+ LA + PLR A + F + + G
Sbjct: 250 LGEGDLTLFAGLF--VLILAPEFFQPLRDLGSFFHAAA-AGEAAADKLFTLLESPVATPG 306
Query: 814 -KKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVG 872
+K + P+ ++ N+++ LS+++ G LTALVG
Sbjct: 307 SGEKAEVANEPPIEISLENLSF------------RYPDGKPALSDLNLTIKAGQLTALVG 354
Query: 873 SSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE---QSTFARISGYVEQNDIHSPQVTV 929
+SGAGK+TL+++L G +G+I+++G + + +V QN + T+
Sbjct: 355 ASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDLSPEAWRKQISWVSQNP-YLFAGTI 411
Query: 930 EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL------RDALVGFPGSSGLSTEQ 983
E N+ L++ + ++ + + L D ++G G +GLS Q
Sbjct: 412 RE------NILLARPDASDEE---IIAALDQAGLLEFVPKPDGLDTVIG-EGGAGLSGGQ 461
Query: 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1043
+RL +A L++ S++ +DEPT+ LDA I+++ ++ +TV+ H+ D
Sbjct: 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE-DAA 519
Query: 1044 EAFDELLLMKRGGRVIYGGK 1063
+A D ++++ GR++ G
Sbjct: 520 DA-DRIVVLDN-GRLVEQGT 537
|
Length = 559 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 31/223 (13%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKE 906
++K +L +++ PG A+VG +GAGKTTL+++L Y +G I I G
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIR 68
Query: 907 QSTFARIS---GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963
+ + G V Q D T+ E N+RL + + + E V E +
Sbjct: 69 DISRKSLRSMIGVVLQ-DTFLFSGTIME------NIRLGRPNATD---EEVIEAAKEAGA 118
Query: 964 DSL-------RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
D ++G LS +R+ L IA ++ +P I+ +DE TS +D +
Sbjct: 119 HDFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
+ + + GRT + H+ S I A D++L++ G++I
Sbjct: 178 IQEALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDD-GKII 216
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 3e-21
Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 61/204 (29%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 912
L NVS G + ALVG +G+GK ST R
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGK-----------------------------STLLR 43
Query: 913 -ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
I+G ++ + K+++K E + V
Sbjct: 44 AIAGLLK-----PTSGEIL---------IDGKDIAKLPLEELRRRI-----------GYV 78
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV
Sbjct: 79 -----PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTV 133
Query: 1032 VCTIHQPSIDIFEAFDELLLMKRG 1055
+ H P A D ++++K G
Sbjct: 134 IIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 90.5 bits (226), Expect = 1e-20
Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 65/232 (28%)
Query: 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLA 886
+ F NV++ P + +L +VS PG A+VG SG+GK+TL+ +L
Sbjct: 1 IEFKNVSF-----------SYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49
Query: 887 G--RKTGGYIE-GDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSK 943
T G I + + E + + YV Q+ P + FS
Sbjct: 50 RLYDPTSGEILIDGVDLRDLDLE--SLRKNIAYVPQD----PFL-------FS------- 89
Query: 944 EVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMD 1003
++R+ + LS QR+R+ IA L+ +P I+ +D
Sbjct: 90 --------------------GTIRENI--------LSGGQRQRIAIARALLRDPPILILD 121
Query: 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
E TS LD A+++ +R + G+TV+ H+ S D ++++ G
Sbjct: 122 EATSALDPETEALILEALRA-LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 91.3 bits (228), Expect = 2e-20
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 30/195 (15%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQ--- 907
L +VS PG + L+G +GAGKTTL ++++G R T G +G+ I+G P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHEIAR 74
Query: 908 ----------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEV 957
F ++ V +N + + Q L + R +E E EE+
Sbjct: 75 LGIGRTFQIPRLFPELT--VLENVMVAAQARTGSGLLLARARREEREA-----RERAEEL 127
Query: 958 MRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
+ V L L D G LS Q++RL IA L +P ++ +DEP +GL+ +
Sbjct: 128 LERVGLADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEEL 182
Query: 1018 MRTVRNTVDTGRTVV 1032
+R + G TV+
Sbjct: 183 AELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 3e-20
Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 18/224 (8%)
Query: 843 RSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKI 900
+ +K +Q + VS PG +T L+G +GAGKTT + +LAG G+ +
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----V 64
Query: 901 SGYPKEQSTFA--RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVM 958
G+ + R G+V + ++T E+L + A L K R +EE+
Sbjct: 65 DGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELA 121
Query: 959 RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
+ ++ L D VG G ST R+++ IA LV +P ++ +DEPT+GLD A +
Sbjct: 122 DRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
+R G+ ++ + H ++ D ++++ R GRV+Y G
Sbjct: 177 EFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 25/212 (11%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L ++S G ALVG SG GK+TL+ ++AG R T G++ + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGEPVTGPGPDR 75
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
GYV Q D P +TV +++ L+ V K + E EE++ LV L +A
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENA--- 127
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1031
+P LS R+R+ +A L +P ++ +DEP S LDA + + + +TG+TV
Sbjct: 128 YPHQ--LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTV 185
Query: 1032 VCTIHQPSIDIFEAF---DELLLM-KRGGRVI 1059
+ H DI EA D ++++ R GR++
Sbjct: 186 LLVTH----DIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQ 907
K ++L ++S G + +G +GAGKTT M ++ G + G I Y K
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNI 68
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
RI +E + P +T E+L A L R + ++EV+ +V L
Sbjct: 69 EALRRIGALIEAPGFY-PNLTARENLRLLARLLG-------IRKKRIDEVLDVVGLKDSA 120
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D
Sbjct: 121 KKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
G TV+ + H S +I + D + ++ G++I G
Sbjct: 176 GITVLISSHLLS-EIQKVADRIGII-NKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 4e-20
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 30/205 (14%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KEQSTFARISGYVEQN 920
G + +G +GAGKTT + +L R T G +++GY +E R G V Q
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVPQ- 73
Query: 921 DIHSPQVTVEESLWFSANLRLSKE---VSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977
+V+E L NL + + K++ E EE++ L EL D VG
Sbjct: 74 -----YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG----- 123
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
S R+RL IA L+ P ++F+DEPT+GLD R + +R + G T++ T H
Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH- 182
Query: 1038 PSIDIFEA---FDELLLMKRGGRVI 1059
+ EA D + ++ GR+I
Sbjct: 183 ---YMEEADKLCDRIAIIDH-GRII 203
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 4e-20
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 10/216 (4%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L ++S G L AL+G SGAGK+TL+ ++AG G I + ++ + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
G+V Q+ P +TV +++ F +R + S+ + VEE++RLV+L+ L D
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR--- 133
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1031
+P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G T
Sbjct: 134 YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 1032 VCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVH 1067
V H + E D ++++ +G G V+
Sbjct: 192 VFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVY 226
|
Length = 345 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 8e-20
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L +++ G A++G SG GK+TL+ ++AG + T G + D + P
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD----- 73
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
GYV Q D P +TV +++ LR SK + E +E++ LV L D
Sbjct: 74 -IGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDK--- 126
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1031
+P LS R+R+ IA L P ++ +DEP LDA + + +T +TV
Sbjct: 127 YPHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184
Query: 1032 VCTIHQPSIDIFEAF---DELLLMKRGGRVI 1059
+ H D+ EA D ++++ I
Sbjct: 185 LLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 9e-20
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 12/190 (6%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK--TGGYIE-GDIKISGYPKEQSTFA 911
L ++ S G LVG SGAGK+TL+ ++ + T G I +S +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 912 RIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
R G V Q+ P V E N+ + EV+ E + V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYE------NVAFALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
P + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1031 VVCTIHQPSI 1040
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 911
L S +S + G L G +G+GKTTL+ ++AG G IK+ G + A
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA----AGTIKLDGGDIDDPDVA 72
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
Y+ + P +TV E+L F A + + V L L
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFL-------GGEELDIAAALEAVGLAPLAHLPF 125
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
G+ LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G V
Sbjct: 126 GY-----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180
Query: 1032 VCTIHQPSIDIFEA 1045
+ H P + + A
Sbjct: 181 IAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-19
Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 25/209 (11%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 911
L +V+ G L+G SG GK+TL+ ++AG T G I ++ P E+
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
R V QN P +TV E++ F L+L V K + + V+EV +L+ L+ L +
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFG--LKLRG-VPKAEIDKRVKEVAKLLGLEHLLNRKP 131
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR 1029
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 1030 TVVCTIHQPSIDIFEA---FDELLLMKRG 1055
T + H D EA D +++M G
Sbjct: 186 TTIYVTH----DQVEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 9e-19
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 31/226 (13%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------PKEQS 908
L +VS +PG AL+G SGAGK+TL+ L G G + I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINKLKGKALR 74
Query: 909 TFARISGYVEQNDIHSPQVTVEE----------SLWFSANLRLSKEVSKNQRHEFVEEVM 958
R G + Q +++V E S W S L + K + +E V
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSL-FGLFPKEEKQRALAALERV- 132
Query: 959 RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
L++ R + LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 133 GLLDKAYQR--------ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM 184
Query: 1019 RTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
++ + G TV+ ++HQ + E D ++ +K GR+++ G
Sbjct: 185 DLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 9e-19
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 25/214 (11%)
Query: 857 NVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KEQSTFAR 912
VS G + L+G +GAGKTT + +L + T G ++G+ +E R
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRR 73
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
G V Q+ ++T E+L+ A L V +R E ++E++ V L D LV
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARL---YGVPGAERRERIDELLDFVGLLEAADRLVK 130
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 1031
S R+RL IA LV P ++F+DEPT GLD + A V + + G T+
Sbjct: 131 T-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185
Query: 1032 VCTIHQPSIDIFEA---FDELLLMKRGGRVIYGG 1062
+ T H + EA D + ++ GR+I G
Sbjct: 186 LLTTH----YMEEAEQLCDRVAIIDH-GRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-18
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 29/227 (12%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQST 909
Q L +V+ + G + A++G SGAGK+TL+ L G T G I + I+ ++
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 910 FARIS-GYVEQNDIHSPQVTVEE----------SLWFSANLRLSKEVSKNQRHEFVEEVM 958
R G + Q P+++V E S W S SKE K Q + +E V
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE-DKAQALDALERV- 135
Query: 959 RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
L A + +S LS Q++R+ IA LV P II DEP + LD +A VM
Sbjct: 136 -----GILDKA---YQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVM 187
Query: 1019 RTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
++ N D G TV+ +HQ +D+ + + + ++ + GR+++ G
Sbjct: 188 DILKDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYI--------EGDIKISGYPKEQSTFARI 913
+T + G+SGAGK+TL+ +AG + GG I + KI+ P++ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
G V Q P + V E+L F K + V+E++ L+ LD L +
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGL-----KRKRNREDRISVDELLDLLGLDHLLNR---- 127
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1032
+ LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVI 186
Query: 1033 CTIHQPSIDIFEAF---DELLLMKRGGRVIYGG 1062
H S EA D +++M GR+ Y G
Sbjct: 187 FVTHDLS----EAEYLADRIVVM-EDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 1e-18
Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYP 904
+++ + +VS G LVG SG+GK+TL +LAG + G I D+ ++G
Sbjct: 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG-- 359
Query: 905 KEQSTFARISGYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE 962
E R V Q+ S P++TV + L LR+ S +R V E++ LV
Sbjct: 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVG 417
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
L + L +P LS QR+R+ IA L P ++ +DEP S LD A V+ ++
Sbjct: 418 LP--PEFLDRYPHE--LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473
Query: 1023 NTVD-TGRTVVCTIHQPSIDIFEAF-DELLLMKRG 1055
+ + G T + H + + D + +M G
Sbjct: 474 DLQEELGLTYLFISH--DLAVVRYIADRVAVMYDG 506
|
Length = 539 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 23/218 (10%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYP-KE 906
K+Q + +VS G +T L+G +GAGKTTL+ ++A + G + I G
Sbjct: 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT-----LLIPDSGKVTIDGVDTVR 68
Query: 907 QSTFAR--ISGYVEQNDIHSPQVTVEESLWFSANLR-LSKEVSKNQRHEFVEEVMRLVEL 963
+F R I + +++ ++T E+L + A L LS++ K + + E+ + ++L
Sbjct: 69 DPSFVRRKIGVLFGERGLYA-RLTARENLKYFARLNGLSRKEIKAR----IAELSKRLQL 123
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
D VG ST ++++ IA LV +PSI+ +DEPTSGLD R ++
Sbjct: 124 LEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ GR V+ + H ++ D ++++ +G V+ G
Sbjct: 179 LKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 17/212 (8%)
Query: 853 QLLSNVSGVFS--PGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKE 906
+ L +VS FS G LVG SG+GK+TL + G + T G +G + +
Sbjct: 19 KALDDVS--FSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76
Query: 907 QSTFARISGYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD 964
+ + V Q+ + S P++T+ E + K K R E V ++ V L
Sbjct: 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL-RIHGKLSKKEARKEAVLLLLVGVGLP 135
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1023
+ L +P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 136 --EEVLNRYPHE--LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ G T++ H + A D + +M G
Sbjct: 192 QEELGLTLLFITHDLGVVAKIA-DRVAVMYAG 222
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-18
Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKEQST-- 909
+ +V+ G L+G SG+GKTT + + IE G+I I G ++ S
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDG--EDISDLD 69
Query: 910 --FARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
R GYV Q P +TV E++ L K + + +E++ LV LD
Sbjct: 70 PVELRRKIGYVIQQIGLFPHLTVAENIATVPKL---LGWDKERIKKRADELLDLVGLDP- 125
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRN 1023
+ +P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 126 SEYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK 183
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYG 1061
G+T+V H DI EA D + +M G V Y
Sbjct: 184 E--LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYD 218
|
Length = 309 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 6e-18
Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEG-DIKISGYPKEQ 907
+L V G + A++G SG+GK+TL+ ++ G R G I+G DI E
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI-SGLSEAEL 72
Query: 908 STFARISGYVEQNDIHSPQVTVEE--SLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS 965
R G + Q+ +TV E + + RLS+E + E V E + V L
Sbjct: 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR----EIVLEKLEAVGLRG 128
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
D +P LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R+
Sbjct: 129 AEDL---YPAE--LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLK 183
Query: 1026 DT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
G T + H F D + ++ G V G
Sbjct: 184 KELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 8e-18
Identities = 66/214 (30%), Positives = 107/214 (50%), Gaps = 22/214 (10%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKEQS---T 909
L +VS PG AL+G +GAGK+TL +L T Y+ EG I ++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
AR+ G V Q ++V ++L + A L +S+ + + E++ + L D
Sbjct: 73 LARL-GVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGLAERADD 128
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1028
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1029 RTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
+V+ H +D EA D L+++ R GRV+ G
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHR-GRVLADG 214
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 2e-17
Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 61/256 (23%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
F + L+D+S +K G L++GP SGKSTLL L G L SG + +G
Sbjct: 7 FSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGK 63
Query: 220 KLDE---FHVQRTSAYISQ-TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275
L + ++R + Q D+ TV E F N G E+E
Sbjct: 64 DLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE----NLGLP---------EEE 110
Query: 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
R + L+++GL+ + +SGGQK+RV
Sbjct: 111 IEER----------------------VEEALELVGLEGLRDRS-----PFTLSGGQKQRV 143
Query: 336 TTGEMIV-GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA-----LLQPPP 389
++ P L +DE + GLD + ++++ L+ TI++ LL
Sbjct: 144 AIAGVLAMDP-DILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLL---- 197
Query: 390 ETFDLFDDLLLLSEGH 405
+L D +++L +G
Sbjct: 198 --LELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 31/228 (13%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------KE 906
Q L N++ +PG A++G SGAGK+TL+ + G I + G K+
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKK 73
Query: 907 QSTFARISGYVEQNDIHSPQVTVEE----------SLWFSANLRLSKEVSKNQRHEFVEE 956
R G + Q+ ++TV E W S R S+E K + +E
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE-DKERALSALER 132
Query: 957 VMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
V L + R + LS Q++R+ IA L P +I DEP + LD + +
Sbjct: 133 V-GLADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 1017 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
VM ++ + G TV+ +HQ +D+ + + + ++ + G +++ G
Sbjct: 184 VMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 19/196 (9%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQS 908
+L +++ G + A++G SG+GK+TL++++ + G Y+ G K+ S
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 909 TFARIS-GYVEQNDIHSPQVTVEESLWFSANLRLS---KEVSKNQRHEFVEEVMRLVELD 964
F R GY+ QN TVEE NL L K++SK ++ E +E + V L+
Sbjct: 72 KFRREKLGYLFQNFALIENETVEE------NLDLGLKYKKLSKKEKREKKKEALEKVGLN 125
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
+ LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 126 LKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL 180
Query: 1025 VDTGRTVVCTIHQPSI 1040
D G+T++ H P +
Sbjct: 181 NDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 24/180 (13%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGG--YIEGDIKIS 901
L ++S G +TAL+G SG GK+TL+ D++ G G ++G I
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK-DIY 70
Query: 902 GYPKEQSTFARISGYVEQNDIHSPQV---TVEESLWFSANLRLSKEVSKNQRHEFVEEVM 958
+ R G V Q P ++ +++ + LRL K + E VEE +
Sbjct: 71 DLDVDVLELRRRVGMVFQ----KPNPFPGSIYDNV--AYGLRLHGIKLKEELDERVEEAL 124
Query: 959 RLVEL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
R L D ++D L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 125 RKAALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 71/225 (31%), Positives = 104/225 (46%), Gaps = 39/225 (17%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYP-KEQST 909
++N++ + G L+G SG+GKTT M + IE G+I I G +EQ
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 910 FA--RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD--S 965
R GYV Q P +TVEE++ + +L K K + E +E++ LV LD
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI--ALVPKLLKW-PKEKIRERADELLALVGLDPAE 127
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT----- 1020
D +P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 128 FADR---YPHE--LSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEE 177
Query: 1021 -VRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYG 1061
R + G+T+V H DI EAF D + +MK G V G
Sbjct: 178 FKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVG 218
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 911
L S++S + G + G +GAGKTTL+ +LAG R G + + + ++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVRESYH 74
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
+ Y+ ++T E NL + + + E + V L L D V
Sbjct: 75 QALLYLGHQPGIKTELTALE------NLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPV 128
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
G LS Q++R+ +A ++ + +DEP + LD A++ + G V
Sbjct: 129 GQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV 183
Query: 1032 VCTIHQP 1038
+ T HQP
Sbjct: 184 LLTTHQP 190
|
Length = 209 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 5e-17
Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KEQST 909
+L ++S +PG A+VG +GAGKTTL+ +L G GD+ + G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGETIFE 103
Query: 910 FARISGYV--EQNDIHSPQVTVEE---SLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD 964
+ G V E ++ + TV + S +F++ ++++ + ++ L+
Sbjct: 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAA-AQWLLELLGAK 162
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-- 1022
L D G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 163 HLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064
++ H +I F LL+K G V+ GKL
Sbjct: 218 AASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQGKL 257
|
Length = 257 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 7e-17
Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 48/210 (22%)
Query: 153 ILTGLR-IFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKS 211
+ L +K ++D+S V G + LLG +GK+T L L G+L + S
Sbjct: 2 QIRNLTKTYKKGTK--PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---S 56
Query: 212 GNITYNGYKL--DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDL 269
G NGY + D +++ Y Q D ELTVRE F AR +G L
Sbjct: 57 GTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG-----------L 105
Query: 270 NRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSG 329
+ E + + + +L+VLGL T N R +SG
Sbjct: 106 PKSEIKEEV------------------------ELLLRVLGL-----TDKANKRARTLSG 136
Query: 330 GQKKRVTTGEMIVGPRKTLFMDEISTGLDS 359
G K++++ ++G L +DE ++GLD
Sbjct: 137 GMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 8e-17
Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 24/215 (11%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI----EGDIKISGYPKEQS 908
L ++S G + L+G +GAGKTT + ++ G I G++ G P + +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIA 67
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLR-LSKEVSKNQRHEFVEEVMRLVELDSLR 967
RI GY+ + P++ V + L + A L+ L KE ++ + E++E + EL
Sbjct: 68 ARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERL----ELSEYA 122
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ V LS ++++ ++ +P ++ +DEP SGLD ++ +R
Sbjct: 123 NKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177
Query: 1028 GRTVVCTIHQPSIDIFEAF-DELLLMKRGGRVIYG 1061
G+TV+ + HQ +++ E D +LL+ +G V+YG
Sbjct: 178 GKTVILSTHQ--MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 8e-17
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 911
L +VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKE-VSKNQRHEFVEEVMRLVELDSLRDAL 970
R G+V Q+ +TV +++ F ++ E + + V E+++LV+LD L D
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1029
+P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 133 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 1030 TVVCTIHQPSIDIFEAFDELLLMKRG 1055
T V H + E D +++M +G
Sbjct: 189 TTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 9e-17
Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKEQSTFA 911
L VS PG A++G SG+GK+TL+ LAG G + +S Q
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD--QDEVR 408
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSK-EVSKNQRHEFVEEVMRLVE-------L 963
R Q D H TV E NLRL++ + + EE+ +E L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRE------NLRLARPDATD-------EELWAALERVGLADWL 454
Query: 964 DSLRDAL---VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
+L D L +G G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 455 RALPDGLDTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 1021 VRNTVDTGRTVVCTIHQP 1038
+ +GRTVV H
Sbjct: 514 LLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 66/266 (24%), Positives = 107/266 (40%), Gaps = 63/266 (23%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG----YKLDEF 224
L DVS ++ G LL+GP SGKSTLL L G L SG + +G +
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL---KPTSGEVLVDGLDTSSEKSLL 75
Query: 225 HVQRTSAYISQT-DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
+++ + Q D+ + TV + F N G L R E E +
Sbjct: 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE----NLG-------LPREEIEERV----- 119
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVT-TGEMIV 342
L+++GL+ + +SGGQK+RV G + +
Sbjct: 120 -------------------AEALELVGLEELLDR-----PPFNLSGGQKQRVAIAGVLAM 155
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL------FD 396
GP + L +DE + GLD ++++ L+ + TI++ T DL D
Sbjct: 156 GP-EILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-------THDLELVLEYAD 207
Query: 397 DLLLLSEGHLVYQGPRAEVLEFFESL 422
+++L +G ++ G AE+ E L
Sbjct: 208 RVVVLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-16
Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 32/269 (11%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-----ISGYPK 905
+ +VS PG + +VG SG+GK+TL L G + G G++ + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 906 EQST--FARISGYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
+ + + Q+ + S P +T+ + + LRL + S+ + + E++ V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI--REALRLHGKGSRAEARKRAVELLEQV 140
Query: 962 ELDS--LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
L RD +P LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR---YP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD 195
Query: 1020 TVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQAL 1078
+++ + G V+ H + + E D +++M +G V G + S Y + L
Sbjct: 196 LLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGL 254
Query: 1079 ----------DGIPSIPSGYNPATWMLEV 1097
I G A +L V
Sbjct: 255 LAAVPRLGDEKIIRLPRRGPLRAEPLLSV 283
|
Length = 539 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 22/219 (10%)
Query: 846 GIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKI----- 900
G + Q+L +++ +PG + L G SG+GKTTL+ ++ G ++ EG +K+
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQEL 69
Query: 901 SGYPKEQSTFARIS-GYVEQ--NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEV 957
G +++ R + GY+ Q N + +T +++ + L L +S + E +
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAM 125
Query: 958 MRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
+ V L D L +P LS Q++R+ IA LV P ++ DEPT+ LD+++ V
Sbjct: 126 LEAV---GLGDHLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180
Query: 1018 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ ++ + G T++ H I + D ++ M+ G
Sbjct: 181 VELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 29/221 (13%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907
K L +VS + G L ++G SG GKTTL++++AG T G I+++G E
Sbjct: 14 EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEG 71
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
R G V QN+ P + V +++ F LR + K QR E +++ LV L+
Sbjct: 72 PGAER--GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAE 126
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-- 1025
+ LS R+R+ IA L P ++ +DEP LD A+ ++ +
Sbjct: 127 HKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD----ALTREQMQELLLD 177
Query: 1026 ---DTGRTVVCTIHQPSIDIFEAF---DELLLMKRG-GRVI 1059
+TG+ V+ H DI EA L+++ G GRV+
Sbjct: 178 LWQETGKQVLLITH----DIEEALFLATRLVVLSPGPGRVV 214
|
Length = 259 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 2e-16
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 55/206 (26%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 911
+L NVS PG A++G SG+GK+TL ++ G R T G +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV----------------- 59
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL--DSLRDA 969
R+ G + S W L + V + + EL S+ +
Sbjct: 60 RLDG-------------ADISQWDPNELG-----------DHVGYLPQDDELFSGSIAEN 95
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029
+ LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 96 I--------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGA 147
Query: 1030 TVVCTIHQPSIDIFEAFDELLLMKRG 1055
T + H+P + D +L+++ G
Sbjct: 148 TRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKE 906
K ++++ VS G + L+G +GAGKTT ++ G + G I I+ P
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70
Query: 907 QSTFARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKE---VSKNQRHEFVEEVMRLVE 962
+ AR+ GY+ Q ++TVEE N+ E +SK +R E +EE++
Sbjct: 71 KR--ARLGIGYLPQEASIFRKLTVEE------NILAVLEIRGLSKKEREEKLEELLEEFH 122
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
+ LR + +S LS +R+R+ IA L NP + +DEP +G+D A + + ++
Sbjct: 123 ITHLRKSK-----ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177
Query: 1023 NTVDTGRTVVCTIH 1036
D G V+ T H
Sbjct: 178 ILKDRGIGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 48/249 (19%)
Query: 829 FHNVNY-YVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG 887
F NV++ Y + L NVS G A++G G+GK+TL+ +LAG
Sbjct: 5 FRNVSFSYPNQEIPA------------LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG 52
Query: 888 RKTGGYI--EGDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLS 942
Y G + + G Q + R GYV Q D+ T+ + N+ L
Sbjct: 53 L----YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRD------NITLG 101
Query: 943 KEVSKNQRHEFVEEVMRLVELDSLRDALVGFP---------GSSGLSTEQRKRLTIAVEL 993
++ ++R ++R EL + D + P GLS QR+ + +A L
Sbjct: 102 APLADDER------ILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155
Query: 994 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053
+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D +++M
Sbjct: 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVM- 211
Query: 1054 RGGRVIYGG 1062
GR++ G
Sbjct: 212 DSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 3e-16
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 31/222 (13%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTF 910
++ V PG LT L+G +G+GK+TL+ +LAG R G ++ + + G +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 911 ARISGYVEQNDIHSPQVTVEE----------SLWFSANLRLSKEVSKNQRHEFVEEVMRL 960
AR VEQ+ + +TV + SLW V+ +
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW---------AGDSPHDAAVVDRALAR 124
Query: 961 VELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
EL L D + S LS +R+R+ +A L P ++ +DEPT+ LD RA +
Sbjct: 125 TELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
VR TG TVV +H +++ ++ + +++ GGRV+ G
Sbjct: 180 VRELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 27/224 (12%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---ST 909
+LL VS PG + A++G +GAGK+TL+ L+G + G++ ++G P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFSA-NLRLSKEVSKNQRHEFVEEVMRLVELDSL-- 966
AR + QN + TV+E + R +E +++R + + +L L
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDER--IAAQALAATDLSGLAG 130
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRT 1020
RD LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 131 RDYRT-------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGRVIYGGK 1063
R G V+ +H +++ + D ++L+ + GRVI G
Sbjct: 184 ARQLAREGGAVLAVLH--DLNLAAQYADRIVLLHQ-GRVIASGS 224
|
Length = 259 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 4e-16
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KEQSTFARIS-GYVEQND 921
G L+G +GAGKTT + +L G G I + G P ++ AR G V Q D
Sbjct: 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRVGVVPQFD 89
Query: 922 IHSPQVTVEESLW-FSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980
P TV E+L F LS V ++ +L++ DA VG LS
Sbjct: 90 NLDPDFTVRENLLVFGRYFGLSAA----AARALVPPLLEFAKLENKADAKVG-----ELS 140
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++ T H
Sbjct: 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 5e-16
Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 34/227 (14%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYP- 904
K +L ++S PG A+VG SG+GK+TL+ +L + G+I I G
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR-----LYDPTSGEILIDGIDI 393
Query: 905 ---KEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
S RI G V Q D T+ E N+ L + + E +EE ++L
Sbjct: 394 RDISLDSLRKRI-GIVSQ-DPLLFSGTIRE------NIALGRP---DATDEEIEEALKLA 442
Query: 962 ELDSL-------RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
D +VG LS QR+RL IA L+ NP I+ +DE TS LD
Sbjct: 443 NAHEFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETE 501
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
A++ ++ + GRT + H+ S + D ++++ G V G
Sbjct: 502 ALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 55/192 (28%), Positives = 82/192 (42%), Gaps = 16/192 (8%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------KEQS 908
L +VS G L G SGAGKTTL+ +L G T G ++I+G ++
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
R G V Q+ P TV E N+ L EV + E V + L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYE------NVALPLEVRGKKEREIQRRVGAALRQVGLEH 129
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
FP LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1029 RTVVCTIHQPSI 1040
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 6e-16
Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 49/255 (19%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-- 225
IL+D+S + G +T +LGP SGKSTLL LAG L KSG + +G +
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL---KPKSGEVLLDGKDIASLSPK 72
Query: 226 -VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+ + AY+ Q+ + LTV ++ G ++ R KE +
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTV---YELVLL------GRYPHLGLFGRPSKE-------DE 116
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV---SGGQKKRVTTGEMI 341
+ +A L++LGL+ ++ R V SGG+++RV +
Sbjct: 117 EIVEEA---------------LELLGLEHLAD--------RPVDELSGGERQRVLIARAL 153
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401
L +DE ++ LD + ++++ LR+ + T++M L D L+LL
Sbjct: 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMV-LHDLNLAARYADHLILL 212
Query: 402 SEGHLVYQGPRAEVL 416
+G +V QG EVL
Sbjct: 213 KDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 6e-16
Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 39/226 (17%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQS 908
+L N+S PG + +VG SG+GK+TL ++ Y+ G + + G+ + +
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLALADPA 72
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSA----NLRLSKEVSKNQRHEFVEEVMRLV--- 961
R G V Q E++ F+ N+ L+ +R V E +L
Sbjct: 73 WLRRQVGVVLQ-----------ENVLFNRSIRDNIALADPGMSMER---VIEAAKLAGAH 118
Query: 962 ----ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
EL D +VG G+ GLS QR+R+ IA L+ NP I+ DE TS LD + +
Sbjct: 119 DFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
MR + + GRTV+ H+ S + A D +++M+ GR++ G
Sbjct: 178 MRNMHDICA-GRTVIIIAHRLST-VKNA-DRIIVME-KGRIVEQGS 219
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 7e-16
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 51/234 (21%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYN 217
+I+ + L DV+ ++ G ++GP SGKST LL L G LD SG + N
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDK--PTSGEVLIN 65
Query: 218 GYKLDEFHVQRTSA-------YISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLN 270
G L + + + ++ Q N +P+LTV E N I +
Sbjct: 66 GKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLE-----------NVELPLLIAGKS 114
Query: 271 RLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330
++R + +L+VLGL E + +SGG
Sbjct: 115 AGRRKRAA------------------------EELLEVLGL----EDRLLKKKPSELSGG 146
Query: 331 QKKRVTTGEMIVGPRKTLFMDEISTG-LDSSTTFQIVKCLRNFVHQMDATILMA 383
Q++RV ++ K + DE TG LDS T ++++ LR + TI+M
Sbjct: 147 QQQRVAIARALINNPKIILADEP-TGNLDSKTAKEVLELLRELNKERGKTIIMV 199
|
Length = 226 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 7e-16
Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 23/220 (10%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYP 904
+ L +VS G + ++G SGAGK+TL+ ++ R T G +++G ++
Sbjct: 16 TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ-DLTALS 74
Query: 905 -KEQSTFARISGYVEQ--NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
E + G + Q N + S TV E++ F L L+ V K + + V E++ LV
Sbjct: 75 EAELRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELAG-VPKAEIKQRVAELLELV 129
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRT 1020
L D +P + LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 130 GLSDKADR---YP--AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELL 184
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGRVI 1059
+ G T+V H+ +++ + D + ++ + GR++
Sbjct: 185 KDINRELGLTIVLITHE--MEVVKRICDRVAVLDQ-GRLV 221
|
Length = 339 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 8e-16
Identities = 59/267 (22%), Positives = 101/267 (37%), Gaps = 65/267 (24%)
Query: 154 LTGLR-IFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSG 212
L L + + L VS ++ G ++GP SGKST LL + G LD SG
Sbjct: 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKST-LLNILGGLDRP--TSG 59
Query: 213 NITYNGYKLDEFHVQRTSA-------YISQTDNHIPELTVRETFDFAARWQGANEGFAAY 265
+ +G + + + +A ++ Q+ N +P+LT E + G
Sbjct: 60 EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG-------- 111
Query: 266 INDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD-----LCSETVVG 320
+ + E+ +L+ +GL SE
Sbjct: 112 ---VPKKERRERAE------------------------ELLERVGLGDRLNHYPSE---- 140
Query: 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG-LDSSTTFQIVKCLRNFVHQMDAT 379
+SGGQ++RV + K + DE TG LDS T ++++ LR + T
Sbjct: 141 ------LSGGQQQRVAIARALANDPKIILADE-PTGNLDSETGKEVMELLRELNKEAGTT 193
Query: 380 ILMALLQPPPETFDLFDDLLLLSEGHL 406
I++ PE + D ++ L +G +
Sbjct: 194 IVVVTHD--PELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 8e-16
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 13/200 (6%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKE 906
K +++ +VS + G + L+G +GAGKTT ++ G R G I D IS P
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLH 73
Query: 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
I GY+ Q +++V ++L A L++ ++S QR + E+M ++ L
Sbjct: 74 ARARRGI-GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHL 130
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
RD++ G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D
Sbjct: 131 RDSM----GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185
Query: 1027 TGRTVVCTIH--QPSIDIFE 1044
+G V+ T H + ++ + E
Sbjct: 186 SGLGVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 67/257 (26%), Positives = 103/257 (40%), Gaps = 54/257 (21%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
+L D+S V+ G +T L+GP +GKSTLL A+ G L S SG I G + + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 228 RTSAYISQTDNHIPE--LTVRETFDFAA--RWQGANEGFAAYINDLNRLEKERNIRPSPE 283
Y+ Q + +TV+ D R+ RL K+ +
Sbjct: 75 LRIGYVPQKSSVDRSFPITVK---DVVLLGRY--------GKKGWFRRLNKK-------D 116
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGL-DLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
+ +A L+ +G+ DL + I +SGGQK+RV +
Sbjct: 117 KEKVDEA---------------LERVGMEDLR------DRQIGELSGGQKQRVLLARALA 155
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMAL--LQPPPETFDLFDDLLL 400
L +DE TG+D + +I L+ + T+LM L FD ++
Sbjct: 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG-KTVLMVTHDLGL---VMAYFDRVIC 211
Query: 401 LSEGHLVYQGPRAEVLE 417
L HL+ GP EVL
Sbjct: 212 L-NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 30/221 (13%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTL---MDVLAGRKTGG-YIEGDIKISGYPKEQSTF 910
L +VS G +T+++G +GAGK+TL M L + +G I+G ++++ P +
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG-LELTSTP-SKELA 74
Query: 911 ARISGYVEQNDIHSPQVTVEESLWFS----ANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
++S ++N I+S ++TV + + F + RL+KE + E + + L+ L
Sbjct: 75 KKLSILKQENHINS-RLTVRDLVGFGRFPYSQGRLTKE-----DRRIINEAIEYLHLEDL 128
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
D + LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 129 SDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD 183
Query: 1027 T-GRTVVCTIHQPSIDIFEA---FDELLLMKRGGRVIYGGK 1063
G+T+V +H DI A D ++ +K G+V+ G
Sbjct: 184 ELGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 35/227 (15%)
Query: 856 SNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR--KTGGYIEGDIKISGY-------PKE 906
+VS PG + +VG SG+GKTTL+ ++GR G + ++ E
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 907 QSTFARIS-GYVEQNDIHSPQVTVEESLWFSANL--RLSKEVSKNQRH-----EFVEEVM 958
+ R G+V QN ++ V N+ RL ++ RH ++ +
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAG----GNIGERL---MAIGARHYGNIRAEAQDWL 135
Query: 959 RLVELDSLR--DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
VE+D R D F G ++RL IA LV P ++FMDEPT GLD A
Sbjct: 136 EEVEIDLDRIDDLPRTFSGG------MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 189
Query: 1017 VMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
++ +R V + G VV H ++ A D L++MK+ G+V+ G
Sbjct: 190 LLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQ-GQVVESG 234
|
Length = 258 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 2e-15
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTF-- 910
L VS PG + AL+G +GAGK+TLM +L+G G+I I G P S+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKPVAFSSPRD 79
Query: 911 ARISG----YVEQNDIHSPQVTVEESLWFSANLRLSKEVSK-----NQR--HEFVEEVMR 959
A +G + E + + P ++V E N+ L +E ++ +++ E++
Sbjct: 80 ALAAGIATVHQELSLV--PNLSVAE------NIFLGREPTRRFGLIDRKAMRRRARELLA 131
Query: 960 LVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
+ LD D LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058
+R G ++ H+ ++FE D + +++ G V
Sbjct: 187 LIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 63/210 (30%), Positives = 93/210 (44%), Gaps = 27/210 (12%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQSTF 910
L +++ + G L+G SG GKTT + ++AG T G YI G PK+
Sbjct: 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD---- 71
Query: 911 ARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
R V QN P +TV +++ F LR + ++R V EV L++++ L D
Sbjct: 72 -RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRK 127
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTG 1028
LS QR+R+ + +V P + MDEP S LDA+ + MR R G
Sbjct: 128 P-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK-LRVQMRAELKRLQQRLG 181
Query: 1029 RTVVCTIHQPSIDIFEAF---DELLLMKRG 1055
T + H D EA D + +M G
Sbjct: 182 TTTIYVTH----DQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 16/187 (8%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 911
L +S + G + G +G GKTTL+ +LAG R G + + +++
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQRDEPH 72
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
R Y+ P+++ E+L F A + + + +E+ + V L D
Sbjct: 73 RNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT-------IEDALAAVGLTGFEDLPA 125
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
LS Q++RL +A ++ + +DEPT+ LD A++ +R + G V
Sbjct: 126 AQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180
Query: 1032 VCTIHQP 1038
+ T HQ
Sbjct: 181 LLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-15
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 19/194 (9%)
Query: 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQS 908
L +++VS PG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLR------LSKEVSKNQRHEFVEEVMRL-- 960
I Q P +TV E++ A+ R L + ++ + E E L
Sbjct: 77 ARLGI-ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135
Query: 961 -VELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
V L L D G LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 136 FVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190
Query: 1020 TVRNTVDT-GRTVV 1032
+R D G T++
Sbjct: 191 LIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-15
Identities = 57/176 (32%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 844 SQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKIS 901
G + L+NVS G +VG SG+GK+TL +LAG + + G I +
Sbjct: 12 VYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLD 67
Query: 902 GYP----KEQSTFARISGYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVE 955
G P K F R V Q+ S P+ TV L S LR QR +
Sbjct: 68 GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQR---IA 122
Query: 956 EVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
E++ V L L P LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 123 ELLDQVGLPP--SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 43/229 (18%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 905
+L +VS G A+VG SG+GK+T++ DV +G I+G I
Sbjct: 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI---LIDG-QDIREV-- 68
Query: 906 EQSTFARISGYVEQNDIHSPQVTV--EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963
+ R G V PQ TV +++ + N+R + + + EEV+ +
Sbjct: 69 TLDSLRRAIGVV-------PQDTVLFNDTIGY--NIRYGRPDATD------EEVIEAAKA 113
Query: 964 DSLRDALVGFP-------GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
+ D ++ FP G G LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 114 AQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE 173
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ +R V GRT + H+ S I A D+++++K GR++ G
Sbjct: 174 REIQAALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLK-DGRIVERGT 218
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 4e-15
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 15/218 (6%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQSTFA 911
L NVS G ++G +G+GK+ L++ +AG + G I + K I+ P E+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI- 73
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
YV QN P +TV +++ + R V K + V E+ ++ +D L +
Sbjct: 74 ---SYVPQNYALFPHMTVYKNIAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNR-- 125
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
P + LS +++R+ IA LV NP I+ +DEP S LD R + ++
Sbjct: 126 -KPET--LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 1032 VCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSK 1069
V + + + D++ +M G + G V K
Sbjct: 183 VLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 5e-15
Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 23/190 (12%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 907
K Q+L VS G + AL+G +GAGKTTL+ + G G I I+G P
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP--- 68
Query: 908 STFARIS---GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEF-VEEVMRLV-E 962
R GYV + P++TVEE NL L + + + +E V L
Sbjct: 69 -PHERARAGIGYVPEGRRIFPELTVEE------NLLLGAYARRRAKRKARLERVYELFPR 121
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
L R L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 122 LKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR 176
Query: 1023 NTVDTGRTVV 1032
D G T++
Sbjct: 177 ELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 27/213 (12%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L +++ G L ++G SG GKTTL++++AG Y G I + G P E R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFP 974
G V QN+ P V++++ F L V K QR E ++++ V L+ +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 1030
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1031 VVCTIHQPSIDIFEAF---DELLLMKRG-GRVI 1059
V+ H DI EA EL+L+ G GRV+
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-15
Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 22/215 (10%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGY-P-KEQSTF 910
L +S G + +G +GAGKTT + +L+G + T G+++++G P K + F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKF 92
Query: 911 -ARISGYVEQNDIHSPQVTVEESLWFSANL-RLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
RI Q + V +S + A + L K + E E L++L+ L D
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSE----LLDLEELLD 148
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1027
V LS QR R IA L+ P I+F+DEPT GLD A + ++ +
Sbjct: 149 TPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
G TV+ T H DI EA +L+ GR++Y G
Sbjct: 204 GTTVLLTSHYMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 8e-15
Identities = 63/258 (24%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 820 LPFQPLAMTFHNVNYYVDMPQAMRSQGI----PEKKLQLLSNVSGVFSPGVLTALVGSSG 875
+ Q +TF + QA+ + + P ++ + L N + + G A++G SG
Sbjct: 316 ILDQKPEVTFPDEQTATT-GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSG 374
Query: 876 AGKTTLMDVLAGRKTGGYIEGDIKISGYP----KEQSTFARISGYVEQNDIHSPQVTVEE 931
+GK+TL+ +LAG +G I ++G EQ+ IS V +H T+ +
Sbjct: 375 SGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALRETIS--VLTQRVHLFSGTLRD 430
Query: 932 SLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFP-----GSSGLSTEQRK 985
NLRL+ + E + ++ V L L A G G LS +R+
Sbjct: 431 ------NLRLAN---PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1045
RL +A L+ + + +DEPT GLD V+ + + G+T++ H+ E
Sbjct: 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLER 538
Query: 1046 FDELLLMKRGGRVIYGGK 1063
D ++++ G + G
Sbjct: 539 MDRIIVLDNGKIIEEGTH 556
|
Length = 573 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 76/249 (30%), Positives = 112/249 (44%), Gaps = 33/249 (13%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STF 910
LL +S F G +T L+G +G+GK+TL+ +L GR EG+I + P E F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 911 ARISGYVEQNDIHSPQVTVEESL------WFSANLRLSKEVSKNQRHEFVEEVMRLVELD 964
AR Y+ Q + +TV E + W A R E VEE + LV L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAA-----DREKVEEAISLVGLK 138
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1023
L LV LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQA--LDGI 1081
+ + G TV+ +H I++ + + L+ RGG +I G T + + L+ I
Sbjct: 194 SQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQG-------TPAELMRGETLEQI 244
Query: 1082 PSIPSGYNP 1090
IP G P
Sbjct: 245 YGIPMGILP 253
|
Length = 265 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 30/222 (13%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTF 910
+ L ++ G + AL+G +GAGK+TL G + T G + + Y K+
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75
Query: 911 ARIS-GYVEQN---DIHSPQVTVEESLWFSA-NLRLSKEVSKNQRHEFVEEVMRLVELDS 965
R + G V QN + +P TVEE + F NL LSKE EV + V+ ++
Sbjct: 76 VRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-----------EVEKRVK-EA 121
Query: 966 LRDALVGFPGSSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
L+ VG G LS Q+KR+ IA L P II +DEPTSGLD A+ +M+
Sbjct: 122 LKA--VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKL 179
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
+ + G T++ + H +D+ + + + + G++I G
Sbjct: 180 LYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---- 904
+ ++L VS G + A+VGSSG+GK+TL+ +L G G++ +G
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKL 72
Query: 905 --KEQSTFARIS-GYVEQNDIHSPQVTVEESLWFSANL-RLSKEVSKNQRHEFVEEVMRL 960
E++ G++ Q P T E++ + + S + +K + +E +E+V
Sbjct: 73 SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKV--- 129
Query: 961 VELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--- 1017
L + P S LS +R+R+ IA LV PS++ DEPT LD A I+
Sbjct: 130 ----GLEHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056
M + ++T VV H ++ + D +L MK G
Sbjct: 184 MLELNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 66/245 (26%), Positives = 100/245 (40%), Gaps = 46/245 (18%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
+L DVS VKPG ++GP +GKSTLL A+ G L SG+I G L++ +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEK--ER 67
Query: 228 RTSAYISQTDNHIPE--LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
+ Y+ Q + + ++VR D G + RL K
Sbjct: 68 KRIGYVPQRRSIDRDFPISVR---DVVLM------GLYGHKGLFRRLSKAD--------- 109
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
K V D L+ +GL + + + I +SGGQ++RV +V
Sbjct: 110 -----------KAKV--DEALERVGL-----SELADRQIGELSGGQQQRVLLARALVQDP 151
Query: 346 KTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405
L +DE G+D T I + LR + + TIL+ + FD +LLL
Sbjct: 152 DLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGL-VLEYFDRVLLL-NRT 208
Query: 406 LVYQG 410
+V G
Sbjct: 209 VVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 32/221 (14%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KEQSTF 910
+++ +S + G L+G +GAGK+T+ ++ G + G I + G P + +
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLAR 113
Query: 911 ARISGYVEQNDIHSPQVTVEESL-----WFSANLRLSKEVSKNQRHEFVEEVMRLVELDS 965
ARI G V Q D + TV E+L +F + R + V + ++ L+S
Sbjct: 114 ARI-GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV--------IPSLLEFARLES 164
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
DA V S LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ +
Sbjct: 165 KADARV-----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDEL---LLMKRGGRVIYGGK 1063
G+T++ T H E + L L + GR I G+
Sbjct: 220 ARGKTILLTTH-----FMEEAERLCDRLCVLEAGRKIAEGR 255
|
Length = 340 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 22/201 (10%)
Query: 869 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS---GYVEQN---DI 922
A++G +GAGK+TL G G + I G P + + G V QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 923 HSPQVTVEESLWFS-ANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
SP TVE+ + F NL L +E ++ V + ++ L+ LRD + LS
Sbjct: 92 FSP--TVEQDIAFGPINLGLDEETVAHR----VSSALHMLGLEELRDRV-----PHHLSG 140
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSI 1040
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 141 GEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200
Query: 1041 DIFEAFDELLLMKRGGRVIYG 1061
+ E D + +M +G V YG
Sbjct: 201 -VPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 18/214 (8%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTF 910
+ + N+S PG + L+G +GAGKTT ++ G EG+I +G P Q
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIK 71
Query: 911 ARISGYV-EQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
RI GY+ E+ ++ P++TVE+ L + A L K + K E +++ +E R
Sbjct: 72 NRI-GYLPEERGLY-PKMTVEDQLKYLAEL---KGMPKA---EIQKKLQAWLE----RLE 119
Query: 970 LVGFPGS--SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+VG LS ++++ ++ P ++ +DEP SGLD ++ + +
Sbjct: 120 IVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
G T++ + H+ + E D LL++K+G V+YG
Sbjct: 180 GATIIFSSHRME-HVEELCDRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 18/227 (7%)
Query: 846 GIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISG 902
++ + VS G + +VG SG+GK+ L + G + + G+I G
Sbjct: 12 PTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71
Query: 903 ---YPKEQSTFARISG----YVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEF 953
+ +I G + Q+ + S P +T+ + + K +SK + E
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL-RLHGKGLSKKEAKER 130
Query: 954 VEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
E++ LV + L +P LS R+R+ IA+ L NP ++ DEPT+ LD
Sbjct: 131 AIELLELVGIPDPERRLKSYPHE--LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTV 188
Query: 1014 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
A ++ ++ + G ++ H + + E D + +M GR++
Sbjct: 189 QAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIV 233
|
Length = 316 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 59/251 (23%), Positives = 116/251 (46%), Gaps = 44/251 (17%)
Query: 837 DMPQAMRSQGI----------PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLA 886
+ P A++ G+ E+ ++ + ++S G + +G++GAGK+T + +L
Sbjct: 12 NYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT 71
Query: 887 G--RKTGGYIEGDIKISGY-P-KEQSTFARISGYVEQNDIHSPQVTVEESLWFSAN---- 938
G T G + +++G P + + + R G V + + LW+
Sbjct: 72 GLLLPTSGKV----RVNGKDPFRRREEYLRSIGLV---------MGQKLQLWWDLPALDS 118
Query: 939 ---LRLSKEVSKNQRHEFVEEVMRLVELDS-LRDALVGFPGSSGLSTEQRKRLTIAVELV 994
L+L E+ ++ E ++ + +++L+ L+ + LS QR R +A L+
Sbjct: 119 LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPV------RKLSLGQRMRAELAAALL 172
Query: 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053
P ++F+DEPT GLD A A + ++ + TV+ T H DI D +LL+
Sbjct: 173 HPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLID 231
Query: 1054 RGGRVIYGGKL 1064
+ G++++ G L
Sbjct: 232 Q-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 11/159 (6%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFARI 913
L VS G L+G SG GKTTL+ ++AG +T G+I + G R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHKRP 73
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
V QN P +TV E++ F LRL K++ K + E V E + LV+L+ +
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFG--LRL-KKLPKAEIKERVAEALDLVQLEGYANRKP-- 128
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 ---SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 13/205 (6%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFA 911
Q L +V+ G L AL+G SG+GK+TL+ ++AG + G I+++G +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARD 71
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
R G+V Q+ +TV +++ F +R + R VEE++ LV+L+ L D
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDR-- 126
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-T 1030
+P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D T
Sbjct: 127 -YP--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT 183
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRG 1055
V H + E D +++M G
Sbjct: 184 TVFVTHDQE-EAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 24/203 (11%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ- 907
E +L +L V V G A+VG SG+GK+TL+ VLAG G++++ G P +
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKL 77
Query: 908 ------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
+ AR G+V Q+ P +T E N+ L E+ + L+
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALE------NVALPLELRGESSADSRAGAKALL 131
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIV 1017
E L L +P LS +++R+ +A P ++F DEPT LD + A ++
Sbjct: 132 EAVGLGKRLTHYPAQ--LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSI 1040
R + G T+V H P +
Sbjct: 190 FALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 3e-14
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 44/220 (20%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 911
L+ N S PG ALVG SG+GK+T+ ++AG + G +I G P+E+
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 912 RISG---YVEQNDIHSPQVTVEE--SLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
++ V+Q DI + TV + +LW + +++R + ++
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNLTLWDPT-------IPD-------ADLVRACKDAAI 594
Query: 967 RDALVGFPGS---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
D + PG + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 595 HDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 1018 MRTVRNTVDTGRTVVCTI--HQPSIDIFEAFDELLLMKRG 1055
+R R C I H+ S I + DE+++++RG
Sbjct: 655 DDNLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 34/223 (15%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR----KTGGYIEGDIKISGYPKEQST 909
+L+++S G +TAL+G +G GK+TL+ A R ++G GD IS Q
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ-- 73
Query: 910 FARISGYVEQNDIH-SPQ-VTVEE------SLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
AR + Q H +P+ +TV E S W S RLS E + V + M
Sbjct: 74 LARRLALLPQ--HHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQT 126
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
++ L D + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +
Sbjct: 127 RINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLM 181
Query: 1022 RNTVDTGRTVVCTIHQPSIDIFEA---FDELLLMKRGGRVIYG 1061
R G+TVV +H D+ +A D L+++ G + G
Sbjct: 182 RELNTQGKTVVTVLH----DLNQASRYCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 19/217 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 912
+ L +S G TAL+G +GAGK+TL+ L G G +K+ G
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKW 76
Query: 913 IS---GYVEQN-DIHSPQVTVEESLWFSA-NLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ G V Q+ D TV + + F N+ L K+ + + VEE ++ V + R
Sbjct: 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR----VEEALKAVRMWDFR 132
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
D LS Q+KR+ IA L +P +I +DEP + LD R +M + +
Sbjct: 133 DK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187
Query: 1028 GRTVVCTIHQPSIDI-FEAFDELLLMKRGGRVIYGGK 1063
G+TV+ H +D+ E D+++++K G + G K
Sbjct: 188 GKTVIVATH--DVDLAAEWADQVIVLKEGRVLAEGDK 222
|
Length = 274 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 4e-14
Identities = 61/222 (27%), Positives = 98/222 (44%), Gaps = 39/222 (17%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKEQ-- 907
LL +VS PG + A++G +GAGK+TL+ L+ G + G+++++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWS 70
Query: 908 -STFARISGYVEQNDIHSPQV---TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963
+ AR + Q HS TVEE + R +S+ + V + V+L
Sbjct: 71 PAELARRRAVLPQ---HSSLSFPFTVEEVVAMG---RAPHGLSRAEDDALVAAALAQVDL 124
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIV 1017
L +P SG EQ +R+ +A L P + +DEPTS LD V
Sbjct: 125 AHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHV 179
Query: 1018 MRTVRN-TVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRG 1055
+R R + G V+ +H D+ A D ++L+ +G
Sbjct: 180 LRLARQLAHERGLAVIVVLH----DLNLAARYADRIVLLHQG 217
|
Length = 258 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-14
Identities = 69/235 (29%), Positives = 104/235 (44%), Gaps = 49/235 (20%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
+VS PG + +VG SG+GKTTL++ L+ R G++ + +S
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDGQLRDLYALS 79
Query: 915 ------------GYVEQN--DIHSPQVTVEESLWFSANL--RLSKEVSKNQRH-----EF 953
G+V Q+ D QV+ N+ RL ++ RH
Sbjct: 80 EAERRRLLRTEWGFVHQHPRDGLRMQVSA------GGNIGERL---MAVGARHYGDIRAT 130
Query: 954 VEEVMRLVELDSLR--DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
+ + VE+D+ R D F S G+ ++RL IA LV +P ++FMDEPT GLD
Sbjct: 131 AGDWLERVEIDAARIDDLPTTF--SGGM----QQRLQIARNLVTHPRLVFMDEPTGGLDV 184
Query: 1012 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELLLMKRGGRVIYGG 1062
A ++ +R V + G VV H D+ A LL+MK+ GRV+ G
Sbjct: 185 SVQARLLDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQ-GRVVESG 234
|
Length = 258 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 5e-14
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 12/211 (5%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS-TFAR 912
+L ++S G L AL+G SG GKTTL+ +AG + G I I+ + R
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
+ QN P + VE+++ F + + +R V + ++LV L DA
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLG---DAAAH 133
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRT 1030
P LS ++R+ IA + P ++ +DEP S LDA A + + + T
Sbjct: 134 LPAQ--LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
++C H D D+ +MK G +G
Sbjct: 192 ILCVTHDQD-DALTLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 6e-14
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 23/204 (11%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGY--- 903
E K ++L V+ G + A++G +G+GK+TL + G Y EG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 904 ---PKEQSTFARISGYVE-QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
P E+ AR ++ Q + P VT + L + N R + + ++E
Sbjct: 72 ELSPDER---ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAE 128
Query: 960 LVELDSL---RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
L+ LD R GF G ++KR I L+ P + +DEP SGLD A I
Sbjct: 129 LLGLDEEFLERYVNEGFSGG------EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI 182
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPSI 1040
V + + GR V+ H +
Sbjct: 183 VAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR---KTGGYIEGD-IKISGY 903
P +L ++S G ALVG SG+GK+TL++++ R G I D + Y
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDVDSGRILIDGHDVRDY 69
Query: 904 PKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQR----HEFVEEVMR 959
++ R G V Q D+ TV E++ + +EV + R HEF+ E
Sbjct: 70 --TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIME--- 123
Query: 960 LVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
L D ++G G LS QR+R+ IA L+ +P I+ +DE TS LD + +V
Sbjct: 124 ---LPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058
+ + RT H+ S I A D +++++ G V
Sbjct: 180 ALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGKIV 215
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 22/221 (9%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------ 903
K+ L +VS G + ++G SGAGK+TL+ + G + G + + G
Sbjct: 16 GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLS 73
Query: 904 PKEQSTFARISGYVEQ--NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
KE R G + Q N + S TV E++ L ++ V K + E V E++ LV
Sbjct: 74 GKELRKARRRIGMIFQHFNLLSSR--TVFENVALP--LEIAG-VPKAEIEERVLELLELV 128
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
L+ DA +P LS Q++R+ IA L NP ++ DE TS LD ++ +
Sbjct: 129 GLEDKADA---YPAQ--LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183
Query: 1022 RNT-VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
R+ + G T+V H+ + + D + +M++G V G
Sbjct: 184 RDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEEG 223
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-14
Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 22/196 (11%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKE 906
KK +++++VS + G + L+G +GAGKTT ++ G R G I D I+ P
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH 74
Query: 907 QSTFARIS-GYVEQNDIHSPQVTVEESLWFSANLRL-----SKEVSKNQRHEFVEEVMRL 960
+ AR+ GY+ Q ++TVE+ N+ K++ K +R E ++ ++
Sbjct: 75 KR--ARLGIGYLPQEASIFRKLTVED------NIMAVLEIREKDLKKAERKEELDALLEE 126
Query: 961 VELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
+ LRD+ S LS +R+R+ IA L ANP I +DEP +G+D A + R
Sbjct: 127 FHITHLRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRI 181
Query: 1021 VRNTVDTGRTVVCTIH 1036
+++ D G V+ T H
Sbjct: 182 IKHLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 9e-14
Identities = 60/203 (29%), Positives = 85/203 (41%), Gaps = 42/203 (20%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKT--GGYIEGDIKISGY 903
+L +S PG ALVGSSG GK+T++ D +G G I D+ +
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR-DLNLRWL 75
Query: 904 PKEQSTFARISGYVEQNDIHSPQV---TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRL 960
G V Q P + T+ E N+R K + E VEE +
Sbjct: 76 -------RSQIGLVSQE----PVLFDGTIAE------NIRYGKP---DATDEEVEEAAKK 115
Query: 961 VELDSL-------RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
+ D LVG GS LS Q++R+ IA L+ NP I+ +DE TS LDA +
Sbjct: 116 ANIHDFIMSLPDGYDTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIH 1036
+V + + GRT + H
Sbjct: 175 EKLVQEAL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 56/254 (22%), Positives = 93/254 (36%), Gaps = 55/254 (21%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE---FHV 226
+ DVS + G +T LLG +GK+TLL +A L SG +T +G F
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVR 74
Query: 227 QRTSAYISQTDNHIP-ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
++ + + + LT RE + AR +N L+R E +
Sbjct: 75 RKIG--VLFGERGLYARLTARENLKYFAR-----------LNGLSRKEIKA--------- 112
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
+ K L L + VG S G K++V +V
Sbjct: 113 ---------------RIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDP 152
Query: 346 KTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPP--PETFDLFDDLLLLSE 403
L +DE ++GLD T + +F+ Q+ + E L D +++L +
Sbjct: 153 SILVLDEPTSGLDIRTR----RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHK 208
Query: 404 GHLVYQGPRAEVLE 417
G +V +G +
Sbjct: 209 GEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 33/226 (14%)
Query: 856 SNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR-----KTGGYIE---GDIKISGYPK-E 906
+VS PG + +VG SG+GK+TL+ LAGR T YI ++++ + E
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 907 QSTFARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKE-VSKNQRH-----EFVEEVMR 959
+ R G+V QN ++ V SA + + ++ RH ++ +
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRV------SAGANIGERLMAIGARHYGNIRATAQDWLE 133
Query: 960 LVELDSLR--DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
VE+D R D F G ++RL IA LV P ++FMDEPT GLD A +
Sbjct: 134 EVEIDPTRIDDLPRAFSGG------MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187
Query: 1018 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
+ +R V D G V+ H + A LL+M++ GRV+ G
Sbjct: 188 LDLLRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 61/216 (28%), Positives = 91/216 (42%), Gaps = 14/216 (6%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 911
L +VS G L G SGAGK+TL+ ++ G R T G I +S + F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 912 RIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
R G V Q+ P TV E N+ L V E V +++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYE------NVALPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
P S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGV 1066
V+ H +++ +L GR++ GV
Sbjct: 190 VLMATH--DLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 2e-13
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 29/217 (13%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKE-QSTFA 911
+VS G + AL+G +GAGK+TLM +L G + G+I++ G +S
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKEVRIKSPRD 75
Query: 912 RIS---GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQR------HEFVEEVMRLVE 962
I G V Q+ + P +TV E N+ L E SK ++E+
Sbjct: 76 AIRLGIGMVHQHFMLVPTLTVAE------NIILGLEPSKGGLIDRRQARARIKELSERYG 129
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
L DA V LS +++R+ I L ++ +DEPT+ L + A + +R
Sbjct: 130 LPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR 184
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
G+T++ H+ ++ D + ++ R G+V+
Sbjct: 185 RLAAEGKTIIFITHKLK-EVMAIADRVTVL-RRGKVV 219
|
Length = 501 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 2e-13
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQ 907
L ++ G ALVG SGAGKT+L++ L G ++ +G +KI+G +
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKE----------VSKNQRHEFVEEV 957
++ + +V QN P T+ + N+ L + EF+
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRD------NVLLGNPDASDEQLQQALENAWVSEFLPL- 470
Query: 958 MRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
L D +G ++GLS Q +RL +A L+ ++ +DEPT+ LDA + +V
Sbjct: 471 -----LPQGLDTPIG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLV 524
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
M+ + N +T + HQ ++ +D++ +M+ G
Sbjct: 525 MQAL-NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQSTF 910
L+++S PG L L+G +GAGKTTLMDV+ G R G +GD ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 911 ARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEF-------VEEVMRLVE 962
AR G Q +TV E+L + L K V + ++E++ +
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELA--LNRDKSVFASLFARLRAEERRRIDELLATIG 136
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
L RD L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 26/211 (12%)
Query: 862 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR--ISGYVEQ 919
G + A++G SGAGK+TL++++AG +T G+I I+G S A +S ++
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQE 79
Query: 920 NDIHSPQVTVEES--LWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977
N++ + +TV ++ L S L+L+ E QR E VE V L L PG
Sbjct: 80 NNLFA-HLTVAQNIGLGLSPGLKLNAE----QR-EKVEAAAAQVGLAGFLKRL---PGE- 129
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVVC 1033
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 -LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLLM 185
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064
H P D D ++ + GR+ G
Sbjct: 186 VTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 2e-13
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 22/216 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-EQSTFAR 912
+++++S + G L+G +GAGK+T+ +L G + G I + G P ++ AR
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLAR 76
Query: 913 IS-GYVEQNDIHSPQVTVEESLW-FSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
++ G V Q D P+ TV E+L F +S + + ++ L+S D
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR----EIEAVIPSLLEFARLESKADVR 132
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V + LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T
Sbjct: 133 V-----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 187
Query: 1031 VVCTIHQPSIDIFEAFDEL---LLMKRGGRVIYGGK 1063
++ T H E + L L + GR I G+
Sbjct: 188 ILLTTH-----FMEEAERLCDRLCVLESGRKIAEGR 218
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 4e-13
Identities = 61/271 (22%), Positives = 107/271 (39%), Gaps = 61/271 (22%)
Query: 159 IFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG 218
F K S+ + D+S + G + LG +GKST L L G L L SG + NG
Sbjct: 29 FFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNG 85
Query: 219 Y---KLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275
+ E +++ + Q +L ++ ++ +L E
Sbjct: 86 KDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSL------------------EVLKLIYE 127
Query: 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
+ + + D++ ++L L+ +R +S GQ+ R
Sbjct: 128 -----------------IPDDEFAERLDFLTEILDLE-----GFLKWPVRKLSLGQRMRA 165
Query: 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLF 395
++ P K LF+DE + GLD + I + L+ + + AT+L+ T F
Sbjct: 166 ELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT-------THI-F 217
Query: 396 DDL-------LLLSEGHLVYQGPRAEVLEFF 419
DD+ LL+ +G LV+ G A++ E F
Sbjct: 218 DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 6e-13
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 849 EKKLQ--LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906
E +Q +L NVS G + A+VGSSG+GK+TL+ +L G T GD+ +G P
Sbjct: 17 EGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMS 74
Query: 907 Q-STFARIS------GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
+ S+ A+ G++ Q P T E++ A L + + + E++
Sbjct: 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENV---AMPLLIGKKKPAEINSRALEMLA 131
Query: 960 LVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
V L+ S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 132 AVGLEHR-----ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 6e-13
Identities = 72/259 (27%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 811 ESGKKKGMILPFQPLAMTFHNVN--YYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLT 868
E LP A+TF N+ Y D P+ +LSN++ PG
Sbjct: 440 EPRSAGLAALPELRGAITFENIRFRYAPDSPE-------------VLSNLNLDIKPGEFI 486
Query: 869 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQNDIHSP 925
+VG SG+GK+TL +L T + G + + G + R G V Q
Sbjct: 487 GIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIADPAWLRRQMGVVLQ------ 538
Query: 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFP-------GSSG 978
E++ FS ++R + + E V+ +L D + P G G
Sbjct: 539 -----ENVLFSRSIRDNIALCNPGAPF--EHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591
Query: 979 --LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
LS QR+R+ IA LV NP I+ DE TS LD + A++MR +R + GRTV+ H
Sbjct: 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICRGRTVIIIAH 650
Query: 1037 QPSIDIFEAFDELLLMKRG 1055
+ + A D ++++++G
Sbjct: 651 R--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 7e-13
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 25/222 (11%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 907
K+Q L VS G + AL+G +GAGKTTL+ + G R G I I+G P +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRH--EFVEEVMRLV-ELD 964
I YV + P++TVEE NL L +++ +EEV L L
Sbjct: 75 RARLGI-AYVPEGRRIFPRLTVEE------NLLLGAYARRDKEAQERDLEEVYELFPRLK 127
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
R+ G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 128 ERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKEL 182
Query: 1025 VDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYGGK 1063
G + + Q + A D +++ GR++ G
Sbjct: 183 RKEGGMTILLVEQ---NARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 9e-13
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 324 IRGVSGGQKKRVTTG-EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
+RG+S Q+KR+T G E+ P LF+DE ++GLDS + IV+ L+ IL
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKP-SILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQAILC 163
Query: 383 ALLQPPPETFDLFDDLLLLSE-GHLVYQG 410
+ QP F+ FD LLLL G VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 9e-13
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 13/172 (7%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYP 904
Q + NV+ G + AL+G SG GKTT + D+ G + G I D + I G
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 905 KEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL- 963
+ R G V Q P ++V +++ A L+L+ ++ E E +R L
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNV--VAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
D ++D L ++GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 136 DEVKDRLK--TPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 68/268 (25%)
Query: 153 ILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSG 212
L L K+ L+ VS + PG M LLGP +GK+TL+ LA S SG
Sbjct: 2 QLENLTKRYGKKR---ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SG 54
Query: 213 NITYNGYKL--DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLN 270
I +G + ++R Y+ Q P TVRE D+ A +G I
Sbjct: 55 TIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG--------IPS-- 104
Query: 271 RLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330
+ K R D VL+++ L I +SGG
Sbjct: 105 KEVKAR-------------------------VDEVLELVNL-----GDRAKKKIGSLSGG 134
Query: 331 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQM--DATILMALLQPP 388
++RV + +VG L +DE + GLD + ++ RN + ++ D ++++
Sbjct: 135 MRRRVGIAQALVGDPSILIVDEPTAGLDPE---ERIR-FRNLLSELGEDRIVILS----- 185
Query: 389 PETFDLFD------DLLLLSEGHLVYQG 410
T + D + +L++G LV++G
Sbjct: 186 --THIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 66/220 (30%), Positives = 95/220 (43%), Gaps = 31/220 (14%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 905
P+ L +VS G A+VG +G+GK+TL +L G G I + G
Sbjct: 16 PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVL 71
Query: 906 EQSTFARIS---GYVEQN-DIHSPQVTVEESLWFSANLRLSKEVSKNQ---RHEFVEEVM 958
+ T + G V QN D TV++ + F +N R E VE V
Sbjct: 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL---------ENIGVPREEMVERVD 122
Query: 959 RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
+ + + D L P LS Q++R+ IA L P II +DE TS LD R V+
Sbjct: 123 QALRQVGMEDFLNREPHR--LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180
Query: 1019 RTVRNTVDTGR-TVVCTIHQPSIDIFEAF--DELLLMKRG 1055
TVR + TV+ H D+ EA D +++M +G
Sbjct: 181 ETVRQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 22/189 (11%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS--T 909
L S +S + G + G +G+GKTTL+ +LAG G + ++G P + +
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRVLLNGGPLDFQRDS 70
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
AR Y+ ++V E+L F E VEE + V L+ D
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDR 121
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029
V LS Q++R+ +A L++ + +DEPT+ LD A + G
Sbjct: 122 PVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG 176
Query: 1030 TVVCTIHQP 1038
VV T HQ
Sbjct: 177 MVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISG---YP 904
+ +V+ P +TA +G SG GK+T++ L G +EG++ + G Y
Sbjct: 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75
Query: 905 K--EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE 962
+ R G V Q P +++ +++ A L+L+ +K E VE+ +R
Sbjct: 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGAN 133
Query: 963 L-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L + ++D L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 134 LWNEVKDRL-DKPGG-GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-12
Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 21/249 (8%)
Query: 820 LPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKT 879
P + AM ++ + + P K L +S G A++G SG+GK+
Sbjct: 301 YPSRDPAMPLPEPEGHLSVENV--TIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKS 358
Query: 880 TLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTVEESLW-F 935
TL ++ G G +++ G +Q TF + GY+ Q D+ TV E++ F
Sbjct: 359 TLARLIVGIWP--PTSGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIARF 415
Query: 936 SANLRLSK--EVSK-NQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVE 992
N K E +K HE + + L D ++G PG + LS QR+R+ +A
Sbjct: 416 GENADPEKIIEAAKLAGVHELI------LRLPDGYDTVIG-PGGATLSGGQRQRIALARA 468
Query: 993 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1052
L +P ++ +DEP S LD + ++ G TVV H+PS + D++L++
Sbjct: 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVL 526
Query: 1053 KRGGRVIYG 1061
+ G +G
Sbjct: 527 QDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 30/227 (13%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 905
P + L NVS + G A++G +G+GK+T+ +L G + G+IKI G
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEIKIDGITI 73
Query: 906 EQSTFARIS---GYVEQN-DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
+ I G + QN D TVE+ + F +K+V + + ++++ + V
Sbjct: 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLE---NKKVPPKKMKDIIDDLAKKV 130
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---M 1018
++ D LS Q++R+ IA L NP II DE TS LD + + M
Sbjct: 131 GMEDYLDK-----EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELLLMKRGGRVIYGGK 1063
+R T +T++ H D+ EA D++++ G++I GK
Sbjct: 186 VDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQGK 225
|
Length = 271 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-12
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 879 TTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS----GYVEQNDIHSPQVTVEESLW 934
+TL+ ++ G G I + G + ++ G V Q+ P++TV E+L+
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 935 FSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELV 994
F + + EE + V L D LS Q++R+ IA L+
Sbjct: 59 FGLRDKEADA--------RAEEALERVGLPDFLDREPV----GTLSGGQKQRVAIARALL 106
Query: 995 ANPSIIFMDEPTS 1007
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-12
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 56/261 (21%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL------ 221
L DVS + PG L+GP +GKSTLL L G ++ + SG++ +G +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 222 DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
++R I Q N I L+V E G + L
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLEN---------VLSGRLGRRSTWRSL-----FGLF 117
Query: 282 PEID---AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG 338
P+ + A L+ +GL + +SGGQ++RV
Sbjct: 118 PKEEKQRAL----------------AALERVGLLDKAYQRADQ-----LSGGQQQRVAIA 156
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL---- 394
++ K + DE LD +++ Q++ L+ + T++++L Q DL
Sbjct: 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-----DLAREY 211
Query: 395 FDDLLLLSEGHLVYQGPRAEV 415
D ++ L +G +V+ GP AE+
Sbjct: 212 ADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 17/211 (8%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 907
+L + G + ++G SG+GK+TL+ + G I +K++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSL 966
+ + G V Q P +TV E N+ L+ +V + E E + L+E L
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLE------NITLAPIKVKGMSKAEAEERALELLEKVGL 125
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
D +P LS Q++R+ IA L NP ++ DEPTS LD V+ +++ +
Sbjct: 126 ADKADAYPAQ--LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183
Query: 1027 TGRTVVCTIHQPSIDIF--EAFDELLLMKRG 1055
G T+V H+ F E D ++ M G
Sbjct: 184 EGMTMVVVTHEMG---FAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY-IEGDIKISG-----YPKEQ 907
LL+NV+ + G + L+G SG GK+TL+ + G G + G++ ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
R G + Q+ + P ++V ++L F+ L + N R + LD
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 19/215 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKEQST 909
+L VS G +T ++G +G GKTTL+ L G K+G I+ P +
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE-LDSLRD 968
A I YV Q P++TVEE NL + + +E+ L L +
Sbjct: 74 RAGI-AYVPQGREIFPRLTVEE------NLLTGLAALPRRSRKIPDEIYELFPVLKEMLG 126
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
G LS Q+++L IA LV P ++ +DEPT G+ + R +R G
Sbjct: 127 RRGG-----DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG 181
Query: 1029 RTVVCTIHQPSIDI-FEAFDELLLMKRGGRVIYGG 1062
+ + Q +D E D +M+R GRV+ G
Sbjct: 182 GMAILLVEQ-YLDFARELADRYYVMER-GRVVASG 214
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 15/207 (7%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKEQSTFARISGYVE 918
G + A++G SG+GK+TL+ ++ G R G I DI + R+ G +
Sbjct: 33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM-GVLF 91
Query: 919 QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSG 978
Q +TV E++ F LR ++ ++ E V + LV L A +P S
Sbjct: 92 QQGALFSSLTVFENVAFP--LREHTKLPESLIRELVLMKLELVGLRG--AAADLYP--SE 145
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1037
LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R D G TV+ H
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
Query: 1038 PSIDIFEAFDELLLMKRGGRVIYGGKL 1064
+ D + ++ G+VI G
Sbjct: 206 LDS-LLTIADRVAVLAD-GKVIAEGTP 230
|
Length = 263 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 24/168 (14%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 911
L+++S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 912 RISGYVEQNDIHSPQVTVEE----------SLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
I G Q +TV E S++ S RLS E K++ +EEV+ +
Sbjct: 78 GI-GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEE-KDR----IEEVLETI 131
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
L D L G LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 132 GLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 9/189 (4%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 908
++L +S G + ++G SG+GK+TL+ L G G I D + G K+
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
R G V Q P +TV E++ + K++SK + E E++ V L D
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLA--PVKVKKLSKAEAREKALELLEKVGLADKAD 131
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
A +P LS Q++R+ IA L +P ++ DEPTS LD V+ +++ + G
Sbjct: 132 A---YPAQ--LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186
Query: 1029 RTVVCTIHQ 1037
T++ H+
Sbjct: 187 MTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 68/275 (24%), Positives = 107/275 (38%), Gaps = 53/275 (19%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
S L+DV+ V G + LLGP SGKSTLL +AG L+ SG I NG H
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVH 68
Query: 226 VQ-RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+ R ++ Q LTVR+ F LE + P +I
Sbjct: 69 ARDRKIGFVFQHYALFKHLTVRDNIAFG-------------------LEIRK--HPKAKI 107
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
A + +L+++ L +G+ +SGGQ++RV +
Sbjct: 108 KA--------------RVEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVE 148
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
+ L +DE LD+ ++ LR ++ T + + E ++ D ++++S G
Sbjct: 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNG 207
Query: 405 HLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEV 439
+ G EV + P V FL EV
Sbjct: 208 KIEQIGSPDEV--------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 61/215 (28%), Positives = 107/215 (49%), Gaps = 18/215 (8%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L ++ G +TA++G +GAGK+TL L G + + G I D K Y ++ R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 913 IS-GYVEQNDIHSP-QVTVEESLWFSA-NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
S G V Q+ + +V + + F A NL+L ++ + + V+ ++ ++ L+D
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED----EVRKRVDNALKRTGIEHLKDK 137
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1028
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 -----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 1029 RTVVCTIHQPSIDIFEAF-DELLLMKRGGRVIYGG 1062
T++ H IDI + D + +MK G ++ G
Sbjct: 193 LTIIIATH--DIDIVPLYCDNVFVMKEGRVILQGN 225
|
Length = 283 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 29/241 (12%)
Query: 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDV 884
+ + F NV+Y +G P + Q + +V+ F G A+VG +G+GK+TL+
Sbjct: 1 MTIRFDNVSY-------TYQKGTPYEH-QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQN 52
Query: 885 LAG--RKTGGYIE-GDIKISGYPKEQ--STFARISGYVEQNDIHSPQV---TVEESLWFS 936
+ + T G + DI I+ K++ + G V Q Q+ TVE + F
Sbjct: 53 INALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ--FPESQLFEDTVEREIIFG 110
Query: 937 -ANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVA 995
N +++ + KN H L++L RD + P +S Q +++ I L
Sbjct: 111 PKNFKMNLDEVKNYAHRL------LMDLGFSRDVMSQSPFQ--MSGGQMRKIAIVSILAM 162
Query: 996 NPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054
NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+++MK
Sbjct: 163 NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221
Query: 1055 G 1055
G
Sbjct: 222 G 222
|
Length = 286 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 17/164 (10%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYI-EGDIKISGYPKEQST 909
L ++S G L+G SG GKTTL+ ++AG R+T G I +G I+ P ++
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFS-ANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
+ G V Q+ P +TV +++ + N + + + E V E++ LV L
Sbjct: 78 Y----GIVFQSYALFPNLTVADNIAYGLKNRGMGRA----EVAERVAELLDLVGLPGSER 129
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+PG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 130 K---YPGQ--LSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 5e-12
Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 25/228 (10%)
Query: 846 GIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR--KTGGYIE-GDIKISG 902
G P +K + L+ +S + G ++GS+GAGK+TL++ +AG T G I + ++
Sbjct: 14 GTPLEK-RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTK 72
Query: 903 YPKEQSTFARISGYVEQN--DIHSPQVTVEE--SLWFSANLR--LSKEVSKNQRHEFVEE 956
+ A + V Q+ +P++T+EE +L S + LS +++ +R F E
Sbjct: 73 KSVAKR--ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER 130
Query: 957 VMRLVE-LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+ RL L++ +G LS QR+ L++ + + P I+ +DE T+ LD + A
Sbjct: 131 LARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAE 185
Query: 1016 IVMR-TVRNTVDTGRTVVCTIH--QPSIDIFEAFDELLLMKRGGRVIY 1060
VM T + + T + H + ++D + L+M G+++
Sbjct: 186 FVMELTAKIVEEHKLTTLMVTHNMEDALD----YGNRLIMLHSGKIVL 229
|
Length = 263 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-12
Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 26/221 (11%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGD-IKISGYP 904
P +K +L +S G ++G SG+GK+TL +L G T G + D + +
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD 404
Query: 905 KEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD 964
+EQ R GY+ Q D+ T+ E++ R +E E V E RL +
Sbjct: 405 REQ--LGRHIGYLPQ-DVELFDGTIAENI-----ARFGEEADP----EKVIEAARLAGVH 452
Query: 965 SL-------RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
L D +G G + LS QR+R+ +A L +P ++ +DEP S LD+ A +
Sbjct: 453 ELILRLPQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAAL 511
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058
+ G TVV H+PS + D++L+++ GR+
Sbjct: 512 AAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQ-DGRI 549
|
Length = 580 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-12
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 870 LVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQ 926
L+G SG GKTTL+ +LAG + G + ++ P R V Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 927 VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKR 986
+TVEE++ F L++ K V + + V E +RLV+L+ D LS Q++R
Sbjct: 57 MTVEENVAFG--LKMRK-VPRAEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQR 108
Query: 987 LTIAVELVANPSIIFMDEPTSGLDAR 1012
+ +A LV P I+ +DEP S LD +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 7e-12
Identities = 73/259 (28%), Positives = 108/259 (41%), Gaps = 34/259 (13%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L V G L LVG +GAGKTTL+ + G T G + ++G E +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKN-QRHEF----------VEEVMRLVE 962
S V PQ + SL F ++R E+ + R F VE M
Sbjct: 76 SRRVAS----VPQ---DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTG 128
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
+ D V + LS +R+R+ +A L ++ +DEPT+ LD + VR
Sbjct: 129 VAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGRVIYGGKLGV-HSKTMIDYFQALDG 1080
VD G+T V IH +D+ + DEL+L+ G G V + T+ F D
Sbjct: 184 RLVDDGKTAVAAIH--DLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAF---DA 238
Query: 1081 IPSIPSGYNPATWMLEVTT 1099
++ G +PAT VT
Sbjct: 239 RTAV--GTDPATGAPTVTP 255
|
Length = 402 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 8e-12
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 32/234 (13%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG-YPKEQ 907
E +L L+N+S F + ++G+SG+GK+TL+ G Y G I++ Y ++
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 908 STFARISGYVEQNDIHS--------------PQV-----TVEESLWFS-ANLRLSKEVSK 947
+ I + P+ T+E+ + F L + K +K
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 948 NQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007
+ +F M L + R GLS Q++R+ IA L P I+ DEPT+
Sbjct: 154 -KLAKFYLNKMGLDDSYLERSPF-------GLSGGQKRRVAIAGILAIQPEILIFDEPTA 205
Query: 1008 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
GLD + +M+ + + +TV H + E DE+++M +G + G
Sbjct: 206 GLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 54/247 (21%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDS----SLKKSGNITYNGYKLDEF 224
+L D++ + PG + +L GP SGK+TLL L G L S SLK G Y + +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 225 HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
++R YI Q N + LT R+ N++ + E+
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQ-----------------------------NVQMALEL 109
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI----RGVSGGQKKRVTTGEM 340
+ + ++ L+ +GL D + +SGGQK+RV
Sbjct: 110 QPNLSYQEARERARAM-----LEAVGL---------GDHLDYYPHNLSGGQKQRVAIARA 155
Query: 341 IVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400
+V K + DE + LDS + +V+ ++ + TIL+ + D+ D ++
Sbjct: 156 LVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI--VTHDNRILDVADRIVH 213
Query: 401 LSEGHLV 407
+ +G L+
Sbjct: 214 MEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-11
Identities = 63/260 (24%), Positives = 105/260 (40%), Gaps = 56/260 (21%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG---YKLD 222
L + + + G +LG SGKSTLL LAG D G+IT NG LD
Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLD 406
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
E ++ T + ++Q H+ T+R+ A + L ++ E+ + +P
Sbjct: 407 EQALRETISVLTQ-RVHLFSGTLRDNLRLAN----PDASDEELWAALQQVGLEKLLESAP 461
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
+ GL+ T +G + R +SGG+++R+ ++
Sbjct: 462 D--------------------------GLN----TWLG-EGGRRLSGGERRRLALARALL 490
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL-----FDD 397
+DE + GLD T Q++ L F H T+LM T L D
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLALL--FEHAEGKTLLMV-------THRLRGLERMDR 541
Query: 398 LLLLSEGHLVYQGPRAEVLE 417
+++L G ++ +G AE+L
Sbjct: 542 IIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 843 RSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG 902
+S G E +L +L+ V V G AL+G SG+GK+TL+ +LAG G G++ + G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 903 YP-----KEQSTFARIS--GYVEQNDIHSPQVTVEESLWFSANLR-LSKEVSKNQRHEFV 954
P +E R G+V Q+ + P + E++ A LR S S+N +
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALL 131
Query: 955 EEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
E++ L L P LS +++R+ +A P ++F DEPT LD
Sbjct: 132 EQL-------GLGKRLDHLPAQ--LSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 1e-11
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTF 910
+L ++ FS +T LVG++G GK+TL L+G R G + K Y K
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 911 AR--ISGYVEQNDIHSPQVTVEESLWFS-ANLRLSK-EVSKNQRHEFVEEVMRLVELDSL 966
R ++ + + ++ + FS NL + + E+++ V+E + LV+
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLVDAQHF 129
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
R + LS Q+KR+ IA LV + +DEPT+GLD ++ +R V
Sbjct: 130 RHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
Query: 1027 TGRTVVCTIHQPSID-IFEAFDELLLMKRGGRVIYG 1061
G V+ + H ID I+E D + ++++G + +G
Sbjct: 185 QGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-11
Identities = 71/261 (27%), Positives = 112/261 (42%), Gaps = 61/261 (23%)
Query: 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVL 885
A+ F +V++ D QG+ +VS PG A+VG +GAGK+TL+++L
Sbjct: 334 AVEFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381
Query: 886 AGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWF----SANLRL 941
++ G I I G I + + V +++ F N+R+
Sbjct: 382 --QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431
Query: 942 SKEVSKN----------QRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAV 991
+ + + Q H+F+E + D D +VG G LS +R+RL IA
Sbjct: 432 GRPDATDEEMRAAAERAQAHDFIER-----KPDGY-DTVVGERGRQ-LSGGERQRLAIAR 484
Query: 992 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS-------IDIFE 1044
L+ +P I+ +DE TS LD A V + + + GRT H+ S I +F+
Sbjct: 485 ALLKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFD 543
Query: 1045 A--------FDELLLMKRGGR 1057
FDEL+ RGGR
Sbjct: 544 NGRVVESGSFDELV--ARGGR 562
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 44/220 (20%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEG-DIKISGYPKE 906
L+ +S G A+VG SGAGK+T++ DV +G T I+G DI+ +
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDIRD---VTQ 332
Query: 907 QSTFARISGYVEQ-----NDI------HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVE 955
QS I G V Q ND + E + +A Q H+F++
Sbjct: 333 QSLRRAI-GIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAE--------AAQIHDFIQ 383
Query: 956 EVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
L E G LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 384 S---LPEGYDTGVGERGLK----LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ 436
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ +R V GRT + H+ S I +A DE++++ G
Sbjct: 437 AIQAALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 54/262 (20%)
Query: 153 ILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSG 212
L GL S+ L+D+S V+PG LLGP GK+TLL +AG SG
Sbjct: 2 ELKGLSKT---YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SG 55
Query: 213 NITYNGYKLDEFHV---QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDL 269
I +G D V +R + Q P LTV E F + +G
Sbjct: 56 EILIDGR--DVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG------------ 101
Query: 270 NRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSG 329
P EI A ++ +L+++GL+ + N +SG
Sbjct: 102 ---------VPKAEIRARVRE--------------LLELVGLEG-----LLNRYPHELSG 133
Query: 330 GQKKRVTTGE-MIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPP 388
GQ++RV + P L +DE + LD+ ++ + L+ ++ T +
Sbjct: 134 GQQQRVALARALAREPS-LLLLDEPLSALDAKLREELREELKELQRELGITTIYV-THDQ 191
Query: 389 PETFDLFDDLLLLSEGHLVYQG 410
E L D + +++EG +V G
Sbjct: 192 EEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 72/290 (24%), Positives = 116/290 (40%), Gaps = 69/290 (23%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE-----F 224
L ++ +K G +T +LG +GKSTL L G L S SG I ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLM 78
Query: 225 HVQRTSAYISQT-DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
++ + + Q DN + +V + F A +L E E R
Sbjct: 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAV-------------NLKLPEDEVRKR---- 121
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVG 343
+D +K + + K + +S GQKKRV ++V
Sbjct: 122 VDNALKRTGIEHLKDKPT-----------------------HCLSFGQKKRVAIAGVLVM 158
Query: 344 PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL------FDD 397
K L +DE + GLD +I+K L ++ TI++A T D+ D+
Sbjct: 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDIDIVPLYCDN 211
Query: 398 LLLLSEGHLVYQGPRAEVL---EFFESLGFQLPPRKGVADFLQEVTSKKD 444
+ ++ EG ++ QG EV E + +L PR G L E+ +KD
Sbjct: 212 VFVMKEGRVILQGNPKEVFAEKEMLRKVNLRL-PRIG---HLMEILKEKD 257
|
Length = 283 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 24/208 (11%)
Query: 862 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR--ISGYVEQ 919
F+ G +TA+VG SG+GK+TL++++AG +T G + I+G + A +S ++
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 920 NDIHSPQVTVEES--LWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977
N++ +TVE++ L S L+L+ E R + +E + V L L L PG
Sbjct: 79 NNLF-AHLTVEQNVGLGLSPGLKLTAE----DR-QAIEVALARVGLAGLEKRL---PGE- 128
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGRTVVCT 1034
LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T TV+
Sbjct: 129 -LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKMTVLMV 185
Query: 1035 IHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
HQP D ++ + GR+ G
Sbjct: 186 THQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 56/275 (20%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG---YKLDEFHV 226
L+D+S +K G + LLGP +GKSTLL +AG L++ +G I NG + + V
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAG-LETP--DAGRIRLNGRVLFDVSNLAV 74
Query: 227 Q-RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
+ R ++ Q P +TV + F L+ + EI
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFG-------------------LKVRKERPSEAEIR 115
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE-MIVGP 344
A + + L L + + +SGGQ++RV + V P
Sbjct: 116 A--RVEEL-----------------LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEP 156
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
K L +DE LD+ ++ + LR ++ T + + E +L D +++L++G
Sbjct: 157 -KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVF-VTHDQEEALELADRVVVLNQG 214
Query: 405 HLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEV 439
+ GP EV + P + VA FL EV
Sbjct: 215 RIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 16/180 (8%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------ 904
+ +L+NVS G L+G SG GK+TL +L G + +G + G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDR 80
Query: 905 KEQSTFARISGYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE 962
K++ F R V Q+ + P++TV + + LR + ++++ + E++ +V
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVG 138
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
L S + P LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 139 LRS--EDADKLPRQ--LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVL--------AGRKTGGYIEGDIKISGYPKE 906
+ +VS F +TA++G SG GK+T++ + + R TG + D I +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DS 965
+ R G V Q P +++ +++ A +L+ V++++ E VE ++ V L D
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNV--IAGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
++D L + LS Q++RL IA + P +I MDEP S LD
Sbjct: 138 VKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 57/191 (29%), Positives = 82/191 (42%), Gaps = 26/191 (13%)
Query: 863 SPGVLTALVGSSGAGKTTLMDV--LAGRKTGGYIE-GDIKISG---YPKEQSTFARIS-- 914
PG + A++G SG+GKTTL+ L + G I GDI I +++ ++
Sbjct: 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86
Query: 915 -GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
G+V QN P TV E++ + V + E L+ A VG
Sbjct: 87 VGFVFQNFNLFPHRTVLENI-----IEGPVIVKGEPKEEATARARELL-------AKVGL 134
Query: 974 PGSSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
G LS Q++R+ IA L P +I DEPTS LD V+ T+R
Sbjct: 135 AGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK 194
Query: 1029 RTVVCTIHQPS 1039
RT+V H+ S
Sbjct: 195 RTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 48/238 (20%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYP-KEQSTF 910
Q L V G + AL+G SG+GK+TL+ L+G TG I++ G + +
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77
Query: 911 AR-------ISGYVEQNDIHSPQVTVEESL----------------WFSANLRLSKEVSK 947
AR +GY+ Q +++V E++ WF+ +
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFT----------R 127
Query: 948 NQRHEFVEEVMRLVELDSLRDALVGFPGS--SGLSTEQRKRLTIAVELVANPSIIFMDEP 1005
Q+ ++ + R+ +V F S LS Q++R+ IA L+ +I DEP
Sbjct: 128 EQKQRALQALTRV--------GMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEP 179
Query: 1006 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
+ LD +A IVM T+R+ G TVV T+HQ +D + E ++ R G V Y G
Sbjct: 180 IASLDPESARIVMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPKEQSTFA 911
L VS G + +G +GAGK+T M ++ G Y+ G +++ G Q+
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 912 --RISGYVEQNDIHSP---QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
R GY+ + H+P + V E L F A + K QR VEE++ LV L
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPE 126
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 65/272 (23%), Positives = 107/272 (39%), Gaps = 53/272 (19%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
S +L DV+ ++ G +LLGP GKSTLL +AG + + SG I +G + +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLP 71
Query: 226 VQ-RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+ R A + Q P +TV E F + +G P EI
Sbjct: 72 PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---------------------VPKAEI 110
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
D +K V K+LGL+ + N +SGGQ++RV +V
Sbjct: 111 DKRVKE--------------VAKLLGLEH-----LLNRKPLQLSGGQRQRVALARALVRK 151
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
K +DE + LD+ + ++ ++ T + E L D ++++++G
Sbjct: 152 PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYV-THDQVEAMTLADRIVVMNDG 210
Query: 405 HLVYQGPRAEVLEFFESLGFQLPPRKGVADFL 436
+ G E+ E P VA F+
Sbjct: 211 RIQQVGTPLELYER--------PANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-11
Identities = 72/289 (24%), Positives = 118/289 (40%), Gaps = 55/289 (19%)
Query: 134 TGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGK 193
GS + N L L P L+D++ +K G++T L+G +GK
Sbjct: 305 PGSGEKAEVANEPPIEIS--LENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASGAGK 360
Query: 194 STLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPELTVRETFD 250
STLL L G L G I NG L + ++ +++SQ + ++ T+RE
Sbjct: 361 STLLNLLLGFLAP---TQGEIRVNGIDLRDLSPEAWRKQISWVSQ-NPYLFAGTIRENIL 416
Query: 251 FAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLG 310
A D + EI A + + + ++V K G
Sbjct: 417 LAR-------------PDASD----------EEIIAALDQAGL--------LEFVPKPDG 445
Query: 311 LDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLR 370
LD TV+G + G+SGGQ +R+ ++ P L +DE + LD+ T QI+
Sbjct: 446 LD----TVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE-QIIL--- 496
Query: 371 NFVHQM--DATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLE 417
+ ++ T+L+ + E D +++L G LV QG E+ E
Sbjct: 497 QALQELAKQKTVLVITHR--LEDAADADRIVVLDNGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 18/168 (10%)
Query: 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------K 905
+L+NVS G AL+G SG GK+TL +L G ++ +G++ G P
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS--QGNVSWRGEPLAKLNRA 82
Query: 906 EQSTFARISGYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963
++ F R V Q+ I + P+ TV E + LR + K +R E++R V+L
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDL 140
Query: 964 D-SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
D S+ D P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 141 DDSVLDKR---PPQ--LSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (156), Expect = 8e-11
Identities = 80/295 (27%), Positives = 130/295 (44%), Gaps = 31/295 (10%)
Query: 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLA 886
+ F VNY S+ + + L++ G TAL+G +G+GK+TL+ L
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEV--------KKGSYTALIGHTGSGKSTLLQHLN 53
Query: 887 G--RKTGGYIE-GDIKISGYPKEQST--FARISGYVEQNDIHSPQVTVEESLWFSANLRL 941
G + T G + GDI +S K++ + G V Q Q+ E L A
Sbjct: 54 GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ--FPESQLFEETVLKDVAFGPQ 111
Query: 942 SKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIF 1001
+ + K + + E + +V L F S G Q +R+ IA L P ++
Sbjct: 112 NFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGG----QMRRVAIAGILAMEPEVLV 167
Query: 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+DEPT+GLD +A +M+ + +G+TVV H D+ + D + L+++G + G
Sbjct: 168 LDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCG 226
Query: 1062 GKLGVHSKTMIDYFQALDGIPSIPSGYNPATWM---LEVTTAATEEKLGVDFADV 1113
T D FQ +D + + G AT L+ T A T EKL + A++
Sbjct: 227 --------TPSDVFQEVDFLKAHELGVPKATHFADQLQKTGAVTFEKLPITRAEL 273
|
Length = 288 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 9e-11
Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 41/223 (18%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTF 910
+L +VS PG +TALVG SG+GK+T++ +L + GG + D G P
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD----GKP------ 77
Query: 911 ARISGYVEQNDIHSPQVTV-EESLWFSANLR--------------LSKEVSKNQRHEFVE 955
IS Y E +HS V +E + F+ +L+ + + K H F+
Sbjct: 78 --ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFIS 134
Query: 956 EVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
EL S D VG GS LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 135 ------ELASGYDTEVGEKGSQ-LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058
V + + + RTV+ H+ + E D++L++ GGR+
Sbjct: 188 QVQQALYDW-PERRTVLVIAHR--LSTVERADQILVLD-GGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 61.2 bits (150), Expect = 1e-10
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY---KLDEFH 225
+L DVS +KPG ++GP SGKSTLL L D + SG I +G LD
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 226 VQRTSAYISQTDNHIPELTVRE 247
+++ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 31/253 (12%)
Query: 863 SPGV-LTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQ-STFARISGY 916
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79
Query: 917 VEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG 975
V Q P ++V NLR K ++R E V+ L+ + L L PG
Sbjct: 80 VFQEARLFPHLSVRG------NLRYGMKRARPSERRISFERVIELLGIGHL---LGRLPG 130
Query: 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCT 1034
LS +++R+ I L+++P ++ MDEP + LD R I+ R + G ++
Sbjct: 131 R--LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188
Query: 1035 IHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWM 1094
H ++ D +++++ GRV G I A +P + +
Sbjct: 189 SHSLQ-EVLRLADRVVVLED-GRVAAAGP--------IAEVWASPDLPWLA--REDQGSL 236
Query: 1095 LEVTTAATEEKLG 1107
+E A ++ G
Sbjct: 237 IEGVVAEHDQHYG 249
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-10
Identities = 62/213 (29%), Positives = 95/213 (44%), Gaps = 22/213 (10%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE-QSTFARI 913
L ++S G + AL+G +GAGK+TL+ +L+G G I I G ST A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 914 SGYVEQNDIH-----SPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE---LDS 965
+ V I+ P++TV E+L+ +L + R E +E +D
Sbjct: 78 AAGVAI--IYQELHLVPEMTVAENLYLG---QLPHKGGIVNRRLLNYEAREQLEHLGVDI 132
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
D + + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 133 DPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR 187
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058
GR ++ H+ +IF D + + K G V
Sbjct: 188 AEGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQN---D 921
G + ALVG +G+GK+TL L G G I I G P Q+ + YV Q+ D
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 922 IHSPQVTVEESLWFS-----ANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976
P V VE+ + LR +K+ + + V + V++ R +G
Sbjct: 91 WSFP-VLVEDVVMMGRYGHMGWLRRAKK----RDRQIVTAALARVDMVEFRHRQIG---- 141
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 -ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-10
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 38/170 (22%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS 908
+ LL ++S G A+VG +GAGK+TL+ +LAG G + G +K+ G +
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
GY +Q H ++ ++++ E + E + +R
Sbjct: 387 -----IGYFDQ---HRDELDPDKTVL-----------------EELSEGFPDGDEQEVRA 421
Query: 969 AL--VGFPGS------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L GF G LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 27/209 (12%)
Query: 865 GVLTALVGSSGAGKTTLMDVL-------AGRKTGGYIEGDIKISGYPKEQSTFARIS-GY 916
G + ++G SG+GK+T + +L AG+ +I+G+ + P E R G
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVELREVRRKKIGM 75
Query: 917 VEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976
V Q P +T+ ++ L + +R E E+++LV L+ +P
Sbjct: 76 VFQQFALFPHMTILQNTSLGPEL---LGWPEQERKEKALELLKLVGLEEYEHR---YPDE 129
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTI 1035
LS ++R+ +A L A P I+ MDE S LD + ++ T +T+V
Sbjct: 130 --LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187
Query: 1036 HQPSIDIFEAF---DELLLMKRGGRVIYG 1061
H D+ EA D +++MK G V G
Sbjct: 188 H----DLDEAIRIGDRIVIMKAGEIVQVG 212
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 19/196 (9%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR--ISGYVEQNDI 922
G + A++G SGAGK+TL++++AG G IK++ + +S ++N++
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNL 81
Query: 923 HSPQVTVEESLWFSAN--LRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980
+TV +++ + L+L+ E + E V + + V + D L P LS
Sbjct: 82 F-AHLTVRQNIGLGLHPGLKLNAE-----QQEKVVDAAQQVGIADYLDRL---PEQ--LS 130
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1039
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 1040 IDIFEAFDELLLMKRG 1055
D ++ ++ +G
Sbjct: 191 -DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 54/259 (20%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--- 224
+L+ VS ++PG + +LGP +GKSTLL AL+G+L SG +T NG L+ +
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL---SPDSGEVTLNGVPLNSWPPE 71
Query: 225 HVQRTSAYISQTDNHIPELTVRETFDFAAR-WQGANEGFAAYINDLNRLEKERNIRPSPE 283
+ R A + Q + TV+E + E E++ I
Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREP-----------EEDERI----- 115
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEM--- 340
+ A+ + DY R +SGG+++RV +
Sbjct: 116 AAQALAATDL---SGLAGRDY--------------------RTLSGGEQQRVQLARVLAQ 152
Query: 341 ---IVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397
V + LF+DE ++ LD + ++ R + A + A+L D
Sbjct: 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVL--AVLHDLNLAAQYADR 210
Query: 398 LLLLSEGHLVYQGPRAEVL 416
++LL +G ++ G +VL
Sbjct: 211 IVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
LL NVS +PG LVG +GAGK+TL+ +LAG G++ +
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKGLRV------- 68
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEV--MRLVELDSLRDAL- 970
GY+ Q P+ TV + + + + + + L EL++L + L
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 971 --------------VGFPGS----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+GFP S LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187
Query: 1013 A 1013
+
Sbjct: 188 S 188
|
Length = 530 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-10
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 27/201 (13%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS------GYV 917
PG L+G +GAGKTT +L G T GD ++G +S IS GY
Sbjct: 1964 PGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGYC 2017
Query: 918 EQNDIHSPQVTVEESLWFSANLR--LSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG 975
Q D +T E L+ A LR ++E+ K ++ + L D L G
Sbjct: 2018 PQFDAIDDLLTGREHLYLYARLRGVPAEEIEK-----VANWSIQSLGLSLYADRLAG--- 2069
Query: 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T
Sbjct: 2070 --TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
Query: 1036 HQPSIDIFEAF-DELLLMKRG 1055
H S++ EA L +M +G
Sbjct: 2128 H--SMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 15/184 (8%)
Query: 866 VLTALVGSSGAGKTTLM---DVLAGRKTGGYIEGDIKISG---YPKEQSTFA--RISGYV 917
+ AL+G SG GK+TL+ + L +EG++++ G Y + R G V
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 918 EQNDIHSPQVTVEESLWFSANLRLSKEV-SKNQRHEFVEEVMRLVEL-DSLRDALVGFPG 975
Q P +T+ +++ + ++L+ V SK + E VE ++ L D ++D L +P
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148
Query: 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035
+ LS QR+RL IA L P I+ MDEPT+ +D A + + + T+V
Sbjct: 149 N--LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEYTIVLVT 205
Query: 1036 HQPS 1039
H P+
Sbjct: 206 HSPA 209
|
Length = 253 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 48/200 (24%), Positives = 80/200 (40%), Gaps = 23/200 (11%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------PKEQS 908
L V+ G + A++G +G+GK+TL +AG + G I G P E+
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER- 74
Query: 909 TFARISGYVE-QNDIHSPQVTVEESLWFSANLRLS----KEVSKNQRHEFVEEVMRLVEL 963
AR ++ Q P V+ E L + N R S + + + ++ + L+ +
Sbjct: 75 --ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 964 DSL---RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
D R GF G ++KR I + P + +DE SGLD A IV
Sbjct: 133 DEEFLNRSVNEGFSGG------EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG 186
Query: 1021 VRNTVDTGRTVVCTIHQPSI 1040
+ + R+ + H +
Sbjct: 187 INRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 2e-10
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 46/224 (20%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR---KTGGYIE-GDIKISGYPKEQ--S 908
L N+S PG +VG +G+GK++L+ L R + G I + IS S
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKN----QRHEFVEEVMRLVELD 964
+ I PQ + + FS +R N + EE+ + +E
Sbjct: 79 RISII-----------PQ----DPVLFSGTIR------SNLDPFGEYS-DEELWQALERV 116
Query: 965 SLRDALVGFP---------GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
L++ + P G LS QR+ L +A L+ I+ +DE T+ +D A
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
++ +T+R TV+ H+ +D D +L++ + GRV+
Sbjct: 177 LIQKTIR-EAFKDCTVLTIAHR--LDTIIDSDRILVLDK-GRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 18/153 (11%)
Query: 871 VGSSGAGKTTLMDVLAGRK--TGG--YIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQ 926
VG SG GK+TL+ ++AG + T G +I G+ +++ P + R G V Q+ P
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAE----RGVGMVFQSYALYPH 89
Query: 927 VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKR 986
++V E++ F L+L+ K + ++ V +V +++L L D LS QR+R
Sbjct: 90 LSVAENMSFG--LKLAG-AKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQR 141
Query: 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 14/174 (8%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAG-RKTGGYIEGDIKISG 902
+ + L N++ +TAL+G SG GK+TL+ D++ G R G + I
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 903 YPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE 962
+ R G V Q P ++ +++ + RL K + E VEE ++
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFPM-SIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAA 129
Query: 963 L-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
L D ++D L GLS Q++RL IA L P ++ +DEPTS LD A
Sbjct: 130 LWDEVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 48/253 (18%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---H 225
+L D+S + PG ++G SGKSTLL L G G I +G L++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 226 VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEK-ERNIRPSPEI 284
++R Y+ Q D + ++RE N E+ + +
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALG--------------NPEATDEEIIEAAQLA-GA 588
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
F + L + +T VG + +SGGQ++R+ ++
Sbjct: 589 HEF--------------------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSK 627
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
K L +DE ++ LD T I++ L Q+ + ++ T D +++L +G
Sbjct: 628 PKILLLDEATSALDPETEAIILQNL----LQILQGRTVIIIAHRLSTIRSADRIIVLDQG 683
Query: 405 HLVYQGPRAEVLE 417
+V QG E+L
Sbjct: 684 KIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 164 RHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE 223
R + + +S + G +L GP SGK+TLL +AG L +G I +G +D+
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDD 68
Query: 224 FHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAA 264
V Y+ + P LTV E +F A + G E A
Sbjct: 69 PDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIA 109
|
Length = 207 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 39/179 (21%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 902
L +++ +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNI 76
Query: 903 YPKEQSTFA---RISGYVEQNDIHSPQV---TVEESLWFSANLRLSKEVSKNQRHEFVEE 956
Y + R+ G V Q P ++ +++ + LRL K E VE
Sbjct: 77 YDPKVDVVELRRRV-GMVFQ----KPNPFPMSIYDNV--AYGLRLHGIKDKELD-EIVES 128
Query: 957 VMRLVEL-----DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
++ L D L + + GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 129 SLKKAALWDEVKDRLHKS------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 63/232 (27%)
Query: 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLA 886
++ +NV++ PE++ Q+L N+S G AL+G SG+GK+TL+
Sbjct: 1 LSINNVSF-----------SYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLL---- 45
Query: 887 GRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVS 946
+ GD+K ++T++ LS +S
Sbjct: 46 -----QLLTGDLKPQ----------------------QGEITLDGVPVSDLEKALSSLIS 78
Query: 947 K-NQR-HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDE 1004
NQR + F +LR+ L G S G +R+RL +A L+ + I+ +DE
Sbjct: 79 VLNQRPYLFD---------TTLRNNL-GRRFSGG----ERQRLALARILLQDAPIVLLDE 124
Query: 1005 PTSGLDARAAAIVMRTVRNTVDTGRTVV-CTIHQPSIDIFEAFDELLLMKRG 1055
PT GLD ++ + V +T++ T H I E D++L ++ G
Sbjct: 125 PTVGLDPITERQLLSLIFE-VLKDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 61/240 (25%), Positives = 104/240 (43%), Gaps = 28/240 (11%)
Query: 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDV 884
+++ F NV+Y M +G L N+S G ALVG +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 885 LAGRKTGGYIEGDIKISGYP-------KEQSTFARISGYVEQ-NDIHSPQVTVEESLWFS 936
G I I+GY K + V Q + + TV + + F
Sbjct: 53 FNALLKPS--SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG 110
Query: 937 A-NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVA 995
N S++ +K + +++++V L + L+ LS Q +R+ IA +
Sbjct: 111 PKNFGFSEDEAKEKALKWLKKV-------GLSEDLIS-KSPFELSGGQMRRVAIAGVMAY 162
Query: 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
P I+ +DEP +GLD +M+ ++ G TV+ H D+ E D++L+++ G
Sbjct: 163 EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 18/177 (10%)
Query: 870 LVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG-------YPKEQSTFA--RISGYVEQN 920
L+G SGAGK++L+ VL + G + I+G P +++ R G V Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
Query: 921 DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980
P +TV+E+L A R+ +SK+Q E++++ + L D +P LS
Sbjct: 91 YNLWPHLTVQENL-IEAPCRVLG-LSKDQALARAEKLLKRLRLKPYADR---YPLH--LS 143
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-10
Identities = 60/264 (22%), Positives = 111/264 (42%), Gaps = 72/264 (27%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY---KLDEFHV 226
L++VS ++PG ++G SGKSTLL L G + G++ +G ++D +
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 227 QRTSAYISQTDNHIPEL---TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
+R Y+ Q P L T+R+ A Y +D
Sbjct: 538 RRNIGYVPQD----PRLFYGTLRDNIALGAP----------YADD--------------- 568
Query: 284 IDAFMKASSVGGKKHSVSTDYV-LKVLGLDLCSETVVGNDMI----RGVSGGQKKRVTTG 338
+ ++A+ + G T++V GLD+ I R +SGGQ++ V
Sbjct: 569 -EEILRAAELAG-----VTEFVRRHPDGLDM---------QIGERGRSLSGGQRQAVALA 613
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL-----MALLQPPPETFD 393
++ L +DE ++ +D+ + + L+ ++ T++ +LL D
Sbjct: 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-------D 664
Query: 394 LFDDLLLLSEGHLVYQGPRAEVLE 417
L D ++++ G +V GP+ +VLE
Sbjct: 665 LVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 59/264 (22%), Positives = 95/264 (35%), Gaps = 62/264 (23%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL------ 221
L +++ + PG ++GP +GKSTLL + ++ S SG+I G +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 222 DEFHVQRTSAYISQTDNHIPELTVRET-----FDFAARWQGANEGFAAYINDLNRLEKER 276
++R I Q N I LTV E + W+ L R +E
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSL----------LGRFSEED 122
Query: 277 NIRPSPEIDAFMKASSVG-GKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
R A VG K D +SGGQ++RV
Sbjct: 123 KER------ALSALERVGLADKAYQRADQ----------------------LSGGQQQRV 154
Query: 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL- 394
+ + DE LD T+ Q++ L+ + T+++ L Q DL
Sbjct: 155 AIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-----VDLA 209
Query: 395 ---FDDLLLLSEGHLVYQGPRAEV 415
D ++ L G +V+ G +E+
Sbjct: 210 KKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQ 907
K ++N+S + L+G +GAGK+TL+ ++ G R T G+I G+P +
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTR 66
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+I +E ++ +T E+L L + R ++EV+ +V+L +
Sbjct: 67 KDLHKIGSLIESPPLYE-NLTARENLKVHTTLLGLPD----SR---IDEVLNIVDLTN-- 116
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
G + S ++RL IA+ L+ +P ++ +DEPT+GLD + +R+ +
Sbjct: 117 ---TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSK 1069
G TV+ + H S E+ + +I G LG K
Sbjct: 174 GITVILSSHILS--------EVQQLADHIGIISEGVLGYQGK 207
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 68/267 (25%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY-----KLD 222
L DV+ + G M ++GP +GKSTLL +L G +D + SG I +NG K
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 223 EFHVQRTS-AYISQTDNHIPELTVRET-----FDFAARWQGANEGFAAYINDLNRLEKER 276
E R I Q N +P L+V E + + W+ ++ +K +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRS-------LFGLFSKEDKAQ 127
Query: 277 NIRPSPEID----AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQK 332
+ + A+ +AS++ G GQ+
Sbjct: 128 ALDALERVGILDKAYQRASTLSG----------------------------------GQQ 153
Query: 333 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETF 392
+RV +V K + DE LD + +++ L++ + T+++ L Q
Sbjct: 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-----V 208
Query: 393 DL----FDDLLLLSEGHLVYQGPRAEV 415
DL D ++ L G +V+ GP +E+
Sbjct: 209 DLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 48/261 (18%)
Query: 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD--EF 224
LT +NDVS V+PG + L+GP +GK+TL + G S SG + + G +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 HVQRTSAYISQTDNHI---PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
H + I++T P LTV E A + G L R + R
Sbjct: 74 H-RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGL------LGRPRARKEER-- 124
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
+A +A +L+ +GL ++ GN +S GQ++R+ +
Sbjct: 125 ---EARERA------------RELLEFVGLGELADRPAGN-----LSYGQQRRLEIARAL 164
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL-----MALLQPPPETFDLFD 396
K L +DE + GL+ T ++ + +R + TIL M L+ L D
Sbjct: 165 ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV------MGLAD 218
Query: 397 DLLLLSEGHLVYQGPRAEVLE 417
+++L+ G ++ +G EV
Sbjct: 219 RIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 5e-10
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTL---MDVLAGRKTGGYIEGDIKISGYP--KEQ 907
L N++ +TA++G SG GK+T ++++ + G++ +G K +
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 908 STFARIS---GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL- 963
+ G V Q PQ + + R+ +K + E VE+ ++ V L
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAY---GPRIHGTKNKKKLQEIVEKSLKDVALW 142
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
D ++D L + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 143 DEVKDRL--HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 65/203 (32%), Positives = 96/203 (47%), Gaps = 22/203 (10%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTL------MDVLAGRKTGGYIEGDIKISGY- 903
K + L++VS F P +TAL+G SG+GK+TL M+ L T I G I +G+
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHN 73
Query: 904 ---PKEQSTFARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
P+ + R G V Q P E ++ LRL K E VE+ ++
Sbjct: 74 IYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVY---GLRLKGIKDKQVLDEAVEKSLK 130
Query: 960 LVEL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
+ D ++D L + GLS Q++R+ IA L +P II +DEPTS LD +A +
Sbjct: 131 GASIWDEVKDRL--HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIE 188
Query: 1019 RTVRNTVD--TGRTVVCTIHQPS 1039
T+ D T V ++ Q S
Sbjct: 189 ETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 25/210 (11%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFA 911
L +SG G + LVG +GAGK+TL+ +AG +G G I+ +G P E + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDAL 970
R Y+ Q + V L R E + +V + L D L +
Sbjct: 72 RHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLNDVAGALALDDKLGRST 123
Query: 971 VGFPGSSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 1025
G QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 124 NQLSGGEW----QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
G +V + H + + A L+KRG
Sbjct: 180 QQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 6e-10
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 154 LTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGN 213
+ L R T L++VS +K G + L+GP SGKSTLL A+AG L + SG
Sbjct: 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGE 55
Query: 214 ITYNGYKLDEFH---VQRTSAYISQ 235
I +G + + ++R Y+ Q
Sbjct: 56 ILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 59/260 (22%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
+L+DVS + G +T ++GP +GKST LL++ +L K SG IT +G +L +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 228 RTSAYIS--QTDNHI-PELTVRETFDFAARWQGANEGFAAYINDLNRLEKE-RNIRPSPE 283
+ +S + +NHI LTVR+ GF + RL KE R I
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLV-----------GFGRFPYSQGRLTKEDRRI----- 115
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVG 343
I+ + +Y L L + + + +SGGQ++R ++
Sbjct: 116 INEAI--------------EY------LHL---EDLSDRYLDELSGGQRQRAFIAMVLAQ 152
Query: 344 PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL------FDD 397
+ +DE LD + QI+K LR ++ TI++ L D+ D
Sbjct: 153 DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCYSDH 205
Query: 398 LLLLSEGHLVYQGPRAEVLE 417
++ L G +V QG E+++
Sbjct: 206 IVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 7e-10
Identities = 60/262 (22%), Positives = 96/262 (36%), Gaps = 60/262 (22%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
IL+ V V G + +LG SGKSTLL + G L G I +G
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGEILIDGED------- 71
Query: 228 RTSAYISQTDNHIPELTVRETFDFAARW----QGANEGFAAYINDLNRLE------KERN 277
IP+L+ E ++ R Q A + L E +E
Sbjct: 72 ------------IPQLSEEELYEIRKRMGVLFQ-----QGALFSSLTVFENVAFPLREHT 114
Query: 278 IRPSPEID--AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
P I MK L+++GL + +SGG +KRV
Sbjct: 115 KLPESLIRELVLMK----------------LELVGLR----GAAADLYPSELSGGMRKRV 154
Query: 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLF 395
I + LF+DE ++GLD + I + +R + T++M +
Sbjct: 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIA 213
Query: 396 DDLLLLSEGHLVYQGPRAEVLE 417
D + +L++G ++ +G E+L
Sbjct: 214 DRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-10
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 38/183 (20%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE---QST 909
+L +VS PG A+VG SG+GK+TL+ +L G +T G + G
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGLDVQA 524
Query: 910 FAR-----------ISGYVEQNDIHSPQVTVEESLWFSANLR-LSKEVSKN--QRHEFVE 955
R +SG + +N +T++E+ W +A + L++++ H +
Sbjct: 525 VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEA-WEAARMAGLAEDIRAMPMGMHTVIS 583
Query: 956 EVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
E G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 584 E------------------GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1016 IVM 1018
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-10
Identities = 62/213 (29%), Positives = 95/213 (44%), Gaps = 35/213 (16%)
Query: 863 SPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPKEQSTFARISGYVEQ 919
G L L+G +GAGKTTL+ R G I +G +K++G + R GYV Q
Sbjct: 4 DKGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQ 56
Query: 920 NDIHS-----PQVTVEESLWFSANLRLSKEVSKNQRHEF--VEEVMRLVELDSLRDALVG 972
H P ++V ++ S + + +F V + +R V L L D VG
Sbjct: 57 R--HEFAWDFP-ISVAHTV-MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG 112
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++
Sbjct: 113 -----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAIL 167
Query: 1033 CTIHQPSIDIFEAF---DELLLMKRGGRVIYGG 1062
T H D+ +A D ++L+ GRVI G
Sbjct: 168 MTTH----DLAQAMATCDRVVLLN--GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 57/258 (22%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
F+ + ++ ++ VS VKPG +T LLGP +GK+T L LAG L+ +G T +G+
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGF 67
Query: 220 KL--DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERN 277
+ + +R ++S + LT RE ++ A G L E
Sbjct: 68 DVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG-----------LKGDELTAR 116
Query: 278 IRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTT 337
+ + + LG++ + VG G S G +++V
Sbjct: 117 L------------------------EELADRLGMEELLDRRVG-----GFSTGMRQKVAI 147
Query: 338 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDA---TILMA--LLQPPPETF 392
+V L +DE +TGLD T + LR F+ Q+ A IL + ++Q E
Sbjct: 148 ARALVHDPPVLLLDEPTTGLDVMAT----RALREFIRQLRALGKCILFSTHIMQ---EVE 200
Query: 393 DLFDDLLLLSEGHLVYQG 410
L D +++L G +VY+G
Sbjct: 201 RLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 8e-10
Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 21/159 (13%)
Query: 867 LTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG---YPKEQSTFARIS-G 915
+TAL+G SG GK+TL+ D++ G K I G + + G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 916 YVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFP 974
V Q P +++ E++ + LR K E VE +R L D ++D L
Sbjct: 87 MVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH- 142
Query: 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
+ GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 -AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAG-RKTGGYIEGDIKISGYP 904
L +++ +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 905 KEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL- 963
+ R G V Q P+ ++ E++ + R+ E +K VE+ ++ L
Sbjct: 80 ADVVALRRKIGMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALW 136
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
D ++D L + LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 137 DEVKDRL--HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 44/207 (21%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HV 226
L VS V PG L+GP +GKSTLL L G +D + G+I NG L +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 227 QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS-PEID 285
+ A++ Q + T+ E NIR + P+
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAE-----------------------------NIRLARPDAS 424
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
++ D + L L +T +G G+SGGQ +R+ +
Sbjct: 425 DAEIREAL----ERAGLDEFVAALPQGL--DTPIGEGG-AGLSGGQAQRLALARAFLRDA 477
Query: 346 KTLFMDEISTGLDSSTTFQIVKCLRNF 372
L +DE + LD+ T ++++ LR
Sbjct: 478 PLLLLDEPTAHLDAETEAEVLEALRAL 504
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 1e-09
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD 222
+ T+L+DVS ++PG + +LGP +GKSTLL AL+G+L SG + NG L
Sbjct: 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLA 67
Query: 223 EF 224
++
Sbjct: 68 DW 69
|
Length = 258 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 56/222 (25%), Positives = 86/222 (38%), Gaps = 46/222 (20%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ- 227
IL V+ VK G + ++GP SGKSTL +AG S SG I + G L E
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE 73
Query: 228 --RTSAYIS-QTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
R +++ Q IP ++ E F +A L R+ R +
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLE-FLRSA------------------LNARRSARGEEPL 114
Query: 285 DAF-----MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE 339
D +KA L +LG+D E + + G SGG+KKR +
Sbjct: 115 DLLDFLKLLKA--------------KLALLGMD---EEFLNRSVNEGFSGGEKKRNEILQ 157
Query: 340 MIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
M + K +DEI +GLD + + + + ++
Sbjct: 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLI 199
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG-- 902
L +S + A +G SG GK+T + D++ + +EG+I+I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 903 -YPK--EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
Y K + + G V Q P+ E + LR++ + VEE ++
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAY---GLRVNGVKDNAFIRQRVEETLK 128
Query: 960 LVEL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
L D ++D L + LS Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 129 GAALWDEVKDKLK--ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 24/178 (13%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 901
EKK + NV+ +TA++G SG GKTTL+ D + G + +EG I
Sbjct: 15 EKKA--VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFK 68
Query: 902 GY----PKEQSTFARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEE 956
G P+ T R G V Q P +++ +++ F R+ SK++ VEE
Sbjct: 69 GQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEE 125
Query: 957 VMRLVEL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
++ L D ++ L PG+ LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 126 SLKKAALWDEVKSEL-NKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 18/205 (8%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L V+ G +L+G SG GK+TL+++++G G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS--GGVILEGKQITEPGPDRM- 57
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFP 974
V QN P +TV E++ + + R+ ++SK++R VEE + LV L +A P
Sbjct: 58 -VVFQNYSLLPWLTVRENIALAVD-RVLPDLSKSERRAIVEEHIALV---GLTEAADKRP 112
Query: 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1033
G LS ++R+ IA L P ++ +DEP LDA + + + TV+
Sbjct: 113 GQ--LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 1034 TIHQPSIDIFEAF---DELLLMKRG 1055
H D+ EA D ++++ G
Sbjct: 171 VTH----DVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-09
Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 53/227 (23%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
+ ++T L D+S V+ G L+GP GKSTLL +AG + SG + +G
Sbjct: 10 YGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGE 66
Query: 220 KLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIR 279
+ R Y+ Q D +P LTV + N + + + E
Sbjct: 67 PVTGPGPDR--GYVFQQDALLPWLTVLD-----------NVALGLELQGVPKAEARE--- 110
Query: 280 PSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV---- 335
+ ++ VG N +SGG ++RV
Sbjct: 111 ---RAEELLEL--VGLSGFE---------------------NAYPHQLSGGMRQRVALAR 144
Query: 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
+ V P L +DE + LD+ T Q+ + L + + T+L+
Sbjct: 145 A---LAVDP-DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL 187
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 64/273 (23%), Positives = 101/273 (36%), Gaps = 77/273 (28%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG- 218
F S+ L+DVS +K G L+G SGKSTL A+ G L + SG+I ++G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGK 67
Query: 219 --YKLDE---FHVQRTSAYISQTD-----NHIPELTVRETFDFAARWQGANEGFAAYIND 268
KL ++ + Q D N P +T+ E E +
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQ-DPMSSLN--PRMTIGEQI---------AEPLRIHGKL 115
Query: 269 LNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVS 328
+ ++ + +L +GL V N +S
Sbjct: 116 SKKEARKEAVL------------------------LLLVGVGLP----EEVLNRYPHELS 147
Query: 329 GGQKKRVTTGEMI-----VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
GGQ++RV I + P K L DE ++ LD S QI+ L+ ++ T+L
Sbjct: 148 GGQRQRV----AIARALALNP-KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI 202
Query: 384 LLQPPPETFDL------FDDLLLLSEGHLVYQG 410
T DL D + ++ G +V +G
Sbjct: 203 -------THDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-09
Identities = 62/266 (23%), Positives = 94/266 (35%), Gaps = 72/266 (27%)
Query: 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-- 224
IL VS V G + LLG +GK+TLL + G L SG+I ++G +
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 H--VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDL----NRLEKERNI 278
H + Y+ + PELTV E + A + + RL KER
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLL-LGAYARRRAKRKARLERVYELFPRL-KER-- 125
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG 338
K L L SGG+++ +
Sbjct: 126 ---------------------------RKQLAGTL--------------SGGEQQMLAIA 144
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM-------ALLQPPPET 391
++ K L +DE S GL +I + +R + TIL+ AL
Sbjct: 145 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRE-LRDEGVTILLVEQNARFAL------- 196
Query: 392 FDLFDDLLLLSEGHLVYQGPRAEVLE 417
++ D +L G +V +G AE+L
Sbjct: 197 -EIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-09
Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 47/250 (18%)
Query: 829 FHNVNY-YVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG 887
F NV++ Y L NVS PG A++G G+GK+TL+ +L G
Sbjct: 466 FRNVSFAYPGQETPA------------LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513
Query: 888 RKTGGY--IEGDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLS 942
Y EG + + G Q + R GYV Q D T+ +++ A
Sbjct: 514 L----YQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLFYGTLRDNIALGA----- 563
Query: 943 KEVSKNQRHEFVEEVMRLVELDSLRDALVGFP---------GSSGLSTEQRKRLTIAVEL 993
+ EE++R EL + + + P LS QR+ + +A L
Sbjct: 564 -------PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL 616
Query: 994 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053
+ +P I+ +DEPTS +D R+ ++ + G+T+V H+ S + + D +++M
Sbjct: 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMD 673
Query: 1054 RGGRVIYGGK 1063
G V G K
Sbjct: 674 NGRIVADGPK 683
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-09
Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 52/219 (23%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 911
L +++ G L A+VG G+GK++L+ L G K G + + G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL----SGSVSVPG--------- 66
Query: 912 RISGYVEQ-----NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
I+ YV Q N T+ E++ F E E+V++ L+
Sbjct: 67 SIA-YVSQEPWIQNG------TIRENILFGKPF----------DEERYEKVIKACALE-- 107
Query: 967 RDALVGFP-------GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAI 1016
D L P G G LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 108 PD-LEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ + +T + HQ + + D+++++ G
Sbjct: 167 FENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L +VS G T++VG +G+GK+T+ ++ G + G+I + F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLR 82
Query: 915 ---GYVEQN-DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
G V QN D V+ + F + V ++ H V E ++ V++ D
Sbjct: 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLE---NHAVPYDEMHRRVSEALKQVDMLERADYE 139
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGR 1029
P + LS Q++R+ IA L NPS+I +DE TS LD A ++ VR +
Sbjct: 140 ---PNA--LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194
Query: 1030 TVVCTIHQPSIDIFEAF--DELLLMKRG 1055
T++ H D+ EA D +++M +G
Sbjct: 195 TIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 905
Q L ++ +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDGQDI 72
Query: 906 EQSTFARIS-----GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRL 960
+S G V Q P +++ +++ + R K + E VE+ ++
Sbjct: 73 YKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGP--RTHGIKDKKKLDEIVEKSLKG 129
Query: 961 VEL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L D ++D L + GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 130 AALWDEVKDRLK--KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 3e-09
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-- 225
T L+D+S V+ G + LLGP +GK+TL+ + G L SG I G + +
Sbjct: 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEE 70
Query: 226 VQRTSAYISQTDNHIPELTVRETFDF 251
V+R Y+ + + LTVRE
Sbjct: 71 VKRRIGYLPEEPSLYENLTVRENLKL 96
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 45/219 (20%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 912
+L NVS G +VG +GAGK+TL +LA + EG I+I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG---------- 69
Query: 913 ISGYVEQNDIHSPQVTVEESL--------WFSANLRLSKEVSKNQRHEFVEEVMRLVELD 964
+ P + SL FS +R + + E + +R+ E
Sbjct: 70 ------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSE-- 121
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
G LS QR+ L +A L+ P ++ +DE T+ +D A++ +T+R
Sbjct: 122 ----------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171
Query: 1025 VDTGRTVVCTIH--QPSIDIFEAFDELLLMKRGGRVIYG 1061
T T++ H + ID +D++L+M G Y
Sbjct: 172 F-TNSTILTIAHRLRTIID----YDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 905
Q L ++S F +TAL+G SG GK+T + D++ G + +EG+I + G
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR----VEGEILLDGENI 75
Query: 906 EQS-----TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRL 960
R G V Q P+ ++ E++ + LR++ K E VE +R
Sbjct: 76 YDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRVNGVKDKAYLAERVERSLRH 132
Query: 961 VEL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
L D ++D L + GLS Q++RL IA L P ++ MDEP S LD A
Sbjct: 133 AALWDEVKDRL--HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 3e-09
Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 26/233 (11%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKE 906
K +Q L+NVS G + ++G+SGAGK+TL+ ++L +G I ++
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNS 75
Query: 907 QSTFAR--ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEV---SKNQRHEFVEEVMRLV 961
+ T AR I + ++ S + N+ L E+ K++ V E++ LV
Sbjct: 76 ELTKARRQIGMIFQHFNLLSSRTVFG-------NVALPLELDNTPKDEIKRKVTELLALV 128
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
L D+ +P S LS Q++R+ IA L +NP ++ DE TS LD ++ +
Sbjct: 129 GLGDKHDS---YP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183
Query: 1022 RNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLG---VHSKT 1070
+ G T++ H+ +D+ + + + + G +I G + H KT
Sbjct: 184 KEINRRLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 17/214 (7%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYP-KEQS 908
L+ +++ G + ALVG SG+GK+ ++ +L T G+I + G P S
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 909 TFARISGYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
R + QN + P T+ LR ++SK R +E + V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNH--AIETLRSLGKLSKQARALILE-ALEAVGLPDP 115
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1025
+ L +P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYPFQ--LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
G ++ H + + DE+ +M GR++
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDD-GRIV 205
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 27/212 (12%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L ++S V PG ALVG SG+GK+TL++++ + G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 915 GYVEQ--NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL-- 970
V D+ T+ ++ + +++ + + +E + D L
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADRAE----IERALAAAYAQDFVDKLPL 457
Query: 971 -VGFP-GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
+ P G +G LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 458 GLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALE 513
Query: 1027 ---TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
GRT + H+ S E D +++M G
Sbjct: 514 RLMQGRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 4e-09
Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 51/260 (19%)
Query: 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD--EF 224
L L+DVS V+PG + L+GP +GK+TL ++G L + SG++ ++G +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 225 HVQRTSAYIS---QTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
H + I Q PELTV E AA+ + + + +ER R
Sbjct: 70 H-EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS-----GLLLARARREEREARE- 122
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
+A + +L+ +GL ++ G +S GQ++R+ +
Sbjct: 123 -------RA------------EELLERVGLADLADRPAGE-----LSYGQQRRLEIARAL 158
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL-----MALLQPPPETFDLFD 396
K L +DE + GL+ T ++ + +R + + T+L M ++ L D
Sbjct: 159 ATDPKLLLLDEPAAGLNPEETEELAELIRE-LRERGITVLLVEHDMDVV------MSLAD 211
Query: 397 DLLLLSEGHLVYQGPRAEVL 416
+ +L +G ++ +G EV
Sbjct: 212 RVTVLDQGRVIAEGTPDEVR 231
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 65/259 (25%), Positives = 109/259 (42%), Gaps = 53/259 (20%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
L+DVS + G + LLGP SGK+TLL +AG L+ SG I + G +
Sbjct: 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVP 70
Query: 226 VQ-RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
VQ R ++ Q +TV + F R K R+ RP
Sbjct: 71 VQERNVGFVFQHYALFRHMTVFDNVAFGLR------------------VKPRSERPP--- 109
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE-MIVG 343
+ + K H +LK++ LD + + +SGGQ++RV + V
Sbjct: 110 -----EAEIRAKVHE-----LLKLVQLDW-----LADRYPAQLSGGQRQRVALARALAVE 154
Query: 344 PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMD-----ATILMALLQPPPETFDLFDDL 398
P K L +DE LD+ ++ K LR ++ ++ T+ + Q E ++ D +
Sbjct: 155 P-KVLLLDEPFGALDA----KVRKELRRWLRRLHDELHVTTVFVTHDQ--EEALEVADRV 207
Query: 399 LLLSEGHLVYQGPRAEVLE 417
+++++G + G EV +
Sbjct: 208 VVMNKGRIEQVGTPDEVYD 226
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-09
Identities = 66/242 (27%), Positives = 99/242 (40%), Gaps = 32/242 (13%)
Query: 831 NVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--R 888
Y+ M +S G + L +V+ PG + AL+G +GAGK+TLM VL+G
Sbjct: 1 MATPYISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE 56
Query: 889 KTGGYIEGDIKISGYPKEQSTFARISG----YVEQNDIHSPQVTVEESLWFSANLRLSKE 944
T G I I Y K A G Y E + I ++TV E+L + K
Sbjct: 57 PTKGTI--TINNINYNKLDHKLAAQLGIGIIYQELSVID--ELTVLENL-YIGRHLTKKV 111
Query: 945 -----VSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSI 999
+ + ++ V L D V LS ++ L IA L+ + +
Sbjct: 112 CGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKV 166
Query: 1000 IFMDEPTSGLDARAAA---IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056
I MDEPTS L + ++M +R G +V H+ + +I D +MK G
Sbjct: 167 IIMDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDGS 222
Query: 1057 RV 1058
V
Sbjct: 223 SV 224
|
Length = 510 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-09
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 36/215 (16%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE---GDI-KISGYPKEQSTFARIS-GYV 917
G + ++G SG+GK+TL+ +L T G I DI K+S E R V
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLS--AAELRELRRKKISMV 111
Query: 918 EQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977
Q+ P TV E++ F ++ V K +R E E + LV L+ D +P
Sbjct: 112 FQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADK---YPNE- 164
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRNTVDTGRTV 1031
LS ++R+ +A L +P I+ MDE S LD ++RT + +T+
Sbjct: 165 -LSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELLELQAKLKKTI 218
Query: 1032 VCTIHQPSIDIFEAF---DELLLMKRGGRVIYGGK 1063
V H D+ EA D + +MK G ++ G
Sbjct: 219 VFITH----DLDEALRIGDRIAIMK-DGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-09
Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 27/210 (12%)
Query: 843 RSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE----GDI 898
RS E+++++L +S G + A+VG+SG+GK+TLM++L G ++ G
Sbjct: 12 RSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL------GCLDKPTSGTY 65
Query: 899 KISGY---PKEQSTFARIS----GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRH 951
+++G + A++ G++ Q +T +++ A + + + QR
Sbjct: 66 RVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRL 122
Query: 952 EFVEEVM-RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+E++ RL L D + P S LS Q++R++IA L+ +I DEPT LD
Sbjct: 123 LRAQELLQRL----GLEDRVEYQP--SQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
+ + VM + D G TV+ H P +
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKEQSTFARISGYVEQND 921
G LVG SG+GK+TL G I +G+I+ G + + + +
Sbjct: 312 RGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDGLSRKEMRPL--RRR 364
Query: 922 IH----------SPQVTVEESLWFSANLRL-SKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
+ SP++TV + + LR+ ++S +R + V E + V LD
Sbjct: 365 MQVVFQDPYGSLSPRMTVGQII--EEGLRVHEPKLSAAERDQRVIEALEEVGLD--PATR 420
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 421 NRYPHE--FSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 47/226 (20%), Positives = 78/226 (34%), Gaps = 52/226 (23%)
Query: 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF 224
+ L+ ++ + G L+GP +GKSTLL + + L SG I NG + +
Sbjct: 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL 68
Query: 225 HVQRTSAY------ISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI 278
+ + Q +P+ V E FA
Sbjct: 69 RGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALE------------------------ 104
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGL-DLCSETVVGNDMIRGVSGGQKKRVTT 337
V G V L L L + + +SGG+++RV
Sbjct: 105 --------------VTGVPPREIRKRVPAALELVGLSHKH---RALPAELSGGEQQRVAI 147
Query: 338 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
IV L DE + LD TT++I+ L+ ++ T+++A
Sbjct: 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI-NKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 10/190 (5%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKEQ 907
Q+L N+ G + ++G SG+GK+TL+ + L +G I +K++ ++
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ +G V Q P +T E++ F + SK + + E++ V L
Sbjct: 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGP--LRVRGASKEEAEKQARELLAKVGLAERA 130
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 131 HH---YP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185
Query: 1028 GRTVVCTIHQ 1037
G T+V H+
Sbjct: 186 GMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 39/213 (18%)
Query: 820 LPFQPLAMTFHNVNYYVDMPQAMR--SQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAG 877
L + A+ N+N + QA+ S IP+ ++ TA +G SG G
Sbjct: 19 LSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRV---------------TAFIGPSGCG 63
Query: 878 KTTLM-------DVLAGRKTGGYIEGDIKISG---YPK--EQSTFARISGYVEQNDIHSP 925
K+TL+ D++ + IEG+I++ G Y K + + R G V Q P
Sbjct: 64 KSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP 119
Query: 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFPGSSGLSTEQR 984
+ E ++ LRL ++ E VE +R L D ++D L + GLS Q+
Sbjct: 120 KSIYENVVY---GLRLQGINNRRVLDEAVERSLRGAALWDEVKDRL--HENAFGLSGGQQ 174
Query: 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
+RL IA + P ++ +DEPTS LD + +
Sbjct: 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 61/252 (24%), Positives = 97/252 (38%), Gaps = 53/252 (21%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRT 229
L+DVS V+PGR LLGP +GKSTL L + + G I+ G+ L +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDLRR-APRAA 72
Query: 230 SAYIS---QTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDA 286
A + Q +L+VR+ + A G L+R E I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG-----------LSRAEARARIAE------ 115
Query: 287 FMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRK 346
+L LGL +D +R ++GG ++RV ++
Sbjct: 116 ------------------LLARLGL-----AERADDKVRELNGGHRRRVEIARALLHRPA 152
Query: 347 TLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA--LLQPPPETFDLFDDLLLLSEG 404
L +DE + GLD ++ I +R ++L A L+ D L++L G
Sbjct: 153 LLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD----DRLVVLHRG 208
Query: 405 HLVYQGPRAEVL 416
++ G AE+
Sbjct: 209 RVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-09
Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 19/196 (9%)
Query: 869 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQ-- 926
ALVG +G+GK+TL +L G EG+I++ G P + +S V + + Q
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRP-----LSSLSHSVLRQGVAMVQQD 423
Query: 927 -VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFPGSSG--LSTE 982
V + ++ F AN+ L +++S+ Q + +E V +L EL SL D L G G LS
Sbjct: 424 PVVLADT--FLANVTLGRDISEEQVWQALETV-QLAELARSLPDGLYTPLGEQGNNLSVG 480
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1042
Q++ L +A LV P I+ +DE T+ +D+ + + + V T+V H+ S I
Sbjct: 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLST-I 538
Query: 1043 FEAFDELLLMKRGGRV 1058
EA D +L++ RG V
Sbjct: 539 VEA-DTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 30/203 (14%)
Query: 870 LVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQSTFARIS--GYVEQNDIH 923
++G SG+GK+TL+ + T G I+G I+ +++ R V Q+
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ-DIAAMSRKELRELRRKKISMVFQSFAL 113
Query: 924 SPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983
P TV E++ F ++ V + +R E E + LV L+ LS
Sbjct: 114 LPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGM 165
Query: 984 RKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1039
++R+ +A L +P I+ MDE S LD ++R +T+V H
Sbjct: 166 QQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE---LQKTIVFITH--- 219
Query: 1040 IDIFEAF---DELLLMKRGGRVI 1059
D+ EA D + +MK GR++
Sbjct: 220 -DLDEALRLGDRIAIMK-DGRLV 240
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 7e-09
Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 56/253 (22%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
++++S V PG + LLGP +GK+T + G L+ + G IT+NG L +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 228 RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287
R Y+ + P++TV + + A +G + I+ ++ A+
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM---------------PKAEIQK--KLQAW 114
Query: 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKT 347
++ + GKK I+ +S G ++++ ++ +
Sbjct: 115 LERLEIVGKKT-----------------------KKIKELSKGNQQKIQFISAVIHEPEL 151
Query: 348 LFMDEISTGLDSSTTFQIVKCLRNFVHQMD---ATILMA--LLQPPPETFDLFDDLLLLS 402
L +DE +GLD V+ L++ + ++ ATI+ + ++ E L D LL+L
Sbjct: 152 LILDEPFSGLDPVN----VELLKDAIFELKEEGATIIFSSHRMEHVEE---LCDRLLMLK 204
Query: 403 EGHLVYQGPRAEV 415
+G V G ++
Sbjct: 205 KGQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 59/261 (22%)
Query: 159 IFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG 218
+FK K + L +S ++ G + +GP +GK+T L L+G L + SG + G
Sbjct: 26 LFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAG 82
Query: 219 ---YKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275
+K + ++R Q +L V ++F A I DL +
Sbjct: 83 LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAA-----------IYDLPPARFK 131
Query: 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
+ + E+ LDL + + +R +S GQ+ R
Sbjct: 132 KRLDELSEL--------------------------LDL---EELLDTPVRQLSLGQRMRA 162
Query: 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLF 395
++ + LF+DE + GLD I L+ + + T+L+ + +
Sbjct: 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT-------SHYMK 215
Query: 396 D------DLLLLSEGHLVYQG 410
D +L++ +G L+Y G
Sbjct: 216 DIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 48/196 (24%)
Query: 164 RHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE 223
+ IL+D+S + G + L G +GK+TL LAG + S SG+I NG +
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKA 66
Query: 224 FHVQRTSAYISQT-DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
+++ Y+ Q D + +VRE
Sbjct: 67 KERRKSIGYVMQDVDYQLFTDSVRE----------------------------------- 91
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
E+ +K G ++ + VLK L L E +SGGQK+R+ ++
Sbjct: 92 ELLLGLKELDAGNEQ----AETVLKDLDLYALKE-----RHPLSLSGGQKQRLAIAAALL 142
Query: 343 GPRKTLFMDEISTGLD 358
+ L DE ++GLD
Sbjct: 143 SGKDLLIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 42/205 (20%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY---KLDEFH 225
+L+ VS + PG +LGP SGKSTLL LAG LD G +T +G LD+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 226 VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
V+R + +Q D H+ + TVRE A E +AA L R+ +R P+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLARPDATDEELWAA----LERVGLADWLRALPD-- 459
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
GLD TV+G R +SGG+++R+ ++
Sbjct: 460 ------------------------GLD----TVLGEGGAR-LSGGERQRLALARALLADA 490
Query: 346 KTLFMDEISTGLDSSTTFQIVKCLR 370
L +DE + LD+ T ++++ L
Sbjct: 491 PILLLDEPTEHLDAETADELLEDLL 515
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 62/225 (27%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG---YKL 221
L+IL V VVK G ++GP SGKSTLL LAG D S SG + G +KL
Sbjct: 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKL 77
Query: 222 DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFA----AYINDLNRLEKERN 277
DE D A + + GF I +L LE N
Sbjct: 78 DE--------------------------DARAALRARHVGFVFQSFHLIPNLTALE---N 108
Query: 278 IRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTT 337
+ E+ A S G K +L+ +GL + + +SGG+++RV
Sbjct: 109 VALPLELRGESSADSRAGAKA------LLEAVGL---GKRL--THYPAQLSGGEQQRVAL 157
Query: 338 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
G LF DE + LD +T +I L + T+++
Sbjct: 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVL 202
|
Length = 228 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD---- 222
+ L VS V+ G + LLG +GK+TLL + G + +SG I ++G +
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRIIFDGEDITGLPP 72
Query: 223 EFHVQRTSAYISQTDNHIPELTVRE 247
+ AY+ + P LTV E
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEE 97
|
Length = 237 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 13/189 (6%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVL--AGRKTGGY-IEGDIKISGYP----KE 906
+L VS F +T+L+G +G+GKTT + L K GY GD+ + G ++
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DS 965
F R G + Q P ++ L A +R K V + + + + V L D+
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVL---AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
++D L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1026 DTGRTVVCT 1034
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA- 911
Q+L+++S G + AL+G SG+GKTTL+ ++AG + G I+ G + S
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHG--TDVSRLHA 71
Query: 912 --RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
R G+V Q+ +TV +++ F L + + +V +L+E+ L
Sbjct: 72 RDRKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHL 129
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 130 ADRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 67/271 (24%), Positives = 104/271 (38%), Gaps = 56/271 (20%)
Query: 164 RHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK-----SGNITYNG 218
R IL D+S ++PGR+T LLG +GKSTLL ALAG L +G++T NG
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 219 ---YKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275
+D + R A + Q + RE R+ A A D
Sbjct: 71 EPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIV-LLGRYPHARRAGALTHRD------- 122
Query: 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
I L + G + +VG D + +SGG+ RV
Sbjct: 123 GEI-----------------------AWQALALAG----ATALVGRD-VTTLSGGELARV 154
Query: 336 T----------TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALL 385
+ PR L +DE + LD + +++ +R + +L A++
Sbjct: 155 QFARVLAQLWPPHDAAQPPR-YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVL-AIV 212
Query: 386 QPPPETFDLFDDLLLLSEGHLVYQGPRAEVL 416
P D + +L++G +V G A+VL
Sbjct: 213 HDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG--YPKEQSTFA 911
LL +S G L L GS+GAGKTTL+ ++AG +G+I K+ T+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
+ +V +P +T+ E+ + ++ S + E+ RL L+ L D
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLY--DIHFS---PGAVG---ITELCRLFSLEHLIDYPC 125
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
G LS+ Q++++ + ++ + +DEP LD + ++ ++ G V
Sbjct: 126 GL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 1032 VCTIHQ 1037
+ T HQ
Sbjct: 181 LLTSHQ 186
|
Length = 200 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 22/201 (10%)
Query: 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTF- 910
L +L ++ + G AL+G SG+GK+T++ +L + EG I++ G EQ
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEG---EQLYHM 67
Query: 911 -ARISGYVEQNDIHSPQVTVEESLWF-SANLRLSKEVSKN-----------QRHEFVEEV 957
R V ++ H Q+ + + F S NL K V N R E +
Sbjct: 68 PGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRA 127
Query: 958 MRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
M L+++ L D P + LS Q++R+ IA L P ++ DE TS LD V
Sbjct: 128 MELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEV 185
Query: 1018 MRTVRN-TVDTGRTVVCTIHQ 1037
+ +R + T++ H+
Sbjct: 186 LNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 29/183 (15%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L NVS G + +L G +GAGK+TLM VL+G G EG+I G + S
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD-- 78
Query: 915 GYVEQND---IHS-----PQVTVEESLWFSANLRLSKEVSKNQRHEF------VEEVMRL 960
E+ IH +++V E N+ L E++ ++ ++++
Sbjct: 79 --TERAGIAIIHQELALVKELSVLE------NIFLGNEITPGGIMDYDAMYLRAQKLLAQ 130
Query: 961 VELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
++LD VG G Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 131 LKLDINPATPVGNLGLG-----QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 1021 VRN 1023
+R+
Sbjct: 186 IRD 188
|
Length = 506 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-08
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 41/207 (19%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDI-- 922
G + L+G SG GKTT++ ++AG + EG I I G E T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 923 --HS----PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976
S P +++ E++ + L++ V K +R + V+E + LV+L D V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1031
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1032 VCTIHQPSIDIFEAF---DELLLMKRG 1055
+ H S EAF D +++M +G
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 26/169 (15%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYPKEQST- 909
+ N+S PG LVG SG+GK+T L+ ++ + G+I G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 910 -----FARISGYVEQ--NDIHSPQVTVEESLWFSANLRL-SKEVSKNQRHEFVEEVMRLV 961
V Q N +P++ V + + LR+ +S QR + V VM V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQII--EEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
LD + +P + S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 413 GLDP--ETRHRYP--AEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 30/236 (12%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD------IKIS 901
P+ K L+++S G TAL+G +G+GK+T+ + G + D I +
Sbjct: 16 PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTI-----SKLINGLLLPDDNPNSKITVD 70
Query: 902 GYPKEQSTFARIS---GYVEQN-DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEV 957
G T I G V QN D TV + + F R V + + + V +V
Sbjct: 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDV 127
Query: 958 MRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
+ V + D+ + LS Q++R+ IA L P II +DE TS LD +
Sbjct: 128 LADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI 182
Query: 1018 MRTVRN-TVDTGRTVVCTIHQPSIDIFEA--FDELLLMKRGGRVIYGGKLGVHSKT 1070
++ +R TV+ H DI EA D++L++ G + G + + SK
Sbjct: 183 LKLIRKLKKKNNLTVISITH----DIDEANMADQVLVLDDGKLLAQGSPVEIFSKV 234
|
Length = 282 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 57/241 (23%)
Query: 179 PGRMTLLLGPPASGKSTLLLALAGKLDSSLKK--SGNITYNGYKLDEFHV-------QRT 229
+T + G +GKSTLL +AG L+K G I NG L + QR
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG-----LEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76
Query: 230 SAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMK 289
+ Q P L VRE F + + +E I
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGLKRKR---------------NREDRISV--------- 112
Query: 290 ASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLF 349
D +L +LGLD + N +SGG+K+RV + + L
Sbjct: 113 -------------DELLDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPELLL 154
Query: 350 MDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQ 409
+DE + LD + Q++ L+ ++ ++ + E L D ++++ +G L Y
Sbjct: 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIF-VTHDLSEAEYLADRIVVMEDGRLQYI 213
Query: 410 G 410
G
Sbjct: 214 G 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 59/275 (21%), Positives = 102/275 (37%), Gaps = 63/275 (22%)
Query: 154 LTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAG--KLDSSLKKS 211
L L ++ +H L D+S + G +T L+GP GKSTLL L L
Sbjct: 3 LRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 212 GNITYNG---YKLDEF--HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYI 266
G + +G Y LD ++R + Q N P ++ + + R G
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHG--------- 109
Query: 267 NDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG 326
I+ E+D ++ + L+ L + V G
Sbjct: 110 -----------IKLKEELDERVEEA--------------LRKAALW---DEVKDRLHALG 141
Query: 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQ 386
+SGGQ++R+ + + L +DE ++ LD +T +I + + + TI++
Sbjct: 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY--TIVIV--- 196
Query: 387 PPPETFDL------FDDLLLLSEGHLVYQGPRAEV 415
T ++ D L G LV GP ++
Sbjct: 197 ----THNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 52/188 (27%), Positives = 76/188 (40%), Gaps = 40/188 (21%)
Query: 844 SQGI--PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTL--MDVLAGRKTGG--YIEGD 897
+G+ PE+ ++ L VS G A+VG SG GK+TL + + TGG Y +G
Sbjct: 18 KRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG- 76
Query: 898 IKISGYPKEQSTFARIS-GYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFV 954
+ E R V QN S P+ V + L L ++ +S +R E
Sbjct: 77 QDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKA 134
Query: 955 EEVMRLVELDSLRDALVGFPGSSGLSTE------------QRKRLTIAVELVANPSIIFM 1002
+M V GL E QR+R+ IA L+ +P ++
Sbjct: 135 LAMMAKV----------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVA 178
Query: 1003 DEPTSGLD 1010
DEP S LD
Sbjct: 179 DEPVSALD 186
|
Length = 327 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 41/241 (17%)
Query: 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKEQST 909
L+ L NVS + G A++G +G+GKTT ++ L G IE K K +
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE---KNKKK 76
Query: 910 FARISGYVEQNDIHSPQV---------------------------TVEESLWFSANLRLS 942
+E+ I + T+E+ + F +S
Sbjct: 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP---VS 133
Query: 943 KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFM 1002
VSK + + + + LV LD L P LS Q++R+ +A L P +
Sbjct: 134 MGVSKEEAKKRAAKYIELVGLD--ESYLQRSP--FELSGGQKRRVALAGILAMEPDFLVF 189
Query: 1003 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
DEPT+GLD + ++ N G+T++ H +D + + + + G++I G
Sbjct: 190 DEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH--DLDNVLEWTKRTIFFKDGKIIKDG 247
Query: 1063 K 1063
Sbjct: 248 D 248
|
Length = 305 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 25/192 (13%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQ 907
K+Q L VS + G + L+G++GAGKTTL+ L G R T G I D K I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVM----RLVEL 963
++ E + S ++TVEE+L ++Q E ++ V RL E
Sbjct: 77 IMREAVAIVPEGRRVFS-RMTVEENLAMGGFF-----AERDQFQERIKWVYELFPRLHER 130
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
R + +S +++ L I L++ P ++ +DEP+ GL A I+++ + +
Sbjct: 131 RIQR--------AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFD 178
Query: 1024 TVDTGRTVVCTI 1035
T++ R TI
Sbjct: 179 TIEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK---TGGYIEGDIKISG---YPKE 906
Q L++++ +TAL+G SG GK+T + L + IEG++ + G Y K+
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77
Query: 907 QSTFA--RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL- 963
+ G V Q P +++ +++ + + K+ K + + VE ++ L
Sbjct: 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKD--KKELDKIVEWALKKAALW 134
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
D ++D L + LS Q++RL IA + P +I MDEPTS LD
Sbjct: 135 DEVKDDLK--KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 24/229 (10%)
Query: 845 QGIP-EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKI 900
+G P EKK L NV+ G L+G +G+GK+TL+ L G +G I + I
Sbjct: 14 EGTPFEKKA--LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI 71
Query: 901 SGYPKEQSTFARISGYVEQNDIHSPQV---TVEESLWFS-ANLRLSKEVSKNQRHEFVEE 956
+ + S + G V Q + Q+ T+E+ + F NL LS+E +N+ V+
Sbjct: 72 TDKKVKLSDIRKKVGLVFQYPEY--QLFEETIEKDIAFGPINLGLSEEEIENR----VKR 125
Query: 957 VMRLVELD--SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
M +V LD +D LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 126 AMNIVGLDYEDYKDK-----SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
++ ++ + + D+ + D +++M + G+ G
Sbjct: 181 DEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK-GKCELQGT 228
|
Length = 287 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYP 904
+L NV+ +TAL+G SG GK+T + D++ G + G+I D I
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76
Query: 905 KEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL- 963
+ + G V Q P+ + + LR+ E ++ E VEE ++ L
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAY---GLRIHGEDDEDFIEERVEESLKAAALW 133
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
D ++D L + GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 134 DEVKDKLD--KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 72/277 (25%), Positives = 118/277 (42%), Gaps = 45/277 (16%)
Query: 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDV 884
+ + NV+Y QA G P + + L +V+ G TA +G +G+GK+T+M +
Sbjct: 1 MGINLQNVSYTY---QA----GTPFEG-RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQL 52
Query: 885 LAGRKT---GGYIEGDIKISGYP--KEQSTFARISGYVEQNDIHSPQV---TVEESLWFS 936
L G G D I+ K+ + G V Q Q+ TV + + F
Sbjct: 53 LNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQ--FPESQLFEETVLKDVAFG 110
Query: 937 -ANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSSGLSTEQRKRLTIAVELV 994
N +S+E + E + LV + SL + LS Q +R+ IA L
Sbjct: 111 PQNFGVSQE----EAEALAREKLALVGISESLFEK-----NPFELSGGQMRRVAIAGILA 161
Query: 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054
P I+ +DEPT+GLD + +M + +G T+V H D+ D + ++++
Sbjct: 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK 220
Query: 1055 GGRVIYGGKLGVHSKTMIDYFQALD-------GIPSI 1084
G+++ GK D FQ +D G+P I
Sbjct: 221 -GKLVLSGK-------PKDIFQDVDFLEEKQLGVPKI 249
|
Length = 280 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 17/151 (11%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR--ISGYVEQND 921
G A++G SGAGK+TL++++AG T G + ++G + +R +S ++N+
Sbjct: 24 RGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQENN 81
Query: 922 IHSPQVTVEE--SLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGL 979
+ +TV + L + L+L+ QR + + + R + ++ L L PG L
Sbjct: 82 LF-SHLTVAQNIGLGLNPGLKLNAA----QREK-LHAIARQMGIEDLLARL---PGQ--L 130
Query: 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
S QR+R+ +A LV I+ +DEP S LD
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 24/204 (11%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVL-------AGRKTGGYIEGDIKISG 902
+L +L NVS + G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 19 VRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQ 78
Query: 903 YPKEQSTFARIS--GYVEQNDIHSPQVT----VEESLWFSANLRLSKEVSKNQRHEFVEE 956
+ R GYV Q P+V+ V E L L + V + E
Sbjct: 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPL-------LERGVPREAARARARE 131
Query: 957 VMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
++ + + + L P ++ S +++R+ IA +A+ I+ +DEPT+ LDA +
Sbjct: 132 LLARLNIP---ERLWHLPPAT-FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPSI 1040
V+ + G ++ H +
Sbjct: 188 VVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 867 LTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKEQSTFARISGYVEQNDIH 923
LT L+G SG GKTT++ ++AG +T G + I+ P E R V Q+
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN----RHVNTVFQSYAL 97
Query: 924 SPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983
P +TV E++ F LR+ K + V E +R+V+L+ LS Q
Sbjct: 98 FPHMTVFENVAFG--LRMQK-TPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQ 149
Query: 984 RKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
++R+ IA +V P ++ +DE S LD +
Sbjct: 150 QQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 26/198 (13%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE----GDIKISGY----- 903
Q L +++ G L+G SGAGK++L+ VL +E G + I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFS 69
Query: 904 ----PKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
K R G V Q P +TV+++L A R+ +SK+Q E+++
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNL-IEAPCRVLG-LSKDQALARAEKLLE 127
Query: 960 LVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
+ L D FP LS Q++R+ IA L+ P ++ DEPT+ LD A ++
Sbjct: 128 RLRLKPYADR---FPLH--LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 1020 TVRNTVDTGRTVVCTIHQ 1037
+R +TG T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 32/160 (20%)
Query: 863 SPGV-LTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY-----------PKEQSTF 910
P +TAL G SG+GKT+L++++AG EG I+++G P E+
Sbjct: 21 LPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEK--- 75
Query: 911 ARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
R GYV Q+ P TV +L + ++++ L+ ++ L L
Sbjct: 76 -RRIGYVFQDARLFPHYTVRGNLRYGM---------WKSMRAQFDQLVALLGIEHL---L 122
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+PG+ LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 123 DRYPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 33/206 (16%)
Query: 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVL-------AGR----------KTGGYI 894
++L VS + G + +++GSSG+GK+T + + AG K
Sbjct: 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDK-- 76
Query: 895 EGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFV 954
+G +K + + Q R+ G V Q+ +TV E++ + V + E +
Sbjct: 77 DGQLKPADKRQLQRLRTRL-GMVFQHFNLWSHMTVLENV-----IEAPVHVLGVSKAEAI 130
Query: 955 EEVMRL---VELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
E + V + DA LS Q++R+ IA L P ++ DEPTS LD
Sbjct: 131 ERAEKYLAKVGIAEKADAYPAH-----LSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185
Query: 1012 RAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
V++ +++ + GRT+V H+
Sbjct: 186 ELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA- 911
++L V+ +TAL+G SG+GK+TL+ V R Y E + Y Q F
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 912 ------RISGYVEQNDIHSPQVTVEESLWFSANL-RLSKEVSKNQRHEFVEEVMRLVEL- 963
R V Q P +++ E++ L RL K SK + E V + +L
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK--SKKELQERVRWALEKAQLW 133
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
D ++D L P LS Q++RL IA L P ++ DEPT+ LD A
Sbjct: 134 DEVKDRL-DAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
|
Length = 250 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 39/209 (18%)
Query: 817 GMILPFQPLAMTFHNVNYYVDMPQAMR--SQGIPEKKLQLLSNVSGVFSPGVLTALVGSS 874
++ P + N+N+Y A++ + I + ++ TA +G S
Sbjct: 4 MSMVATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQV---------------TAFIGPS 48
Query: 875 GAGKTTLMDVLAGRKTGGY----IEGDIKISGY----PKEQSTF--ARISGYVEQNDIHS 924
G GK+TL+ R Y EG+I + G PK+ A++ G V Q
Sbjct: 49 GCGKSTLLRTF-NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKV-GMVFQKPTPF 106
Query: 925 PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFPGSSG--LST 981
P +++ +++ F +RL +++S+ + E VE + L + ++D L SG LS
Sbjct: 107 P-MSIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAALWNEVKDKL----HQSGYSLSG 159
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
Q++RL IA + P ++ +DEP S LD
Sbjct: 160 GQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 4e-08
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
T+L+D+S ++ G + +LGP +GKSTLL LAG L S SG I +G L +
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 228 ---RTSAYISQ 235
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQP 387
SGGQ++RV ++ L +DE ++GLD ++ ++++ LR + T+++
Sbjct: 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHD- 139
Query: 388 PPETFDLFDDLLLLSEGH 405
P D +++L +G
Sbjct: 140 PELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 5e-08
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGY 903
K Q+L N++ F +TA++G SG GK+TL+ D+++G + G + D +
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS 75
Query: 904 PK-EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE 962
P + + G V Q P+ ++ +++ F R+ ++++ E VE+ +R
Sbjct: 76 PNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGP--RMLGTTAQSRLDEVVEKSLRQAA 132
Query: 963 L-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L D ++D L LS Q++RL IA L P +I MDEP S LD
Sbjct: 133 LWDEVKDNL--HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 6e-08
Identities = 66/287 (22%), Positives = 111/287 (38%), Gaps = 56/287 (19%)
Query: 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG---YKL 221
+ ++DV+ ++ G +L+GP SGK+T L + ++ + SG I +G L
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDL 68
Query: 222 DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
D ++R Y+ Q P LTV E A + L +KER
Sbjct: 69 DPVELRRKIGYVIQQIGLFPHLTVAENI--------------ATVPKLLGWDKER----- 109
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
I D +L ++GLD + + +SGGQ++RV +
Sbjct: 110 --IKK--------------RADELLDLVGLD---PSEYADRYPHELSGGQQQRVGVARAL 150
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401
L MDE LD T Q+ + ++ ++ TI+ + E L D + ++
Sbjct: 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVF-VTHDIDEALKLADRIAVM 209
Query: 402 SEGHLVYQGPRAEVL-----EFFESL------GFQLPPRKGVADFLQ 437
G +V E+L +F E G +L VAD ++
Sbjct: 210 DAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVR 256
|
Length = 309 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 35/211 (16%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 912
++L V+ G + AL+G +G+GK+TL + G EG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
DI + EE + L+ Q + V + + LR G
Sbjct: 64 -------EDI--TDLPPEER--ARLGIFLAF-----QYPPEIPGV-KNADF--LRYVNEG 104
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
F G ++KR I L+ P + +DEP SGLD A +V + + G++V+
Sbjct: 105 FSGG------EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVL 158
Query: 1033 CTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
H + + D + ++ G V G K
Sbjct: 159 IITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 6e-08
Identities = 72/253 (28%), Positives = 111/253 (43%), Gaps = 51/253 (20%)
Query: 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVL 885
A+ F ++ + + + SQG+ +VS G A+VG +GAGKTTL+++L
Sbjct: 334 AVEFRHITF--EFANS--SQGV--------FDVSFEAKAGQTVAIVGPTGAGKTTLINLL 381
Query: 886 --AGRKTGGYIEGD-IKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLS 942
T G I D I I+ +E + + V Q D ++ E N+RL
Sbjct: 382 QRVYDPTVGQILIDGIDINTVTRE--SLRKSIATVFQ-DAGLFNRSIRE------NIRLG 432
Query: 943 KEVSKNQRHEFVEEVMRLVELDSLRD----------ALVGFPGSSGLSTEQRKRLTIAVE 992
+E + + EEV + + D LVG G+ LS +R+RL IA
Sbjct: 433 REGATD------EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR-LSGGERQRLAIARA 485
Query: 993 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT---GRTVVCTIHQPSIDIFEAFDEL 1049
++ N I+ +DE TS LD A V+N +D RT H+ S + A +L
Sbjct: 486 ILKNAPILVLDEATSALDVETEA----RVKNAIDALRKNRTTFIIAHRLST-VRNA--DL 538
Query: 1050 LLMKRGGRVIYGG 1062
+L GR+I G
Sbjct: 539 VLFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 6e-08
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 18/227 (7%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISG---YP 904
+ + L+N S F +T ++G++G+GK+T++ + G +TG I GD I
Sbjct: 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82
Query: 905 KEQSTFARISGYVEQ-NDIHSPQVTVEESLWFS-ANLRLSKEVSKNQRHEFVEEVMRLVE 962
KE + G V Q + Q T+E+ + F NL +K+ + ++ V E+++LV+
Sbjct: 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ----EAYKKVPELLKLVQ 138
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-V 1021
L D + P LS Q++R+ +A + + + + +DEPT GLD + +
Sbjct: 139 LP--EDYVKRSPFE--LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFE 194
Query: 1022 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHS 1068
R + + ++ H + DE+++M G + G + S
Sbjct: 195 RLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIFS 240
|
Length = 289 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 49/221 (22%), Positives = 83/221 (37%), Gaps = 50/221 (22%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE----- 223
+L ++ + G + LLG +GKSTLLL L G L +SG + +G LD
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDGEPLDYSRKGL 63
Query: 224 FHVQRTSAYISQT-DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
++ + Q D+ + V + F G +E E ER +R
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEA-----------EVERRVR--- 109
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
+A + G ++ +SGG+KKRV +
Sbjct: 110 --EALTAVGASGLRERPTHC------------------------LSGGEKKRVAIAGAVA 143
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
L +DE + GLD + Q++ LR + T++++
Sbjct: 144 MRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 43/197 (21%), Positives = 67/197 (34%), Gaps = 48/197 (24%)
Query: 164 RHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE 223
R T+ +D+S + G + GP +GK+TLL LAG L +G + + G +
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQN 68
Query: 224 F--HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
+ Y+ ELT E F WQ
Sbjct: 69 VRESYHQALLYLGHQPGIKTELTALENLHF---WQ------------------------- 100
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
G ++ + L +GL + VG +S GQ++RV +
Sbjct: 101 ----------RFHGSGNAATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLW 145
Query: 342 VGPRKTLFMDEISTGLD 358
+ P +DE T LD
Sbjct: 146 LSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-08
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 908
+ +L ++ PG + ALVG SG+GK+T+ +L + TGG + + G P Q
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ- 547
Query: 909 TFARISGYVEQNDIHSPQVTV-EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ + +H V +E + FS ++R + + EE+M + +
Sbjct: 548 --------YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD--EEIMAAAKAANAH 597
Query: 968 DALVGFP-------GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
D ++ FP G G LS Q++R+ IA LV P ++ +DE TS LDA
Sbjct: 598 DFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CE 653
Query: 1019 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMID 1073
+ ++ + RTV+ H+ S E D++L++K+G V ++G H + M D
Sbjct: 654 QLLQESRSRASRTVLLIAHRLS--TVERADQILVLKKGSVV----EMGTHKQLMED 703
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 49/215 (22%), Positives = 81/215 (37%), Gaps = 45/215 (20%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL--DEFHVQ 227
+ VS V+ G + LLGP +GK+T + L L + SG T G+ + + V+
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 228 RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287
R + Q + ELT E AR G
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYG------------------------------ 102
Query: 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKT 347
V G + D +L +GL + +++ SGG ++R+ +V +
Sbjct: 103 -----VPGAERRERIDELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
Query: 348 LFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
LF+DE + GLD T + + + + TIL+
Sbjct: 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-08
Identities = 61/263 (23%), Positives = 106/263 (40%), Gaps = 66/263 (25%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
ILND+S + G++T L+GP GKSTLL A L +SG + + +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 228 RTSAYISQTDNH--IPE-LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+ + ++ H PE +TVRE + G + +++ RL E N R +
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY---------GRSPWLSLWGRLSAEDNAR----V 119
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+ M+ + + + + + +SGGQ++R ++
Sbjct: 120 NQAMEQTRI-----------------------NHLADRRLTDLSGGQRQRAFLAMVLAQD 156
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETF-----DL----- 394
+ +DE +T LD + HQ++ LM L +T DL
Sbjct: 157 TPVVLLDEPTTYLDIN-------------HQVELMRLMRELNTQGKTVVTVLHDLNQASR 203
Query: 395 -FDDLLLLSEGHLVYQGPRAEVL 416
D L++L+ GH++ QG EV+
Sbjct: 204 YCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 9e-08
Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 55/271 (20%)
Query: 803 EINTTSAPESGKKKGMILPFQPL--AMTFHNVNYYVDMPQAMRSQGIPEKKLQL-LSNVS 859
AP K LP PL + F VN+ P + Q L ++
Sbjct: 317 AEPDIKAPAHPKT----LP-VPLRGEIEFEQVNFAY-----------PARPDQPALDGLN 360
Query: 860 GVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQ 919
PG ALVG SGAGK+TL +L + G I + G Q ++
Sbjct: 361 LTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQ---------LDP 409
Query: 920 NDIHSPQVTV-EESLWFSA----NLRLSK------EV----SKNQRHEFVEEVMRLVELD 964
++ + V ++ + F+A N+R + EV HEF+ L
Sbjct: 410 AELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISA------LP 463
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
D +G G + LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T
Sbjct: 464 EGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ET 521
Query: 1025 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ GRT + H+ + + +A D +++M +G
Sbjct: 522 LMKGRTTLIIAHRLAT-VLKA-DRIVVMDQG 550
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 43/145 (29%), Positives = 56/145 (38%), Gaps = 47/145 (32%)
Query: 869 ALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQ 926
LVG SG GK+TL ++ G T G I E DI
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSGEI---------------------LFEGKDIT--- 78
Query: 927 VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKR 986
++SK +R E V E++ V L + L +P LS QR+R
Sbjct: 79 -----------------KLSKEERRERVLELLEKVGLPE--EFLYRYPHE--LSGGQRQR 117
Query: 987 LTIAVELVANPSIIFMDEPTSGLDA 1011
+ IA L NP +I DEP S LD
Sbjct: 118 IGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 52/232 (22%)
Query: 159 IFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG 218
I K K IL+D++ ++ G+M ++G SGKSTLL + G L+ SG + NG
Sbjct: 4 ISK-KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNG 59
Query: 219 YKLDEFHVQRTS-------AYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNR 271
+ + ++ S Y+ Q I TV E D Y L++
Sbjct: 60 QETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG----------LKYKK-LSK 108
Query: 272 LEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQ 331
EK + L+ +GL+L + I +SGG+
Sbjct: 109 KEKREKKK------------------------EALEKVGLNLKLKQ-----KIYELSGGE 139
Query: 332 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
++RV I+ P + DE + LD +++ L + TI++
Sbjct: 140 QQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIV 190
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 51/238 (21%), Positives = 92/238 (38%), Gaps = 51/238 (21%)
Query: 177 VKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYK-LDEFHVQRTSAYISQ 235
V G + ++GP +GKSTLL +AG ++ + SG+I N QR + + Q
Sbjct: 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 236 TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGG 295
+N LTVR+ G + G LN ++E+ + A VG
Sbjct: 78 ENNLFAHLTVRQNIGL-----GLHPGL-----KLNAEQQEKVVD---------AAQQVG- 117
Query: 296 KKHSVSTDYVLKVLGLDLCSETVVGNDMIR---GVSGGQKKRVTTGEMIVGPRKTLFMDE 352
+ + + R +SGGQ++RV +V P L +DE
Sbjct: 118 -----------------------IADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154
Query: 353 ISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQG 410
+ LD +++ ++ + T+LM + + + ++S+G +
Sbjct: 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHH-LSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKT----TLMDVLAGRKTGGYIEGDIKISG-----Y 903
+ + +S G ALVG SG+GK+ +++ +L + G I G
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAA 82
Query: 904 PKEQSTFARIS--GYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
+ Q R + G + Q + S P T+ + L + LRL + +S+ E++
Sbjct: 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL--AEVLRLHRGLSRAAARARALELLE 140
Query: 960 LVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
LV + L +P LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 141 LVGIPEPEKRLDAYPHE--LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 33/215 (15%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTL-------MDVLAGRKTGGYIEGDIKISGYPKE 906
+L +V PG + G +G+GK++L +D+ G+ I+G I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDG-IDISKLPL- 90
Query: 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
+ +R+S + +++ + FS ++R + + + + E + + +L ++
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 967 RDALVG------FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
+L G G S QR+ +A V SI+ MDE T+ +D I+ +
Sbjct: 139 VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKV 198
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
V T RTVV H+ S I +A D +L++ RG
Sbjct: 199 VM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 33/155 (21%)
Query: 868 TALVGSSGAGKTTLMDVLAG--RKTGGYI----------EGDIKISGYPKEQSTFARISG 915
TA+ G SGAGKT+L++ ++G R G I E I + P E+ RI G
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL---PPEKR---RI-G 79
Query: 916 YVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG 975
YV Q+ P V NLR ++K+ +F ++V L + L +PG
Sbjct: 80 YVFQDARLFPHYKVR------GNLRYG--MAKSMVAQF----DKIVALLGIEPLLDRYPG 127
Query: 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
S LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 S--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 61/266 (22%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
IL+D+S +K T ++G SGKSTL L G + +SG I NG+ L +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA---RSGEILLNGFSLKDIDRHT 545
Query: 229 TSAYISQTDNHIPELTVRETFDFAAR-----WQGANEGFAAYINDLNRLEKERNIRPS-- 281
+I N++P+ E + F+ GA E + ++
Sbjct: 546 LRQFI----NYLPQ----EPYIFSGSILENLLLGAKEN----------VSQDEIWAACEI 587
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
EI ++ +G +L E +SGGQK+R+ +
Sbjct: 588 AEIKDDIENMPLG--------------YQTELSEEGS-------SISGGQKQRIALARAL 626
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMAL--LQPPPETFDLFDDLL 399
+ K L +DE ++ LD+ T +IV N ++ D TI+ L ++ D ++
Sbjct: 627 LTDSKVLILDESTSNLDTITEKKIVN---NLLNLQDKTIIFVAHRLSVAKQS----DKII 679
Query: 400 LLSEGHLVYQGPRAEVLE---FFESL 422
+L G ++ QG E+L+ F+ SL
Sbjct: 680 VLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 25/218 (11%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPK 905
P K++ L N++ G ALVG SG+GK+T+ ++L T Y EG+I + G+
Sbjct: 352 PGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDL 407
Query: 906 EQSTFARIS---GYVEQNDIHSPQVTVEESLWFSANLRLSKE-VSKNQR----HEFVEEV 957
T A + V QN +H T+ ++ ++ + S+E + + R +F+ +
Sbjct: 408 RDYTLASLRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK- 465
Query: 958 MRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
+D+ D ++G G LS QR+R+ IA L+ + I+ +DE TS LD + +
Sbjct: 466 -----MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ + + RT + H+ S E DE+L+++ G
Sbjct: 520 QAAL-DELQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 62/260 (23%)
Query: 824 PLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMD 883
+++T +NV++ P++ +L +S G AL+G +G GK+TL+
Sbjct: 336 QVSLTLNNVSF-----------TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ 384
Query: 884 VLAGRKTGGY--IEGDIKISGYP----KEQSTFARISGYVEQNDIHSPQVTVEESLWFSA 937
+L T + +G+I ++G P E + IS V Q +H FSA
Sbjct: 385 LL----TRAWDPQQGEILLNGQPIADYSEAALRQAIS-VVSQR-VHL----------FSA 428
Query: 938 ----NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST------------ 981
NL L+ N E + EV++ V L+ L + GL+
Sbjct: 429 TLRDNLLLAAP---NASDEALIEVLQQVGLEKLLE------DDKGLNAWLGEGGRQLSGG 479
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1041
EQR RL IA L+ + ++ +DEPT GLDA ++ + +TV+ H+ +
Sbjct: 480 EQR-RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHR--LT 535
Query: 1042 IFEAFDELLLMKRGGRVIYG 1061
E FD + +M G + G
Sbjct: 536 GLEQFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 11/210 (5%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS----TF 910
L + PG L G +GAGK+TLM +L+G G +G+I SG P + S T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 911 ARISGYVEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDA 969
+ Q P+++V E+++ + L ++ N + + ++R ++LD+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029
G G +Q + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 RP--VGDYGGGQQQ--LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL--KAH 190
Query: 1030 TVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
V C ++ +A + + + R G+ +
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
T+LNDVS ++ G + LLGP SGKSTLL +AG L+ SG+I +G L + +
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDLEDE 70
Query: 228 -----RTSAYISQTDNHIPELTVRE 247
R + Q P LTV E
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLE 95
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 59/267 (22%), Positives = 90/267 (33%), Gaps = 71/267 (26%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
T+L V V+ G + ++GP SGKSTLL + G L SG + +G
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGED----- 63
Query: 226 VQRTSAYISQTDNHIPELTVRETFDFAARW----QGANEGFAAYINDLNRLE------KE 275
I L+ E + R Q A + L E +E
Sbjct: 64 --------------ISGLSEAELYRLRRRMGMLFQ-----SGALFDSLTVFENVAFPLRE 104
Query: 276 RNIRPSPEID--AFMKASSVG--GKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQ 331
EI K +VG G + +SGG
Sbjct: 105 HTRLSEEEIREIVLEKLEAVGLRGAEDL-----------------------YPAELSGGM 141
Query: 332 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA---LLQPP 388
KKRV + + L DE + GLD + I +R+ ++ T +M L
Sbjct: 142 KKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL---- 197
Query: 389 PETFDLFDDLLLLSEGHLVYQGPRAEV 415
F + D + +L +G +V +G E+
Sbjct: 198 DTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 2e-07
Identities = 54/276 (19%), Positives = 100/276 (36%), Gaps = 56/276 (20%)
Query: 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF 224
+ T+L+D+S ++ G + L+G GK+TLL A+AG + ++ +G I D
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIAD--RDLT 72
Query: 225 HV---QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
H +R A + Q P L V + F R Q + D+ +
Sbjct: 73 HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKA------DIAERVAD------ 120
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
LK++GL + +SGG ++R+ I
Sbjct: 121 -----------------------ALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAI 152
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401
L +DE + LD++ + + + ++ ++ + + L D ++
Sbjct: 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIM 212
Query: 402 SEGHLVYQG-PRAEVLEFFESLGFQLPPRKGVADFL 436
+G L G P+A + P A+FL
Sbjct: 213 KDGRLAAHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 20/187 (10%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGR------KTGGYIEGDIKISGY--PKEQSTFARISG 915
G + LVG +G GK+T + +LAG+ K + D + + + Q+ F ++
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 916 YVEQNDIHSPQVTVEESLWFSANLR--LSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
+ I PQ + L K K++R + +E++ +EL + D +
Sbjct: 85 G-DVKVIVKPQYVDLIPKAVKGKVGELLKK---KDERGKL-DELVDQLELRHVLDRNI-- 137
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
LS + +R+ IA L + F DEP+S LD + R +R + V+
Sbjct: 138 ---DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194
Query: 1034 TIHQPSI 1040
H ++
Sbjct: 195 VEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-07
Identities = 58/262 (22%), Positives = 102/262 (38%), Gaps = 51/262 (19%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDI--KISGYPKEQ 907
++L N+S G + ++G SGAGK+ LM VL G G I ++ K
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK-- 68
Query: 908 STFARISGYVE-QNDIHSPQVTVEESLW-FSANL-RLSKEVSKN---------QRHEFVE 955
GYVE + + P +L + LS ++ + QR +
Sbjct: 69 ------CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALY 122
Query: 956 EVMRLVE--LDSLRDALVGFPGSSG-----------------------LSTEQRKRLTIA 990
+++ L++L + G+ G LS +++R+ +A
Sbjct: 123 GDDTVLDNVLEALEEI--GYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180
Query: 991 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDEL 1049
+L P + DEPT LD + A +V + V +G ++V T H P + I + D+
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKA 239
Query: 1050 LLMKRGGRVIYGGKLGVHSKTM 1071
+ ++ G G V + M
Sbjct: 240 IWLENGEIKEEGTPDEVVAVFM 261
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 2e-07
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1038
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 1039 SIDIFEAFDELLLMKRGGRVI 1059
++FE D + ++ R GRV+
Sbjct: 143 D-EVFEIADRVTVL-RDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 38/219 (17%)
Query: 831 NVNYYVDMPQAMR--SQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM---DVL 885
++N + QA+ S IPE ++ TA++G SG GK+T + + +
Sbjct: 44 DLNVFYGDEQALDDVSMDIPENQV---------------TAMIGPSGCGKSTFLRCINRM 88
Query: 886 AGRKTGGYIEGDIKISG---YPKEQSTFA--RISGYVEQNDIHSPQVTVEESLWFSANLR 940
+EG++ G Y + A R G V Q P+ + + L+
Sbjct: 89 NDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAY---GLK 145
Query: 941 LSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFPGSSG--LSTEQRKRLTIAVELVANP 997
+ E VEE +R L D ++D L SSG LS Q++RL IA + +P
Sbjct: 146 IQGYDGDID--ERVEESLRRAALWDEVKDQL----DSSGLDLSGGQQQRLCIARAIAPDP 199
Query: 998 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
+I MDEP S LD A + + + + TVV H
Sbjct: 200 EVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 39/210 (18%)
Query: 827 MTFHNVNYYVDMPQAMR--SQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDV 884
++ +++ Y A++ S IPEK + TAL+G SG GK+T +
Sbjct: 46 LSVEDLDVYYGDDHALKGVSMDIPEKSV---------------TALIGPSGCGKSTFLRC 90
Query: 885 LA---GRKTGGYIEGDIKISGYPKEQS-----TFARISGYVEQNDIHSPQVTVEESLWFS 936
L R I+G +++ G Q + G V Q+ P+ ++ E++ +
Sbjct: 91 LNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYG 149
Query: 937 AN----------LRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFPGSSGLSTEQRK 985
RL K+ E VE +R L D + D L + GLS Q++
Sbjct: 150 PRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD--NALGLSGGQQQ 207
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
RL IA L +P +I MDEP S LD A +
Sbjct: 208 RLCIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 869 ALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISG-YVEQNDIHSP 925
A++G +G+GK+TL +LAG T G I + + RI + + N +P
Sbjct: 43 AIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102
Query: 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985
++ + + L LRL+ ++ QR + + E +R+V L L D +P L+ Q++
Sbjct: 103 RLRIGQIL--DFPLRLNTDLEPEQRRKQIFETLRMVGL--LPDHANYYPHM--LAPGQKQ 156
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDA 1011
R+ +A L+ P II DE + LD
Sbjct: 157 RVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 63/211 (29%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
L D++ V G + ++GP SGKS+LL AL G+L+ K SG+++ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 229 TSAYISQTDNHIPEL---TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
+ AY+SQ P + T+RE F + ++ER +
Sbjct: 67 SIAYVSQE----PWIQNGTIRENILFGKPF-----------------DEER-------YE 98
Query: 286 AFMKASSVGGKKHSVSTDYVLKVL-GLDLCSETVVGNDMIRGV--SGGQKKRVTTGEMIV 342
+KA ++ D L++L DL T +G +G+ SGGQK+R++ +
Sbjct: 99 KVIKAC-------ALEPD--LEILPDGDL---TEIG---EKGINLSGGQKQRISLARAVY 143
Query: 343 GPRKTLFMDEISTGLDSSTTFQIV-KCLRNF 372
+D+ + +D+ I C+
Sbjct: 144 SDADIYLLDDPLSAVDAHVGRHIFENCILGL 174
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 23/207 (11%)
Query: 870 LVGSSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGY---PKEQSTFARISGYVEQND 921
+VG+SGAGKTTL ++AG T G + GD + P + R G + Q
Sbjct: 315 IVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
P TV ++L + L L E+++ + M + + + L +P LS
Sbjct: 375 DLYPHRTVLDNLTEAIGLELPDELAR--MKAVITLKMVGFDEEKAEEILDKYP--DELSE 430
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTVVCTIH 1036
+R R+ +A L+ P I+ +DEPT +D I V +++ + +T + H
Sbjct: 431 GERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSILKAREEMEQTFIIVSH 486
Query: 1037 QPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ + D LM R G+++ G
Sbjct: 487 DMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGY---- 903
K + L + F+ +TAL+G SG GK+T + L G I G++ + G
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 904 PKEQSTFARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE 962
P E R G V Q P E ++ LRL+ K E VE ++
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFPFSIYENVIY---GLRLAGVKDKAVLDEAVETSLKQAA 133
Query: 963 L-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ D ++D L + LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 134 IWDEVKDHL--HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKEQSTFA 911
L++VS G +++G +G+GK+T + R G +E G I I G +
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDLLTEENVW 77
Query: 912 RIS---GYVEQN-DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
I G V QN D TVE+ + F +K + + E V E + LV + +
Sbjct: 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLE---NKGIPHEEMKERVNEALELVGMQDFK 134
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ + LS Q++R+ IA + P II +DE TS LD +++T++ D
Sbjct: 135 ER-----EPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD 189
Query: 1028 -GRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
TV+ H +D D +L+MK G
Sbjct: 190 YQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 21/197 (10%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------PKE 906
++L ++ + G + A++G +G+GK+TL V+AG +EGDI G P+E
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLS----KEVSKNQRHEFVEEVMRLVE 962
++ + Q I P V+ + L + N + E+ + E + E ++LV
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG 138
Query: 963 LDSL---RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
+D R+ GF G ++KR I + + + +DE SGLD A I+
Sbjct: 139 MDPSFLSRNVNEGFSGG------EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 1020 TVRNTVDTGRTVVCTIH 1036
+ + + +++ H
Sbjct: 193 GINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 20/156 (12%)
Query: 867 LTALVGSSGAGKTT-------LMDVLAGRKTGG---YIEGDIKISGYPKEQSTFARIS-G 915
+TA++G SG GK+T +++++ KT G Y + +I Y E+ R + G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE---LRTNVG 108
Query: 916 YVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFP 974
V Q P+ ++ +++ + + K+ K E VE+ +R + D L+D L
Sbjct: 109 MVFQKPNPFPK-SIYDNVTYGPKIHGIKD--KKTLDEIVEKSLRGAAIWDELKDRL--HD 163
Query: 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 3e-07
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 22/215 (10%)
Query: 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA 911
L LSN++ G LT +VG G GK++L+ + G +EG + S + + +F
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFE 71
Query: 912 RISGYVEQNDIHSPQ------VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV-ELD 964
+ ++ Q TVEE++ F + QR++ V + L ++D
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF-------NKQRYKAVTDACSLQPDID 124
Query: 965 SLRDALVGFPGSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-- 1020
L G G LS QR+R+ +A L N +I+F+D+P S LD + +M+
Sbjct: 125 LLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
++ D RT+V H+ + D ++ MK G
Sbjct: 185 LKFLQDDKRTLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 17/175 (9%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIH 923
G + G +GAGKTTL+ VLAG G I+I G + +R Y+
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 924 SPQVTVEESLWFSANL--RLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
++ E+L F L R +K++ + + +V L D LV LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGS--------ALAIVGLAGYEDTLV-----RQLSA 140
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 4e-07
Identities = 66/275 (24%), Positives = 108/275 (39%), Gaps = 56/275 (20%)
Query: 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF 224
T ++D+S +K G LLGP GK+TLL +AG S SG I +G D
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDG--EDIT 70
Query: 225 HV---QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
V +R + Q+ P +TV E N F K R
Sbjct: 71 DVPPEKRPIGMVFQSYALFPHMTVEE-----------NVAFGL---------KVRKKLKK 110
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
EI A ++ L+++GL+ + +SGGQ++RV +
Sbjct: 111 AEIKARVEE--------------ALELVGLE-----GFADRKPHQLSGGQQQRVALARAL 151
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401
V K L +DE + LD+ Q+ K L+ ++ T + E + D + ++
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-THDQEEALAMSDRIAVM 210
Query: 402 SEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFL 436
++G + G E+ ++ P + VADF+
Sbjct: 211 NDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 53/245 (21%)
Query: 177 VKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-----QRTSA 231
V G + +LGP +GKSTLL +AG SG I NG H +R +
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILING----VDHTASPPAERPVS 74
Query: 232 YISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKAS 291
+ Q +N LTV + G + G LN ++E+
Sbjct: 75 MLFQENNLFAHLTVAQNIGL-----GLSPGLK-----LNAEQREK--------------- 109
Query: 292 SVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMD 351
+ +GL + +SGGQ++RV +V + L +D
Sbjct: 110 ----------VEAAAAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVREQPILLLD 154
Query: 352 EISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGP 411
E + LD + +++ + + T+LM P + + D ++ L G + QG
Sbjct: 155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH-PEDAARIADRVVFLDNGRIAAQGS 213
Query: 412 RAEVL 416
E+L
Sbjct: 214 TQELL 218
|
Length = 231 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 54/227 (23%)
Query: 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG---YKL 221
H L+IL V VVK G L+G SGKSTLL LAG D S SG ++ G +++
Sbjct: 21 HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQM 77
Query: 222 DEFHVQRTS------AYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275
DE R ++ Q+ IP L E + A +G + R +
Sbjct: 78 DE--EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS----------RQSRN 125
Query: 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
+L+ LGL + + + + +SGG+++RV
Sbjct: 126 GAKA-------------------------LLEQLGL---GKRL--DHLPAQLSGGEQQRV 155
Query: 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
G LF DE + LD T +I L + + T+++
Sbjct: 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL 202
|
Length = 228 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 20/163 (12%)
Query: 867 LTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKEQSTFARIS--------G 915
+TA++G SG GK+T + L +EG +K+ G + + RI+ G
Sbjct: 35 VTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 916 YVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFP 974
V Q P +++ E++ + +R+S ++ + E VE ++ L ++D L
Sbjct: 92 MVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLN--K 146
Query: 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
+ GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 147 SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 27/178 (15%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L ++S F G + +VG SGAGK+TL+ ++ + EG I I G + T I
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDG--VDIKTIDVI 73
Query: 914 S-----GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD---S 965
G V Q H + TV++++ + L+ K V VE + +V L+ +
Sbjct: 74 DLRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKGEKNVD-------VEYYLSIVGLNKEYA 125
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
RD LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 126 TRDV-------KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 46/195 (23%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-Q 227
+L +V+ + G + L+GP GKSTLL + G L +G + N +LD Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 228 RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287
R + Q P L+V + FA
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFAL---------------------------------- 102
Query: 288 MKASSVGGKKHSVSTDYVLKVLGLD--LCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
+++ G + + L+ GLD + +SGGQ+ RV ++
Sbjct: 103 --PATLKGNARRNAANAALERSGLDGAFHQDPAT-------LSGGQRARVALLRALLAQP 153
Query: 346 KTLFMDEISTGLDSS 360
K L +DE + LD +
Sbjct: 154 KALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------PKEQS---TFARIS 914
PG + A++G +G+GK+TL LAGR+ G ++ G P++++ F
Sbjct: 26 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQ 85
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL--DSL-RDALV 971
VE + S Q ++ +L + R + + + + +EE + L+++ D L R V
Sbjct: 86 YPVEIPGV-SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNV 144
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
GF G ++KR I V P + +DE SGLD A IV V + D R+
Sbjct: 145 GFSGG------EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSF 198
Query: 1032 VCTIHQPSI 1040
+ H I
Sbjct: 199 IIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-07
Identities = 79/310 (25%), Positives = 123/310 (39%), Gaps = 90/310 (29%)
Query: 128 VVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLG 187
VV D GS +P R + +R F + L +V+ +KPG+M + G
Sbjct: 299 VVKD---GSEPVP----EGRGE---LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICG 348
Query: 188 PPASGKSTLLLALAGKLDSSLKKSGNITYNGY-----KLDEFHVQRTSAYISQTDNHIPE 242
P SGKSTLL + D S G+I ++ +LD + + A +SQT P
Sbjct: 349 PTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSW--RSRLAVVSQT----PF 399
Query: 243 L---TVRETFDFAARWQGANEGFAAYINDLNRLEKERNI---RPSP---EIDAFMKASSV 293
L TV AN NI RP EI+ + +SV
Sbjct: 400 LFSDTV------------AN-----------------NIALGRPDATQQEIEHVARLASV 430
Query: 294 GGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV--SGGQKKRVTTGEMIVGPRKTLFMD 351
H +L L +T VG RGV SGGQK+R++ ++ + L +D
Sbjct: 431 ----HD-------DILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILD 476
Query: 352 EISTGLDSSTTFQIVKCLRNFVHQMDATI----LMALLQPPPETFDLFDDLLLLSEGHLV 407
+ + +D T QI+ LR + I L AL + ++L++ GH+
Sbjct: 477 DALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEA--------SEILVMQHGHIA 528
Query: 408 YQGPRAEVLE 417
+G ++ +
Sbjct: 529 QRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 5e-07
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 25/216 (11%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L N++ V G ++G +G+GK+TL L G R G + +G + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 913 ISGYVEQNDIHSPQV-----TVEESLWFSA-NLRLSK-EVSKNQRHEFVEEVMRLVELDS 965
+ G V QN P+ TVEE L F NL L E+ K V+ + + L+
Sbjct: 78 LVGIVFQN----PETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEIGLEK 128
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
R LS Q + + +A L P + DE TS LD + V+ ++
Sbjct: 129 YR-----HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH 183
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ G+T+V H +++ D +++M RG V+ G
Sbjct: 184 EKGKTIVYITH--NLEELHDADRIIVMDRGKIVLEG 217
|
Length = 274 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-07
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 19/161 (11%)
Query: 857 NVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGD-IKISGYPKEQSTFARI 913
+VS G + AL+G+SG GK+TL+ +LAG + T G I D + +S P Q R
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RP 92
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
+ Q+ P +TVE+++ F L+ K + K + V E++ LV + F
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFG--LKQDK-LPKAEIASRVNEMLGLVHMQE-------F 142
Query: 974 PGSS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 143 AKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 56/249 (22%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ-- 227
L++VS ++ G ++G SGKSTLL LAG + SG++ +G + +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 228 -RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDA 286
R Y+ Q D + T+R+ A +D R+
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGAP----------LADD-ERI-------------- 110
Query: 287 FMKASSVGGKKHSVSTDYVLK-VLGLDLCSETVVGNDMI----RGVSGGQKKRVTTGEMI 341
++A+ + G TD+V K GLDL I RG+SGGQ++ V +
Sbjct: 111 -LRAAELAG-----VTDFVNKHPNGLDL---------QIGERGRGLSGGQRQAVALARAL 155
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401
+ L +DE ++ +D ++ ++ + LR + D T+++ +P DL D ++++
Sbjct: 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLL--GDKTLIIITHRPS--LLDLVDRIIVM 211
Query: 402 SEGHLVYQG 410
G +V G
Sbjct: 212 DSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 46/236 (19%), Positives = 72/236 (30%), Gaps = 52/236 (22%)
Query: 164 RHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE 223
R + +S + G + GP GK+TLL LAG L SG + +NG L E
Sbjct: 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAE 66
Query: 224 --FHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
R Y+ PEL+ E F A G
Sbjct: 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGG----------------------- 103
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
+ + L +GL + +S GQ++R+ +
Sbjct: 104 ----------------AQRTIEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLW 142
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL---MALLQPPPETFDL 394
+ +DE +T LD + + LR + + +L L L
Sbjct: 143 LSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVEARELRL 198
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 62/219 (28%), Positives = 89/219 (40%), Gaps = 27/219 (12%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFA 911
L +S G + LVG +GAGK+TL+ +AG G G I+ +G P E + A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELA 68
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
R Y+ Q + V + L + + EV + LD D L
Sbjct: 69 RHRAYLSQQQTPPFAMPV----FQYLTLHQPDKTRTEAVASALNEVAEALGLD---DKL- 120
Query: 972 GFPGSSG-LS-TE-QRKRLTIAVELVANPSI------IFMDEPTSGLDARAAAIVMRTVR 1022
S LS E QR RL AV L P I + +DEP + LD A + R +
Sbjct: 121 --GRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS 177
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
G VV + H + + A D + L+K+G + G
Sbjct: 178 ELCQQGIAVVMSSHDLNHTLRHA-DRVWLLKQGKLLASG 215
|
Length = 248 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 25/165 (15%)
Query: 868 TALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG---YPKEQSTF---ARIS 914
TA +G SG GK+T + D + G + + G I + G Y AR+
Sbjct: 48 TAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYDPRLDVVELRARV- 102
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLR-LSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVG 972
G V Q P+ ++ E++ + + L++ SK + E VE +R L + ++D L
Sbjct: 103 GMVFQKPNPFPK-SIYENVAYGPRIHGLAR--SKAELDEIVETSLRKAGLWEEVKDRL-H 158
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
PG+ GLS Q++RL IA + +P +I MDEP S LD A A V
Sbjct: 159 EPGT-GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 7e-07
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
+LR+ L+ +P LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 79 TLREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-- 135
Query: 1025 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057
+ G TV+ H+PS+ F D +L + G
Sbjct: 136 -ELGITVISVGHRPSLWKF--HDRVLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 29/212 (13%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI----EGDIKISGYPKEQSTF 910
L +VS G L+G +GAGK+TL+ +LAG I G + + G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 911 ARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
R+S + +P++T E+++ N RL +S+ + E ++E++ EL D
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYL--NGRL-LGLSRKEIDEKIDEIIEFSELGDFIDLP 139
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V S+ + RL A+ P I+ +DE + DA R +R + G+T
Sbjct: 140 V-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKT 194
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
V+ H PS I D L++++ G++ + G
Sbjct: 195 VILVSHDPSS-IKRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKEQST 909
Q L N++ + +TAL+G SG GK+T + + + G + EG+I + +P +
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNI 87
Query: 910 FA----------RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
+ RIS V Q P+ E + LR+ ++ E VE +R
Sbjct: 88 LSPEVDPIEVRMRIS-MVFQKPNPFPKSIFENVAY---GLRIRGVKRRSILEERVENALR 143
Query: 960 LVEL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
L D ++D L + LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 144 NAALWDEVKDRLGDL--AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 58/254 (22%), Positives = 93/254 (36%), Gaps = 60/254 (23%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG-----YKLDE 223
ILN++S V+ G + GP GKSTLL +A L S SG + + G K +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEGEDVSTLKPEA 74
Query: 224 FHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGF--AAYINDLNRLEKERNIRPS 281
+ Q +Y +QT + TV + F WQ N AA ++ L R +I
Sbjct: 75 YRQQ--VSYCAQTPALFGD-TVEDNLIFP--WQIRNRRPDRAAALDLLARFALPDSILTK 129
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
I +SGG+K+R+ +
Sbjct: 130 N-----------------------------------------ITELSGGEKQRIALIRNL 148
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401
K L +DEI++ LD S I + + +V + + + + + + D ++ L
Sbjct: 149 QFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAV-LWITHDKDQAIRHADKVITL 207
Query: 402 SEGHLVYQGPRAEV 415
GH G E
Sbjct: 208 QPGHA---GEMQEA 218
|
Length = 223 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 9e-07
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
+ +L D++ V+ G +LGP GKSTLL +AG + SG + +G +
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPG 71
Query: 226 VQRTSAYISQTDNHIPELTVRE 247
Y+ Q D +P LTV +
Sbjct: 72 PDI--GYVFQEDALLPWLTVLD 91
|
Length = 248 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 9e-07
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
LLS ++ PG + G SGAGKT+L+ LAG + G I P + +
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL--- 459
Query: 914 SGYVEQNDIHSPQVTVEESLWF-SANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
++ Q + PQ T+ E+L + +A S + V+ V L L + L
Sbjct: 460 --FLPQRP-YLPQGTLREALCYPNAAPDFS--------DAELVAVLHKVGLGDLAERLDE 508
Query: 973 F-PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1032 VCTIHQPSIDIFEA 1045
+ H+P++ F +
Sbjct: 568 ISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 9e-07
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 22/218 (10%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPK 905
E + L+ VS + G +++G +G+GK+T ++ G EG +KI G +
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAE 74
Query: 906 EQSTFARISGYVEQN-DIHSPQVTVEESLWFSANLRLSKEVSKNQ---RHEFVEEVMRLV 961
R G V QN D TVE+ + F +NQ R E ++ V +
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM---------ENQGIPREEMIKRVDEAL 125
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
++ D P LS Q++R+ +A + P II +DE TS LD +MR +
Sbjct: 126 LAVNMLDFKTREPAR--LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183
Query: 1022 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
+ + V +I +D + D +L+M + G +I
Sbjct: 184 HEIKEKYQLTVLSITH-DLDEAASSDRILVM-KAGEII 219
|
Length = 277 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 55/193 (28%)
Query: 862 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQND 921
F G LT + G +G+GK+T++D + G G + A +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAI------GLALG----------GAQSATRRRSGVKAG 61
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
V+ E + ++L S G
Sbjct: 62 CIVAAVSAE----------------------LIFTRLQL---------------SGGEKE 84
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1041
L +A+ + + +DE GLD R + + + G V+ H P +
Sbjct: 85 LSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--E 142
Query: 1042 IFEAFDELLLMKR 1054
+ E D+L+ +K+
Sbjct: 143 LAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 14/158 (8%)
Query: 867 LTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYPKEQSTFARISGYVE 918
+TA++G SG GK+T + D++ T G + D + I G ++ + G V
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 919 QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFPGSS 977
Q P+ + + RL K Q E VE+ +R L D + D L +
Sbjct: 127 QKPNPFPKSIFDN---IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD--KNAL 181
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 9e-07
Identities = 34/250 (13%), Positives = 76/250 (30%), Gaps = 26/250 (10%)
Query: 1175 RLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERT 1234
+ + + L+ G G + + + + + V + ++ R
Sbjct: 55 PILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFRE 114
Query: 1235 VFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINF--ERTARKFFLFLVF 1292
+ + SP+ +PY+ V ++I G + + L L+
Sbjct: 115 REFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLL 174
Query: 1293 MFLTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQ-SGFLIPRPSIPGWWIWFYYI 1351
+ L G++ +Q A L SG P +P W YI
Sbjct: 175 LLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYI 234
Query: 1352 SPVAWTLRGIVSSQLGDVETMIVEPTFRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLF 1411
+P+ + + + LG G+ + +S +L+ F+++F
Sbjct: 235 NPLTYAIDALRYVYLG-----------------------GWRNDGIWISLLILLLFAVVF 271
Query: 1412 FGSFAFSVKF 1421
++
Sbjct: 272 LLLGLLLLRR 281
|
Length = 286 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 9e-07
Identities = 47/201 (23%), Positives = 96/201 (47%), Gaps = 24/201 (11%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVL--AGRKTGGYI-------------EGD 897
++L VS + G + +++GSSG+GK+T + + + + G I +G
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 898 IKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSAN-LRLSKEVSKNQRHEFVEE 956
+K++ + + R++ + ++ S +E + L LSK+ ++ + +++ +
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAK 138
Query: 957 VMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
V +D A +P LS Q++R++IA L P ++ DEPTS LD
Sbjct: 139 V----GIDE--RAQGKYP--VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 1017 VMRTVRNTVDTGRTVVCTIHQ 1037
V+R ++ + G+T+V H+
Sbjct: 191 VLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 27/193 (13%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KEQST 909
L S +S + G L + G +GAGKT+L+ +LAG R G++ G P +++
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRDE 71
Query: 910 FARISGYV-EQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
+ + Y+ Q I ++T E+L F RL E + +V
Sbjct: 72 YHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEALWEALAQV----------- 117
Query: 969 ALVGF---PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
L GF P LS Q++R+ +A + + +DEP + +D + A + +
Sbjct: 118 GLAGFEDVPVRQ-LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176
Query: 1026 DTGRTVVCTIHQP 1038
+ G V+ T HQ
Sbjct: 177 EQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 64/266 (24%), Positives = 92/266 (34%), Gaps = 68/266 (25%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
I++ V PG +T LLGP SGKSTLL LAG L +G + G L
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLS 69
Query: 226 VQRTS---AYISQTDNHIPELTVRET-----FDFAARWQGANEGFAAYINDLNRLEKERN 277
+ + A + Q + LTVR+ + W G
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGD------------------- 110
Query: 278 IRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGL-DLCSETVVGNDMIRGVSGGQKKRVT 336
SP A D L L L + +SGG+++RV
Sbjct: 111 ---SPHDAAV--------------VDRALARTELSHLADRDM------STLSGGERQRVH 147
Query: 337 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL-- 394
+ K L +DE + LD + + +R T++ AL DL
Sbjct: 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAAL-------HDLNL 199
Query: 395 ----FDDLLLLSEGHLVYQGPRAEVL 416
D +++L G +V GP EVL
Sbjct: 200 AASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQP 387
SGG ++RV + K L DE +T LD + QI+ L+ + +++
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI---- 210
Query: 388 PPETFDL------FDDLLLLSEGHLVYQGPRAEVLE 417
T DL D + ++ G +V +GP E+ +
Sbjct: 211 ---THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 41/249 (16%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKL------DSSLKKSGNITYNGYKL-- 221
L+ V + G M LLGP SGKSTLL L+G + S ++ G +L
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 222 DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
D + + YI Q N + L+V E A G+ + + R +K+R ++
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGA--LGSTPFWRTCFSWFTREQKQRALQ-- 135
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
A + V VST +SGGQ++RV +
Sbjct: 136 ----ALTRVGMVHFAHQRVST------------------------LSGGQQQRVAIARAL 167
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401
+ K + DE LD + ++ LR+ ++Q D ++ L + ++ L
Sbjct: 168 MQQAKVILADEPIASLDPESARIVMDTLRD-INQNDGITVVVTLHQVDYALRYCERIVAL 226
Query: 402 SEGHLVYQG 410
+GH+ Y G
Sbjct: 227 RQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 32/242 (13%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY------IEGDIKISGYPKEQ 907
+L ++S PG +TAL+G +GAGK+TL+ LAG TGG + GD+ ++G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 908 ---STFARISGYVEQNDIHSPQVTVEE--SLWFSANLRLSKEVSKNQRHEFVEEVMRLVE 962
AR+ + Q + + E L + R + ++ E + + L
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG-EIAWQALALAG 134
Query: 963 LDSL--RDALVGFPGSSGLSTEQRKRLTIAVEL---------VANPSIIFMDEPTSGLDA 1011
+L RD + LS + R+ A L P + +DEPT+ LD
Sbjct: 135 ATALVGRDV-------TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 1012 RAAAIVMRTVRNTVDTGRTVVCTI-HQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKT 1070
++ TVR V I H P++ A D + ++ G V +G V +
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPADVLTPA 246
Query: 1071 MI 1072
I
Sbjct: 247 HI 248
|
Length = 272 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-06
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYP 904
+ + L+NVS G + ++G+SGAGK+TL+ + R T G + ++
Sbjct: 14 GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALS 73
Query: 905 KEQSTFARIS-GYVEQ--NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
+++ AR G + Q N + S TV +++ L L+ K + V E++ LV
Sbjct: 74 EKELRKARRQIGMIFQHFNLLSSR--TVFDNVALP--LELAG-TPKAEIKARVTELLELV 128
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L D +P + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 129 GLSDKADR---YP--AQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 31/229 (13%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L ++S G ++G +GAGK+TL+ ++AG + T G +K++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSAN-LRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
++ +E P++T E+++ L L+++ E V+E++ EL D V
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEID----EKVDEIIEFAELGDFIDQPV 145
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
S+ RL +V P I+ +DE + DA + + V+ +T+
Sbjct: 146 K-----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200
Query: 1032 VCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDG 1080
V H I + D + ++ G + G + +I ++
Sbjct: 201 VLVSHDLGA-IKQYCDRAIWLEHGQIRMEGS-----PEEVIPAYEEDLA 243
|
Length = 249 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 74/262 (28%), Positives = 116/262 (44%), Gaps = 42/262 (16%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907
P+ L NV+ PG + + G +G+GK+TL+ ++ ++ EGDI+ P +
Sbjct: 324 PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLTK 381
Query: 908 -------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRL 960
S A +S Q S + N+ L + + Q +E V RL
Sbjct: 382 LQLDSWRSRLAVVS-----------QTPFLFSDTVANNIALGRPDATQQE---IEHVARL 427
Query: 961 --VELDSLR-----DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
V D LR D VG G LS Q++R++IA L+ N I+ +D+ S +D R
Sbjct: 428 ASVHDDILRLPQGYDTEVGERGVM-LSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG--GKLGVHS--- 1068
++ +R + GRTV+ + H+ S + EA E+L+M+ G G +L S
Sbjct: 487 EHQILHNLRQWGE-GRTVIISAHRLSA-LTEA-SEILVMQHGHIAQRGNHDQLAQQSGWY 543
Query: 1069 KTMIDYFQ---ALDGIPSIPSG 1087
+ M Y Q ALD P I
Sbjct: 544 RDMYRYQQLEAALDDAPEIREE 565
|
Length = 569 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 21/212 (9%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY--PKEQST 909
L +V+ G A++G +G+GK+TL+ L G + T G + G+ I+ K+
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 910 FARISGYVEQNDIHSPQV---TVEESLWFS-ANLRLSKEVSKNQRHEFVEEVMRLVELDS 965
+ G V Q H Q+ TVE+ + F N +S+E +K + E++ LV L
Sbjct: 83 LRKKVGIVFQFPEH--QLFEETVEKDICFGPMNFGVSEEDAK----QKAREMIELVGLPE 136
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNT 1024
+ L P LS Q +R+ IA L P ++ +DEPT+GLD + +M +
Sbjct: 137 --ELLARSPFE--LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192
Query: 1025 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056
+ G T V H D D++++M +G
Sbjct: 193 KEKGLTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 68/214 (31%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKEQST 909
LS + PG + ALVG +GAGK+T+M VL G + G I ++ +G PK S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG-PK-SSQ 77
Query: 910 FARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKE-VSKNQR---HEFVEEVMRLVELD 964
A I + E N I PQ+T+ E N+ L +E V++ R + E +L+
Sbjct: 78 EAGIGIIHQELNLI--PQLTIAE------NIFLGREFVNRFGRIDWKKMYAEADKLLARL 129
Query: 965 SLR---DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
+LR D LVG LS +++ + IA L +I MDEPT L + R +
Sbjct: 130 NLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI 184
Query: 1022 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
R GR +V H+ +IFE D++ + + G
Sbjct: 185 RELKSQGRGIVYISHRLK-EIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-06
Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 36/163 (22%)
Query: 870 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGY------PKEQSTFARISGYVEQNDI 922
LVG SG GK+TL+ ++AG + I G+I I G P + R V QN
Sbjct: 35 LVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPAD-----RDIAMVFQNYA 86
Query: 923 HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD----ALVGFPGSSG 978
P ++V E++ + L++ + K + E V E R++EL+ L D L S G
Sbjct: 87 LYPHMSVRENMAYG--LKIRG-MPKAEIEERVAEAARILELEPLLDRKPREL-----SGG 138
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMR 1019
QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 139 ----QRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 28/184 (15%)
Query: 867 LTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPKEQSTF-----ARIS 914
+TAL+G SG GK+T + D++ G K IEG++ G + F R
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYSNNFDILELRRKI 90
Query: 915 GYVEQNDIHSPQ---VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDAL 970
G V Q +P +++ +++ + + +K+ K + E VE+ ++ L + ++D L
Sbjct: 91 GMVFQ----TPNPFLMSIYDNISYGPKIHGTKD--KKKLDEIVEQSLKKSALWNEVKDKL 144
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
+ LS Q++RL IA L P++I MDEPTS LD + + + N ++
Sbjct: 145 N--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTI 202
Query: 1031 VVCT 1034
++ T
Sbjct: 203 IIVT 206
|
Length = 254 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 23/198 (11%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG---------YP 904
+L +++ + ++G SG+GK+TL+ VL R Y + IK+ G +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIY-DSKIKVDGKVLYFGKDIFQ 82
Query: 905 KEQSTFARISGYVEQNDIHSPQVTVEESLWF---SANLRLSKEVSKNQRHEFVEEVMRLV 961
+ + G V Q P +++ +++ + S ++ +E+ K VEE +R V
Sbjct: 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKK-----IVEECLRKV 137
Query: 962 EL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
L + D L P S LS Q++RLTIA L P ++ MDEPTS +D + + +
Sbjct: 138 GLWKEVYDRL-NSPASQ-LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195
Query: 1021 VRNTVDTGRTVVCTIHQP 1038
+ + +V H P
Sbjct: 196 I-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYP-KEQS 908
K Q L +++ +TAL+G+SG GK+T + I+G ++I G K Q
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73
Query: 909 TFA--RISGYVEQNDIHSPQVTVE---ESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963
A + G V Q P V V+ E++ ++ L + +K++ V + ++ V L
Sbjct: 74 VVALRKNVGMVFQQ----PNVFVKSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGL 128
Query: 964 -DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
+ ++D L + LS Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 129 FEEVKDKLK--QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 60/261 (22%), Positives = 94/261 (36%), Gaps = 61/261 (23%)
Query: 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAG--KLDSSLKKSGNITYNGYKLD 222
SL + G G T + G SGK+TL+ +AG + D G I NG L
Sbjct: 12 FSLDADFTLPGQ---GV-TAIFGRSGSGKTTLIRLIAGLTRPDE-----GEIVLNGRTLF 62
Query: 223 EFHV-------QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275
+ +R Y+ Q P L+VR + + E
Sbjct: 63 DSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARP---------------SE 107
Query: 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
R I + V+++LG+ + G +SGG+K+RV
Sbjct: 108 RRISF----------------------ERVIELLGIGHLLGRLPGR-----LSGGEKQRV 140
Query: 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLF 395
G ++ + L MDE LD ++I+ L + IL + E L
Sbjct: 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY-VSHSLQEVLRLA 199
Query: 396 DDLLLLSEGHLVYQGPRAEVL 416
D +++L +G + GP AEV
Sbjct: 200 DRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 62/288 (21%), Positives = 112/288 (38%), Gaps = 65/288 (22%)
Query: 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLL---LALAGKLDSSLKKSGNITY-----NG 218
LT+L+ ++ V G L+GP SGKST+L + L + ++ G Y NG
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 219 YKL--DEFHVQRTSAYIS---QTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLE 273
+ DE H+++ I Q+ N P TV
Sbjct: 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVL--------------------------- 105
Query: 274 KERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKK 333
N+ +P + V G + + +++L D+ + M +SGGQ++
Sbjct: 106 --DNVTEAPVL--------VLGMARAEAEKRAMELL--DMVGLADKADHMPAQLSGGQQQ 153
Query: 334 RVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETF- 392
RV + K + DE+++ LD +++ +R + D T+L+ + F
Sbjct: 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE---MGFA 210
Query: 393 -DLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEV 439
+ D + +G +V QG E+ F+ P + +FL +V
Sbjct: 211 REFADRVCFFDKGRIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 24/193 (12%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQST 909
+L+N+S G A+ G SG GK+TL+ ++A T G EG+ +S E
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DVSTLKPEAYR 76
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
++S Y Q TVE++L F +R + R ++ + R DS+
Sbjct: 77 -QQVS-YCAQTPALFGD-TVEDNLIFPWQIR----NRRPDRAAALDLLARFALPDSILTK 129
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRTVRNTV 1025
+ + LS +++R+ + L P I+ +DE TS LD ++ R VR
Sbjct: 130 NI-----TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR--- 181
Query: 1026 DTGRTVVCTIHQP 1038
+ V+ H
Sbjct: 182 EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 4e-06
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYI--EGDIKISGY 903
+ ++++S +TAL+G SG GK+T + D++ ++ G I EG + I
Sbjct: 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG-LNILDS 93
Query: 904 PKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963
R G V Q P+ + L+ + E K+ E VEE + L
Sbjct: 94 NINVVNLRREIGMVFQKPNPFPKSIYNN---ITHALKYAGERRKSVLDEIVEESLTKAAL 150
Query: 964 -DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
D ++D L + LS Q++RL IA L P+++ +DEP S LD
Sbjct: 151 WDEVKDRL--HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKEQS 908
++ + +S G A++G +G+GK+TL +LAG IE G++ I +P
Sbjct: 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGELLIDDHPLHFG 80
Query: 909 TFARISGYVE---QNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963
++ S + Q+ S P+ + + L F LRL+ ++ QR + + E +R V L
Sbjct: 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGL 138
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L D +P L+ Q++RL +A L+ P +I DE + LD
Sbjct: 139 --LPDHASYYP--HMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-06
Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 62/204 (30%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAG----------------------RKT--GGY----IE 895
PG + ++G +G GK+T + +LAG R T Y E
Sbjct: 99 PGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYE 158
Query: 896 GDIKISGYPKEQSTFARISGYVEQNDIHSPQV---TVEESLWFSANLRLSKEVSKNQRHE 952
G+++ P+ YV+ P+V V E L K+V + +
Sbjct: 159 GELRAVHKPQ----------YVD----LIPKVVKGKVGELL---------KKVDERGK-- 193
Query: 953 FVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+EV+ + L+++ D V S LS + +R+ IA L+ + + F DEP+S LD R
Sbjct: 194 -FDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIR 247
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIH 1036
R +R + G+ V+ H
Sbjct: 248 QRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 4e-06
Identities = 42/205 (20%), Positives = 59/205 (28%), Gaps = 70/205 (34%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIH 923
PG + +VG G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 924 SPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983
E + LD L +VG S
Sbjct: 39 --------------------------------EDILEEVLDQLLLIIVG---GKKASGSG 63
Query: 984 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1035
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1036 HQPSIDIFEAFDELLLMKRGGRVIY 1060
+ LL +R R I
Sbjct: 124 NDEKD-----LGPALLRRRFDRRIV 143
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 66/275 (24%), Positives = 108/275 (39%), Gaps = 67/275 (24%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQR 228
L +VS V+ G ++LGP SGKS LL +AG + SG I NG + +R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 229 TSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFM 288
+Y+ Q P +TV + + + +++ E ER + EI +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLK-----------KRKVDKKEIERKVL---EIAEML 117
Query: 289 KASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTL 348
+ L+ ET +SGG+++RV +V K L
Sbjct: 118 GIDHL-----------------LNRKPET---------LSGGEQQRVAIARALVVNPKIL 151
Query: 349 FMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE----- 403
+DE + LD T ++ + L+ + T+L T D F++ L++
Sbjct: 152 LLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV-------THD-FEEAWALADKVAIM 203
Query: 404 --GHLVYQGPRAEVLEFFESLGFQLPPRKGVADFL 436
G L+ G EV F+ P + VA+FL
Sbjct: 204 LNGKLIQVGKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 53/200 (26%), Positives = 78/200 (39%), Gaps = 52/200 (26%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLK-KSGNITYNGYKLDEFHV- 226
IL V+ VK G + ++GP SGKSTL + G + G I ++G + E
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGEDILELSPD 76
Query: 227 QRTSAYIS---QTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
+R A I Q IP +T + F AA +N R I PE
Sbjct: 77 ERARAGIFLAFQYPVEIPGVTNSD-FLRAA---------------MNARRGARGIL--PE 118
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI-RGV----SGGQKKRVTTG 338
+K ++LGLD + + R V SGG+KKR
Sbjct: 119 FIKELKE--------------KAELLGLD--------EEFLERYVNEGFSGGEKKRNEIL 156
Query: 339 EMIVGPRKTLFMDEISTGLD 358
++++ K +DE +GLD
Sbjct: 157 QLLLLEPKLAILDEPDSGLD 176
|
Length = 251 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 60/261 (22%), Positives = 96/261 (36%), Gaps = 68/261 (26%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD----E 223
IL VS V G +T +LG GK+TLL L G L KSG+I +G +
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIRLDGEDITKLPPH 70
Query: 224 FHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
+ AY+ Q P LTV E N+
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEE-----------------------------NLL---- 97
Query: 284 IDAFMKASSVGGKKHSVSTD-Y----VLKVLGLDLCSETVVGNDMI--RG--VSGGQKKR 334
+++ + + + Y VLK +M+ RG +SGGQ+++
Sbjct: 98 ----TGLAALPRRSRKIPDEIYELFPVLK--------------EMLGRRGGDLSGGQQQQ 139
Query: 335 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL 394
+ +V K L +DE + G+ S I + +R + IL+ + Q +L
Sbjct: 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILL-VEQYLDFAREL 198
Query: 395 FDDLLLLSEGHLVYQGPRAEV 415
D ++ G +V G E+
Sbjct: 199 ADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 5e-06
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 862 FSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEG--DIKISGYPKEQSTFARISGY 916
F +TA +G +GAGKTT + +L G +G + G DI+ + QS G
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL-----GM 1007
Query: 917 VEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976
Q++I +TV E + F A L K S + +E ++ L R+ +
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQL---KGRSWEEAQLEMEAMLEDTGLHHKRNE-----EA 1059
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVC 1033
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIM 1115
Query: 1034 TIHQ 1037
+ H
Sbjct: 1116 STHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 42/256 (16%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAG--KLDSSLKKSGNITYNG---YK 220
+ +L+ V+ + +T L+GP SGKSTLL +L + SG + +G +K
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 221 LDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRP 280
+D ++R + Q N IP L++ E + LNRL K +
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLK--------------LNRLVKSKKELQ 120
Query: 281 SPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEM 340
A KA D V L +SGGQ++R+
Sbjct: 121 ERVRWALEKAQ---------LWDEVKDRLDAPAGK-----------LSGGQQQRLCIARA 160
Query: 341 IVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400
+ + L DE + LD T +I M TI++ + P + + D +
Sbjct: 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM--TIVL-VTHFPQQAARISDYVAF 217
Query: 401 LSEGHLVYQGPRAEVL 416
L +G +V GP EV
Sbjct: 218 LYKGQIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 5e-06
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 27/165 (16%)
Query: 859 SGVFSPGVLTALVGSSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKEQSTFARISGYV 917
G G + ++G +G GKTT + +LAG K E D+K+S P+ Y+
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQ----------YI 410
Query: 918 EQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977
+ TVE+ L + + F E+++ + L+ L + V
Sbjct: 411 SPD----YDGTVEDLLR-----SAIRSAFGSSY--FKTEIVKPLNLEDLLERPV-----D 454
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 43/213 (20%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLAL--AGKLDSSLKKSGNITYNGYKL-----D 222
LN VS P +T L+GP SGKSTLL ++ L+ + +G+I YNG+ + D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
+++ + Q N P +++ E + R +G I D L++
Sbjct: 81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--------IKDKQVLDE-------- 123
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
++ +K +S+ D V L +D G+SGGQ++RV ++
Sbjct: 124 AVEKSLKGASI--------WDEVKDRL-----------HDSALGLSGGQQQRVCIARVLA 164
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQ 375
K + +DE ++ LD + +I + L
Sbjct: 165 TSPKIILLDEPTSALDPISAGKIEETLLGLKDD 197
|
Length = 252 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 44/184 (23%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTF 910
K + + + F +TAL+G SG+GK+T + L + I+
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL--NRMNDTIDI-------------- 75
Query: 911 ARISGYV--EQNDIHSPQVTVEE-----SLWFSANLRLSKEVSKN-----QRH------- 951
AR++G + DI+ ++ V E + F +K + +N +R
Sbjct: 76 ARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKV 135
Query: 952 --EFVEEVMRLVEL-DSLRDALVGFPGSSG--LSTEQRKRLTIAVELVANPSIIFMDEPT 1006
E VE ++ L D ++D L S LS Q++RL IA + P I+ MDEP
Sbjct: 136 LDEIVETSLKQAALWDQVKDDL----HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPA 191
Query: 1007 SGLD 1010
S LD
Sbjct: 192 SALD 195
|
Length = 267 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 55/273 (20%)
Query: 149 VFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSL 208
FE + F+ K IL+++S +KPG + ++G SGKSTL KL
Sbjct: 2 TFEHVR-----FRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRF 51
Query: 209 --KKSGNITYNGYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFA 263
++G + +G+ L D ++R + Q +N + ++R+ A
Sbjct: 52 YVPENGRVLVDGHDLALADPAWLRRQVGVVLQ-ENVLFNRSIRDNIALA----------- 99
Query: 264 AYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323
P ++ ++A+ + G + D++ + L +T+VG
Sbjct: 100 ---------------DPGMSMERVIEAAKLAG-----AHDFISE---LPEGYDTIVGEQG 136
Query: 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
G+SGGQ++R+ ++ + L DE ++ LD + I++ + + I+
Sbjct: 137 A-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAH 195
Query: 384 LLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVL 416
L T D ++++ +G +V QG E+L
Sbjct: 196 RLS----TVKNADRIIVMEKGRIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-06
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 46/253 (18%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG---YKLDEF 224
+L D+S ++PG ++GP SGKSTL+ L D SG I +G +
Sbjct: 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLD 399
Query: 225 HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+++ +SQ D + T+RE RP
Sbjct: 400 SLRKRIGIVSQ-DPLLFSGTIRENIALG--------------------------RPDATD 432
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+ +A K + + +++ L +T+VG + +SGGQ++R+ ++
Sbjct: 433 EEIEEAL-----KLANAHEFIAN---LPDGYDTIVGERGVN-LSGGQRQRLAIARALLRN 483
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
L +DE ++ LD+ T I L+ + T L+ + T D +++L G
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLDNG 539
Query: 405 HLVYQGPRAEVLE 417
+V +G E+L
Sbjct: 540 RIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 8e-06
Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 44/215 (20%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL-DEFHV 226
T L+D++ + G +LLGP GK+T L +AG + + SG I G + D
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 227 QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDA 286
R A + Q P +TV + F + P EID
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLK---------------------LRKVPKDEIDE 109
Query: 287 FMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRK 346
+ V+ ++L ++ + + + +SGGQ++RV G IV K
Sbjct: 110 ---------RVREVA-----ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPK 150
Query: 347 TLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
MDE + LD+ Q+ L+ ++ T +
Sbjct: 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTI 185
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 33/176 (18%)
Query: 867 LTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG---YPKEQSTF---ARI 913
+TA +G SG GK+T + D + K ++G++ I G Y + + A++
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGIDVYSVDTNVVLLRAKV 88
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLR-LSKEVSKNQRHEFVEEVMRLVEL-----DSLR 967
G V Q P+ ++ +++ + L L+K +K + E VE+ + V L D L+
Sbjct: 89 -GMVFQKPNPFPK-SIYDNVAYGPKLHGLAK--NKKKLDEIVEKSLTSVGLWEELGDRLK 144
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
D+ + LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 145 DS------AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 9e-06
Identities = 57/250 (22%), Positives = 90/250 (36%), Gaps = 46/250 (18%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD----E 223
IL D+S V PG ++GP +GK+TLL L G+ S SG++T G +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETI 101
Query: 224 FHVQRTSAYIS-QTDNHIP-ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
F +++ +S + TVR+ G Y DL +
Sbjct: 102 FELRKRIGLVSSELHERFRVRETVRD-----VVLSGFFASIGIYQEDLTAEDLAAAQ--- 153
Query: 282 PEIDAFMKASSVGGKK-HSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEM 340
+ + A + + S+S G+++RV
Sbjct: 154 -WLLELLGAKHLADRPFGSLSQ---------------------------GEQRRVLIARA 185
Query: 341 IVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400
+V + L +DE + GLD Q++ L A L+ + E F LL
Sbjct: 186 LVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLL 245
Query: 401 LSEGHLVYQG 410
L EG +V QG
Sbjct: 246 LKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 9e-06
Identities = 60/248 (24%), Positives = 91/248 (36%), Gaps = 55/248 (22%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL-DEFHVQ 227
++N +S V G LLGP +GKST+ + G +G IT G + +
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLA 112
Query: 228 RTS-AYISQTDNHIPELTVRETFDFAARWQGAN----EGFAAYINDLNRLEKERNIRPSP 282
R + Q DN E TVRE R+ G + E + + RLE + + R S
Sbjct: 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVS- 171
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
DL SGG K+R+T ++
Sbjct: 172 -----------------------------DL--------------SGGMKRRLTLARALI 188
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402
+ L +DE +TGLD I + LR+ + + +L E L D L +L
Sbjct: 189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER--LCDRLCVLE 246
Query: 403 EGHLVYQG 410
G + +G
Sbjct: 247 AGRKIAEG 254
|
Length = 340 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 9e-06
Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 18/182 (9%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--EQSTF 910
++L VS +TA++G SG GK+T + L +E ++++ G + Q+ +
Sbjct: 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIY 77
Query: 911 AR---ISGYVEQNDIHSPQ-----VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE 962
R ++ Q + P+ ++V +++ + +++ K + + VE ++ +
Sbjct: 78 ERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG--VKIVGWRPKLEIDDIVESALKDAD 135
Query: 963 L-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
L D ++ + + LS Q++RL IA L P ++ MDEP GLD A+ V +
Sbjct: 136 LWDEIKHKI--HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI 193
Query: 1022 RN 1023
++
Sbjct: 194 QS 195
|
Length = 261 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-06
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 16/207 (7%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKE--QSTF 910
L NV+ P + AL+G +GAGK+TL+ L G +K G I G + S
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKEIDFKSSKE 69
Query: 911 ARISG--YVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
A +G V Q Q +V +++W V +++ + + + ELD D
Sbjct: 70 ALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD--ELDIDID 127
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
+ LS Q + + IA N I+ MDEPTS L + + +R + G
Sbjct: 128 PRAKV---ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG 184
Query: 1029 RTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+V H+ +IF+ DE+ +++ G
Sbjct: 185 CGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 59/252 (23%), Positives = 98/252 (38%), Gaps = 47/252 (18%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--H 225
+++ +S V+ G LLGP +GK+T L L G + +G+I+ G + H
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG---LTHPDAGSISLCGEPVPSRARH 77
Query: 226 VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
++ + Q DN P+ TVRE R+ G + AA L P +
Sbjct: 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS---AAAARAL-----------VPPLL 123
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
F K + K + +SGG K+R+T +V
Sbjct: 124 EFAKLENKADAK--------------------------VGELSGGMKRRLTLARALVNDP 157
Query: 346 KTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405
L +DE +TGLD + + LR+ + + +L E L D L ++ EG
Sbjct: 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAER--LCDRLCVIEEGR 215
Query: 406 LVYQGPRAEVLE 417
+ +G ++E
Sbjct: 216 KIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 64/269 (23%), Positives = 103/269 (38%), Gaps = 80/269 (29%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ- 227
+L D+S + G L+GP SGKSTL+ + D SG I +G+ + ++ +
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 228 --RTSAYISQTDNHIPELTVRETFDFAARWQGANE------GFAAYINDLNRLEKERNIR 279
R +SQ D + TV E + GA AA ++ I
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAYGRP--GATREEVEEAARAANAHEF--------IM 122
Query: 280 PSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV--SGGQKKRVTT 337
PE G D TV+G RGV SGGQ++R+
Sbjct: 123 ELPE--------------------------GYD----TVIGE---RGVKLSGGQRQRIAI 149
Query: 338 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRN-------FV--HQMDATILMALLQPP 388
++ L +DE ++ LD+ + + L FV H++ +TI A
Sbjct: 150 ARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRL-STIENA----- 203
Query: 389 PETFDLFDDLLLLSEGHLVYQGPRAEVLE 417
D +++L +G +V +G E+L
Sbjct: 204 -------DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 65/258 (25%), Positives = 99/258 (38%), Gaps = 75/258 (29%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY---KLDEFH 225
L DVS + G L GP +GKSTLL + G+ + G I NG+ +L
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGRE 73
Query: 226 V---QRTSAYISQTDNH-IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
+ +R + Q D +P+ TV E R G +P
Sbjct: 74 IPFLRRQIGVVFQ-DFRLLPDRTVYENVALPLRVIG---------------------KPP 111
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGL-----DLCSETVVGNDMIRGVSGGQKKRVT 336
EI + VS VL ++GL L S+ +SGG+++RV
Sbjct: 112 REI------------RRRVSE--VLDLVGLKHKARALPSQ----------LSGGEQQRVA 147
Query: 337 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFD--L 394
IV L DE + LD +++I++ +++ T+LMA T D L
Sbjct: 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI-NRLGTTVLMA-------THDLEL 199
Query: 395 FDDL----LLLSEGHLVY 408
+ + L L +G LV
Sbjct: 200 VNRMRHRVLALEDGRLVR 217
|
Length = 223 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 47/220 (21%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STF 910
+LS++S T +VG SG+GK+TL +L G G+I ++G+ + T
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFSLKDIDRHTL 546
Query: 911 ARISGYVEQNDIHSPQV---TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ Y+ Q P + ++ E+L A +S+ +E+ E+ ++
Sbjct: 547 RQFINYLPQE----PYIFSGSILENLLLGAKENVSQ-----------DEIWAACEIAEIK 591
Query: 968 DALVGFP---------GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
D + P S +S Q++R+ +A L+ + ++ +DE TS LD ++
Sbjct: 592 DDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIV 651
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058
+ N D +T++ H+ + + + D+++++ G +
Sbjct: 652 NNLLNLQD--KTIIFVAHR--LSVAKQSDKIIVLDHGKII 687
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 44/254 (17%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKL---DSSLKKSGNITYNG---YKLD 222
IL D++ + + ++GP SGKSTLL L + DS +K G + Y G +++D
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
+++ + Q N P L++ + + + G I+
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--------------------IKEKR 124
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
EI ++ L+ +GL + N +SGGQ++R+T +
Sbjct: 125 EIKKIVEEC--------------LRKVGLWKEVYDRL-NSPASQLSGGQQQRLTIARALA 169
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402
K L MDE ++ +D + I K + +++ I+ P + + D + L
Sbjct: 170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS---HNPQQVARVADYVAFLY 226
Query: 403 EGHLVYQGPRAEVL 416
G LV G E+
Sbjct: 227 NGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 27/165 (16%)
Query: 860 GVFSPGVLTALVGSSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKEQSTFARISGYV 917
G S + ++G +G GKTT + +LAG G IE ++ Y K Q A G V
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEGTV 78
Query: 918 EQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977
L S F E+ + ++++ + D V
Sbjct: 79 RD-------------------LLSSITKDFYTHPYFKTEIAKPLQIEQILDREV-----P 114
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 35/195 (17%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L N+S SPG L+G +G+GK+TL+ EGDI+I G
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDG----------- 64
Query: 914 SGYVEQNDIHSPQ------VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
V N + + V ++ FS R K + + EE+ ++ E L+
Sbjct: 65 ---VSWNSVPLQKWRKAFGVIPQKVFIFSGTFR--KNLDPYGKWS-DEEIWKVAEEVGLK 118
Query: 968 DALVGFPGSSG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
+ FPG LS ++ + +A +++ I+ +DEP++ LD ++
Sbjct: 119 SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIR 178
Query: 1019 RTVRNTVDTGRTVVC 1033
+T++ ++
Sbjct: 179 KTLKQAFADCTVILS 193
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 58/257 (22%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYN 217
+ F T L+D+S V+ G + LLGP +GK+T + + G + L SG + ++
Sbjct: 8 KRFGRV----TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLFD 60
Query: 218 GYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERN 277
G LD R Y+ + P++ V + + A+ +G L + E R
Sbjct: 61 GKPLDIAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKG-----------LKKEEARRR 108
Query: 278 IRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTT 337
I D L+ L L + N + +S G +++V
Sbjct: 109 I------------------------DEWLERLEL-----SEYANKRVEELSKGNQQKVQF 139
Query: 338 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL----MALLQPPPETFD 393
++ + L +DE +GLD + +R IL M L++ +
Sbjct: 140 IAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE------E 193
Query: 394 LFDDLLLLSEGHLVYQG 410
L D +LLL++G V G
Sbjct: 194 LCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 52/222 (23%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
L+DVS ++ G L GP +GK+TLL L G L S G + G ++ ++
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQ 73
Query: 229 TSAY------ISQTDNHI-PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
+ Q D + P+ TV E +G KER I+
Sbjct: 74 LPLLRRRIGVVFQ-DFRLLPDRTVYENVALPLEVRGK---------------KEREIQ-- 115
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
V L+ +GL+ ++ +SGG+++RV I
Sbjct: 116 ----------------RRVGA--ALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAI 152
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
V L DE + LD + +I+ L+ ++ T+++A
Sbjct: 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 46/210 (21%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY----KLDEFH 225
LND+S V PG + +L+GP +GK+TL+ + GK G + ++G KL E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHR 77
Query: 226 VQRTSAYIS---QTDNHIPELTVRETFDFAARWQGANEG-FAAYINDLNRLEKERNIRPS 281
+ R A I Q LTVRE + A ++ FA+ L E+ R
Sbjct: 78 IAR--AGIGRKFQKPTVFENLTVRENLELA---LNRDKSVFASLFARLRAEERRR----- 127
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
D +L +GL + + +S GQK+ + G ++
Sbjct: 128 --------------------IDELLATIGL-----GDERDRLAALLSHGQKQWLEIGMLL 162
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRN 371
K L +DE G+ + T + + L++
Sbjct: 163 AQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
|
Length = 249 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG 218
IL V+ +K G + L+GP SGKSTL + G + + G I + G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE-GEILFKG 63
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 17/153 (11%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQND 921
G TA++G +G GK+TL+ L+ T G + + G + AR G + QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 922 IHSPQVTVEESLWFSANLRLSKEVS----KNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977
+TV+E A R + + + E V + M+ + L D V
Sbjct: 91 TTPGDITVQE---LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----D 142
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 143 TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 60/217 (27%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L N+ VL + G SG+GK+TL
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTL--------------------------------- 37
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHE--FVEEVMRLVELDSLRDALVG 972
V E L+ S RL + K R++ F++++ L+++ L +G
Sbjct: 38 --------------VNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDV-GLGYLTLG 82
Query: 973 FPGSSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
S+ LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G T
Sbjct: 83 QKLST-LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNT 141
Query: 1031 VVCTIHQPSIDIFEAFDELLLM-----KRGGRVIYGG 1062
V+ H D+ + D ++ K GG+V++ G
Sbjct: 142 VILIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|222160 pfam13476, AAA_23, AAA domain | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 862 FSPGVLTALVGSSGAGKTTLMD----VLAGRKTG-------GYIEGDIKISGYPKEQSTF 910
FS G LT + G +G+GKTT++D L G+ + G ++GDI+I ++ T+
Sbjct: 17 FSKG-LTLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGIVKGDIEIEKDEGKKKTY 75
Query: 911 ARISGYVEQNDIHSPQVTVEESLWFSANLRLS------KEVSKNQRHEFVEE 956
I E N +EES + + V ++ EF++E
Sbjct: 76 VEI--TFENNKGKLKLRLIEESRELTKKKGKKVKKSILEIVEIDELQEFIDE 125
|
Length = 204 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 20/155 (12%)
Query: 867 LTALVGSSGAGKTTLM-------DVLAG-RKTGGYIEGDIKISGYPKEQSTFARISGYVE 918
+TA +G SG GK+T++ D++ G R G + + R G V
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVF 97
Query: 919 QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFPGSS 977
Q P+ ++ +++ + A + K E VE +R L D ++D L S
Sbjct: 98 QKPNPFPK-SIYDNIAYGARI----NGYKGDMDELVERSLRQAALWDEVKDKL----KQS 148
Query: 978 GLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLD 1010
GLS Q++RL IA + P +I MDEP S LD
Sbjct: 149 GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 45/235 (19%)
Query: 177 VKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-QRTSAYISQ 235
G +T ++GP SGKSTLL +AG +SG + NG + R + + Q
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 236 TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGG 295
+N LTV + G + G L +++ I+ + + G
Sbjct: 78 ENNLFAHLTVEQNVGL-----GLSPGL-----KLTAEDRQA-------IEVALARVGLAG 120
Query: 296 KKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 355
K L +L SGG+++RV ++V + L +DE
Sbjct: 121 L---------EKRLPGEL--------------SGGERQRVALARVLVRDKPVLLLDEPFA 157
Query: 356 GLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQG 410
LD + +++ + + + T+LM Q P + L ++ L G + QG
Sbjct: 158 ALDPALRAEMLDLVLDLHAETKMTVLMVTHQ-PEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 62/247 (25%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL--DEFHVQ 227
L++VS + GR+ LGP +GKST + + G L SG++ G + + VQ
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 228 RTSAYISQTDNHIP---ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
R Y+ + H P ++ VRE F A G +L K+R +
Sbjct: 75 RNIGYLPE---HNPLYLDMYVREYLQFIAGIYGMK----------GQLLKQR-------V 114
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+ ++ + ++H I +S G ++RV + ++
Sbjct: 115 EEMIELVGLRPEQHK-----------------------KIGQLSKGYRQRVGLAQALIHD 151
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQM--DATILMA--LLQPPPETFDLFDDLLL 400
K L +DE +TGLD + Q+V+ +RN + + D TI+++ ++Q E + D +++
Sbjct: 152 PKVLILDEPTTGLDPN---QLVE-IRNVIKNIGKDKTIILSTHIMQ---EVEAICDRVII 204
Query: 401 LSEGHLV 407
+++G +V
Sbjct: 205 INKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 63/267 (23%), Positives = 110/267 (41%), Gaps = 54/267 (20%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK--SGNIT 215
++F ++ LN+VS V G++ ++G +GKSTL+ + + L++ SG++
Sbjct: 9 KVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-----NLLERPTSGSVI 63
Query: 216 YNGYKLDEF------HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDL 269
+G L +R I Q H L+ R F A
Sbjct: 64 VDGQDLTTLSNSELTKARRQIGMIFQ---HFNLLSSRTVFGNVA---------------- 104
Query: 270 NRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSG 329
L E + P EI T+ +L ++GL ++ N +SG
Sbjct: 105 --LPLELDNTPKDEI-------------KRKVTE-LLALVGLGDKHDSYPSN-----LSG 143
Query: 330 GQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPP 389
GQK+RV + K L DE ++ LD +TT I++ L+ ++ TIL+ +
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL-ITHEMD 202
Query: 390 ETFDLFDDLLLLSEGHLVYQGPRAEVL 416
+ D + ++S G L+ QG +E+
Sbjct: 203 VVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 32/198 (16%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQST 909
Q L V+ PG + L G SGAGK+TL+ ++ G R + G I I+ +
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 910 FARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFV------EEVMRLVE 962
F R G + Q D H L + + V N + +++ R V
Sbjct: 76 FLRRQIGMIFQ-DHH---------------LLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119
Query: 963 --LDS--LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
LD L D FP LS +++R+ IA +V P+++ DEPT LD + ++
Sbjct: 120 AALDKVGLLDKAKNFPIQ--LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGIL 177
Query: 1019 RTVRNTVDTGRTVVCTIH 1036
R G TV+ H
Sbjct: 178 RLFEEFNRVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 32/227 (14%)
Query: 842 MRSQGIPEKKLQ--LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIK 899
+ S G+ ++ ++ +L N++ PG + A+VG SGAGKTTL+ ++ G + G E
Sbjct: 384 LESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRP 443
Query: 900 ISGYPK--EQSTFARISGYVEQNDIHSPQ---VTVEESLWFSANLRLSKEVSKNQRHEFV 954
SG + + + A I G E P+ VT+ E L SK
Sbjct: 444 DSGKVEVPKNTVSALIPGEYE------PEFGEVTILEHLR-----------SKTGDLNAA 486
Query: 955 EEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
E++ L DA++ S LST Q++R +A L P+++ +DE + LD A
Sbjct: 487 VEILNRA---GLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTA 543
Query: 1015 AIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAF--DELLLMKRGGRV 1058
V R + + G T++ H+P ++ A D L+L+ G
Sbjct: 544 VRVARKISELAREAGITLIVVTHRP--EVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 66/252 (26%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-- 225
+L+D+S VK G + LGP +GK+T + + G + SG IT++G +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 226 VQRTSAYISQTDNHI--PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
++R A I + P LT RE AR L + K+R
Sbjct: 71 LRRIGALI---EAPGFYPNLTARENLRLLAR--------------LLGIRKKR------- 106
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVG 343
D VL V+GL ++G S G K+R+ ++G
Sbjct: 107 ------------------IDEVLDVVGLK-----DSAKKKVKGFSLGMKQRLGIALALLG 143
Query: 344 PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDA---TILMA--LLQPPPETFDLFDDL 398
L +DE + GLD +K LR + + T+L++ LL E + D +
Sbjct: 144 NPDLLILDEPTNGLDP----DGIKELRELILSLRDQGITVLISSHLLS---EIQKVADRI 196
Query: 399 LLLSEGHLVYQG 410
++++G L+ +G
Sbjct: 197 GIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 147 RDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDS 206
R++ +R + +F +R + ++DVS ++ G L+G SGKSTL LAG L
Sbjct: 284 RNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP 343
Query: 207 SLKKSGNITYNGYKLD 222
S SG+I ++G LD
Sbjct: 344 S---SGSIIFDGQDLD 356
|
Length = 539 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
+ + + LN+VS ++ G ++G SGKSTL LAG S SG+I +G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGK 69
Query: 220 KLDE 223
L
Sbjct: 70 PLAP 73
|
Length = 252 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 63/260 (24%), Positives = 96/260 (36%), Gaps = 64/260 (24%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
++ND+S + G LLGP +GKST+ L G + G IT L E R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 229 TSA------YISQTDNHIPELTVRETFDFAARWQGAN----EGFAAYINDLNRLEKERNI 278
+ Q DN PE TVRE R+ G + E + + RLE + ++
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV 131
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG 338
R + +SGG K+R+T
Sbjct: 132 R--------------------------------------------VALLSGGMKRRLTLA 147
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398
++ + L +DE +TGLD I + LR+ + + +L E L D L
Sbjct: 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER--LCDRL 205
Query: 399 LLLSEGHLVYQG-PRAEVLE 417
+L G + +G P A + E
Sbjct: 206 CVLESGRKIAEGRPHALIDE 225
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 66/307 (21%), Positives = 107/307 (34%), Gaps = 76/307 (24%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
F L +VS + G +LG SGKST+ L G L +SG I +G
Sbjct: 15 FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDGI 71
Query: 220 KLDE---FHVQRTSAYISQT-DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275
+ + +++ I Q DN TV + F LE
Sbjct: 72 TISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG-------------------LEN- 111
Query: 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
+ + P ++ + + V + L +L SGGQK+RV
Sbjct: 112 KKVPPK-KMKDIIDDLA-----KKVGMEDYLDKEPQNL--------------SGGQKQRV 151
Query: 336 TTGEMI-VGPRKTLFMDEISTGLD---SSTTFQIVKCLRN--------FVHQMDATILMA 383
++ + P +F DE ++ LD +I+ LR H MD IL
Sbjct: 152 AIASVLALNPEIIIF-DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILA- 209
Query: 384 LLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVL---EFFESLGFQLPPRKGVADFLQEVT 440
D +++ SEG L+ QG E+L E E P ++ L+ +
Sbjct: 210 ------------DKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGID 257
Query: 441 SKKDQAQ 447
++ +
Sbjct: 258 PTYNEEE 264
|
Length = 271 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 46/241 (19%)
Query: 185 LLGPPASGKSTLLLAL--------AGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQT 236
L+GP GKSTLL +++ ++ G Y+ +D V+R + Q
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP-DVDPIEVRREVGMVFQY 93
Query: 237 DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGK 296
N P LT+ + + LN L ++ E+D ++ +
Sbjct: 94 PNPFPHLTIYDNVAIGVK--------------LNGL-----VKSKKELDERVEWAL---- 130
Query: 297 KHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG 356
K + D V L ND +SGGQ++R+ + K L MDE +
Sbjct: 131 KKAALWDEVKDRL-----------NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTAN 179
Query: 357 LDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVL 416
+D T +I + L F + + TI++ + P + + D + L G L+ GP +V
Sbjct: 180 IDPVGTAKIEELL--FELKKEYTIVL-VTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236
Query: 417 E 417
E
Sbjct: 237 E 237
|
Length = 253 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 58/293 (19%)
Query: 131 DVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPA 190
+ TG+RA+ A DV R +T F+ L+ +S V++PG L+G
Sbjct: 316 EKDTGTRAIE---RARGDVEFRNVT----FRYPGRDRPALDSISLVIEPGETVALVGRSG 368
Query: 191 SGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ---RTSAYISQTDNHIPELTVRE 247
SGKSTL+ + + SG I +G+ L ++ + R A +SQ D + T+
Sbjct: 369 SGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQ-DVVLFNDTIAN 424
Query: 248 TFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLK 307
+ Q EI+ + A+ D+V K
Sbjct: 425 NIAYGRTEQA----------------------DRAEIERALAAAYA--------QDFVDK 454
Query: 308 V-LGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIV 366
+ LGLD T +G + + +SGGQ++R+ ++ L +DE ++ LD+ + +
Sbjct: 455 LPLGLD----TPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQ 509
Query: 367 KCLRNFVHQMDATILMA--LLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLE 417
L + Q T+++A L T + D ++++ +G +V +G E+L
Sbjct: 510 AALER-LMQGRTTLVIAHRL-----STIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 4e-05
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 951 HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
H+FV L + LVG +S LS Q++R++IA ++ NP I+ +DE TS LD
Sbjct: 559 HDFVSA------LPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
Query: 1011 ARAAAIVMRTVRN 1023
++ +V +T+ N
Sbjct: 612 NKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-05
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 871 VGSSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVT 928
VG +G GKTT +LAG G ++ ++KIS Y K Q Y++ T
Sbjct: 371 VGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ--------YIK----PDYDGT 416
Query: 929 VEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLT 988
VE+ L S L K+ E+++ ++L+ L D V LS + +R+
Sbjct: 417 VEDLL-RSITDDLGSSYYKS-------EIIKPLQLERLLDKNV-----KDLSGGELQRVA 463
Query: 989 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
IA L + + +DEP++ LD V + +R
Sbjct: 464 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 20/165 (12%)
Query: 857 NVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGD-IKISGYPKEQS 908
NV G +TAL+G SG GK+T++ D++ G G + D + +
Sbjct: 31 NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLR 967
R G V Q P+ ++ E++ F A + E VE +R + D +
Sbjct: 91 EVRRRIGMVFQQPNPFPK-SIYENIAFGARI----NGYTGDMDELVERSLRKAAVWDECK 145
Query: 968 DALVGFPGSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
D L SG LS Q++RL IA + P +I MDEP S LD
Sbjct: 146 DKL----NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 58/193 (30%), Positives = 82/193 (42%), Gaps = 16/193 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK---TGGYIEGDIKISG---YPKE 906
Q L NVS +TAL+G SG GK+T + L IEG + I G Y +
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85
Query: 907 QST--FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL- 963
+ G V Q P +++ +++ + + +K VE +R L
Sbjct: 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALW 141
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
D D L P S LS Q++RL IA L P II DEPTS LD + A + + N
Sbjct: 142 DETSDRLKS-PALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199
Query: 1024 TVDTGRTVVCTIH 1036
+ T+V H
Sbjct: 200 -LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 51/220 (23%), Positives = 88/220 (40%), Gaps = 40/220 (18%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
LN +S + G ++G +GKSTLL A+AG L + SG I +G + + V
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVA 76
Query: 228 RTSAYISQT-----DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
+ + +++ PELT+ E A +G G ++ +N R
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAES-RGKKRGLSSALN--ERRRSS------- 126
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
+ ++ L L E + +D I +SGGQ++ ++ +
Sbjct: 127 ---------------------FRERLARLGLGLENRL-SDRIGLLSGGQRQALSLLMATL 164
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
P K L +DE + LD T +++ V + T LM
Sbjct: 165 HPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLM 204
|
Length = 263 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 31/174 (17%)
Query: 857 NVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQSTFARI 913
NV+ + +L+G +GAGKTT+ + L G + TGG I + I G P Q AR+
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQ--IARM 80
Query: 914 SGYVE--QNDIHSPQVTVEESLWFSANLRLS---------------KEVSKNQRHEFVEE 956
G V Q+ ++TV E+L + + +L E R E
Sbjct: 81 -GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 957 VMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ L+E + R A L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 140 RVGLLEHAN-RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 56/200 (28%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD----E 223
ILN++S ++ G L+ GP GKSTLL +A + + SG + + G + E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 224 FHVQRTSAYISQTDNHIPEL---TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRP 280
+ Q+ S Y +QT P L TV + F WQ RN +P
Sbjct: 78 IYRQQVS-YCAQT----PTLFGDTVYDNLIFP--WQ------------------IRNQQP 112
Query: 281 SPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEM 340
P F+ L+ L +T++ I +SGG+K+R++
Sbjct: 113 DP--AIFLDD---------------LERFALP---DTIL-TKNIAELSGGEKQRISLIRN 151
Query: 341 IVGPRKTLFMDEISTGLDSS 360
+ K L +DEI++ LD S
Sbjct: 152 LQFMPKVLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 54/256 (21%), Positives = 97/256 (37%), Gaps = 54/256 (21%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
L DVS + G + ++LGP GK+TLL +AG + S G+I NG +++ +R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76
Query: 229 TSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFM 288
+ Q + +P L V + F + +G
Sbjct: 77 --GVVFQNEALLPWLNVIDNVAFGLQLRG------------------------------- 103
Query: 289 KASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTL 348
+ + +L ++GL+ + I +SGG ++RV + + L
Sbjct: 104 ----IEKAQRREIAHQMLALVGLE---GA--EHKYIWQLSGGMRQRVGIARALAVEPQLL 154
Query: 349 FMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVY 408
+DE LD+ T Q+ + L + + +L+ T D+ + L L + +V
Sbjct: 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLI-------THDIEEALFLATR-LVVL 206
Query: 409 QGPRAEVLEFFESLGF 424
V+E L F
Sbjct: 207 SPGPGRVVERLP-LDF 221
|
Length = 259 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 173 VSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG-----YKLDEFHVQ 227
+S V+ G + L+GP +GKSTLL +AG L SG+I + G + E
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 228 RTSAYISQTDN 238
R AY+SQ
Sbjct: 71 R--AYLSQQQT 79
|
Length = 248 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 45/196 (22%)
Query: 177 VKPGRMTLLLGPPASGKSTLLLAL--AGKLDSSLKKSGNITYNGYKL-----DEFHVQRT 229
+ G++T L+GP GKST+L +L L G + ++G L D V+R
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 230 SAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMK 289
+ Q N P+ ++ E F AR G Y D++ L ER++R
Sbjct: 96 IGMVFQQPNPFPK-SIYENIAFGARING-------YTGDMDEL-VERSLR---------- 136
Query: 290 ASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLF 349
K D C + + N+ +SGGQ++R+ I + +
Sbjct: 137 -----------------KAAVWDECKDKL--NESGYSLSGGQQQRLCIARTIAIEPEVIL 177
Query: 350 MDEISTGLDSSTTFQI 365
MDE + LD +T +I
Sbjct: 178 MDEPCSALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 33/163 (20%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTF 910
++LS+VS PG + L+G +GAGK+TL+ V+ G G I+ + K+
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL---------- 67
Query: 911 ARISGYVEQN---DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
RI GYV Q D P +TV F LRL K + ++ V+ L
Sbjct: 68 -RI-GYVPQKLYLDTTLP-LTVNR---F---LRLRPGTKKED----ILPALKRVQAGHLI 114
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
DA + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 115 DAPM-----QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 6e-05
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 44/193 (22%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 912
+ L +S F LTAL+G SG GK+T + L + IE +IKI+G K
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIKITGEIK------- 67
Query: 913 ISGYVEQNDIHSPQVTVEE-------------SLWFSA------NLRLSKEVSKNQRHEF 953
E +I+ ++ + E FS L+++ K +
Sbjct: 68 ----FEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR 123
Query: 954 VEEVMRLVEL-----DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008
VEE ++ + D+L F G Q++R+ IA L P ++ +DEPTS
Sbjct: 124 VEESLKQAAIWKETKDNLDRNAQAFSGG------QQQRICIARALAVRPKVVLLDEPTSA 177
Query: 1009 LDARAAAIVMRTV 1021
LD +++ + T+
Sbjct: 178 LDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 8e-05
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK--SGNITYNG---- 218
+L +S V+ G + +++GP SGKSTLL L G L++ SG+IT +G
Sbjct: 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-----LEEPDSGSITVDGEDVG 67
Query: 219 YKLDEFHVQRTSAYISQTDNHIPELTVRE 247
K D ++R + Q N P LTV E
Sbjct: 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLE 96
|
Length = 240 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 8e-05
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP 904
L VS G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-05
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 40/219 (18%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-Q 227
IL ++ + G + ++GP SGKSTL +AG + G+I + G + + +
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEE 80
Query: 228 RTSAYI---SQTDNHIPELTVRETFDFAARWQGANEGF--AAYINDLNRLEKERNIRPSP 282
R I Q IP ++ N F AY N K + + P
Sbjct: 81 RAHLGIFLAFQYPIEIPGVS--------------NADFLRLAY----NSKRKFQGL---P 119
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
E+D + K LK++G+D + + ++ G SGG+KKR +M +
Sbjct: 120 ELDPLEFLEIINEK---------LKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMAL 167
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
+ +DE +GLD I + + + ++ IL
Sbjct: 168 LDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIIL 206
|
Length = 252 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 8e-05
Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 17/115 (14%)
Query: 136 SRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKST 195
S+ + + +R+ GL K L D+S + G ++G +GKST
Sbjct: 10 SKKFRIYHEKSYSLKKRLK-GLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKST 68
Query: 196 LLLALAG--KLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRET 248
LL +AG K SG + G + + I PELT RE
Sbjct: 69 LLKLIAGIYKPT-----SGKVKVTG---------KVAPLIELGAGFDPELTGREN 109
|
Length = 249 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-05
Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 29/192 (15%)
Query: 838 MPQAMRSQGIP-EKKLQLLSNVSGVFSPGVLTALVGSSGAGKT----TLMDVL-AG-RKT 890
MPQ + + I + L+ VS G + ALVG SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 891 GGYIEGDIKISGYPKEQSTF-ARISGYVEQ------NDIHSPQVTVEESLWFSANLRLSK 943
G + D G P R + Q N +H+ E+ L L K
Sbjct: 61 AGRVLLD----GKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETC-----LALGK 111
Query: 944 EVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMD 1003
+ + V L++ L +P +S +R+ IA+ L+ I D
Sbjct: 112 PADDAT----LTAALEAVGLENAARVLKLYPFE--MSGGMLQRMMIALALLCEAPFIIAD 165
Query: 1004 EPTSGLDARAAA 1015
EPT+ LD A A
Sbjct: 166 EPTTDLDVVAQA 177
|
Length = 254 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-05
Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 46/225 (20%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNIT-YNGYKLDEFHV 226
+L +VS + PG L+G +GKSTLL LAG+L+ SG +T G ++
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGLRV----- 68
Query: 227 QRTSAYISQTDNHIPELTVRETF--DFAARWQGANEGFAAY-------INDLNRLEKERN 277
Y+SQ PE TV + F + E AY L LE
Sbjct: 69 ----GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLE 124
Query: 278 IRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTT 337
++A +A + L LG + + +SGG ++RV
Sbjct: 125 ELDGWTLEA--RA------------EEALLGLGFP------DEDRPVSSLSGGWRRRVAL 164
Query: 338 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
++ L +DE + LD + ++ L +++ + T+++
Sbjct: 165 ARALLEEPDLLLLDEPTNHLDLES----IEWLEDYLKRYPGTVIV 205
|
Length = 530 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-05
Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 9/165 (5%)
Query: 1205 MVMGALYASCLFLGVNNASSVQPIVSIERT--VFYREKAAGMYSPIPYAVAQGLVEMPYV 1262
++G L + +G + + E+ + R +G+ SP+ Y + + L +
Sbjct: 96 YLLGLLLFLLILIGALIIAL---SIVEEKESRIKERLLVSGV-SPLKYLLGKILG---DL 148
Query: 1263 FVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISS 1322
V I I + L L+ L + G + L N A ++ S
Sbjct: 149 LVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVIS 208
Query: 1323 AFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLG 1367
L + G L P P++P + W + I P + G++ G
Sbjct: 209 ILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQP 387
SGG+++RV + L +DE ++ LD + ++++ LR + T++M L
Sbjct: 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL--- 155
Query: 388 PPETFDL------FDDLLLLSEGHLVYQG 410
DL D ++LL +G +V QG
Sbjct: 156 ----HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL-----M 382
SGGQK+RV + K L DE ++ LD TT I++ L++ ++ TI+ M
Sbjct: 143 SGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM 202
Query: 383 ALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEV 415
+++ + D + +L +G LV +G +EV
Sbjct: 203 EVVK------RICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL-----M 382
SGGQK+RV + K L DE ++ LD TT I+ LR+ ++ TI+ M
Sbjct: 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM 201
Query: 383 ALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVL 416
+++ + D + ++ +G +V +G EV
Sbjct: 202 EVVK------RICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
F +L ++S +K G LLG SGKSTLL L G L G IT
Sbjct: 8 FSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEIT---- 60
Query: 220 KLDEFHVQRTSAYISQT 236
LD V +S
Sbjct: 61 -LDGVPVSDLEKALSSL 76
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 56/281 (19%), Positives = 105/281 (37%), Gaps = 78/281 (27%)
Query: 159 IFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG 218
+ L ++ +S ++ G+ L+G SGKSTL LAL + S G I ++G
Sbjct: 292 FLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDG 347
Query: 219 YKLDEFHVQRTSAYISQTD----------NHIPELTVRETFDFAARWQGANEGFAAYIND 268
+D + + + P +TV + + EG +
Sbjct: 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLS--PRMTVGQIIE---------EGLRVHEPK 396
Query: 269 LNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR--- 325
L+ E+++ + I+A L+ +GLD R
Sbjct: 397 LSAAERDQRV-----IEA-------------------LEEVGLD-------PATRNRYPH 425
Query: 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNF--VHQM------- 376
SGGQ++R+ ++ + + +DE ++ LD S Q++ LR+ H +
Sbjct: 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485
Query: 377 DATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLE 417
D ++ AL ++++ +G +V QGP V
Sbjct: 486 DLAVVRALC----------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 17/110 (15%)
Query: 327 VSGGQKKRVT-TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALL 385
+SGGQK+RV G + V P K + +DE ++ LD + QI+K +R + + T++
Sbjct: 144 LSGGQKQRVAIAGILAVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI-- 200
Query: 386 QPPPETFDL-----FDDLLLLSEGHLVYQGPRAEVL---EFFESLGFQLP 427
T D+ D +L+L +G L+ QG E+ E + +G +P
Sbjct: 201 -----THDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIP 245
|
Length = 282 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 57/259 (22%), Positives = 98/259 (37%), Gaps = 50/259 (19%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
T+L+ +S G++T L+G SGKSTLL L S G I + L+ + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 228 ---RTSAYISQTDNHIPELTVRETFDFAAR-WQGANEGFAAYINDLNRLEKERNIRPSPE 283
R AY+ Q +TVRE W GA F A D ++E+
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGA--ADREKVEE--------- 130
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVG 343
+ L + + ++ +SGG+++R ++
Sbjct: 131 --------------------------AISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ 164
Query: 344 PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403
+ L +DE ++ LD + ++ + + T++ A+L D L+ L
Sbjct: 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVI-AVLHDINMAARYCDYLVALRG 223
Query: 404 GHLVYQGP-----RAEVLE 417
G ++ QG R E LE
Sbjct: 224 GEMIAQGTPAELMRGETLE 242
|
Length = 265 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQ 386
+SGGQ +RV ++ + L +DE + GLD ++++ + +HQ T+++ +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES-IHQSGQTVVL-VTH 202
Query: 387 PPPETFDLFDDLLLLSEGHLVYQGPRAEV---LEFFESLGFQLPPRKGVADFLQE 438
+ D D + LL +GH++ G ++V ++F ++ +P AD LQ+
Sbjct: 203 LMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
+LND+S + G+M LLGP SGK+TLL +AG L+ + SG+I ++G + H
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLH 70
|
Length = 353 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 39/204 (19%)
Query: 841 AMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKT-TLMDVLAGRKTGG--YIEGD 897
A R Q ++++VS G ALVG SG+GK+ T + +L + Y GD
Sbjct: 14 AFRQQQ---TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGD 70
Query: 898 IKISG----YPKEQSTFARISG----------YVEQNDIHSPQVTVEESLW--FSANLRL 941
I+ G + EQ T + G V N +H T+E+ L+ S + +
Sbjct: 71 IRFHGESLLHASEQ-TLRGVRGNKIAMIFQEPMVSLNPLH----TLEKQLYEVLSLHRGM 125
Query: 942 SKEVSKNQRHEFVEEVMRLVELDSLRDA---LVGFPGSSGLSTEQRKRLTIAVELVANPS 998
+E ++ E++ ++ +R A L +P LS +R+R+ IA+ L+ P
Sbjct: 126 RREAARG-------EILNCLDRVGIRQAAKRLTDYPHQ--LSGGERQRVMIAMALLTRPE 176
Query: 999 IIFMDEPTSGLDARAAAIVMRTVR 1022
++ DEPT+ LD A +++ +R
Sbjct: 177 LLIADEPTTALDVSVQAQILQLLR 200
|
Length = 529 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 47/276 (17%)
Query: 158 RIFKPKRHS-LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITY 216
+IF K + L L++VS + G ++G SGK+T + L L L +G I +
Sbjct: 10 KIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEW 66
Query: 217 NGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAA---RWQGANEGFAAYINDLNRLE 273
+K ++ + I + T + R G FA Y +L
Sbjct: 67 I-FKDEKNKKKTKEKEKVLEKLVI-QKTRFKKIKKIKEIRRRVGVVFQFAEY-----QLF 119
Query: 274 KERNIRPSPEIDAFMKASSVGGKKHSV---STDYVLKVLGLDLCSETVVGNDMIR---GV 327
++ + E D S+G K + Y ++++GLD + + R +
Sbjct: 120 EQ-----TIEKDIIFGPVSMGVSKEEAKKRAAKY-IELVGLDE-------SYLQRSPFEL 166
Query: 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQP 387
SGGQK+RV ++ L DE + GLD +I++ N +++ TI++
Sbjct: 167 SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDN-LNKQGKTIILV---- 221
Query: 388 PPETFDLFDDL------LLLSEGHLVYQGPRAEVLE 417
T DL + L + +G ++ G ++L
Sbjct: 222 ---THDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254
|
Length = 305 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 17/215 (7%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE---- 906
+ + +VS G + + G GAG+T L+ L G G + EG++ I+G P +
Sbjct: 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNP 330
Query: 907 -QSTFARISGYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHE---FVEEVMRL 960
Q+ A I+ E H P + V +++ S ++ + E + RL
Sbjct: 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL 390
Query: 961 VELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
++ A P LS +++ +A L+ NP ++ +DEPT G+D A + +
Sbjct: 391 ----KVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKL 445
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ G ++ + ++ D +L++ G
Sbjct: 446 INQLAQEGVAII-VVSSELAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-04
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 938 NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL-------VGFPGSSGLSTEQRKRLTIA 990
N++ KE + E V+ + +D ++L VG P LS Q++R+ IA
Sbjct: 1315 NIKFGKE---DATREDVKRACKFAAIDEFIESLPNKYDTNVG-PYGKSLSGGQKQRIAIA 1370
Query: 991 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1037
L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1371 RALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 38/211 (18%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
LS+++ G L A+VG +G GKT+L+ + G +++ I
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE--------------LSHAETSSVVIR 678
Query: 915 GYVEQNDIHSPQVTVEESLW-FSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
G V + PQV+ W F+A +R + + E E R +++ +L+ L
Sbjct: 679 GSVA----YVPQVS-----WIFNATVR--ENILFGSDFE-SERYWRAIDVTALQHDLDLL 726
Query: 974 PGSS---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
PG +S Q++R+++A + +N I D+P S LDA A V +
Sbjct: 727 PGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKD 786
Query: 1025 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
G+T V +Q + D ++L+ G
Sbjct: 787 ELKGKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 64/302 (21%), Positives = 109/302 (36%), Gaps = 69/302 (22%)
Query: 141 TLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLAL 200
+L+ RDV TG + +L +VS ++ G LLG GKSTL
Sbjct: 1 SLLEV-RDVTHTYRTGG--LFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTL---- 53
Query: 201 AGKLDSSLKK--SGNITYNG---YKLDEFH---VQRTSAYISQTDNHI--PELTVRETFD 250
+L L+K G +++ G Y+LD +R + Q P +TVR+
Sbjct: 54 -ARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG 112
Query: 251 FAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLG 310
R ++ L+ E++ I +L ++G
Sbjct: 113 EPLR----------HLTSLDESEQKARIA------------------------ELLDMVG 138
Query: 311 LDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLR 370
L + + + R +SGGQ +R+ + K + +DE + LD I++ LR
Sbjct: 139 LR----SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 371 NFVHQMDATILMALLQPPPETFDL------FDDLLLLSEGHLVYQGPRAEVLEFFESLGF 424
L T DL + ++ +G +V + A++L F G
Sbjct: 195 KLQQAFGTAYLFI-------THDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGR 247
Query: 425 QL 426
L
Sbjct: 248 NL 249
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 33/186 (17%)
Query: 842 MRSQGIPEKKLQLLSNVSGVFS-------------PGVLTALVGSSGAGKTTLMDVLAGR 888
M++ L ++S +S G + AL+G +GAGK+TLM ++AG
Sbjct: 1 MQTSDTTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI 60
Query: 889 KTGGYIEGDIKISGYPKEQSTFARISGY----VEQNDIHSPQVTVEESLWFSANLRLSK- 943
G ++I G P + T A+ V Q + P ++V+E++ F L K
Sbjct: 61 VPPD--SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF----GLPKR 114
Query: 944 EVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMD 1003
+ S + + + + ++LDS + L R+ + I L+ + I+ +D
Sbjct: 115 QASMQKMKQLLAALGCQLDLDSS---------AGSLEVADRQIVEILRGLMRDSRILILD 165
Query: 1004 EPTSGL 1009
EPT+ L
Sbjct: 166 EPTASL 171
|
Length = 510 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 867 LTALVGSSGAGKTTLM-------DVLAGRKTGGYIE-GDIKISGYPKEQSTFARISGYVE 918
+ A +G SG GK+TL+ D++ G K G + D I R G V
Sbjct: 48 IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVF 107
Query: 919 QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFPGSS 977
Q P+ ++ E++ F+ K E VE+ +R + + ++D L +
Sbjct: 108 QRPNPFPK-SIYENIAFAPR----ANGYKGNLDELVEDSLRRAAIWEEVKDKLK--EKGT 160
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
LS Q++RL IA + P ++ MDEP S LD
Sbjct: 161 ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
|
Length = 274 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 34/163 (20%), Positives = 49/163 (30%), Gaps = 51/163 (31%)
Query: 194 STLLLALAGKLDSSLKKSGNITYNGY---KLDEFHVQRTS-AYISQTDNHIPELTVRETF 249
STLL + G L + SG I +G L + R + Q PELTVRE
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 250 DFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVL 309
F R + A+ + + +
Sbjct: 58 FFGLRDKEADARAEEALERVGLPDFLDREPVG---------------------------- 89
Query: 310 GLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDE 352
+SGGQK+RV ++ K L +DE
Sbjct: 90 ----------------TLSGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 51/197 (25%), Positives = 78/197 (39%), Gaps = 40/197 (20%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
IL ++ V+PG + ++GP SGKSTL LAG+ D + G + + G L E
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELS-- 71
Query: 228 RTSAYISQTDNHIPELTVRE----TFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
PE E F + G + F ++ L R+ R
Sbjct: 72 -------------PEDRAGEGIFMAFQYPVEIPGVSNQF--FLQ--TALNAVRSYRGQEP 114
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGL--DLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
+D F + K + +L + DL + +V G SGG+KKR +M
Sbjct: 115 LDRFDFQDLMEEK---------IALLKMPEDLLTRSVN-----VGFSGGEKKRNDILQMA 160
Query: 342 VGPRKTLFMDEISTGLD 358
V + +DE +GLD
Sbjct: 161 VLEPELCILDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 4e-04
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STF 910
+L +S SP +VG +GAGK+++++ L + +G I I + +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLTDL 1308
Query: 911 ARISGYVEQNDIHSPQVTVEESLWFSANLRLSKE-VSKNQRHEFVEEVMRLVELDSLRDA 969
R+ + Q SP + FS +R + + S++ + E + R D +
Sbjct: 1309 RRVLSIIPQ----SP-------VLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRN 1357
Query: 970 LVG-----FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
G G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-04
Identities = 51/228 (22%), Positives = 89/228 (39%), Gaps = 58/228 (25%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
LL +VS G LT ++G++G+GK+TL+ L
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS-------------------------- 708
Query: 914 SGYVEQNDIHSPQVTVEESL-------W-FSANLRLSKEVSKNQRHEFVEEVMRLVELDS 965
Q +I +V E S+ W +A +R + + + + +R+ +L++
Sbjct: 709 -----QFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEA 763
Query: 966 LRDALVGFPGSSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
L GL TE Q+ R+++A + AN + +D+P S LDA
Sbjct: 764 DLAQL-----GGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVG 818
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
V+ G+T V HQ + + D ++ + GRV + G
Sbjct: 819 ERVVEECFLGALAGKTRVLATHQ--VHVVPRADYVVALGD-GRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 912
LL ++S +PG LVG +GAGK+TL+ ++AG EG + K
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGSTVK------- 64
Query: 913 ISGYVEQ 919
GY EQ
Sbjct: 65 -IGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATI 380
+D+ R SGG ++R+ +V + +FMDE + GLD S +++ LR V ++ +
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 381 LMALLQPPPETFDLF------DDLLLLSEGHLVYQGPRAEVLE 417
++ T DL D L+++ +G +V G VL+
Sbjct: 206 VIV-------THDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG 218
T L D+S VK G LLGP GK+TLL +AG L+ + +G I G
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LE--RQTAGTIYQGG 65
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 63/299 (21%), Positives = 117/299 (39%), Gaps = 66/299 (22%)
Query: 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNIT----YNGYK 220
+ L LN++S + ++ ++G SGKSTL+ G + S K G I Y G K
Sbjct: 37 NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS---KYGTIQVGDIYIGDK 93
Query: 221 LDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRP 280
+ + + S+ + EL R + F F Y + +EK+ P
Sbjct: 94 KNN--HELITNPYSKKIKNFKELRRRVSMVFQ---------FPEYQLFKDTIEKDIMFGP 142
Query: 281 ----SPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVT 336
+ +A A + L +GLD ++ + G+SGGQK+RV
Sbjct: 143 VALGVKKSEAKKLAK------------FYLNKMGLD---DSYLERSPF-GLSGGQKRRVA 186
Query: 337 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRN--------FV--HQMDATILMALLQ 386
++ + L DE + GLD ++++ + + FV H M+ + +A
Sbjct: 187 IAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVA--- 243
Query: 387 PPPETFDLFDDLLLLSEGHLVYQGPRAEVL---EFFESLGFQLPPRKGVADFLQEVTSK 442
D+++++ +G ++ G E+ S Q+P V + ++ K
Sbjct: 244 ---------DEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR---VIQVINDLIKK 290
|
Length = 320 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 48/219 (21%)
Query: 155 TGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLAL--AGKLDSSLKKSG 212
L ++ ++H+L D++ + R+T L+GP GKSTLL L + +G
Sbjct: 10 KNLNLWYGEKHAL---YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITG 66
Query: 213 NITYNGYKL-----DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYIN 267
+I YNG + D ++R + Q N P+ ++ E + R G
Sbjct: 67 DILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG---------- 115
Query: 268 DLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV 327
+ +D ++ S K + D V L +D +
Sbjct: 116 ----------EKNKKTLDTIVEKS----LKGAALWDEVKDRL-----------HDSALSL 150
Query: 328 SGGQKKRVTTGEMI-VGPRKTLFMDEISTGLDSSTTFQI 365
SGGQ++R+ + V P + + MDE + LD T +I
Sbjct: 151 SGGQQQRLCIARTLAVNP-EVILMDEPCSALDPIATAKI 188
|
Length = 253 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 59/259 (22%), Positives = 96/259 (37%), Gaps = 61/259 (23%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--- 224
T L +SG V+ G + L+GP +GKSTLL +AG SG+I + G L+ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSAT 68
Query: 225 HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+ R AY+SQ + V W Y+ L++ +K R + +
Sbjct: 69 ELARHRAYLSQQQTPPFAMPV---------WH--------YLT-LHQPDKTR----TELL 106
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI--V 342
+ A ++ K +SGG+ +RV ++ +
Sbjct: 107 NDVAGALALDDKLGR-----------------------STNQLSGGEWQRVRLAAVVLQI 143
Query: 343 GPR-----KTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397
P + L +DE LD + + + L Q A ++ + T
Sbjct: 144 TPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS--HDLNHTLRHAHR 201
Query: 398 LLLLSEGHLVYQGPRAEVL 416
LL G L+ G R EVL
Sbjct: 202 AWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 45/252 (17%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
L +S ++ G ++GP SGKSTL + G SG++ +G L ++ +
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG---IWPPTSGSVRLDGADLKQWDRE 388
Query: 228 ---RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+ Y+ Q D + TV E AR+ N P I
Sbjct: 389 TFGKHIGYLPQ-DVELFPGTVAENI---ARF-------------------GENADPEKII 425
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+A K + V H + +L L +TV+G +SGGQ++R+ + G
Sbjct: 426 EA-AKLAGV----HEL-------ILRLPDGYDTVIGPGGA-TLSGGQRQRIALARALYGD 472
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
K + +DE ++ LD + ++ + +++ P D +L+L +G
Sbjct: 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVIT---HRPSLLGCVDKILVLQDG 529
Query: 405 HLVYQGPRAEVL 416
+ G R EVL
Sbjct: 530 RIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 7e-04
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 867 LTALVGSSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIH 923
+TA +G SG GK+T + + L G EG+I G + + +
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 924 SPQVTVEESLW--FSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFPGSSGLS 980
E S++ + R + + + VE+ ++ L D ++D L + LS
Sbjct: 170 QKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD--KAGNALS 227
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 7e-04
Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 33/222 (14%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEG-DI-KISGYPKEQS 908
+ + S G + ++G SG+GK+T++ +L T G I+G DI KIS +
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
+I+ V Q+ P +TV ++ F L ++ +R E + +R V L++
Sbjct: 104 RRKKIA-MVFQSFALMPHMTVLDNTAFGMEL---AGINAEERREKALDALRQVGLENYAH 159
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VR 1022
+P LS R+R+ +A L NP I+ MDE S LD ++RT V+
Sbjct: 160 ---SYPDE--LSGGMRQRVGLARALAINPDILLMDEAFSALDP-----LIRTEMQDELVK 209
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYG 1061
RT+V H D+ EA D + +M+ G V G
Sbjct: 210 LQAKHQRTIVFISH----DLDEAMRIGDRIAIMQNGEVVQVG 247
|
Length = 400 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 35/198 (17%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKT----TLMDVLAGRKTGGYIEGD------- 897
++K+ + N+S G A+VG SG+GK+ LM +L + GG ++ D
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL--EQAGGLVQCDKMLLRRR 83
Query: 898 ----IKISGYPKEQSTFARISG----YVEQNDIHS--PQVTVEESLWFSANLRLSKEVSK 947
I++S + + + G + Q + S P TV E + + ++RL + S
Sbjct: 84 SRQVIELS--EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQI--AESIRLHQGAS- 138
Query: 948 NQRHEFVEEVMRLVELDSLRDA---LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDE 1004
R E + E R+++ + +A L +P LS R+R+ IA+ L P+++ DE
Sbjct: 139 --REEAMVEAKRMLDQVRIPEAQTILSRYPHQ--LSGGMRQRVMIAMALSCRPAVLIADE 194
Query: 1005 PTSGLDARAAAIVMRTVR 1022
PT+ LD A +++ ++
Sbjct: 195 PTTALDVTIQAQILQLIK 212
|
Length = 623 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 23/166 (13%)
Query: 857 NVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGR---KTGGYIEGDIKISGYPKE 906
N S G + L+G SG+GK+TL+ V G K G +G + ++
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDG---DGSVDVANCDAA 98
Query: 907 QSTFARIS--GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD 964
R V Q P TVEE++ F + + + K +R + V+E + LV L
Sbjct: 99 TLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEM---QGMPKAERRKRVDEQLELVGLA 155
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
D G LS ++R+ +A I+ MDEP S LD
Sbjct: 156 QWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 24/162 (14%)
Query: 865 GVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIE--GDIKISGYPKEQSTFARISG 915
+T +G SG GK+T++ D++ G + G++ G + G + R G
Sbjct: 34 NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQ-DVYGKGVDPVVVRRYIG 92
Query: 916 YVEQNDIHSP-QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGF 973
V Q +P +++ +++ F LRL++ K + V+ ++ L D ++D L
Sbjct: 93 MVFQQP--NPFSMSIFDNVAFG--LRLNR--YKGDLGDRVKHALQGAALWDEVKDKL--- 143
Query: 974 PGSSGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
SGLS Q++RL IA + P ++ +DEP S LD A
Sbjct: 144 -KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIA 184
|
Length = 261 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 8e-04
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 45/211 (21%)
Query: 164 RHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE 223
R+ T L D S V G + L+G SGKSTL AL G + + SG I+ G +
Sbjct: 17 RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQ 73
Query: 224 FHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI----R 279
+ AY+ Q+ E D++ F + D+ + + ++ R
Sbjct: 74 ALQKNLVAYVPQS----------EEVDWS---------FPVLVEDVVMMGRYGHMGWLRR 114
Query: 280 PSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE 339
+ + T + +V ++ + I +SGGQKKRV
Sbjct: 115 AKK-------------RDRQIVTAALARVDMVEF------RHRQIGELSGGQKKRVFLAR 155
Query: 340 MIVGPRKTLFMDEISTGLDSSTTFQIVKCLR 370
I + + +DE TG+D T +I+ LR
Sbjct: 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLR 186
|
Length = 272 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 56/251 (22%), Positives = 91/251 (36%), Gaps = 50/251 (19%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRT 229
L V+ ++ G L+G GKSTLL ++G + SG + G ++ E R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG---LAQPTSGGVILEGKQITEPGPDRM 57
Query: 230 SAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMK 289
+ Q + +P LTVRE A + DL++ E+ +
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVD---------RVLPDLSKSERRAIVEEH-------- 98
Query: 290 ASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLF 349
+ L T + +SGG K+RV + K L
Sbjct: 99 ---------------------IALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLL 137
Query: 350 MDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQ 409
+DE LD+ T + + L + T+LM T D+ + LLL ++
Sbjct: 138 LDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-------THDVDEALLLSDRVVMLTN 190
Query: 410 GPRAEVLEFFE 420
GP A + + E
Sbjct: 191 GPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-04
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 34/181 (18%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GGYI--EGDIKISGY----PK 905
LL N LVG +GAGK+TLM +L G G I E D+ ++ P+
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77
Query: 906 --EQSTFARIS-GYVEQNDI----H--SPQVTVEESLWFSANL-RLSK--EVSKN----Q 949
E + + ++ G EQ + H S V + S NL L+K E + Q
Sbjct: 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPS---EKNLNELAKLQEQLDHHNLWQ 134
Query: 950 RHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
+ EV+ + LD DA + S LS ++ + LV+NP ++ +DEPT+ L
Sbjct: 135 LENRINEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHL 187
Query: 1010 D 1010
D
Sbjct: 188 D 188
|
Length = 635 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 25/112 (22%)
Query: 316 ETVVGNDMIRGV--SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRN-- 371
+T+VG RG+ SGG+K+RV I+ L +DE ++ LD+ T +I LR+
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184
Query: 372 ------FVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLE 417
+ +TI+ A D +++L +G +V +G E+L
Sbjct: 185 KGRTTIVIAHRLSTIVNA------------DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 73/290 (25%), Positives = 122/290 (42%), Gaps = 68/290 (23%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS----LKKSGNITYNGYKLDEFH 225
L ++ + G M LLGP +GKSTL L G L + L K I Y+ L E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE-- 75
Query: 226 VQRTSAYISQT-DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
V++T + Q D+ + TV E F N G L++ E E+ ++ +
Sbjct: 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGP----LNLG-------LSKEEVEKRVKEA--- 121
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
LK +G++ + +SGGQKKRV ++
Sbjct: 122 ---------------------LKAVGMEGFENKPPHH-----LSGGQKKRVAIAGILAMK 155
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL------FDDL 398
+ + +DE ++GLD QI+K L + +++ TI+++ T D+ D +
Sbjct: 156 PEIIVLDEPTSGLDPMGASQIMKLLYD-LNKEGITIIIS-------THDVDLVPVYADKV 207
Query: 399 LLLSEGHLVYQGPRAEVL---EFFESLGFQLPPRKGVADFLQEVTSKKDQ 445
++S+G ++ +G EV E +LP VA L E+ +K+D
Sbjct: 208 YVMSDGKIIKEGTPKEVFSDIETIRKANLRLPR---VAH-LIEILNKEDN 253
|
Length = 275 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 46/192 (23%), Positives = 67/192 (34%), Gaps = 44/192 (22%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV- 226
L+ VS +K G LLGP GK+TLL +AG + SG I +G +
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 227 QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDA 286
+R + Q P LTV E F R + + ++ E
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK------AEIKERVAE----------- 113
Query: 287 FMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRK 346
L ++ L+ N +SGGQ++RV +V K
Sbjct: 114 ------------------ALDLVQLE-----GYANRKPSQLSGGQQQRVAIARALVNEPK 150
Query: 347 TLFMDEISTGLD 358
L +DE LD
Sbjct: 151 VLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 57/261 (21%), Positives = 88/261 (33%), Gaps = 63/261 (24%)
Query: 185 LLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAY------ISQTDN 238
LLGP GK+TLL LAG SG+I LD V + + Q+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSI-----MLDGEDVTNVPPHLRHINMVFQSYA 52
Query: 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKH 298
P +TV E F + + P EI + +
Sbjct: 53 LFPHMTVEENVAFGLKMRKV---------------------PRAEIKPRVLEA------- 84
Query: 299 SVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 358
L L + +SGGQ++RV +V K L +DE + LD
Sbjct: 85 ------------LRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALD 132
Query: 359 SSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEF 418
Q+ L+ Q+ T + + E + D + ++ +G + G E+ E
Sbjct: 133 KKLRDQMQLELKTIQEQLGITFVF-VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191
Query: 419 FESLGFQLPPRKGVADFLQEV 439
P VA F+ E+
Sbjct: 192 --------PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 45/204 (22%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLAL--AGKLDSSLKKSGNITYNG-----YKLD 222
L +++ + ++T L+GP GKSTLL +L L ++ G + ++G K+D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
++R + Q N P +++ + + R G I+
Sbjct: 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--------------------IKDKK 115
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGL-DLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
E+D ++ S LK L D + + + + G+SGGQ++R+ +
Sbjct: 116 ELDEIVEES--------------LKKAALWDEVKDRLHDSAL--GLSGGQQQRLCIARAL 159
Query: 342 VGPRKTLFMDEISTGLDSSTTFQI 365
+ L +DE ++ LD T +I
Sbjct: 160 AVEPEVLLLDEPTSALDPIATGKI 183
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 52/218 (23%), Positives = 80/218 (36%), Gaps = 49/218 (22%)
Query: 177 VKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQT 236
V G L+ G +GK+TLL LAG L +SG I +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHV---ESGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 237 DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGK 296
H+P L DL+ LE N+ F+ + G+
Sbjct: 89 --HLPGLK----------------------ADLSTLE---NLH-------FLCG--LHGR 112
Query: 297 KHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG 356
+ L ++GL +T+V R +S GQKKR+ + + P +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 357 LDSSTTFQIVKCLRNFVHQMDATILM---ALLQPPPET 391
LD + + + + A ++ A PP T
Sbjct: 168 LDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT 205
|
Length = 214 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 56/256 (21%), Positives = 109/256 (42%), Gaps = 54/256 (21%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG--YK-LDEFH 225
IL D+S + G + ++GP +GKSTL+ + +D + G+I +G K +D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 226 VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
++R + Q H+ E TV++ NI P
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKD-----------------------------NIEYGP--- 101
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
+ G+K +V +Y L ++GL+ T ++ SGG+ +RV+ +
Sbjct: 102 ------MLKGEK-NVDVEYYLSIVGLNKEYATRDVKNL----SGGEAQRVSIARTLANNP 150
Query: 346 KTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405
+ L +DE ++ LD ++T I + + ++M+ T++ + + + D L++G
Sbjct: 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIW-ITHNMEQAKRIGDYTAFLNKGI 209
Query: 406 LVYQGPRAEVLEFFES 421
LV + +FF +
Sbjct: 210 LVEYA---KTYDFFTN 222
|
Length = 241 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA-- 911
+L ++S G L+G +G+GK+TL+ L + EG+I+I G T
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTW 1290
Query: 912 -RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
+ G + PQ S F NL ++ S EE+ ++ E L+ +
Sbjct: 1291 RKAFGVI-------PQKVFIFSGTFRKNLDPYEQWSD-------EEIWKVAEEVGLKSVI 1336
Query: 971 VGFP---------GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
FP G LS ++ + +A +++ I+ +DEP++ LD I+ +T+
Sbjct: 1337 EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396
Query: 1022 RNTVDTGRTVVC 1033
+ + ++
Sbjct: 1397 KQSFSNCTVILS 1408
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L N+S G L A+ GS+G+GK++L+ ++ G EG IK SG RI
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS--EGKIKHSG---------RI 489
Query: 914 SGYVEQNDIHSPQV------TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
S SPQ T+++++ F + + S + + E++ E +
Sbjct: 490 S--------FSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPE----K 537
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
D V G LS QR R+++A + + + +D P + LD
Sbjct: 538 DKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 55/227 (24%)
Query: 844 SQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS-G 902
S+ +P KK ++L ++S F PG ++G +GAGK+TL+ ++AG G+ + + G
Sbjct: 11 SKVVPPKK-EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPG 67
Query: 903 YPKEQSTFARISGYVEQNDIHSPQVTV----EESLWFSANL--RLSKEVSKN------QR 950
++ GY+ Q P TV EE + + R + E+S
Sbjct: 68 I--------KV-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFN-EISAKFAEPDADM 117
Query: 951 HEFVEEVMRLVE-----------------LDSLR----DALVGFPGSSGLSTEQRKRLTI 989
+ E L E +D+LR DA V + LS +R+R+ +
Sbjct: 118 DALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADV-----TKLSGGERRRVAL 172
Query: 990 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
L++ P ++ +DEPT+ LDA + A + + ++ G TVV H
Sbjct: 173 CRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 328 SGGQKKRVTTGE-MIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM---- 382
SGGQ++R+ +I P K L +DE ++ LD S QI+ L + T L
Sbjct: 143 SGGQRQRIAIARALIPEP-KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201
Query: 383 -ALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFF 419
AL++ + D + ++ G +V GP E+L
Sbjct: 202 LALVE------HMCDRIAVMDNGQIVEIGPTEELLSHP 233
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK--SGNITYNGYKLD 222
+L + VK G + +++GP SGKSTLL + L++ SG I +G KL
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL-----LEEPDSGTIIIDGLKLT 65
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY---KLDEFHV 226
LND+S V PG + +++GP +GK+T++ + GK G++ + G L E +
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQI 74
Query: 227 QRTSAYIS---QTDNHIPELTVRETFDFAARWQGANEG-FAAYINDLNRLEKER 276
R A I Q LTV E + A ++ FA+ L+ EK+R
Sbjct: 75 AR--AGIGRKFQKPTVFENLTVFENLELALP---RDKSVFASLFFRLSAEEKDR 123
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
I+ +S GQKKRV +V + L +DE + GLD + Q++ +R V Q + I+ +
Sbjct: 134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISS 193
Query: 384 LLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVL---EFFESLGFQLP 427
+++ D + +L +G ++ G EV E E G P
Sbjct: 194 --HDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 46/205 (22%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLL--LALAGKLDSSLKKSGNITYNG-----YKL 221
L D++ + ++T L+GP GKSTLL L L + G + +G K+
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 222 DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLN-RLEKERNIRP 280
D ++R + Q N P +++ + + R G + +L+ +E
Sbjct: 82 DVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD------KELDEIVES------ 128
Query: 281 SPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEM 340
+ KA+ K L L L SGGQ++R+
Sbjct: 129 -----SLKKAALWDEVKDR------LHKSALGL--------------SGGQQQRLCIARA 163
Query: 341 IVGPRKTLFMDEISTGLDSSTTFQI 365
+ + L MDE ++ LD +T +I
Sbjct: 164 LAVKPEVLLMDEPTSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 47/205 (22%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLAL--AGKLDSSLKKSGNITYNGYKL-----D 222
LND++ + ++T L+GP GKST L L L S++K G + +G + D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEK--ERNIRP 280
+++ + Q N P +++ + + R G I D L+K E ++
Sbjct: 80 VVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--------IKDKKELDKIVEWALKK 130
Query: 281 SPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEM 340
+ D V D L L SGGQ++R+
Sbjct: 131 AALWD-------------EVKDDLKKSALKL----------------SGGQQQRLCIART 161
Query: 341 IVGPRKTLFMDEISTGLDSSTTFQI 365
I + MDE ++ LD +T +I
Sbjct: 162 IAVKPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 177 VKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-----QRTSA 231
V+ G +LGP +GKSTLL +AG L SG++T NG + H +R +
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLTLNG----QDHTTTPPSRRPVS 74
Query: 232 YISQTDNHIPELTVRE 247
+ Q +N LTV +
Sbjct: 75 MLFQENNLFSHLTVAQ 90
|
Length = 232 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 328 SGGQKKRV-TTGEMIVGPRKTLF-MDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
SGG+ +RV E+ P TLF +DE STGL Q+++ ++ + + IL
Sbjct: 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 29/163 (17%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG RI
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS--EGKIKHSG---------RI 100
Query: 914 SGYVEQNDIHSPQV------TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
S S Q T++E++ F + + S + + E++ + E +
Sbjct: 101 S--------FSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPE----K 148
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
D V G LS QR R+++A + + + +D P LD
Sbjct: 149 DNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 859 SGVFSPGVLTALVGSSGAGKTTLMDVLAGR---KTGGYIEGDIK 899
+ S G AL+GSSG GK+TL++ L G KTG E D K
Sbjct: 189 AAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSK 232
|
Length = 356 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 64/288 (22%), Positives = 121/288 (42%), Gaps = 45/288 (15%)
Query: 779 PLRKSQVVIDDKEENSVKMAK-QQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVD 837
PL +VI + SV + + + F + P+S +++ I P + ++T HN +
Sbjct: 589 PLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRT-IKPGEGNSITVHNATF--- 644
Query: 838 MPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 897
++ +P L+ ++ G L A+VG G GK++L+ L +EG
Sbjct: 645 ----TWARDLPPT----LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGH 694
Query: 898 IKISG---YPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFV 954
+ + G Y +Q+ QND ++ E++ F K +++ + +
Sbjct: 695 VHMKGSVAYVPQQAWI--------QND------SLRENILFG------KALNEKYYQQVL 734
Query: 955 EEVMRLVELDSLRDALVGFPGSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
E L +L+ L G G LS Q++R+++A + +N I D+P S +DA
Sbjct: 735 EACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 794
Query: 1013 AAAIVMRTVRNT--VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058
+ V V +T + H I D +++M GG++
Sbjct: 795 VGKHIFEHVIGPEGVLKNKTRILVTH--GISYLPQVDVIIVMS-GGKI 839
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 48/216 (22%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL--DEFHVQ 227
++ V+ V+ G + LGP +GK+T + L L + SG GY + + V+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 228 RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287
R+ + Q + +LT RE + R G L + E E
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYG-----------LPKDEAEERA--------- 105
Query: 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG-EMIVGPRK 346
+ +L++ L + + SGG ++R+ +I P
Sbjct: 106 ---------------EELLELFEL-----GEAADRPVGTYSGGMRRRLDIAASLIHQPD- 144
Query: 347 TLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
LF+DE +TGLD T I +R + TIL+
Sbjct: 145 VLFLDEPTTGLDPRTRRAIWDYIRALK-EEGVTILL 179
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 52/236 (22%), Positives = 93/236 (39%), Gaps = 46/236 (19%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
L D++ ++ G + ++LGP GK+TLL +AG + G+IT +G ++ +R
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72
Query: 229 TSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFM 288
+ Q + +P V++ F + G + + RLE +
Sbjct: 73 --GVVFQNEGLLPWRNVQDNVAFGLQLAG--------VEKMQRLEIAHQM---------- 112
Query: 289 KASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTL 348
LK +GL+ I +SGGQ++RV + + L
Sbjct: 113 -----------------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLL 150
Query: 349 FMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
+DE LD+ T Q+ L + +L+ + E + +L+LLS G
Sbjct: 151 LLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL-ITHDIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 45/209 (21%)
Query: 177 VKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL--DEFHVQRTSAYIS 234
V+PG LLG +GK+T L G D+++ SG+ T G + + V + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTTVT-SGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 235 QTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVG 294
Q D LT RE AR +G P+ EI+
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV---------------------PAEEIEKV------- 2050
Query: 295 GKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 354
++ ++ LGL L ++ + G SGG K++++T ++G + +DE +
Sbjct: 2051 -------ANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPT 2098
Query: 355 TGLDSSTTFQIVKCLRNFVHQMDATILMA 383
TG+D + + + + + A +L +
Sbjct: 2099 TGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 54/223 (24%), Positives = 86/223 (38%), Gaps = 57/223 (25%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ- 227
+L ++S +KPG ++G SGKS+LLLAL ++ S SG+I +G + + +
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHD 75
Query: 228 -RTS-AYISQTDNHIPELTVRETFDF------AARWQGANEGFAAYINDLNRLEKERNIR 279
R+ + I Q D + T+R D WQ LE+
Sbjct: 76 LRSRISIIPQ-DPVLFSGTIRSNLDPFGEYSDEELWQA--------------LER----- 115
Query: 280 PSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE 339
VG K+ S GLD G ++ S GQ++ +
Sbjct: 116 -------------VGLKEFVES-----LPGGLDT-VVEEGGENL----SVGQRQLLCLAR 152
Query: 340 MIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
++ K L +DE + +D T I K +R D T+L
Sbjct: 153 ALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLT 193
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 49/247 (19%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK--SGNITYNGYKLDEFH 225
T++++++ +K G M LLGP GK+T+L +AG L+K G I +G +
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-----LEKPTEGQIFIDGEDVTHRS 74
Query: 226 VQ-RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+Q R + Q+ P +++ E + + G P E
Sbjct: 75 IQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---------------------VPKEER 113
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+K + L+++ L + V D I SGGQ++RV ++
Sbjct: 114 KQRVKEA--------------LELVDLAGFEDRYV--DQI---SGGQQQRVALARALILK 154
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
K L DE + LD++ + + +R Q + T L + E F + D ++++++G
Sbjct: 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKG 213
Query: 405 HLVYQGP 411
++ G
Sbjct: 214 KIMQIGS 220
|
Length = 351 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 37/206 (17%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLAL--------AGKLDSSLKKSGNITY-NGYK 220
L VS + +T L+GP GKST L L A ++D S++ G Y +G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 221 LDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQG-ANEGFAAYINDLNRLEKERNIR 279
L E +++ + Q+ N P+ ++RE + R G N G A + L R +K+
Sbjct: 121 LVE--LRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARL--LGRDDKDAE-- 173
Query: 280 PSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE 339
D ++ S + + D V L D G+SGGQ++R+
Sbjct: 174 -----DELVERS----LRQAALWDEVNDRLD-----------DNALGLSGGQQQRLCIAR 213
Query: 340 MIVGPRKTLFMDEISTGLDSSTTFQI 365
+ + + MDE ++ LD T +I
Sbjct: 214 CLAVDPEVILMDEPASALDPIATSKI 239
|
Length = 305 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 68/312 (21%), Positives = 129/312 (41%), Gaps = 60/312 (19%)
Query: 737 YNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVK 796
+ V+ HSL +G VG + YSL + + + + + V ++ +E S
Sbjct: 1209 FAVISRHSLSAGL------VGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSET 1262
Query: 797 MAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHN--VNYYVDMPQAMRSQGIPEKKLQL 854
+ ++I T+ P +G + F N + Y D+ +R
Sbjct: 1263 EKEAPWQIQETAPPSGWPPRGRV--------EFRNYCLRYREDLDLVLR----------- 1303
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
+++ G +VG +GAGK++L L + EG+I I G A+I
Sbjct: 1304 --HINVTIHGGEKVGIVGRTGAGKSSL--TLGLFRINESAEGEIIIDGL-----NIAKIG 1354
Query: 915 GYVEQNDIHSPQVTV--EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
+D+ ++T+ ++ + FS +LR++ + +Q + EEV +EL L+ +
Sbjct: 1355 ----LHDLRF-KITIIPQDPVLFSGSLRMNLD-PFSQYSD--EEVWWALELAHLKTFVSA 1406
Query: 973 FP---------GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
P G LS QR+ + +A L+ I+ +DE T+ +D ++ T+R
Sbjct: 1407 LPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466
Query: 1024 TVDTGRTVVCTI 1035
+ CT+
Sbjct: 1467 QFED-----CTV 1473
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 26/165 (15%)
Query: 870 LVGSSGAGKT----TLMDVLA--GRKTGGYIEGDIKISGYPKEQSTFAR---ISGYVEQN 920
+VG SG+GK+ LM +LA GR G +I P+++ R IS + Q+
Sbjct: 47 IVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQIS-MIFQD 105
Query: 921 DIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRL---VELDSLRDALVGFPG 975
+ S P + V E L L L K +SK E EE +R+ V++ R + +P
Sbjct: 106 PMTSLNPYMRVGEQL--MEVLMLHKGMSK---AEAFEESVRMLDAVKMPEARKRMKMYPH 160
Query: 976 --SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
S G+ R+R+ IA+ L+ P ++ DEPT+ LD A +M
Sbjct: 161 EFSGGM----RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIM 201
|
Length = 330 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 46/175 (26%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
LSN++ G L A+VGS+G GKT+L+ + G P I
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE--------------LPPRSDASVVIR 678
Query: 915 GYVEQNDIHSPQV------TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
G V + PQV TV +++ F + R+E R +++ +L+
Sbjct: 679 GTVA----YVPQVSWIFNATVRDNILFGSPFDPE-------RYE------RAIDVTALQH 721
Query: 969 ALVGFPGSS---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
L PG +S Q++R+++A + +N + D+P S LDA
Sbjct: 722 DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVG 776
|
Length = 1622 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQM 376
TV+ N + G+SGGQ++RV + L +DE ++ LD T ++ L++ Q+
Sbjct: 92 TVLENIAL-GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQL 150
Query: 377 DATILMALLQPPPETFDLF------DDLLLLSEGH 405
T+++ T DL D +++L +G
Sbjct: 151 GITVVLV-------THDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
+SGG ++RV + K L DE +T LD +T QI+ L++ ++ +L
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLF 210
|
Length = 539 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 58/273 (21%), Positives = 102/273 (37%), Gaps = 50/273 (18%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYN 217
+ K +N+++ + G +L+GP SGK+T + + ++ + SG I +
Sbjct: 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFID 61
Query: 218 G---YKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEK 274
G + D ++R Y+ Q P +TV E I + +L K
Sbjct: 62 GEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN-----------------IALVPKLLK 104
Query: 275 ERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKR 334
P +I D +L ++GLD + +SGGQ++R
Sbjct: 105 W----PKEKIRE--------------RADELLALVGLD---PAEFADRYPHELSGGQQQR 143
Query: 335 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL 394
V + L MDE LD T Q+ + + ++ TI+ + E F L
Sbjct: 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVF-VTHDIDEAFRL 202
Query: 395 FDDLLLLSEGHLVYQGPRAEVL-----EFFESL 422
D + ++ G +V G E+L +F
Sbjct: 203 ADRIAIMKNGEIVQVGTPDEILRSPANDFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-- 226
+L++VS + G M ++G SGKSTLL L G LD+ SG++ +NG + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTP--TSGDVIFNGQPMSKLSSAA 80
Query: 227 -----QRTSAYISQTDNHIPELTVRE 247
+ +I Q + +P+ T E
Sbjct: 81 KAELRNQKLGFIYQFHHLLPDFTALE 106
|
Length = 233 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.004
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 179 PGRMTLLLGPPASGKSTLLLALAGKLDSSLKK 210
PG + L++GPP SGK+TL ALA +L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGG 32
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKL--DSSLKKSGNITYNGY 219
+L D+S + PG L+G +GKSTLL +AG+L D + G+ GY
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGY 67
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.004
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 60/203 (29%)
Query: 847 IPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS-GYPK 905
+P KK Q+L ++S F PG ++G +GAGK+TL+ ++AG EG+ + + G
Sbjct: 16 VPPKK-QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPGI-- 70
Query: 906 EQSTFARISGYVEQNDIHSPQV--------TVEESLWFSANL--RLSKEVSKN------Q 949
++ GY+ Q PQ+ VEE + R + E+
Sbjct: 71 ------KV-GYLPQ----EPQLDPEKTVRENVEEGVAEVKAALDRFN-EIYAAYAEPDAD 118
Query: 950 RHEFVEEVMRLVE---------LDS--------LR----DALVGFPGSSGLSTEQRKRLT 988
E L E LDS LR DA V + LS +R+R+
Sbjct: 119 FDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKV-----TKLSGGERRRVA 173
Query: 989 IAVELVANPSIIFMDEPTSGLDA 1011
+ L+ P ++ +DEPT+ LDA
Sbjct: 174 LCRLLLEKPDMLLLDEPTNHLDA 196
|
Length = 556 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1427 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-242 Score=2232.78 Aligned_cols=1340 Identities=52% Similarity=0.878 Sum_probs=1245.7
Q ss_pred ccchhhhhHHHHhhCCCcchhhhhhcccCCCCCCCCcceeeecccccchhhhHHHHHHhhhcCccCHHHHHHHHHHHHhh
Q 000555 32 EEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGEAKTETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDR 111 (1427)
Q Consensus 32 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1427)
+||||+|||||+||||+++| +.+.+.. + + ++|+.+++..|+...+++.....++|+++++.++++|.++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~--~-~-----~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~ 80 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIF--E-S-----EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDR 80 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhc--c-C-----cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCc
Confidence 44999999999999999999 4443311 0 1 3899999999999999999999999999999999999998
Q ss_pred cCCCCCccEEEEeeeEEEEEEecCCCcCCchhHHhHHHHHHHhhhccccCCccccceeeeCeeEEEeCCeEEEEEcCCCC
Q 000555 112 VGIEVPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPAS 191 (1427)
Q Consensus 112 ~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 191 (1427)
+ ++|.++++++++.+++++..+ ||+.|...+.++..+...+.. ++...+||+|+|+.++|||+++++|||||
T Consensus 81 ~--~~p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgs 152 (1391)
T KOG0065|consen 81 V--ELPTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGS 152 (1391)
T ss_pred c--cCCceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCC
Confidence 7 899999999999999988765 899999888888776555443 45567899999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhH
Q 000555 192 GKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNR 271 (1427)
Q Consensus 192 GKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ 271 (1427)
||||||++|+|.++......|+|+|||++.+++..++.++|++|+|.|+|.+||||+|+|+++|+++ +.+ .++..|
T Consensus 153 G~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~--~~r--~~~~~R 228 (1391)
T KOG0065|consen 153 GKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGP--GSR--YDEVSR 228 (1391)
T ss_pred chHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCC--ccc--cccccH
Confidence 9999999999999887777899999999999998899999999999999999999999999999987 222 224455
Q ss_pred HHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEe
Q 000555 272 LEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMD 351 (1427)
Q Consensus 272 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLD 351 (1427)
+|+.+ ..+|++++.+||++|+||.|||+++||+||||||||++|++++++++++++|
T Consensus 229 ~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 229 REKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred HHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 54422 1589999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCC
Q 000555 352 EISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKG 431 (1427)
Q Consensus 352 EPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~ 431 (1427)
|+|+|||++|+.+++++||+++|..+.|++++++||+++++++||+|++|++|+++|+||++++++||+++||.||++++
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhccCCCCCCCCCCCcccCCCcccCHHHHHHHH
Q 000555 432 VADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTC 511 (1427)
Q Consensus 432 ~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 511 (1427)
+|||++++++++++.++|.+++.|+.+.+++|+.+.|.+++.++++..+++.++++.+.++.++..++|.++.|+|+++|
T Consensus 366 ~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c 445 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKAC 445 (1391)
T ss_pred HHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 000555 512 FAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYK 591 (1427)
Q Consensus 512 ~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~r 591 (1427)
+.|++++++||..+++++.++.+++++++|++|+++.+ ++..+...+.|++||++++.+|+++++++++++++|||+|
T Consensus 446 ~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~K 523 (1391)
T KOG0065|consen 446 TIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYK 523 (1391)
T ss_pred HHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHH
Confidence 99999999999999999999999999999999999884 4456788899999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 000555 592 QRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVAN 671 (1427)
Q Consensus 592 qr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~ 671 (1427)
||+..||++|+++++++++++|..++++++|.+|+||++|+.+++++||+++++++++++++.++||+++++++++..|+
T Consensus 524 hr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An 603 (1391)
T KOG0065|consen 524 HRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIAN 603 (1391)
T ss_pred hhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccCccccc------------ccc---cccccc
Q 000555 672 TFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKK------------SVI---GDNTIG 736 (1427)
Q Consensus 672 ~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~------------~~~---~~~~~G 736 (1427)
.++++.++++++++||+|+..+||+||+|++|++|+.|+++++++|||.+.+|.|. ... .+.+.|
T Consensus 604 ~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G 683 (1391)
T KOG0065|consen 604 LIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLG 683 (1391)
T ss_pred hHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccC
Confidence 99999999999999999999999999999999999999999999999999999987 111 134588
Q ss_pred cceecccccC-----CCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhhhh-h--ccccCC
Q 000555 737 YNVLHTHSLP-----SGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQ-F--EINTTS 808 (1427)
Q Consensus 737 ~~~l~~~~~~-----~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~ 808 (1427)
.+++..+++. +..+|+|+++|++++|.++|+++..+++.|.++..+.+..+..++.......... . ..+...
T Consensus 684 ~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1391)
T KOG0065|consen 684 NDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGSSSEIEKLD 763 (1391)
T ss_pred ceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhccccccccccc
Confidence 8999988877 8889999999999999999999999999999999888776554332221111100 0 000001
Q ss_pred CCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 000555 809 APESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 809 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~ 888 (1427)
.....++++++.|+.+..++++||.|.+++|-.++.+| +++++|+|||+.++||.++||||+||||||||||+|+||
T Consensus 764 ~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R 840 (1391)
T KOG0065|consen 764 DSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGR 840 (1391)
T ss_pred cccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcC
Confidence 11111356778899899999999999999998877666 678999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEECCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccccc
Q 000555 889 KTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968 (1427)
Q Consensus 889 ~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~ 968 (1427)
+++|.++|+|.|||.|.++..|+|.+|||.|+|.|.|.+||||+|.|+|.||+|.+++.+++.++|++|++.++|++++|
T Consensus 841 ~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~d 920 (1391)
T KOG0065|consen 841 KTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYAD 920 (1391)
T ss_pred cccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhh
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Q 000555 969 ALVGFPGSSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047 (1427)
Q Consensus 969 ~~vg~~~~~~LSgGqrqrl~ia~aL~~~p-~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1047 (1427)
.+||.+| +|||.+|||||+||++|++|| .||||||||||||++++..|++.+|+++++|+|||||+||||.++++.||
T Consensus 921 aiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD 999 (1391)
T KOG0065|consen 921 ALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFD 999 (1391)
T ss_pred hhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHh
Confidence 9999999 999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCcEEEEccCCCCCchhHHHHHHhcCCCCCCCCCCCchhhHHhhcccchhhcccccHHHHHhccHHHHHHHHHh
Q 000555 1048 ELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSI 1127 (1427)
Q Consensus 1048 ~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 1127 (1427)
++++|++||+++|+||+|++++++++||+++||+ +||+..||||||||+++.+.+.+.+.||++.|++|++++++++++
T Consensus 1000 ~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v 1078 (1391)
T KOG0065|consen 1000 ELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELV 1078 (1391)
T ss_pred HHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999999999999999987 577777999999999999988888999999999999999999999
Q ss_pred hhcCCCCCC-CCCCCCCCccCCChHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHH
Q 000555 1128 KNLSVPPPG-SEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMV 1206 (1427)
Q Consensus 1128 ~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~ 1206 (1427)
++++.++++ ..+..++++|++|+|.|++.|+|||+++|||+|+|+.+|++++++.||++|++||+.|+ ++||++|.
T Consensus 1079 ~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~ 1155 (1391)
T KOG0065|consen 1079 KELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNA 1155 (1391)
T ss_pred HHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHH
Confidence 999999888 77888889999999999999999999999999999999999999999999999999995 69999999
Q ss_pred HhHHHHHHHHhHHHHHhhhhHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHH
Q 000555 1207 MGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINFERTARKF 1286 (1427)
Q Consensus 1207 ~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f 1286 (1427)
+|++|+++++.+.+++...+|.+..||.++|||+++||||+.+|++||+++|+||.++++++|.+|+|+|+||.+++.+|
T Consensus 1156 m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~ 1235 (1391)
T KOG0065|consen 1156 MGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKF 1235 (1391)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcccccCCCCchhHhHHhhhhCHHHHHHHHHHHHhh
Q 000555 1287 FLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQL 1366 (1427)
Q Consensus 1287 ~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~ 1366 (1427)
+||++++++..++++++|||+.+++||.++|+++.+++++++++||||++|++.||.||+|+||+||++|.++|++..++
T Consensus 1236 ~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~ 1315 (1391)
T KOG0065|consen 1236 FWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQL 1315 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccc-------CCCCCCHHHHHHhhcC----CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000555 1367 GDVETMIVE-------PTFRGTVKEYLEESLG----FGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427 (1427)
Q Consensus 1367 ~~~~~~~~~-------~~~~~~~~~~~~~~~g----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1427 (1427)
||.+..|.. |..+.||++|++++|| |.++.......+..+|.+++.+++.+++++.|+|||
T Consensus 1316 ~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1316 GDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred CCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 999887752 2244799999999999 999998888888889999999999999999999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-229 Score=2270.95 Aligned_cols=1397 Identities=58% Similarity=1.007 Sum_probs=1252.2
Q ss_pred CcccchhhhhHHHHhhCCCcchhhhhhcccCCCCCC-CC-cceeeecccccchhhhHHHHHHhhhcCccCHHHHHHHHHH
Q 000555 30 SLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNG-GE-AKTETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKE 107 (1427)
Q Consensus 30 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (1427)
..|||||+|+|||+|||||++|++++++.+..+.++ +. ....++|+.+++.++|+.++++++++++.|++++++++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 118 (1470)
T PLN03140 39 SVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRN 118 (1470)
T ss_pred cccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhhcccchhHHHHHHHHHh
Confidence 356899999999999999999999999864311111 11 0011389999999999999999999999999999999999
Q ss_pred HHhhcCCCCCccEEEEeeeEEEEEEecCCCcCCchhHHhHHHHHHHhhhccccCCccccceeeeCeeEEEeCCeEEEEEc
Q 000555 108 RLDRVGIEVPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLG 187 (1427)
Q Consensus 108 ~~~~~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llG 187 (1427)
|.+++|+++|+++|+|+||+|++++.++++.+||+.|.+.+.++......+...+++.+++||+|+|+.++|||+++|+|
T Consensus 119 ~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llG 198 (1470)
T PLN03140 119 RIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLG 198 (1470)
T ss_pred hhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEc
Confidence 99999999999999999999999998899999999999999887665443433344456889999999999999999999
Q ss_pred CCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHhh
Q 000555 188 PPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYIN 267 (1427)
Q Consensus 188 p~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 267 (1427)
|||||||||||+|+|+++++.+.+|+|++||+++++...++.++||+|+|.|++++||+|||.|++++++... ..++..
T Consensus 199 pnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~-~~~~~~ 277 (1470)
T PLN03140 199 PPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGT-RYDLLS 277 (1470)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCC-cccchh
Confidence 9999999999999999988767799999999998776667889999999999999999999999999876411 112333
Q ss_pred hhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCcE
Q 000555 268 DLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKT 347 (1427)
Q Consensus 268 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~i 347 (1427)
+..+.++++++.|++++|++|++....+.+.+..++++|+.+||++|+||.||++++++|||||||||+||++|+++|++
T Consensus 278 ~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~v 357 (1470)
T PLN03140 278 ELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKT 357 (1470)
T ss_pred hcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcE
Confidence 45566777777888899999998877777677788999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHHHHHHhcCCCCC
Q 000555 348 LFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLP 427 (1427)
Q Consensus 348 llLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p 427 (1427)
+||||||+|||+.++.++++.|++++++.|+|+|+++|||+++++++||+|++|++|+++|+||++++.+||+++||+||
T Consensus 358 lllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP 437 (1470)
T PLN03140 358 LFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCP 437 (1470)
T ss_pred EEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999998877999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhccCCCCCCCCCCCcccCCCcccCHHHH
Q 000555 428 PRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWEL 507 (1427)
Q Consensus 428 ~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~ 507 (1427)
+++++|||+++++++++++++|.....|+.+.++++++++|++++.++.+..+++.|.++...++.....++|..++|+|
T Consensus 438 ~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q 517 (1470)
T PLN03140 438 ERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMEL 517 (1470)
T ss_pred CCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHH
Confidence 99999999999999988878887666677778899999999999988888777776666555555555567799999999
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q 000555 508 FRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLP 587 (1427)
Q Consensus 508 ~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~ 587 (1427)
++.|++|++++++||+..++.++++.+++|+++|++|++++.+..+..+++.+.|++||+++..+++++++++.++.+||
T Consensus 518 ~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~ 597 (1470)
T PLN03140 518 LKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLP 597 (1470)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999987665545567888999999999999999999999999999
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Q 000555 588 VFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDM 667 (1427)
Q Consensus 588 vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~ 667 (1427)
+|+|||+.+||++|+|++++++.++|+.++++++|++|+|||+|+.+++++||.|+++++++++++.+++++++++++++
T Consensus 598 vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~ 677 (1470)
T PLN03140 598 VFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM 677 (1470)
T ss_pred hhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccCccccccc-ccccccccceecccccC
Q 000555 668 VVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSV-IGDNTIGYNVLHTHSLP 746 (1427)
Q Consensus 668 ~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~-~~~~~~G~~~l~~~~~~ 746 (1427)
.+|+.++++.++++++++||+++.++||+||+|++|+||+.|+++++++|||.+.+|.+... ....+.|.++|..+++.
T Consensus 678 ~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~ 757 (1470)
T PLN03140 678 IIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999999999999988864321 22456899999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhh--h--------h--h---hc----c-c-
Q 000555 747 SGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMA--K--------Q--Q---FE----I-N- 805 (1427)
Q Consensus 747 ~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~--------~--~---~~----~-~- 805 (1427)
....|+|++++++++++++|++++++++++.++.......+.++........ . . . .. . .
T Consensus 758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1470)
T PLN03140 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPE 837 (1470)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 8889999999999999999999999999998865554433322110000000 0 0 0 00 0 0
Q ss_pred c-----CC----CCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCC
Q 000555 806 T-----TS----APESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGA 876 (1427)
Q Consensus 806 ~-----~~----~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGa 876 (1427)
. .. .....+.+++..|+.|..++|+||+|.++.+...+..+...+++++|+|||++++|||++||||||||
T Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGa 917 (1470)
T PLN03140 838 GLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGA 917 (1470)
T ss_pred ccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCC
Confidence 0 00 00112234556788899999999999999887665555555667899999999999999999999999
Q ss_pred ChhHHHhhhcCCCCCceeEEEEEECCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHH
Q 000555 877 GKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEE 956 (1427)
Q Consensus 877 GKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~ 956 (1427)
||||||++|+|+.++|.++|+|.+||.+.....+++.+|||+|+|.++|.+||+|+|.|++.++.+...+.+++.+.+++
T Consensus 918 GKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~ 997 (1470)
T PLN03140 918 GKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDE 997 (1470)
T ss_pred CHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999999999987777899999999987655567789999999999999999999999998887766667777788999
Q ss_pred HHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000555 957 VMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036 (1427)
Q Consensus 957 ~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 1036 (1427)
+++.++|.+++|+.+|.+++++|||||||||+||++|+.+|+||||||||||||+.++..+++.|++++++|+|||||+|
T Consensus 998 vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~H 1077 (1470)
T PLN03140 998 VMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077 (1470)
T ss_pred HHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 99999999999999998888899999999999999999999999999999999999999999999999988999999999
Q ss_pred CCCHHHHHhhceEEEEecCcEEEEccCCCCCchhHHHHHHhcCCCCCCCCCCCchhhHHhhcccchhhcccccHHHHHhc
Q 000555 1037 QPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRS 1116 (1427)
Q Consensus 1037 ~~~~~~~~~~D~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~ 1116 (1427)
||+.++++.||++++|++||+++|.||.+.+++++++||++++|.++||+++|||||++|+++.+.+.+.+.||++.|++
T Consensus 1078 q~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~ 1157 (1470)
T PLN03140 1078 QPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKS 1157 (1470)
T ss_pred CCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhc
Confidence 99977899999999999889999999999888999999999988878999999999999999877666666799999999
Q ss_pred cHHHHHHHHHhhhcCCCCCCCCCCCCCCccCCChHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000555 1117 SEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSK 1196 (1427)
Q Consensus 1117 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~ 1196 (1427)
|++++++++.++++..++++.++..++++|++|+|+|++.|+||+++++||||.|+.+|+++++++|+++|++||+++++
T Consensus 1158 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~ 1237 (1470)
T PLN03140 1158 SSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTK 1237 (1470)
T ss_pred cHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999988888877776666555556778999999999999999999999999999999999999999999999999987
Q ss_pred CCChhhHHHHHhHHHHHHHHhHHHHHhhhhHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 000555 1197 RSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFM 1276 (1427)
Q Consensus 1197 ~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~ 1276 (1427)
..+.+++++++|++|++++|+++.++++++|.+..||+||+|||++|+|++++|++|++++|+|+.++++++|++|+|||
T Consensus 1238 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m 1317 (1470)
T PLN03140 1238 RSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAM 1317 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcccccCCCCchhHhHHhhhhCHHHH
Q 000555 1277 INFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAW 1356 (1427)
Q Consensus 1277 ~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y 1356 (1427)
+||++++.+||||+++++++.++++++|+++++++||.++|+.+++++++++++||||++|+++||+||+|+||+||++|
T Consensus 1318 ~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y 1397 (1470)
T PLN03140 1318 VAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAW 1397 (1470)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCccccccCC--CCCCHHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000555 1357 TLRGIVSSQLGDVETMIVEPT--FRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427 (1427)
Q Consensus 1357 ~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1427 (1427)
+++|+++|||+|.+..|.++| ...++++|++++|||+++++|++++++++|+++|++++++++|++|||||
T Consensus 1398 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1398 TVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999988776665 23679999999999999999999999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-183 Score=1842.70 Aligned_cols=1274 Identities=32% Similarity=0.529 Sum_probs=1054.9
Q ss_pred cCHHHHHHHHHHHHhhcCCCCC--ccEEEEeeeEEEEEEecCCCcCCchhHHhHHHHHHHhhhccccCCccccceeeeCe
Q 000555 96 QDNYKLLSAIKERLDRVGIEVP--KVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDV 173 (1427)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~p--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 173 (1427)
.|++++++.+.++.++.+...| +++|+|+||+|++. ..+....||+.|.+.+.......... ..+++++++||+|+
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGV-AADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEEE-eccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4566666654455555555555 99999999999993 34455689998887776553332221 12334567899999
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-CCceeEEEECCeecCcc--cccceEEEEccCCCCCCCCCHHHHHH
Q 000555 174 SGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS-LKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPELTVRETFD 250 (1427)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1427)
|+.++|||+++|+||||||||||||+|+|+.++. .+.+|+|.+||+++++. ..++.++||+|+|.|++++||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 9999999999999999999999999999997432 23699999999987543 23567999999999999999999999
Q ss_pred HHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChH
Q 000555 251 FAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330 (1427)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 330 (1427)
|+++++.+.... ....+.++ .+...+.+++.+||++++||.+|++.+++||||
T Consensus 161 f~~~~~~~~~~~----~~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 213 (1394)
T TIGR00956 161 FAARCKTPQNRP----DGVSREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213 (1394)
T ss_pred HHHHhCCCCCCC----CCCCHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcc
Confidence 998876431000 00001110 011246789999999999999999999999999
Q ss_pred HhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEec
Q 000555 331 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQG 410 (1427)
Q Consensus 331 qkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G 410 (1427)
|||||+||++|+.+|+|+||||||+|||+.++.++++.|++++++.|+|+|+++|||+++++++||+|++|++|+++|+|
T Consensus 214 erkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred cchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999999999999999999999999999999999999987678999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhccCCCCCC--
Q 000555 411 PRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKS-- 488 (1427)
Q Consensus 411 ~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~-- 488 (1427)
+++++.+||+++||+||++.++|||+.+++++.++ +.+...+ .....+.+++++.|++++.++.+..+++.+.++.
T Consensus 294 ~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 371 (1394)
T TIGR00956 294 PADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYE-KKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE 371 (1394)
T ss_pred CHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hcccccc-ccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999887543 2221111 1123568899999999987766655543221110
Q ss_pred -------------CCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 000555 489 -------------KCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEK 555 (1427)
Q Consensus 489 -------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~ 555 (1427)
.........++|..++|+|++.|++|+++.++||+..+..++++.+++|+++|++|++.+.+ ..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~ 448 (1394)
T TIGR00956 372 SDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN---TS 448 (1394)
T ss_pred hhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---ch
Confidence 00011223456889999999999999999999999999999999999999999999977643 34
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCc
Q 000555 556 NGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPE 635 (1427)
Q Consensus 556 ~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~ 635 (1427)
+.+.+.|++||++++.++.++.+++.++.+|++|+|||.+++|++++|++++++.++|+.++.+++|++|+|||+|+.++
T Consensus 449 ~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~ 528 (1394)
T TIGR00956 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528 (1394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCccc
Confidence 56788999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHH
Q 000555 636 TGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAIS 715 (1427)
Q Consensus 636 ~~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~ 715 (1427)
+++||.+++++++...++.++++++++++++...|+.++++.++++++++||+++.++||+||+|++|+||+.|++++++
T Consensus 529 ~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~ 608 (1394)
T TIGR00956 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCcccccc--ccc----------------------ccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHH
Q 000555 716 VNEFAAARWKKKS--VIG----------------------DNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVT 771 (1427)
Q Consensus 716 ~nef~~~~~~~~~--~~~----------------------~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~ 771 (1427)
.|||.+..+.|.. +.+ ..+.|.++|.. ++.....|.|.++++++++.++|.++.+
T Consensus 609 ~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 609 VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred HhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999998887741 000 11355667764 3344556899999999999999999999
Q ss_pred HHHHhcCcCCCccccccchh--h-hhHHh-h---------hhhhccccCCCCCCCCc-cCcc-cC--CCCceEEEeeeee
Q 000555 772 LALAYLNPLRKSQVVIDDKE--E-NSVKM-A---------KQQFEINTTSAPESGKK-KGMI-LP--FQPLAMTFHNVNY 834 (1427)
Q Consensus 772 l~l~~~~~~~~~~~~~~~~~--~-~~~~~-~---------~~~~~~~~~~~~~~~~~-~g~~-~~--~~~~~~~~~~v~~ 834 (1427)
+++++.++............ . ..... . ++.........+...+. .... .| .....++|+||+|
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~ 767 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTY 767 (1394)
T ss_pred HHHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEE
Confidence 99999875443321111000 0 00000 0 00000000000000000 0000 01 1123579999998
Q ss_pred EEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc-eeEEEEEECCccCCcccccce
Q 000555 835 YVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKEQSTFARI 913 (1427)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~ 913 (1427)
.++.+ .+++.+|+|||++++|||++||+|||||||||||++|+|+.++| +.+|+|.+||.+... .+++.
T Consensus 768 ~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~ 837 (1394)
T TIGR00956 768 EVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRS 837 (1394)
T ss_pred EecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcc
Confidence 87421 23467999999999999999999999999999999999987644 456999999998753 46788
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000555 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVEL 993 (1427)
Q Consensus 914 ~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL 993 (1427)
+|||+|+|.+++.+||+|++.|++.++.+...++++++++++++++.++|.+++|+.+|.++. +||||||||++||+||
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVEL 916 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHH
Confidence 999999999999999999999999988776667777788899999999999999999986543 8999999999999999
Q ss_pred hhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCCCCchhHH
Q 000555 994 VANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMI 1072 (1427)
Q Consensus 994 ~~~p~-illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~~~~~~~~ 1072 (1427)
+.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||++++|++||+++|.|+.+..+++++
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 99997 99999999999999999999999999888999999999999767889999999998889999999998888999
Q ss_pred HHHHhcCCCCCCCCCCCchhhHHhhcccchhhcccccHHHHHhccHHHHHHHHHhhhcCCCCCCC---CCCCCCCccCCC
Q 000555 1073 DYFQALDGIPSIPSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGS---EPLKFSSTYSQD 1149 (1427)
Q Consensus 1073 ~yf~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 1149 (1427)
+||+++ |.++||+++|||||+||+++.+.+.+...|+++.|++|+++++..+.++++..+.... ......++|+.|
T Consensus 997 ~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1075 (1394)
T TIGR00956 997 NYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAAS 1075 (1394)
T ss_pred HHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCC
Confidence 999998 4457999999999999999875544445689999999998887766655543321111 111122468999
Q ss_pred hHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHhHHHHHHHHhHHHHHhhhhHHH
Q 000555 1150 PLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIV 1229 (1427)
Q Consensus 1150 ~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~ 1229 (1427)
+|+|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ +++++++++|++|+++++.++. ++.++|.+
T Consensus 1076 ~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f 1151 (1394)
T TIGR00956 1076 LWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPF 1151 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhH
Confidence 9999999999999999999999999999999999999999999986 5789999999999988887776 44566778
Q ss_pred HHhhHHH-HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHH-------HHHHHHHHHHHHHHHH
Q 000555 1230 SIERTVF-YREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINFERTARK-------FFLFLVFMFLTFSYFT 1301 (1427)
Q Consensus 1230 ~~er~v~-~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~-------f~~~~~~~~~~~~~~~ 1301 (1427)
..||.+| +||+++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.. |++|+++++++.++++
T Consensus 1152 ~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 1231 (1394)
T TIGR00956 1152 VAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFS 1231 (1394)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHH
Confidence 7888875 8999999999999999999999999999999999999999999988766 9999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhcccccCCCCchhHhHHhhhhCHHHHHHHHHHHHhhCCCcccccc------
Q 000555 1302 FYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVE------ 1375 (1427)
Q Consensus 1302 ~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~~------ 1375 (1427)
++|+++++++|+.++|+.+++++++++++||||++|+++||.||+|++|+||++|+++|++.|||+|.+..|..
T Consensus 1232 s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f 1311 (1394)
T TIGR00956 1232 TLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTF 1311 (1394)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998865531
Q ss_pred -CCCCC--------------------------------CHHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000555 1376 -PTFRG--------------------------------TVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFL 1422 (1427)
Q Consensus 1376 -~~~~~--------------------------------~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1422 (1427)
|+.+. ++.+|+ ..+|+++++.|+|++++++|++++ +++++++.+.
T Consensus 1312 ~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1312 NPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred cCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcCCcccccccchhhhhHHHHHH-HHHHHhhheE
Confidence 11112 344554 457999999999999999999988 8888888775
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-95 Score=917.93 Aligned_cols=584 Identities=25% Similarity=0.410 Sum_probs=487.2
Q ss_pred CCceEEEeeeeeEEeCccch----------------hccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhc
Q 000555 823 QPLAMTFHNVNYYVDMPQAM----------------RSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLA 886 (1427)
Q Consensus 823 ~~~~~~~~~v~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~ 886 (1427)
.+..++|.|++|+++..... ++.....+++++|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 46789999999998754210 00111223567999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEECCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc
Q 000555 887 GRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966 (1427)
Q Consensus 887 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~ 966 (1427)
|+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|.+.++.+...+++++.++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876444689999999986532 345689999999999999999999999888766555666777889999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Q 000555 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1046 (1427)
Q Consensus 967 ~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1046 (1427)
+|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred ceEEEEecCcEEEEccCCCCCchhHHHHHHhcCCCCCCCCCCCchhhHHhhcccchhh------cc---cccHHHHHhcc
Q 000555 1047 DELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAATEE------KL---GVDFADVYRSS 1117 (1427)
Q Consensus 1047 D~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~g~~~~~~~~npad~~l~v~~~~~~~------~~---~~~~~~~~~~s 1117 (1427)
|++++|++ |+++|.|+. +++.+||+++| .+||+++|||||++|+++...+. .. .....+.|+++
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G--~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVG--FSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCC--CCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 689999986 68999999996 47999999999999998753210 00 01223445421
Q ss_pred HHHHHHHHHhhh--cCC-CCC-----CCCCCC-CCCccCCChHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Q 000555 1118 EQYRVVESSIKN--LSV-PPP-----GSEPLK-FSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGS 1188 (1427)
Q Consensus 1118 ~~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1188 (1427)
. .++..+.++. ... +.. ..+... ....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 000 000 001000 11235678999999999999998 99999999999999999999999
Q ss_pred HhcCCCCCCCChhhHHHHHhHHHHHHHHhHHHHHhhhhHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000555 1189 VFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTII 1268 (1427)
Q Consensus 1189 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~ 1268 (1427)
+||+++ ..+++++.|++||+++++++.+++++++.++.||+||+||+++|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 468999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcccccCCCCchhHhHHh
Q 000555 1269 FGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWF 1348 (1427)
Q Consensus 1269 ~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~ 1348 (1427)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++||.++|+.++++++.++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhCHHHHHHHHHHHHhhCCCcc-----ccccCC-CCCCHHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000555 1349 YYISPVAWTLRGIVSSQLGDVET-----MIVEPT-FRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFL 1422 (1427)
Q Consensus 1349 ~~isp~~y~~~~l~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1422 (1427)
+|+||++|++++++.|||++.+. .|..+. .......++. ..+++....|.++++|++|+++|++++|++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987542 342111 0111112222 2344455789999999999999999999999998
Q ss_pred cc
Q 000555 1423 NF 1424 (1427)
Q Consensus 1423 ~~ 1424 (1427)
||
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 86
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-95 Score=908.98 Aligned_cols=579 Identities=32% Similarity=0.570 Sum_probs=505.8
Q ss_pred CCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc-eeEEEEEEC
Q 000555 823 QPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKIS 901 (1427)
Q Consensus 823 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~ 901 (1427)
.+..++|+|+++..+.+.. ..+++|+|||++++|||++|||||||||||||||+|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567899999987754321 3578999999999999999999999999999999999998764 689999999
Q ss_pred CccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 902 GYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 902 g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
|++.+...+++.+|||.|+|.++|++||+|+|.|++.+|+|...+.++++++|+++++.+||.+++|+++|+++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
||||||+||.+|+.||+||||||||||||+.++..++++|+++|++|+|||||+|||+.++++.||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 599999
Q ss_pred cCCCCCchhHHHHHHhcCCCCCCCCCCCchhhHHhhcccc--hhhccc----ccHHHHHh-ccHHHHHHHHHhhhcCCCC
Q 000555 1062 GKLGVHSKTMIDYFQALDGIPSIPSGYNPATWMLEVTTAA--TEEKLG----VDFADVYR-SSEQYRVVESSIKNLSVPP 1134 (1427)
Q Consensus 1062 g~~~~~~~~~~~yf~~~~g~~~~~~~~npad~~l~v~~~~--~~~~~~----~~~~~~~~-~s~~~~~~~~~~~~~~~~~ 1134 (1427)
|+. +++.+||+++| ++||+++|||||++|+++.. .+.... ....+.++ .+...+......+.+...
T Consensus 253 G~~----~~~~~ff~~~G--~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSLG--FPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS- 325 (613)
T ss_pred cCH----HHHHHHHHhCC--CCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccc-
Confidence 997 78999999996 46999999999999999842 111000 00111111 111111100000111111
Q ss_pred CCCCCCCCCCccCCChHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHhHHHHHH
Q 000555 1135 PGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASC 1214 (1427)
Q Consensus 1135 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1214 (1427)
++ .+.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.+
T Consensus 326 ---~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 326 ---KK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFIL 397 (613)
T ss_pred ---cc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHH
Confidence 11 111127899999999999999999999999999999999999999999999975 4667789999999999
Q ss_pred HHhHHHHHhhhhHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHH
Q 000555 1215 LFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMF 1294 (1427)
Q Consensus 1215 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1294 (1427)
.++.+..+...++.++.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|+++++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcccccCCCCchhHhHHhhhhCHHHHHHHHHHHHhhCCCccccc
Q 000555 1295 LTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV 1374 (1427)
Q Consensus 1295 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1374 (1427)
+..+.++++|++++++.||...|..++++++..+++|+||+++.++||.||+|++|+|+++|++||++.|||++....|.
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~ 557 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCF 557 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997222332
Q ss_pred cCC---CCCCHHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 000555 1375 EPT---FRGTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQK 1426 (1427)
Q Consensus 1375 ~~~---~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1426 (1427)
..+ ...++.+++ ..++++.++.|.++.++++|+++|++++|+++++.-..+
T Consensus 558 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 558 LSGNLCCESTGEDVL-KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred cCcCCcccccHHHHH-HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 111 113455555 568999999999999999999999999999999865443
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-94 Score=915.88 Aligned_cols=567 Identities=31% Similarity=0.501 Sum_probs=501.8
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc-eeEEEEEECCccCCcccccceEEEEccCCCCCCCCC
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVT 928 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 928 (1427)
+++++|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999986543 358999999998766667888999999999999999
Q ss_pred HHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000555 929 VEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG-SSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1427)
Q Consensus 929 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~LSgGqrqrl~ia~aL~~~p~illlDEPTs 1007 (1427)
|+||+.|++.++.+...+.+++.+.++++++.++|.+++|+.+|+++ .++||||||||++||+||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999887777777888899999999999999999999764 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCCCCchhHHHHHHhcCCCCCCCCC
Q 000555 1008 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSG 1087 (1427)
Q Consensus 1008 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~g~~~~~~~ 1087 (1427)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|.||. +++.+||+++| .+||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g--~~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLG--HPCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcC--CCCCCC
Confidence 99999999999999999888999999999998889999999999985 799999997 67899999996 479999
Q ss_pred CCchhhHHhhcccchhhc-----ccccHHHHHhccHHHHHHHHHhhhcCCCCCC---CCCCCCCCccCCChHHHHHHHHH
Q 000555 1088 YNPATWMLEVTTAATEEK-----LGVDFADVYRSSEQYRVVESSIKNLSVPPPG---SEPLKFSSTYSQDPLSQFFICFW 1159 (1427)
Q Consensus 1088 ~npad~~l~v~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Q~~~l~~ 1159 (1427)
.|||||++|+++.+.+.+ ...++.+.|++|+.+++..+..+....+.++ .......++|..++++|++.|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999987543221 1135667777777666554433321111111 11111224678999999999999
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHhHHHHHHHHhHHHHHhhhhHHHHHhhHHHHHH
Q 000555 1160 KQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVFYRE 1239 (1427)
Q Consensus 1160 R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 1239 (1427)
|+++++||||.++.+|+++++++|+++|++||++++ ++++++++.|++|++++++++.+++.+.+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999985 57899999999999999999988888889999999999999
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHH
Q 000555 1240 KAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAV 1319 (1427)
Q Consensus 1240 ~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~ 1319 (1427)
+++|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCchhHhHHhhhhCHHHHHHHHHHHHhhCCCcc-ccccCCC----CCCHHHHHHhhcCCCC
Q 000555 1320 ISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVET-MIVEPTF----RGTVKEYLEESLGFGP 1394 (1427)
Q Consensus 1320 ~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~g~~~ 1394 (1427)
++++++.++++|+||+++.++||+||+|++|+||++|++++++.|||++.+. +|...+. +.++ +++++.||++.
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g-~~~l~~~g~~~ 584 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG-EVILETLSFRN 584 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh-HHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999998764 4421111 1234 66777899999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000555 1395 GMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQKR 1427 (1427)
Q Consensus 1395 ~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1427 (1427)
++.|.+++++++|+++|++++|++|++-...+|
T Consensus 585 ~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 585 ADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999998766665
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-91 Score=950.38 Aligned_cols=564 Identities=25% Similarity=0.425 Sum_probs=496.5
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--ceeEEEEEECCccCCc--ccccceEEEEccCCCCCC
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKEQ--STFARISGYVEQNDIHSP 925 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~ 925 (1427)
+++++|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+... ..+++.++||+|+|.++|
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 457799999999999999999999999999999999998532 2468999999987643 235567999999999999
Q ss_pred CCCHHHHHHHHHhccCCc----CCCHHHHHH-HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000555 926 QVTVEESLWFSANLRLSK----EVSKNQRHE-FVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSII 1000 (1427)
Q Consensus 926 ~lTv~e~l~~~~~l~~~~----~~~~~~~~~-~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~il 1000 (1427)
.+||+|++.|++.++.+. ..+.+++.+ .++++++.+||++++|+.+|+...++|||||||||+||++|+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998887643 233444433 357789999999999999998888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCCCCchhHHHHHHhcC
Q 000555 1001 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALD 1079 (1427)
Q Consensus 1001 llDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~ 1079 (1427)
+|||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|.|+. +++.+||+++|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999874 999999999998889999999999986 689999986 68999999996
Q ss_pred CCCCCCCCCCchhhHHhhcccchh-------h---cccccHHHHHhccHHHHHHHHHhhhcCCC--C-------------
Q 000555 1080 GIPSIPSGYNPATWMLEVTTAATE-------E---KLGVDFADVYRSSEQYRVVESSIKNLSVP--P------------- 1134 (1427)
Q Consensus 1080 g~~~~~~~~npad~~l~v~~~~~~-------~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~------------- 1134 (1427)
.+||+++|||||++|+++++.+ . +...++++.|++|+.+++..+.+++.... .
T Consensus 307 --~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 --FKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred --CCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 4799999999999999886431 1 12357999999999887766555432111 0
Q ss_pred CCCCCCCCCCccCCChHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHhHHHHHH
Q 000555 1135 PGSEPLKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASC 1214 (1427)
Q Consensus 1135 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1214 (1427)
..++.....+.|..|+|+|+++|++|+++.+||||.++.+|+++++++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011122234688999999999999999999999999999999999999999999999986 4679999999999999
Q ss_pred HHhHHHHHhhhhHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHH
Q 000555 1215 LFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMF 1294 (1427)
Q Consensus 1215 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1294 (1427)
++.++.++..+ +.+..||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887665 44567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcccccCCCCchhHhHHhhhhCHHHHHHHHHHHHhhCCCccccc
Q 000555 1295 LTFSYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIV 1374 (1427)
Q Consensus 1295 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1374 (1427)
++.++++++|+++++++||..+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++|++.|||++.+.+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777663
Q ss_pred c------------------------CCCC-CCHHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000555 1375 E------------------------PTFR-GTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNF 1424 (1427)
Q Consensus 1375 ~------------------------~~~~-~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1424 (1427)
. ||.. +++.+|+...|||++++.|+|++|+++|+++|+++++++++++++
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 1111 467899988899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-90 Score=934.37 Aligned_cols=593 Identities=23% Similarity=0.395 Sum_probs=500.5
Q ss_pred CCceEEEeeeeeEEeC-------ccc----------hhc-cC---CCcccceeccceeeEEeCCeEEEEEcCCCCChhHH
Q 000555 823 QPLAMTFHNVNYYVDM-------PQA----------MRS-QG---IPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTL 881 (1427)
Q Consensus 823 ~~~~~~~~~v~~~~~~-------~~~----------~~~-~~---~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTL 881 (1427)
+.+.++|+|+++..+. |.. ... .+ .++.++++|+|||+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 3567899999876652 110 000 01 12235779999999999999999999999999999
Q ss_pred HhhhcCCCCC-ceeEEEEEECCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCc-------CCCHHHH---
Q 000555 882 MDVLAGRKTG-GYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSK-------EVSKNQR--- 950 (1427)
Q Consensus 882 l~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-------~~~~~~~--- 950 (1427)
|++|+|+.++ ...+|+|.+||++..+...++.++||+|+|.|+|.+||+|+|.|++.++.+. +.+.+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 9999998653 2458999999998755444678999999999999999999999998776321 1111111
Q ss_pred ---------------------HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000555 951 ---------------------HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1427)
Q Consensus 951 ---------------------~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgL 1009 (1427)
...++++++.+||++++|+.+|+...++|||||||||+||++|+.+|+++||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12367899999999999999999888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCCCCchhHHHHHHhcCCCCCCCCCC
Q 000555 1010 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGY 1088 (1427)
Q Consensus 1010 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~g~~~~~~~~ 1088 (1427)
|+.++..+++.|+++++ .|+|||+++|||+.++++.||+|++|++ |+++|.||. +++.+||+++| .+||+++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lG--f~cP~~~ 440 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCG--FKCPERK 440 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcC--CCCCCCC
Confidence 99999999999999986 5899999999998889999999999986 799999986 78999999996 4799999
Q ss_pred CchhhHHhhcccchh-h-----------cccccHHHHHhccHHHHHHHHHhhhcCCCCCCCCCCCCCCccCCChHHHHHH
Q 000555 1089 NPATWMLEVTTAATE-E-----------KLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQFFI 1156 (1427)
Q Consensus 1089 npad~~l~v~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ 1156 (1427)
|||||++|+++.... . ....++++.|++|+.+++..+.++........++.....++|..+++.|++.
T Consensus 441 n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~ 520 (1470)
T PLN03140 441 GTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKA 520 (1470)
T ss_pred ChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHH
Confidence 999999999986432 1 1234689999999887776554432111111111111234689999999999
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHhHHHHHHHHhHHHHHhhhhHHHHHhhHHH
Q 000555 1157 CFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVSIERTVF 1236 (1427)
Q Consensus 1157 l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~ 1236 (1427)
|++|+++..||||.++..|+++.+++|+++|++||+++.+..+..+.+...|++||++++++++++.. ++.+..||+||
T Consensus 521 ~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf 599 (1470)
T PLN03140 521 CWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPVF 599 (1470)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchh
Confidence 99999999999999999999999999999999999998654445566788899999999988876654 57778899999
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH
Q 000555 1237 YREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHL 1316 (1427)
Q Consensus 1237 ~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~ 1316 (1427)
+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+..+
T Consensus 600 ~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~ 679 (1470)
T PLN03140 600 YKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMII 679 (1470)
T ss_pred HHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCchhHhHHhhhhCHHHHHHHHHHHHhhCCCccc-cccCCCC-CCHHHHHHhhcCCCC
Q 000555 1317 AAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETM-IVEPTFR-GTVKEYLEESLGFGP 1394 (1427)
Q Consensus 1317 A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~g~~~ 1394 (1427)
|+.++++++.++++|+||+||+++||+||+|++|+||++|+++|+++|||.+.... +.+.+.. +++.+|+ +.+||..
T Consensus 680 A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~~ 758 (1470)
T PLN03140 680 ANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVFT 758 (1470)
T ss_pred HHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcCc
Confidence 99999999999999999999999999999999999999999999999999775532 1122222 4455555 7899975
Q ss_pred C--ChhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000555 1395 G--MVGVSAAVLVAFSLLFFGSFAFSVKFLNF 1424 (1427)
Q Consensus 1395 ~--~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1424 (1427)
+ +.|+++++|++|+++|+++++++|++++.
T Consensus 759 ~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 759 DKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5 56999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-84 Score=809.97 Aligned_cols=566 Identities=27% Similarity=0.475 Sum_probs=503.3
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc-eeEEEEEECCccCCcccccceEEEEccCCCCCCCCC
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVT 928 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 928 (1427)
.+.++|+|+|+-++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.++..-++.++|++|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 4567999999999999999999999999999999999975432 235799999998766444788999999999999999
Q ss_pred HHHHHHHHHhccCCcC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000555 929 VEESLWFSANLRLSKE----VSKNQRH-EFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMD 1003 (1427)
Q Consensus 929 v~e~l~~~~~l~~~~~----~~~~~~~-~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlD 1003 (1427)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++++||+||+...+|+||||||||++|.+++.+++++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998743 2222222 2577999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCCCCchhHHHHHHhcCCCC
Q 000555 1004 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIP 1082 (1427)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~g~~ 1082 (1427)
|+|+|||+.|+.++.+.||++++ .+.|+++++|||+.+++++||+|++|.+ |+++|.||. +++++||+++| .
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G--f 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG--F 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC--c
Confidence 99999999999999999999986 4889999999999999999999999997 699999997 78999999996 4
Q ss_pred CCCCCCCchhhHHhhcccchhh-----------ccc-ccHHHHHhccHHHHHHHHHhhhcCCCCCCCCCCCCCCccCCCh
Q 000555 1083 SIPSGYNPATWMLEVTTAATEE-----------KLG-VDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDP 1150 (1427)
Q Consensus 1083 ~~~~~~npad~~l~v~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1150 (1427)
.||+..++|||+.++++...+. ... .++++.|.+|+.+++....++........++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 7999999999999999832211 111 5799999999998887655443222222333334456899999
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHhHHHHHHHHhHHHHHhhhhHHHH
Q 000555 1151 LSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASCLFLGVNNASSVQPIVS 1230 (1427)
Q Consensus 1151 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1230 (1427)
|.|++.|+.|.++.+.||..|...++++.+++|+++|++|++... .+..+.+.+.|++||++++..++++..+ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999983 5677899999999999999998887776 4455
Q ss_pred HhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000555 1231 IERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITFFMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGL 1310 (1427)
Q Consensus 1231 ~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1310 (1427)
+.||||+|||...+|++++|.++.++.++|+.++.+++|.+|+||++||.+++++||.++++++++..++.+++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCchhHhHHhhhhCHHHHHHHHHHHHhhCCCcccccc---------------
Q 000555 1311 TPNQHLAAVISSAFYSLWNLQSGFLIPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVETMIVE--------------- 1375 (1427)
Q Consensus 1311 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~~--------------- 1375 (1427)
+++...|+.++++.+.+..+++||+||.++||+||+|++|+||+.|++++++.|||++.+.+|.+
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998887751
Q ss_pred ------CCCC-CCHHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000555 1376 ------PTFR-GTVKEYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQ 1425 (1427)
Q Consensus 1376 ------~~~~-~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1425 (1427)
+|.. +.+.+|++..|+|++.|.|++++|++||.++|.++..+++.|+|.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1111 3467888888999999999999999999999999999999999854
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-79 Score=762.92 Aligned_cols=585 Identities=30% Similarity=0.528 Sum_probs=488.8
Q ss_pred CCccEEEEeeeEEEEEEecCCCcCCchhHHhHHHHHHHhhhccccCCccccceeeeCeeEEEeCCeEEEEEcCCCCCHHH
Q 000555 116 VPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKST 195 (1427)
Q Consensus 116 ~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 195 (1427)
...++++|+|+++++... .+ ..+++|+|||++++|||++||+||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 456789999999886431 11 4578999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHh
Q 000555 196 LLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275 (1427)
Q Consensus 196 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1427)
||++|+|+...+...+|+|++||++.+....++.+|||.|+|.+++++||+|++.|+++++.+.. +.+.+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~--------~~~~~-- 141 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS--------LSKEE-- 141 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC--------CCHHH--
Confidence 99999999987667899999999888777888999999999999999999999999999986521 11222
Q ss_pred hcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCC
Q 000555 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 355 (1427)
Q Consensus 276 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPts 355 (1427)
.+.+++++++.|||.+|+||.+|+...|||||||||||+||..|+.+|.||+||||||
T Consensus 142 ----------------------k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTS 199 (613)
T KOG0061|consen 142 ----------------------KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTS 199 (613)
T ss_pred ----------------------HHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCC
Confidence 2346899999999999999999999889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHH
Q 000555 356 GLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADF 435 (1427)
Q Consensus 356 gLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~ 435 (1427)
|||+.++.++++.|+++|++ |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||++.|++||+..||+||
T Consensus 200 GLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf 278 (613)
T KOG0061|consen 200 GLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADF 278 (613)
T ss_pred CcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHH
Confidence 99999999999999999987 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccchhccccCCCCCCcCCCHHHHHHHHH-hChhhHhHhhhccCCCCCCCCCCCcccCCCcccCHHHHHHHHHHH
Q 000555 436 LQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFK-DSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAR 514 (1427)
Q Consensus 436 l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 514 (1427)
+.++.+..++.+..... .......+.++ .....+... ........ ..........++|.|+..+++|
T Consensus 279 ~l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 279 LLDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLE-ALEKSLST-----SKKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHH-HHhhhccc-----ccccccccCCcHHHHHHHHHHH
Confidence 99987743110000000 00000001110 000000000 00000000 0000111167899999999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHHHHHHHHHHHHHHHhh-hHHHHhhhhhHHHHhh
Q 000555 515 EILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFS-ELPIMITRLPVFYKQR 593 (1427)
Q Consensus 515 ~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~rqr 593 (1427)
.+..+.|++.+...|..+.+++++++|.+|++.+... .....+.|++||.+..+.+..+. .++.+.+++++|.||+
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~---~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDA---KGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999874332 34447788888888887666655 6899999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q 000555 594 DNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTF 673 (1427)
Q Consensus 594 ~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~ 673 (1427)
.+++|+.++|++++.+.++|+.++.+++|.+++|||+|+.++..+|+.+.++.++..+++.++..+++++.++...|.++
T Consensus 424 ~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~ 503 (613)
T KOG0061|consen 424 SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSL 503 (613)
T ss_pred hcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccCccccccc--ccccccccceecccccCCCCcc
Q 000555 674 ASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSV--IGDNTIGYNVLHTHSLPSGDYW 751 (1427)
Q Consensus 674 ~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~G~~~l~~~~~~~~~~~ 751 (1427)
++...+.+++++||+++.+.+|+||+|+.|+|+..|+++++..|+|.+....|... ......|..+++..++... .
T Consensus 504 ~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 581 (613)
T KOG0061|consen 504 GPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--S 581 (613)
T ss_pred HHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--c
Confidence 99999999999999999999999999999999999999999999998622222211 1233466677777776543 4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCc
Q 000555 752 YWIGVGALLLYSLLFNSVVTLALAYLNP 779 (1427)
Q Consensus 752 ~w~~~g~ll~~~~~f~~l~~l~l~~~~~ 779 (1427)
.|.++.+++++.++|.+++++++++...
T Consensus 582 ~~~~l~~l~~~~~~~~il~y~~L~~~~~ 609 (613)
T KOG0061|consen 582 FWLDLLVLLAFIVFFRVLGYLALRFRVK 609 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6899999999999999999999988643
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-77 Score=757.72 Aligned_cols=609 Identities=22% Similarity=0.375 Sum_probs=473.3
Q ss_pred CCccEEEEeeeEEEEEEecCCCcCCchhHHhHHHHHHHhhhccccCCccccceeeeCeeEEEeCCeEEEEEcCCCCCHHH
Q 000555 116 VPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKST 195 (1427)
Q Consensus 116 ~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 195 (1427)
.+.++++|+|+++.+.......+.. .+...+.......+.. .+..++++|+|+|++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~l~-~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGS----NIKRILGHKPKISDET-RQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCccccc----cccccccccccccccc-ccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 4689999999999875431111110 0111111000000000 1112467999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHh
Q 000555 196 LLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275 (1427)
Q Consensus 196 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1427)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+.. ..+.+
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~--------~~~~~-- 177 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS--------LTKQE-- 177 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC--------CCHHH--
Confidence 999999998764 3589999999987542 34569999999999999999999999876543210 00000
Q ss_pred hcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCC
Q 000555 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 355 (1427)
Q Consensus 276 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPts 355 (1427)
...+++++++.+||+++.||.+|++..++|||||||||+||++|+.+|+|++|||||+
T Consensus 178 ----------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPts 235 (659)
T PLN03211 178 ----------------------KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 235 (659)
T ss_pred ----------------------HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCC
Confidence 1124678999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHH
Q 000555 356 GLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADF 435 (1427)
Q Consensus 356 gLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~ 435 (1427)
|||+.++.++++.|+++++ .|+|||+++|||..+++++||+|++|++|+++|+|+.+++.+||+++|++||++.|||||
T Consensus 236 gLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf 314 (659)
T PLN03211 236 GLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADF 314 (659)
T ss_pred CcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHH
Confidence 9999999999999999976 589999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhccC---CCCCCC-----CCCC-cccCCCcccCHHH
Q 000555 436 LQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSV---PYDKSK-----CHPS-ALSKTRYAVSKWE 506 (1427)
Q Consensus 436 l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~---~~~~~~-----~~~~-~~~~~~~~~s~~~ 506 (1427)
+.++++...+.+.......+ ...+.+.+.|++... +........ ...... .... ......+..++|.
T Consensus 315 ~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (659)
T PLN03211 315 LLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFN 390 (659)
T ss_pred HHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHH
Confidence 99998754321100000111 112233344432111 111111000 000000 0000 0011234568999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHHHHHHHHHHHHH-HHhhhHHHHhhh
Q 000555 507 LFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMF-NGFSELPIMITR 585 (1427)
Q Consensus 507 ~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~-~~~~~~~~~~~~ 585 (1427)
|+..+++|.++. +|+..+...|+++.+++|+++|++|++.+ ..+.+.+.|++||++++.++ +.+..++.+..+
T Consensus 391 Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~e 464 (659)
T PLN03211 391 QFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQE 464 (659)
T ss_pred HHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887 78888888999999999999999999753 24567889999999877554 556888999999
Q ss_pred hhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000555 586 LPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIAR 665 (1427)
Q Consensus 586 ~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~~l~l~~~~~~~~~l~~~i~a~~~ 665 (1427)
|++|+|||.+++|++++|++++++.++|+.++.+++|++++|||+|+.+++++|+.|++++++...++.+++.+++++++
T Consensus 465 r~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~ 544 (659)
T PLN03211 465 RAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIM 544 (659)
T ss_pred hHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccCcc-----ccccccccccccccee
Q 000555 666 DMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARW-----KKKSVIGDNTIGYNVL 740 (1427)
Q Consensus 666 ~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~G~~~l 740 (1427)
+...|+.++++..+++++|+||+++ +||+||+|++|+||+.|++++++.|||.+.+- .|.........++.++
T Consensus 545 ~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~ 622 (659)
T PLN03211 545 DAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV 622 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc
Confidence 9999999999999999999999996 79999999999999999999999999976442 2321111111222233
Q ss_pred cccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 000555 741 HTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLN 778 (1427)
Q Consensus 741 ~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~ 778 (1427)
....+. ....|.++++++++.++|.+++++++++.+
T Consensus 623 ~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 623 EEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 322222 234788999999999999999999997654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-78 Score=766.47 Aligned_cols=570 Identities=25% Similarity=0.437 Sum_probs=481.7
Q ss_pred ccccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCC
Q 000555 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 163 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~ 242 (1427)
++.++++|+|+|++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||++++....++.+|||+|+|.++++
T Consensus 34 ~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 34 ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCcc
Confidence 34467899999999999999999999999999999999999877545689999999998765667889999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+|||.|+++++.+.. ..+.+ .+.+++++++.+||++++||.+|+.
T Consensus 114 lTV~e~l~f~~~~~~~~~--------~~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~ 161 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRR--------VTKKE------------------------KRERVDEVLQALGLRKCANTRIGVP 161 (617)
T ss_pred CcHHHHHHHHHhcCCCCC--------CCHHH------------------------HHHHHHHHHHHcCchhcCcCccCCC
Confidence 999999999988764310 00111 1124788999999999999999986
Q ss_pred c-CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 323 M-IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 323 ~-~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
. .++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|
T Consensus 162 ~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll 240 (617)
T TIGR00955 162 GRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILM 240 (617)
T ss_pred CCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEe
Confidence 4 789999999999999999999999999999999999999999999999976 49999999999999999999999999
Q ss_pred eCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhc
Q 000555 402 SEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSL 481 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l 481 (1427)
++|+++|+|+++++.+||+++|++||+..+++||+.++++....... ......+++.+.++.++..++.....
T Consensus 241 ~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~~~~~~ 313 (617)
T TIGR00955 241 AEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRDMLVNT 313 (617)
T ss_pred eCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHHHHHHh
Confidence 99999999999999999999999999999999999998764322110 00112345556666555444433322
Q ss_pred cCCCCCCC---CCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchh
Q 000555 482 SVPYDKSK---CHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGN 558 (1427)
Q Consensus 482 ~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~ 558 (1427)
........ ..........+..++|.|+..+++|.++..+||+..+..+.++.+++++++|++|++.+.+ ..+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~ 390 (617)
T TIGR00955 314 NLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQ 390 (617)
T ss_pred hhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHH
Confidence 21111000 0001112345678999999999999999999999999999999999999999999976543 34566
Q ss_pred hHHHHHHHHHHHHHHHHh-hhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchh
Q 000555 559 LYLSCLFFAVVHMMFNGF-SELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETG 637 (1427)
Q Consensus 559 ~~~g~lff~~~~~~~~~~-~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~ 637 (1427)
...|++|+.++.++|..+ ..++.+..++++|+||+.+++|++++|++++.+.++|..++.+++|.+++|||+|+.+++.
T Consensus 391 ~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~ 470 (617)
T TIGR00955 391 NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGAT 470 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHH
Confidence 778999999888877764 5577888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHH
Q 000555 638 RFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVN 717 (1427)
Q Consensus 638 ~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~n 717 (1427)
+|+.+++++++...++.++++++++++++...|..+++..++++++++||+++.+++|+||+|++|+||+.|++++++.|
T Consensus 471 ~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~n 550 (617)
T TIGR00955 471 HFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLIN 550 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcc-ccccccc---ccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 000555 718 EFAAARW-KKKSVIG---DNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYL 777 (1427)
Q Consensus 718 ef~~~~~-~~~~~~~---~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~ 777 (1427)
||.+..+ .|..... ....|.++++.+++... +.|.++++++++.++|.+++++++++.
T Consensus 551 ef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 551 QWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred HhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988765 3322111 12357788888888654 459999999999999999999999874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-75 Score=732.71 Aligned_cols=763 Identities=23% Similarity=0.308 Sum_probs=420.9
Q ss_pred hccccCCccccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEE
Q 000555 156 GLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAY 232 (1427)
Q Consensus 156 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~y 232 (1427)
++++.++.+++.+||+|+|+.|++|+.++|+|||||||||++++|.+.++|+ +|+|.++|.++.+++ +++++|.
T Consensus 355 nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~igl 431 (1228)
T KOG0055|consen 355 NVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGL 431 (1228)
T ss_pred EEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCe
Confidence 4445567777889999999999999999999999999999999999999986 999999999998764 4689999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCc
Q 000555 233 ISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD 312 (1427)
Q Consensus 233 v~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~ 312 (1427)
|+|+|.+| ..||+|||.|+... ... +++.+..|.+ ...+. ...|+
T Consensus 432 V~QePvlF-~~tI~eNI~~G~~d-----at~---~~i~~a~k~a-----------------------na~~f---i~~lp 476 (1228)
T KOG0055|consen 432 VSQEPVLF-ATTIRENIRYGKPD-----ATR---EEIEEAAKAA-----------------------NAHDF---ILKLP 476 (1228)
T ss_pred eeechhhh-cccHHHHHhcCCCc-----ccH---HHHHHHHHHc-----------------------cHHHH---HHhhH
Confidence 99999665 56999999996210 111 1111111110 01122 23477
Q ss_pred cccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHH
Q 000555 313 LCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETF 392 (1427)
Q Consensus 313 ~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~ 392 (1427)
+..||.+|++++. |||||||||+|||||+.+|+|||||||||+||++++..+.+.|++..+ |+|.|+..|.. .+.
T Consensus 477 ~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRL--StI 551 (1228)
T KOG0055|consen 477 DGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRL--STI 551 (1228)
T ss_pred HhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeeh--hhh
Confidence 8899999999885 999999999999999999999999999999999999999999998754 56655544443 456
Q ss_pred hhcCcEEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCCh-HHHH--HHhcCccchhccccCCCCCCcCCCHHHHHHHHH
Q 000555 393 DLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGV-ADFL--QEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFK 469 (1427)
Q Consensus 393 ~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~-ad~l--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1427)
+.+|+|++|++|+|++.|+++|+... . +. ++.. |+....++. ..... + ..++.....+
T Consensus 552 rnaD~I~v~~~G~IvE~G~h~ELi~~----------~-G~Y~~lv~~Q~~~~~~~~-~~~~~-~------~~~~~~~s~~ 612 (1228)
T KOG0055|consen 552 RNADKIAVMEEGKIVEQGTHDELIAL----------G-GIYSSLVRLQELEKAAED-EEEEE-S------LKEERSRSLK 612 (1228)
T ss_pred hccCEEEEEECCEEEEecCHHHHHhc----------c-chHHHHHHHHhhhhhhhc-ccccc-c------hhhhhhhccc
Confidence 67999999999999999999999862 1 11 1211 111111110 00000 0 0000000000
Q ss_pred hChhhHhHhhh-----c--cCCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-------H
Q 000555 470 DSRFGKALKSS-----L--SVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVA-------F 535 (1427)
Q Consensus 470 ~s~~~~~~~~~-----l--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~-------~ 535 (1427)
.+......... . ..+.+.....+. .......++|+.++.+ +.++.+.+.-.+..+ +
T Consensus 613 ~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~s~~~i~k~~--------~pe~~~l~lG~i~a~i~G~~~P~ 682 (1228)
T KOG0055|consen 613 SSSSSPSLSRGSNRSNLLSVKPEGEDPEEPV--SEEDEKVSFWRIFKLN--------KPEWPYLLLGSLGAAIRGATYPL 682 (1228)
T ss_pred cccccccccCCcccccccccccccccccccc--ccccccccHHHHHHhc--------cchhHHHHHHHHHHHHhhhhHHH
Confidence 00000000000 0 000000000000 1111334455554432 233333332222222 2
Q ss_pred HHHHHHHHhcccC-CCCCCccchhhHHHHHHHHHH----------HHHHHHhhhHHHHhhhhhHH---HHhhcCCCcchH
Q 000555 536 VGFVACTMFLRTR-LHPTDEKNGNLYLSCLFFAVV----------HMMFNGFSELPIMITRLPVF---YKQRDNYFHPAW 601 (1427)
Q Consensus 536 ~~li~gt~f~~~~-~~~~~~~~~~~~~g~lff~~~----------~~~~~~~~~~~~~~~~~~vf---~rqr~~~~y~~~ 601 (1427)
.+++++.++--.- .+++........++.+|.++. +.+|.-.++....-.|..+| .+|-..+|..+-
T Consensus 683 fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ 762 (1228)
T KOG0055|consen 683 FAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPE 762 (1228)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCc
Confidence 3333333321111 111111111112333333221 11222223332222333333 222222232211
Q ss_pred -HHHHHHHH-HHHHHHHHHHHHHHHHHhhccCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 000555 602 -AWSVASWI-LRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLL 679 (1427)
Q Consensus 602 -ay~la~~l-~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l 679 (1427)
+-.+..-+ .+.+ .+.+++- .-...+...++++.-.+.+|..++|-+.+
T Consensus 763 nsg~l~~RLa~Da~--~vr~~v~----------------------------~rl~~vv~~~~~~~~~iiiaf~~~W~lal 812 (1228)
T KOG0055|consen 763 NSGALSSRLATDAS--NVRAAVG----------------------------DRLSLVVQNIAAVIIGIIIAFIYGWRLAL 812 (1228)
T ss_pred cchHHHHHHhcchH--HHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 1111 0111100 00111111222222222233333222222
Q ss_pred HHHH------HhhccccC-------CCchhHHH---H-----HHHHcHHHHHHHHHHHHhhccCcccccccccccccccc
Q 000555 680 IVFL------MGGFIIPK-------ESIKPWWS---W-----AYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIGYN 738 (1427)
Q Consensus 680 ~~~l------~~Gf~i~~-------~~ip~~~~---W-----~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~ 738 (1427)
+.+. ++++.-.. +....+-. - -.+-.--.+..+.-..+.|..
T Consensus 813 v~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~----------------- 875 (1228)
T KOG0055|consen 813 VVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKE----------------- 875 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHH-----------------
Confidence 1111 11110000 00000000 0 000000000000111111100
Q ss_pred eecccccCCCCccchhhHHHHHHHHHHHHH---HHHHHHHhcCcCCCcc-ccc-----------------cchhhh--hH
Q 000555 739 VLHTHSLPSGDYWYWIGVGALLLYSLLFNS---VVTLALAYLNPLRKSQ-VVI-----------------DDKEEN--SV 795 (1427)
Q Consensus 739 ~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~---l~~l~l~~~~~~~~~~-~~~-----------------~~~~~~--~~ 795 (1427)
.++...-.......|.+++..+...+.|.. .++........-.... ..+ ....+. ..
T Consensus 876 ~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~ 955 (1228)
T KOG0055|consen 876 ELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAK 955 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 000000000011234444444444433322 1122211111100000 000 000000 00
Q ss_pred HhhhhhhccccCCC-CCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCC
Q 000555 796 KMAKQQFEINTTSA-PESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSS 874 (1427)
Q Consensus 796 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~s 874 (1427)
..+......-+..+ -+.....+...+.-...|+|+||+|+|+.. ++.+||+|+|++|++|+.+||||||
T Consensus 956 ~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 956 IAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCC
Confidence 00000000000111 011111222334445579999999999754 3578999999999999999999999
Q ss_pred CCChhHHHhhhcCCCCCceeEEEEEECCccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHH
Q 000555 875 GAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRH 951 (1427)
Q Consensus 875 GaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~ 951 (1427)
||||||.+.+|-+..+ +..|.|.|||.+++. ..+|+++|.|.|+|.+|. .|++||+.|+. .+.+.++.
T Consensus 1026 GsGKSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-----~~vs~~eI- 1096 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-----EEVSEEEI- 1096 (1228)
T ss_pred CCCHHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-----CCCCHHHH-
Confidence 9999999999988655 468999999998765 457889999999999985 69999999981 12344432
Q ss_pred HHHHHHHHH-------cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000555 952 EFVEEVMRL-------VELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024 (1427)
Q Consensus 952 ~~v~~~l~~-------l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~ 1024 (1427)
.+.++. .+|.+-.||.+|..|. +||||||||++|||||++||+||||||+||+||+++.+.|+++|.+.
T Consensus 1097 ---i~Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1097 ---IEAAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred ---HHHHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence 233332 3677888999997765 69999999999999999999999999999999999999999999886
Q ss_pred HhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1025 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1025 ~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
. .|||.|+++|++| +++.+|.|.|+++ |++++.|..
T Consensus 1173 ~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1173 M-EGRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred h-cCCcEEEEecchh--hhhcCCEEEEEEC-CEEEecccH
Confidence 4 5899999999976 5788999999985 799999975
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-73 Score=734.31 Aligned_cols=738 Identities=21% Similarity=0.301 Sum_probs=423.3
Q ss_pred ccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCC
Q 000555 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 244 (1427)
...+.|+|||++|++|+++||+||.||||||||.+|.|+++. .+|+|.++| .++||||++|. .+.|
T Consensus 532 ~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~g----------siaYv~Q~pWI-~ngT 597 (1381)
T KOG0054|consen 532 SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNG----------SVAYVPQQPWI-QNGT 597 (1381)
T ss_pred CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcC----------eEEEeccccHh-hCCc
Confidence 344599999999999999999999999999999999999985 599999999 58999999954 5679
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCC-------cccccc
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGL-------DLCSET 317 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t 317 (1427)
|||||.|+..+. +++++++++.|+| +.+..|
T Consensus 598 vreNILFG~~~d------------------------------------------~~rY~~Vi~aC~L~~Dle~Lp~GD~T 635 (1381)
T KOG0054|consen 598 VRENILFGSPYD------------------------------------------EERYDKVIKACALKKDLEILPFGDLT 635 (1381)
T ss_pred HHHhhhcCcccc------------------------------------------HHHHHHHHHHccCHhHHhhcCCCCcc
Confidence 999999974331 1234555555555 356789
Q ss_pred ccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCcEEEEEecCCchhHHhhcC
Q 000555 318 VVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIV-KCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 318 ~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~-~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D 396 (1427)
.||++++ +|||||||||++|||+++++||++||+|.|++|+++..+|+ ++++.+.+ +||+|+++|| -+..+.+|
T Consensus 636 eIGErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~--~KT~ILVTHq--l~~L~~ad 710 (1381)
T KOG0054|consen 636 EIGERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLR--GKTVILVTHQ--LQFLPHAD 710 (1381)
T ss_pred eecCCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc--CCEEEEEeCc--hhhhhhCC
Confidence 9999998 59999999999999999999999999999999999999999 58877764 7999998886 47899999
Q ss_pred cEEEEeCCeEEEecChHHHHH---HHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChh
Q 000555 397 DLLLLSEGHLVYQGPRAEVLE---FFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRF 473 (1427)
Q Consensus 397 ~vilL~~G~iv~~G~~~~~~~---~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 473 (1427)
.|++|++|+|+.+|+++|+.+ .|+++ +.+....++..........+.. ....+. +..+..
T Consensus 711 ~Iivl~~G~I~~~Gty~el~~~~~~~~~l-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~-- 773 (1381)
T KOG0054|consen 711 QIIVLKDGKIVESGTYEELLKSGGDFAEL-------------AHEEESEQEEEASEKDLESGES-SRESES-RSLESL-- 773 (1381)
T ss_pred EEEEecCCeEecccCHHHHHhcchhHHHH-------------hhccchhhcccccccccccccc-ccchhh-hhhhhh--
Confidence 999999999999999999984 23322 0000000000000000000000 000000 000000
Q ss_pred hHhHhhhccCCCCCCC-CCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHH--HHHHHH-HHHHHHHHHhcccCC
Q 000555 474 GKALKSSLSVPYDKSK-CHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIF--RTCQVA-FVGFVACTMFLRTRL 549 (1427)
Q Consensus 474 ~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~--~~~~~~-~~~li~gt~f~~~~~ 549 (1427)
+...+. ....+.. ...........+.-.|..++.+++-. ..+.... -+.+.. .+..+....|+..+.
T Consensus 774 -~~~~~~--~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~------~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~ 844 (1381)
T KOG0054|consen 774 -SSEEEK--SKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAA------GGFLLVLLILLLFVLTQVLQIASNYWLSYWT 844 (1381)
T ss_pred -cccccc--cccccchhhHHHHHHHHhcCEeeHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000000 0000000 00000011123344556665554420 1111111 111111 122333444554444
Q ss_pred CCCCc-----cchhhHHHHHH-HHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000555 550 HPTDE-----KNGNLYLSCLF-FAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWS 623 (1427)
Q Consensus 550 ~~~~~-----~~~~~~~g~lf-f~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~ 623 (1427)
+.... .+...|+++.. +++...++..+..+..+..- -+.--.+.-.++..++.+
T Consensus 845 ~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~--------------------l~aS~~Lh~~ml~~Ilra 904 (1381)
T KOG0054|consen 845 DDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGG--------------------LKASRKLHDKLLNSILRA 904 (1381)
T ss_pred CCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhC
Confidence 33211 12222322211 11111111111111111000 001111223333444444
Q ss_pred HHHhhc-cCcCCchhHHHHHHHHH-----HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhH
Q 000555 624 CVVYFT-VGFAPETGRFFRHMFLL-----FSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPW 697 (1427)
Q Consensus 624 ~ivY~~-~gl~~~~~~F~~~~l~l-----~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~ 697 (1427)
.+.+|- +...+-..||-..+-.+ +........+..+++.+. .++...-.+.+.+..+
T Consensus 905 pm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~---vi~~~~P~fli~~~pl-------------- 967 (1381)
T KOG0054|consen 905 PMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV---VISYVTPWFLIAIIPL-------------- 967 (1381)
T ss_pred cchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH---HhhHHhHHHHHHHHHH--------------
Confidence 433332 11222233443332211 111111111111111111 1111110111111111
Q ss_pred HHHHHHHcHHHHHHHHHHHHhhccCcccc-cccccccccccceecccccC--------------------CCCccchh--
Q 000555 698 WSWAYWVSPLSYAQSAISVNEFAAARWKK-KSVIGDNTIGYNVLHTHSLP--------------------SGDYWYWI-- 754 (1427)
Q Consensus 698 ~~W~~~isp~~y~~~al~~nef~~~~~~~-~~~~~~~~~G~~~l~~~~~~--------------------~~~~~~w~-- 754 (1427)
.++||.-...|...+..+....+..-.. .........|...+++++.. ......|.
T Consensus 968 -~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~ 1046 (1381)
T KOG0054|consen 968 -GVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAV 1046 (1381)
T ss_pred -HHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 1122222223333333333322211000 00000111111111111100 00000122
Q ss_pred ----------------------------hHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhhhhhcccc
Q 000555 755 ----------------------------GVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQFEINT 806 (1427)
Q Consensus 755 ----------------------------~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1427)
.+|+.+.|++.++....++++....+++....+++..++.....+.....+.
T Consensus 1047 Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~ 1126 (1381)
T KOG0054|consen 1047 RLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEE 1126 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcC
Confidence 2455555556666666666666666666555555544443211110011111
Q ss_pred CCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhc
Q 000555 807 TSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLA 886 (1427)
Q Consensus 807 ~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~ 886 (1427)
..+|++||..| .|+|+|++.+|. ++...+|||||++|+|||++||||++|||||||+++|.
T Consensus 1127 ~~pp~~WP~~G--------~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF 1187 (1381)
T KOG0054|consen 1127 SRPPPSWPSKG--------EIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF 1187 (1381)
T ss_pred CCCCCCCCCCC--------eEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH
Confidence 11344555544 689999986653 22346899999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEECCccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCC
Q 000555 887 GRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963 (1427)
Q Consensus 887 g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L 963 (1427)
+..++ .+|+|.|||.++.+ ..+|++++.+||||.+|. -|||+||. +..+.++++ +.++|+..+|
T Consensus 1188 Rl~e~--~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLD------Pf~e~sD~~----IW~ALe~~~L 1254 (1381)
T KOG0054|consen 1188 RLVEP--AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLD------PFDEYSDDE----IWEALERCQL 1254 (1381)
T ss_pred HhcCc--cCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-CccccccC------cccccCHHH----HHHHHHHhCh
Confidence 98763 57999999999866 457889999999999986 49999874 223444444 5556666655
Q ss_pred ccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000555 964 DSL-------RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036 (1427)
Q Consensus 964 ~~~-------~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 1036 (1427)
.+. .|+.+. +++.++|.||||.+|+||||+++++||+|||+|+++|++|+..|+++||+..+ +||||+++|
T Consensus 1255 k~~v~~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAH 1332 (1381)
T KOG0054|consen 1255 KDVVSSLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAH 1332 (1381)
T ss_pred HHHHhhCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEee
Confidence 433 444554 45678999999999999999999999999999999999999999999999875 799999999
Q ss_pred CCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1037 QPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1037 ~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
+.+ ....+|||+||++ |+++++|++
T Consensus 1333 Rl~--TVmd~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1333 RLN--TVMDSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred ccc--hhhhcCeEEEeeC-CeEeecCCh
Confidence 976 4556799999997 567766665
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-69 Score=722.77 Aligned_cols=224 Identities=25% Similarity=0.380 Sum_probs=192.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++. +++.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4789999876631 135699999999999999999999999999999999998653 589999999886
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000555 906 EQ--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 983 (1427)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+.+|..++ .|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 42 2345679999999999999999999998776642 3344455678899999999998888874 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|+|+++ ++...|||+++|.+ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999985 67788999999986 68888887
Q ss_pred CCCCchhHHHHHH
Q 000555 1064 LGVHSKTMIDYFQ 1076 (1427)
Q Consensus 1064 ~~~~~~~~~~yf~ 1076 (1427)
. +++..-|.
T Consensus 2154 ~----q~Lk~~~g 2162 (2272)
T TIGR01257 2154 I----QHLKSKFG 2162 (2272)
T ss_pred H----HHHHHHhC
Confidence 6 55655553
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-68 Score=724.69 Aligned_cols=211 Identities=24% Similarity=0.285 Sum_probs=176.2
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..|+|+||+++|+. +..++|+|||++|+|||++||+||||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 36999999988741 224699999999999999999999999999999999998663 57999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-------SLRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~ 974 (1427)
+.+ ..+|+++++|||++.+|+. |++|||.+.. +.+++ .+.++++..++. .-.|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHH----HHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 4578899999999999875 9999996531 22333 355666666553 3457777753
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||+||||||+++|+||+||||||+||++|++.|++.|++.. +++|||+++|+++ ....+|+|+||++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4899999999975 5667999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|++
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 678888875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-67 Score=714.61 Aligned_cols=211 Identities=22% Similarity=0.286 Sum_probs=175.9
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+||+++|+. +.+++|+|+|++|+|||++||+||||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 36999999998831 23468999999999999999999999999999999999866 357999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 974 (1427)
+.+ ..+|++++||||++.+|+. |++|||.+. .+.+++ .+.++++..++.+ -.|+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~------~~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPF------SEHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCC------CCCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 4578899999999999875 999999643 123333 3566666666543 356777754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4899999999975 5667999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|++
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 678887875
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=609.68 Aligned_cols=474 Identities=26% Similarity=0.343 Sum_probs=364.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-CCceeEEEECCeecCccc-------ccceEEEEccCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS-LKKSGNITYNGYKLDEFH-------VQRTSAYISQTDN 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~ 238 (1427)
.++++||||++.|||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++.... ..+.++|++|++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999876 346899999998764321 2367999999973
Q ss_pred --CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccc
Q 000555 239 --HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316 (1427)
Q Consensus 239 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 316 (1427)
+-|-+||.+-|.-..+..+.. .+ .+...++.++|+.+||++...
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~----------~~------------------------~ea~~~a~elL~~Vgl~~~~~ 147 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKG----------SR------------------------AEARKRAVELLEQVGLPDPER 147 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccc----------cH------------------------HHHHHHHHHHHHHcCCCChhh
Confidence 567789988887665544310 00 011234678999999987544
Q ss_pred cccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcC
Q 000555 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 317 t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D 396 (1427)
. +++++.|||||||||.||+||+.+|++|++|||||+||+.++.+|++.|+++.++.|.++|++ +|...-+.++||
T Consensus 148 ~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~I-THDl~Vva~~aD 223 (539)
T COG1123 148 R---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI-THDLGVVAELAD 223 (539)
T ss_pred h---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEE-cCCHHHHHHhcC
Confidence 3 678999999999999999999999999999999999999999999999999999999999985 677788899999
Q ss_pred cEEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHh
Q 000555 397 DLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKA 476 (1427)
Q Consensus 397 ~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 476 (1427)
+|+||++|++++.|+.+++... | ..||. +.
T Consensus 224 rv~Vm~~G~iVE~G~~~~i~~~--------p-------------------------~hpYT-----------------~~ 253 (539)
T COG1123 224 RVVVMYKGEIVETGPTEEILSN--------P-------------------------QHPYT-----------------RG 253 (539)
T ss_pred eEEEEECCEEEEecCHHHHHhc--------c-------------------------CCccc-----------------HH
Confidence 9999999999999999998641 0 01110 00
Q ss_pred HhhhccCCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 000555 477 LKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKN 556 (1427)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~ 556 (1427)
+... .|. .....
T Consensus 254 Ll~a--~p~---------------------------------------------------------------~~~~~--- 265 (539)
T COG1123 254 LLAA--VPR---------------------------------------------------------------LGDEK--- 265 (539)
T ss_pred HHhh--CCC---------------------------------------------------------------ccccc---
Confidence 0000 000 00000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCch
Q 000555 557 GNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPET 636 (1427)
Q Consensus 557 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~ 636 (1427)
T Consensus 266 -------------------------------------------------------------------------------- 265 (539)
T COG1123 266 -------------------------------------------------------------------------------- 265 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHH
Q 000555 637 GRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISV 716 (1427)
Q Consensus 637 ~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 716 (1427)
T Consensus 266 -------------------------------------------------------------------------------- 265 (539)
T COG1123 266 -------------------------------------------------------------------------------- 265 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCcccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHH
Q 000555 717 NEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVK 796 (1427)
Q Consensus 717 nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~ 796 (1427)
..+..
T Consensus 266 -----~~~~~---------------------------------------------------------------------- 270 (539)
T COG1123 266 -----IIRLP---------------------------------------------------------------------- 270 (539)
T ss_pred -----ccccc----------------------------------------------------------------------
Confidence 00000
Q ss_pred hhhhhhccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCC
Q 000555 797 MAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGA 876 (1427)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGa 876 (1427)
..... + ...-++.+|++..+..+..+. ....+...+++||||.+++||++||+|+|||
T Consensus 271 ---------~~~~~----------~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGs 328 (539)
T COG1123 271 ---------RRGPL----------R-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGS 328 (539)
T ss_pred ---------ccccc----------c-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCC
Confidence 00000 0 011367888876665433211 0112346789999999999999999999999
Q ss_pred ChhHHHhhhcCCCCCceeEEEEEECCccC--C---cccccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHH
Q 000555 877 GKTTLMDVLAGRKTGGYIEGDIKISGYPK--E---QSTFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQ 949 (1427)
Q Consensus 877 GKSTLl~~L~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~ 949 (1427)
|||||.++|+|...+ ..|.|.++|.+. + ....++.+-+++||+ .+.|.+||++.+.-...... .....+
T Consensus 329 GKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~--~~~~~~ 404 (539)
T COG1123 329 GKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG--GGSGAE 404 (539)
T ss_pred CHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc--ccchHH
Confidence 999999999998764 579999999762 1 123456777888876 67899999999987654432 223566
Q ss_pred HHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 000555 950 RHEFVEEVMRLVELDS-LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1027 (1427)
Q Consensus 950 ~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~- 1027 (1427)
+++++.++++.++|.. ..+.. +.+||||||||++|||||+.+|++|++|||||.||+..+..|.++|+++.++
T Consensus 405 ~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~ 479 (539)
T COG1123 405 RRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL 479 (539)
T ss_pred HHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh
Confidence 7778999999999985 34444 3689999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1028 g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|.|.|+++||.. -+...||||+||.+ |+++..||.
T Consensus 480 g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 480 GLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred CCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 999999999986 37778999999986 688888875
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=694.13 Aligned_cols=217 Identities=21% Similarity=0.335 Sum_probs=178.3
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc------------
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG------------ 892 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~------------ 892 (1427)
..|+|+||+|+|+.. ++.++|+|+|++|+||+.+||+||||||||||+++|.|..++.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999988531 1346999999999999999999999999999999999965531
Q ss_pred ----------------------------------------eeEEEEEECCccCCc---ccccceEEEEccCCCCCCCCCH
Q 000555 893 ----------------------------------------YIEGDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTV 929 (1427)
Q Consensus 893 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 929 (1427)
+.+|+|.+||.++.+ ..+|+.+|||+|++.+| +.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 147999999998754 45788999999999988 4799
Q ss_pred HHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000555 930 EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-------DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFM 1002 (1427)
Q Consensus 930 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illl 1002 (1427)
+|||.|+. .+.++++ ++++++..++ .+-.||.+|.. +..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDATRED----VKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 1233333 5555555544 44568889854 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhceEEEEecC---cE-EEEccCC
Q 000555 1003 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG---GR-VIYGGKL 1064 (1427)
Q Consensus 1003 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g---g~-~~~~g~~ 1064 (1427)
|||||+||+.+++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |+ ++..|+.
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 35899999999974 57789999999972 45 5577874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=691.86 Aligned_cols=211 Identities=20% Similarity=0.233 Sum_probs=176.5
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+||+++|+. +...+|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 46999999998852 12359999999999999999999999999999999999866 357999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 974 (1427)
+.+ ..+|+.++||||++.+|+. |++|||... .+.+++ .+.++++..++.+ -.|+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~------~~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPF------SQYSDE----EVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcc------cCCCHH----HHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 764 4578899999999999975 999999521 123333 3566777766643 357777753
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||+||||||+++|+||+||||||+||++++..|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4799999999975 5677999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|++
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 688888875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=680.05 Aligned_cols=211 Identities=24% Similarity=0.268 Sum_probs=176.9
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..|+|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999998742 23459999999999999999999999999999999999876 357999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 974 (1427)
+.. ..+|+.+|||||++.+|+. |++|||... .+.++ +.+.++++..++.+ -.|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4578899999999999875 999999531 12333 34667777777654 357777753
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 975 GSSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~-p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
+.+||||||||+||||||+++ |+||+||||||+||+.+++.|++.|++.. +++|||+|+|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 467999999999999999996 89999999999999999999999999875 4799999999964 677899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 6 688888875
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=678.80 Aligned_cols=210 Identities=22% Similarity=0.285 Sum_probs=176.1
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..|+|+||+++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|+|..+ .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999998852 23569999999999999999999999999999999999864 47999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 974 (1427)
+.. ..+|+.++||||++.+|+. |+||||... ...++ +.+.++++..+|.+ -.|+.+|.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~------~~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPY------EQWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcc------cCCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 764 4578899999999999975 999999532 12233 34667788777643 35677775
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
++.+||||||||+||||||+++|+||+||||||+||+.++..|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 446799999999999999999999999999999999999999999999875 4799999999974 5677999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|++
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 577777764
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-63 Score=630.01 Aligned_cols=490 Identities=21% Similarity=0.256 Sum_probs=354.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCc-------------c---cc-cce
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE-------------F---HV-QRT 229 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-------------~---~~-~~~ 229 (1427)
.++|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|..++. . .. ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999875 8999999874411 0 11 246
Q ss_pred EEEEccCC--CCCCCCCHHHHHHHHHHhc-CCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHH
Q 000555 230 SAYISQTD--NHIPELTVRETFDFAARWQ-GANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVL 306 (1427)
Q Consensus 230 ~~yv~Q~~--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l 306 (1427)
+|||+|++ .+++.+||+||+.++.+.. +.. +. +...++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~-----------~~------------------------~~~~~~~~~l 150 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS-----------RE------------------------EAMVEAKRML 150 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC-----------HH------------------------HHHHHHHHHH
Confidence 99999987 5788899999999976532 110 00 0112367789
Q ss_pred HHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Q 000555 307 KVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQ 386 (1427)
Q Consensus 307 ~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q 386 (1427)
+.+||++-. ..-++.+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.++.|+|||++ +|
T Consensus 151 ~~~gL~~~~--~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~i-tH 227 (623)
T PRK10261 151 DQVRIPEAQ--TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFI-TH 227 (623)
T ss_pred HHCCCCChh--hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEE-cC
Confidence 999996310 123455678999999999999999999999999999999999999999999999977668899885 56
Q ss_pred CchhHHhhcCcEEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHH
Q 000555 387 PPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAK 466 (1427)
Q Consensus 387 ~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1427)
....+.++||+|++|++|++++.|+++++.. .|.+....+++.
T Consensus 228 dl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~----------------------------- 270 (623)
T PRK10261 228 DMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLA----------------------------- 270 (623)
T ss_pred CHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhh-----------------------------
Confidence 6778889999999999999999999876531 000000000000
Q ss_pred HHHhChhhHhHhhhccCCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcc
Q 000555 467 AFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLR 546 (1427)
Q Consensus 467 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~ 546 (1427)
. .+
T Consensus 271 ~---------------~~-------------------------------------------------------------- 273 (623)
T PRK10261 271 A---------------VP-------------------------------------------------------------- 273 (623)
T ss_pred c---------------cC--------------------------------------------------------------
Confidence 0 00
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000555 547 TRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVV 626 (1427)
Q Consensus 547 ~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~iv 626 (1427)
.... ..+ . ..+
T Consensus 274 -~~~~--~~~-~--------------------------~~~--------------------------------------- 284 (623)
T PRK10261 274 -QLGA--MKG-L--------------------------DYP--------------------------------------- 284 (623)
T ss_pred -cccc--ccc-c--------------------------cCC---------------------------------------
Confidence 0000 000 0 000
Q ss_pred hhccCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcH
Q 000555 627 YFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSP 706 (1427)
Q Consensus 627 Y~~~gl~~~~~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp 706 (1427)
...+.
T Consensus 285 -----------------------------------------------------------------~~~~~---------- 289 (623)
T PRK10261 285 -----------------------------------------------------------------RRFPL---------- 289 (623)
T ss_pred -----------------------------------------------------------------ccccc----------
Confidence 00000
Q ss_pred HHHHHHHHHHHhhccCcccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCcccc
Q 000555 707 LSYAQSAISVNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVV 786 (1427)
Q Consensus 707 ~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~ 786 (1427)
... .. . ....
T Consensus 290 -------------~~~--~~-~--------------------------------------------------~~~~---- 299 (623)
T PRK10261 290 -------------ISL--EH-P--------------------------------------------------AKQE---- 299 (623)
T ss_pred -------------ccc--cc-c--------------------------------------------------cccC----
Confidence 000 00 0 0000
Q ss_pred ccchhhhhHHhhhhhhccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCe
Q 000555 787 IDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGV 866 (1427)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 866 (1427)
. ...+...+ .+ . ..++++|+++.++..... .+.....+.+|+||||+|++||
T Consensus 300 ----------~---------~~~~~~~~-~~-----~-~~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge 351 (623)
T PRK10261 300 ----------P---------PIEQDTVV-DG-----E-PILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGE 351 (623)
T ss_pred ----------c---------cccccccc-CC-----C-ceEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCC
Confidence 0 00000000 00 1 137899998776421000 0000012469999999999999
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcc------cccceEEEEccCC--CCCCCCCHHHHHHHHHh
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS------TFARISGYVEQND--IHSPQVTVEESLWFSAN 938 (1427)
Q Consensus 867 ~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~ 938 (1427)
++||+|+||||||||+++|+|..+ +.+|+|.++|.++... .+++.++||+|++ .++|.+||.|++.+...
T Consensus 352 ~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~ 429 (623)
T PRK10261 352 TLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLR 429 (623)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999865 3579999999865321 2456799999997 58899999999987643
Q ss_pred ccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 000555 939 LRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017 (1427)
Q Consensus 939 l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i 1017 (1427)
.. .....++..+.+.++++.++|. ...+..+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 430 ~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i 502 (623)
T PRK10261 430 VH--GLLPGKAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQI 502 (623)
T ss_pred Hc--CCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 32 1112344556788999999996 4566665 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1018 MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1018 ~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
++.|++++++ |.|||++||+++ .+...+|++++|++ |++++.|+.
T Consensus 503 ~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 503 INLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999765 899999999986 47778999999986 678888875
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=622.38 Aligned_cols=460 Identities=21% Similarity=0.316 Sum_probs=347.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +.+|+|.++|+++.... .++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 36999999999999999999999999999999999998852 24899999999875432 24569999999888899
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.++...... +. .... ....+++++++.+||++..+.
T Consensus 97 ~tv~e~l~~~~~~~~~--~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~----- 139 (506)
T PRK13549 97 LSVLENIFLGNEITPG--GI------MDYD------------------------AMYLRAQKLLAQLKLDINPAT----- 139 (506)
T ss_pred CcHHHHhhhccccccc--CC------cCHH------------------------HHHHHHHHHHHHcCCCCCccc-----
Confidence 9999999986432100 00 0000 001235778999999755444
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|+|++. |...++.++||+|++|+
T Consensus 140 ~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~t-H~~~~~~~~~d~v~~l~ 217 (506)
T PRK13549 140 PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYIS-HKLNEVKAISDTICVIR 217 (506)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CcHHHHHHhcCEEEEEE
Confidence 4557999999999999999999999999999999999999999999999865 488998865 55667888999999999
Q ss_pred CCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhcc
Q 000555 403 EGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLS 482 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 482 (1427)
+|++++.|+.+++.. .+..
T Consensus 218 ~G~i~~~~~~~~~~~--------------------------------------------~~~~----------------- 236 (506)
T PRK13549 218 DGRHIGTRPAAGMTE--------------------------------------------DDII----------------- 236 (506)
T ss_pred CCEEeeecccccCCH--------------------------------------------HHHH-----------------
Confidence 999998876443200 0000
Q ss_pred CCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHH
Q 000555 483 VPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLS 562 (1427)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 562 (1427)
.+ +. + ..
T Consensus 237 ------------------------------~~-----------------------------~~--~--~~---------- 243 (506)
T PRK13549 237 ------------------------------TM-----------------------------MV--G--RE---------- 243 (506)
T ss_pred ------------------------------HH-----------------------------hh--C--cC----------
Confidence 00 00 0 00
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHH
Q 000555 563 CLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRH 642 (1427)
Q Consensus 563 ~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~ 642 (1427)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccC
Q 000555 643 MFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAA 722 (1427)
Q Consensus 643 ~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 722 (1427)
.
T Consensus 244 ---------------------------------------------------~---------------------------- 244 (506)
T PRK13549 244 ---------------------------------------------------L---------------------------- 244 (506)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred cccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhhhhh
Q 000555 723 RWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQF 802 (1427)
Q Consensus 723 ~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1427)
. . .. + .
T Consensus 245 -----~--------------------~--------------------------~~-~--~-------------------- 250 (506)
T PRK13549 245 -----T--------------------A--------------------------LY-P--R-------------------- 250 (506)
T ss_pred -----c--------------------c--------------------------cc-c--c--------------------
Confidence 0 0 00 0 0
Q ss_pred ccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHH
Q 000555 803 EINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM 882 (1427)
Q Consensus 803 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl 882 (1427)
.. .. . + ...++++|+++.++. .+++++|+|+||+|++||++||+||||||||||+
T Consensus 251 ----~~-~~--~--~------~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl 305 (506)
T PRK13549 251 ----EP-HT--I--G------EVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELV 305 (506)
T ss_pred ----cc-cC--C--C------CceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHH
Confidence 00 00 0 0 013678888754421 0124589999999999999999999999999999
Q ss_pred hhhcCCCCCceeEEEEEECCccCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHhccCCc--CCCHHHHHHH
Q 000555 883 DVLAGRKTGGYIEGDIKISGYPKEQS----TFARISGYVEQND---IHSPQVTVEESLWFSANLRLSK--EVSKNQRHEF 953 (1427)
Q Consensus 883 ~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~e~l~~~~~l~~~~--~~~~~~~~~~ 953 (1427)
++|+|...+ +.+|+|.++|.+.... ..++.+||++|++ .+++.+||.||+.+........ ..+.++..+.
T Consensus 306 k~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 384 (506)
T PRK13549 306 QCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKT 384 (506)
T ss_pred HHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHH
Confidence 999997541 1479999999865321 2345689999985 4778999999998753211110 0123334456
Q ss_pred HHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000555 954 VEEVMRLVELD-SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032 (1427)
Q Consensus 954 v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 1032 (1427)
++++++.+++. +..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||
T Consensus 385 ~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 459 (506)
T PRK13549 385 ILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAII 459 (506)
T ss_pred HHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEE
Confidence 88999999996 4667766 47999999999999999999999999999999999999999999999988899999
Q ss_pred EEecCCCHHHHHhhceEEEEecCcEEEEccCCCC
Q 000555 1033 CTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGV 1066 (1427)
Q Consensus 1033 ~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~~ 1066 (1427)
+++|+++ ++.+.||++++|++ |+++..|+..+
T Consensus 460 ~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 460 VISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred EECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 9999986 57788999999986 67888776643
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=621.47 Aligned_cols=458 Identities=21% Similarity=0.311 Sum_probs=344.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 36999999999999999999999999999999999999875 899999999875432 23569999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.++........+. ..... .+...+++++++.+||++..+.
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~----~~~~~------------------------~~~~~~~~~~l~~~gl~~~~~~----- 141 (510)
T PRK09700 95 LTVLENLYIGRHLTKKVCGV----NIIDW------------------------REMRVRAAMMLLRVGLKVDLDE----- 141 (510)
T ss_pred CcHHHHhhhccccccccccc----cccCH------------------------HHHHHHHHHHHHHcCCCCCccc-----
Confidence 99999998753210000000 00000 0011236778999999765444
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++ +|...++.++||++++|+
T Consensus 142 ~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiiv-sHd~~~~~~~~d~v~~l~ 219 (510)
T PRK09700 142 KVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYI-SHKLAEIRRICDRYTVMK 219 (510)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE-eCCHHHHHHhCCEEEEEE
Confidence 45579999999999999999999999999999999999999999999998764 8899886 455677888999999999
Q ss_pred CCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhcc
Q 000555 403 EGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLS 482 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 482 (1427)
+|++++.|+++++.. .+.. +.
T Consensus 220 ~G~i~~~g~~~~~~~---------------~~~~-----------------------------~~--------------- 240 (510)
T PRK09700 220 DGSSVCSGMVSDVSN---------------DDIV-----------------------------RL--------------- 240 (510)
T ss_pred CCEEeeecchhhCCH---------------HHHH-----------------------------HH---------------
Confidence 999998887654310 0000 00
Q ss_pred CCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHH
Q 000555 483 VPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLS 562 (1427)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 562 (1427)
+. +. . .
T Consensus 241 -------------------------------------------------------------~~--~~--~-~-------- 246 (510)
T PRK09700 241 -------------------------------------------------------------MV--GR--E-L-------- 246 (510)
T ss_pred -------------------------------------------------------------hc--CC--C-c--------
Confidence 00 00 0 0
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHH
Q 000555 563 CLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRH 642 (1427)
Q Consensus 563 ~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~ 642 (1427)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK09700 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccC
Q 000555 643 MFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAA 722 (1427)
Q Consensus 643 ~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 722 (1427)
..
T Consensus 247 ------------------------------------------------------------------------------~~ 248 (510)
T PRK09700 247 ------------------------------------------------------------------------------QN 248 (510)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhhhhh
Q 000555 723 RWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQF 802 (1427)
Q Consensus 723 ~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1427)
... . ... .
T Consensus 249 ~~~--~---------------------------------------------------~~~--------------~----- 256 (510)
T PRK09700 249 RFN--A---------------------------------------------------MKE--------------N----- 256 (510)
T ss_pred ccc--c---------------------------------------------------ccc--------------c-----
Confidence 000 0 000 0
Q ss_pred ccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHH
Q 000555 803 EINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM 882 (1427)
Q Consensus 803 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl 882 (1427)
...+ . .+..++++|+++.+ ..+|+|+|++|++||+++|+||||||||||+
T Consensus 257 ----~~~~---~--------~~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl 306 (510)
T PRK09700 257 ----VSNL---A--------HETVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGRTELM 306 (510)
T ss_pred ----cccC---C--------CCcEEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCHHHHH
Confidence 0000 0 01136788886421 1379999999999999999999999999999
Q ss_pred hhhcCCCCCceeEEEEEECCccCCcc----cccceEEEEccC---CCCCCCCCHHHHHHHHHhcc---CCc--C-CCHHH
Q 000555 883 DVLAGRKTGGYIEGDIKISGYPKEQS----TFARISGYVEQN---DIHSPQVTVEESLWFSANLR---LSK--E-VSKNQ 949 (1427)
Q Consensus 883 ~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~---~~~~~~lTv~e~l~~~~~l~---~~~--~-~~~~~ 949 (1427)
++|+|..++ .+|+|.++|.+.... ..++.+|||+|+ ..+++.+||+|++.+....+ ... . .....
T Consensus 307 k~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 384 (510)
T PRK09700 307 NCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD 384 (510)
T ss_pred HHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH
Confidence 999997653 579999999865321 234568999998 45788999999998753211 000 0 11222
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 000555 950 RHEFVEEVMRLVELD-SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028 (1427)
Q Consensus 950 ~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g 1028 (1427)
..+.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|+||||||||+|||+.+...+++.|++++++|
T Consensus 385 ~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g 459 (510)
T PRK09700 385 EQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG 459 (510)
T ss_pred HHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCC
Confidence 335678999999996 6777776 4799999999999999999999999999999999999999999999998789
Q ss_pred CEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1029 RTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1029 ~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
.|||+++|++. .+.+.+|++++|++ |+++..++.
T Consensus 460 ~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 460 KVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999999985 57788999999987 577776654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=618.28 Aligned_cols=449 Identities=21% Similarity=0.325 Sum_probs=343.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999876 899999999874321 24569999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.|+....... + ..... ....+++++++.+||++..+.
T Consensus 94 ~tv~e~l~~~~~~~~~~-~------~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~----- 137 (501)
T PRK10762 94 LTIAENIFLGREFVNRF-G------RIDWK------------------------KMYAEADKLLARLNLRFSSDK----- 137 (501)
T ss_pred CcHHHHhhhcccccccc-C------ccCHH------------------------HHHHHHHHHHHHcCCCCCccC-----
Confidence 99999999864321100 0 00000 001235678999999865444
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .++|+|++. |..+++.++||+|++|+
T Consensus 138 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~s-Hd~~~~~~~~d~i~~l~ 215 (501)
T PRK10762 138 LVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYIS-HRLKEIFEICDDVTVFR 215 (501)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEe
Confidence 4456999999999999999999999999999999999999999999999865 488988865 55678889999999999
Q ss_pred CCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhcc
Q 000555 403 EGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLS 482 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 482 (1427)
+|+++..|+.+++.. ++..+.
T Consensus 216 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 236 (501)
T PRK10762 216 DGQFIAEREVADLTE--------------------------------------------DSLIEM--------------- 236 (501)
T ss_pred CCEEEEecCcCcCCH--------------------------------------------HHHHHH---------------
Confidence 999998775433200 000000
Q ss_pred CCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHH
Q 000555 483 VPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLS 562 (1427)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 562 (1427)
+. ...
T Consensus 237 -------------------------------------------------------------~~--~~~------------ 241 (501)
T PRK10762 237 -------------------------------------------------------------MV--GRK------------ 241 (501)
T ss_pred -------------------------------------------------------------hc--CCC------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHH
Q 000555 563 CLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRH 642 (1427)
Q Consensus 563 ~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~ 642 (1427)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccC
Q 000555 643 MFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAA 722 (1427)
Q Consensus 643 ~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 722 (1427)
.
T Consensus 242 ---------------------------------------------------~---------------------------- 242 (501)
T PRK10762 242 ---------------------------------------------------L---------------------------- 242 (501)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred cccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhhhhh
Q 000555 723 RWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQF 802 (1427)
Q Consensus 723 ~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1427)
. . . . . .
T Consensus 243 --~--~--------------------~-----------------------------~--------~--------~----- 248 (501)
T PRK10762 243 --E--D--------------------Q-----------------------------Y--------P--------R----- 248 (501)
T ss_pred --c--c--------------------c-----------------------------c--------c--------c-----
Confidence 0 0 0 0 0 0
Q ss_pred ccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHH
Q 000555 803 EINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM 882 (1427)
Q Consensus 803 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl 882 (1427)
...+ + .+..++++|++. .+|+|+||+|++||+++|+||||||||||+
T Consensus 249 ----~~~~---~--------~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl 295 (501)
T PRK10762 249 ----LDKA---P--------GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVSGLMGAGRTELM 295 (501)
T ss_pred ----cccC---C--------CCcEEEEeCccc------------------CCcccceEEEcCCcEEEEecCCCCCHHHHH
Confidence 0000 0 001367777741 268999999999999999999999999999
Q ss_pred hhhcCCCCCceeEEEEEECCccCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHhccCC---cCCCHHHHHH
Q 000555 883 DVLAGRKTGGYIEGDIKISGYPKEQS----TFARISGYVEQND---IHSPQVTVEESLWFSANLRLS---KEVSKNQRHE 952 (1427)
Q Consensus 883 ~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~e~l~~~~~l~~~---~~~~~~~~~~ 952 (1427)
++|+|... +.+|+|.++|.+.... ..++.+||++|++ .+++.+||.|++.+....... ...+.++..+
T Consensus 296 ~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 373 (501)
T PRK10762 296 KVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQ 373 (501)
T ss_pred HHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHH
Confidence 99999865 3579999999875321 2345699999995 577899999999875311100 0112233345
Q ss_pred HHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 000555 953 FVEEVMRLVELD-SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031 (1427)
Q Consensus 953 ~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tv 1031 (1427)
.++++++.+++. +..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+||
T Consensus 374 ~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tv 448 (501)
T PRK10762 374 AVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSI 448 (501)
T ss_pred HHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEE
Confidence 688999999995 5677766 4799999999999999999999999999999999999999999999998789999
Q ss_pred EEEecCCCHHHHHhhceEEEEecCcEEEEccCCC
Q 000555 1032 VCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 1032 i~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~ 1065 (1427)
|+++|++. .+.+.+|++++|++ |+++..|+..
T Consensus 449 iivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 480 (501)
T PRK10762 449 ILVSSEMP-EVLGMSDRILVMHE-GRISGEFTRE 480 (501)
T ss_pred EEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 99999986 57788999999986 6788877764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=617.76 Aligned_cols=466 Identities=24% Similarity=0.328 Sum_probs=347.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCccc------c-cceEEEEccCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEFH------V-QRTSAYISQTD 237 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~------~-~~~~~yv~Q~~ 237 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|. .+.+|+|.++|+++.... . ++.+||++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999852 124899999999875421 1 24799999986
Q ss_pred C--CCCCCCHHHHHHHHHHhc-CCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccc
Q 000555 238 N--HIPELTVRETFDFAARWQ-GANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLC 314 (1427)
Q Consensus 238 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 314 (1427)
. +++.+||+|++.+..... +.. +. ....+++++++.+||++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~gl~~~ 146 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR-----------RE------------------------AARGEILNCLDRVGIRQA 146 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC-----------HH------------------------HHHHHHHHHHHHCCCCCh
Confidence 4 567789999988653221 110 00 011236778999999641
Q ss_pred cccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhh
Q 000555 315 SETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL 394 (1427)
Q Consensus 315 ~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~ 394 (1427)
. ..-++.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++.++|||+++ |....+.++
T Consensus 147 ~--~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vt-Hd~~~~~~~ 223 (529)
T PRK15134 147 A--KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT-HNLSIVRKL 223 (529)
T ss_pred H--HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEc-CcHHHHHHh
Confidence 1 0124456679999999999999999999999999999999999999999999998766688998865 555677889
Q ss_pred cCcEEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhh
Q 000555 395 FDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFG 474 (1427)
Q Consensus 395 ~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 474 (1427)
||+|++|++|++++.|+++++... |. . .
T Consensus 224 ~dri~~l~~G~i~~~g~~~~~~~~--------~~-------------------------~--------~----------- 251 (529)
T PRK15134 224 ADRVAVMQNGRCVEQNRAATLFSA--------PT-------------------------H--------P----------- 251 (529)
T ss_pred cCEEEEEECCEEEEeCCHHHHhhC--------CC-------------------------C--------H-----------
Confidence 999999999999999987655310 00 0 0
Q ss_pred HhHhhhccCCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 000555 475 KALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDE 554 (1427)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~ 554 (1427)
. .+.+ + .
T Consensus 252 ---------------------------------~----~~~~----------------------------~--~------ 258 (529)
T PRK15134 252 ---------------------------------Y----TQKL----------------------------L--N------ 258 (529)
T ss_pred ---------------------------------H----HHHH----------------------------H--H------
Confidence 0 0000 0 0
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCC
Q 000555 555 KNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAP 634 (1427)
Q Consensus 555 ~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~ 634 (1427)
T Consensus 259 -------------------------------------------------------------------------------- 258 (529)
T PRK15134 259 -------------------------------------------------------------------------------- 258 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHH
Q 000555 635 ETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAI 714 (1427)
Q Consensus 635 ~~~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 714 (1427)
.
T Consensus 259 ---------------------------~---------------------------------------------------- 259 (529)
T PRK15134 259 ---------------------------S---------------------------------------------------- 259 (529)
T ss_pred ---------------------------h----------------------------------------------------
Confidence 0
Q ss_pred HHHhhccCcccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhh
Q 000555 715 SVNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENS 794 (1427)
Q Consensus 715 ~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~ 794 (1427)
.. . . .+
T Consensus 260 -------------~~-~----~-----------------------------------------~~--------------- 265 (529)
T PRK15134 260 -------------EP-S----G-----------------------------------------DP--------------- 265 (529)
T ss_pred -------------Cc-c----c-----------------------------------------cc---------------
Confidence 00 0 0 00
Q ss_pred HHhhhhhhccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccc-hhccCCCcccceeccceeeEEeCCeEEEEEcC
Q 000555 795 VKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQA-MRSQGIPEKKLQLLSNVSGVFSPGVLTALVGS 873 (1427)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~ 873 (1427)
. ..+ .. + .+ .++++|+++.++.... .+ -..+.+.+|+|||++|++||++||+||
T Consensus 266 --~----------~~~--~~--~-----~~-~l~~~~l~~~~~~~~~~~~---~~~~~~~il~~isl~i~~Ge~~~i~G~ 320 (529)
T PRK15134 266 --V----------PLP--EP--A-----SP-LLDVEQLQVAFPIRKGILK---RTVDHNVVVKNISFTLRPGETLGLVGE 320 (529)
T ss_pred --c----------ccC--CC--C-----CC-cccccCcEEEeecCccccc---cccccceeeecceeEEcCCCEEEEECC
Confidence 0 000 00 0 00 2577787766531100 00 000134699999999999999999999
Q ss_pred CCCChhHHHhhhcCCCCCceeEEEEEECCccCCcc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCC
Q 000555 874 SGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS------TFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEV 945 (1427)
Q Consensus 874 sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~ 945 (1427)
||||||||+++|+|..+ .+|+|.++|.++... .+++.+||++|++ .+++.+||+|++.+....+.. ..
T Consensus 321 nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~ 396 (529)
T PRK15134 321 SGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TL 396 (529)
T ss_pred CCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cC
Confidence 99999999999999763 479999999865321 1345689999996 478889999999886533211 12
Q ss_pred CHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000555 946 SKNQRHEFVEEVMRLVELD-SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024 (1427)
Q Consensus 946 ~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~ 1024 (1427)
+..+.++.++++++.++|. ...+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus 397 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 471 (529)
T PRK15134 397 SAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471 (529)
T ss_pred ChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHH
Confidence 2334456788999999997 4566655 479999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1025 VDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1025 ~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
+++ |+|||+++|++. .+.+.+|++++|++ |+++..|+.
T Consensus 472 ~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 472 QQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 865 899999999975 46778999999986 578887764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=615.73 Aligned_cols=445 Identities=23% Similarity=0.298 Sum_probs=341.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEECC-----------------------eec
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKL--DSSLKKSGNITYNG-----------------------YKL 221 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G-----------------------~~~ 221 (1427)
+++|+|+|+++++|++++|+|||||||||||++|+|.. +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999996 454 89999972 221
Q ss_pred C-------c------ccccceEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHH
Q 000555 222 D-------E------FHVQRTSAYISQT-DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287 (1427)
Q Consensus 222 ~-------~------~~~~~~~~yv~Q~-~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 287 (1427)
. . ...++.++|++|+ +.+++.+||+||+.|+....+.. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~-----------~~--------------- 143 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE-----------GK--------------- 143 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC-----------HH---------------
Confidence 0 0 0124569999997 67888899999999875432210 00
Q ss_pred HhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHH
Q 000555 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVK 367 (1427)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~ 367 (1427)
+...+++++++.+||++.. ++.+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+
T Consensus 144 ---------~~~~~~~~~l~~~gl~~~~-----~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 209 (520)
T TIGR03269 144 ---------EAVGRAVDLIEMVQLSHRI-----THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN 209 (520)
T ss_pred ---------HHHHHHHHHHHHcCChhhh-----hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH
Confidence 0012367789999997543 34456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhc
Q 000555 368 CLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQ 447 (1427)
Q Consensus 368 ~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~ 447 (1427)
.|++++++.|+|||++. |....+.++||+|++|++|++++.|+++++.+.+.
T Consensus 210 ~l~~l~~~~g~tviivt-Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~--------------------------- 261 (520)
T TIGR03269 210 ALEEAVKASGISMVLTS-HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM--------------------------- 261 (520)
T ss_pred HHHHHHHhcCcEEEEEe-CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH---------------------------
Confidence 99999776688998865 55567778999999999999988776654311000
Q ss_pred cccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhccCCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHH
Q 000555 448 YWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYI 527 (1427)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~ 527 (1427)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHH
Q 000555 528 FRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVAS 607 (1427)
Q Consensus 528 ~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~ 607 (1427)
. . .
T Consensus 262 -----------------~--~-----~----------------------------------------------------- 264 (520)
T TIGR03269 262 -----------------E--G-----V----------------------------------------------------- 264 (520)
T ss_pred -----------------h--h-----c-----------------------------------------------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhc
Q 000555 608 WILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGF 687 (1427)
Q Consensus 608 ~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf 687 (1427)
.
T Consensus 265 -------------------------~------------------------------------------------------ 265 (520)
T TIGR03269 265 -------------------------S------------------------------------------------------ 265 (520)
T ss_pred -------------------------h------------------------------------------------------
Confidence 0
Q ss_pred cccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccCcccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHH
Q 000555 688 IIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFN 767 (1427)
Q Consensus 688 ~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~ 767 (1427)
.+
T Consensus 266 -----~~------------------------------------------------------------------------- 267 (520)
T TIGR03269 266 -----EV------------------------------------------------------------------------- 267 (520)
T ss_pred -----hh-------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhcCcCCCccccccchhhhhHHhhhhhhccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCC
Q 000555 768 SVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGI 847 (1427)
Q Consensus 768 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 847 (1427)
... . ..+ . + ...++++|+++.++..
T Consensus 268 -------------~~~-------------~----------~~~---~--~------~~~l~~~~l~~~~~~~-------- 292 (520)
T TIGR03269 268 -------------EKE-------------C----------EVE---V--G------EPIIKVRNVSKRYISV-------- 292 (520)
T ss_pred -------------ccc-------------c----------ccC---C--C------CceEEEeccEEEeccC--------
Confidence 000 0 000 0 0 0136888888766310
Q ss_pred CcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEEC-Ccc---CCc------ccccceEEEE
Q 000555 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS-GYP---KEQ------STFARISGYV 917 (1427)
Q Consensus 848 ~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~---~~~------~~~~~~~gyv 917 (1427)
..+++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+ ... ...++.+||+
T Consensus 293 ~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v 370 (520)
T TIGR03269 293 DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGIL 370 (520)
T ss_pred CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHHHHhhhEEEE
Confidence 0123469999999999999999999999999999999999865 357999996 532 111 1234568999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-----cccccccCCCCCCCCHHHHHHHHHHHH
Q 000555 918 EQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-----LRDALVGFPGSSGLSTEQRKRLTIAVE 992 (1427)
Q Consensus 918 ~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~vg~~~~~~LSgGqrqrl~ia~a 992 (1427)
+|++.+++.+||+|++.+...+. .+.+..++.++++++.++|.+ ..++.+ ..|||||||||+||+|
T Consensus 371 ~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~~LSgGq~qrv~lara 441 (520)
T TIGR03269 371 HQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP-----DELSEGERHRVALAQV 441 (520)
T ss_pred ccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh-----hhCCHHHHHHHHHHHH
Confidence 99998899999999998764321 122333456888999999975 345554 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 993 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 993 L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|+.+|++|+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+.+.+|++++|++ |+++..|+.
T Consensus 442 l~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 442 LIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999764 899999999986 57778999999986 677777764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=611.47 Aligned_cols=453 Identities=20% Similarity=0.275 Sum_probs=341.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999999876 899999999875432 12469999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.|+.... . ....+++++++.+||++..+.
T Consensus 101 ~tv~e~l~~~~~~~--------------~-------------------------~~~~~~~~~l~~~~l~~~~~~----- 136 (510)
T PRK15439 101 LSVKENILFGLPKR--------------Q-------------------------ASMQKMKQLLAALGCQLDLDS----- 136 (510)
T ss_pred CcHHHHhhcccccc--------------h-------------------------HHHHHHHHHHHHcCCCccccC-----
Confidence 99999998852100 0 001235678999999765444
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++. |...++.++||+|++|+
T Consensus 137 ~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivt-Hd~~~~~~~~d~i~~l~ 214 (510)
T PRK15439 137 SAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFIS-HKLPEIRQLADRISVMR 214 (510)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEE
Confidence 4456999999999999999999999999999999999999999999999865 488998864 55667889999999999
Q ss_pred CCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhcc
Q 000555 403 EGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLS 482 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 482 (1427)
+|++++.|+++++... +.+ +.+.
T Consensus 215 ~G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~------------- 237 (510)
T PRK15439 215 DGTIALSGKTADLSTD---------------DII-----------------------------QAIT------------- 237 (510)
T ss_pred CCEEEEecChHHcCHH---------------HHH-----------------------------HHHh-------------
Confidence 9999999987654210 000 0000
Q ss_pred CCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHH
Q 000555 483 VPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLS 562 (1427)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 562 (1427)
..... .....
T Consensus 238 ---------------------------------------------------------------~~~~~-~~~~~------ 247 (510)
T PRK15439 238 ---------------------------------------------------------------PAARE-KSLSA------ 247 (510)
T ss_pred ---------------------------------------------------------------Ccccc-ccccc------
Confidence 00000 00000
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHH
Q 000555 563 CLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRH 642 (1427)
Q Consensus 563 ~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~ 642 (1427)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccC
Q 000555 643 MFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAA 722 (1427)
Q Consensus 643 ~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 722 (1427)
..+
T Consensus 248 ---------------------------------------------------~~~-------------------------- 250 (510)
T PRK15439 248 ---------------------------------------------------SQK-------------------------- 250 (510)
T ss_pred ---------------------------------------------------ccc--------------------------
Confidence 000
Q ss_pred cccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhhhhh
Q 000555 723 RWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQF 802 (1427)
Q Consensus 723 ~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1427)
.. ..+ + .
T Consensus 251 -~~-----------------~~~---------------------------------~--~-------------------- 257 (510)
T PRK15439 251 -LW-----------------LEL---------------------------------P--G-------------------- 257 (510)
T ss_pred -cc-----------------ccc---------------------------------c--c--------------------
Confidence 00 000 0 0
Q ss_pred ccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHH
Q 000555 803 EINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM 882 (1427)
Q Consensus 803 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl 882 (1427)
. .... + .+ +..++++|++. .+|+|||++|++||++||+||||||||||+
T Consensus 258 --~-~~~~---~-~~------~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl 306 (510)
T PRK15439 258 --N-RRQQ---A-AG------APVLTVEDLTG------------------EGFRNISLEVRAGEILGLAGVVGAGRTELA 306 (510)
T ss_pred --c-cccc---C-CC------CceEEEeCCCC------------------CCccceeEEEcCCcEEEEECCCCCCHHHHH
Confidence 0 0000 0 00 11367777751 148999999999999999999999999999
Q ss_pred hhhcCCCCCceeEEEEEECCccCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHH
Q 000555 883 DVLAGRKTGGYIEGDIKISGYPKEQS----TFARISGYVEQND---IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVE 955 (1427)
Q Consensus 883 ~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~ 955 (1427)
++|+|...+ .+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++......+..........++.++
T Consensus 307 ~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~ 384 (510)
T PRK15439 307 ETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLE 384 (510)
T ss_pred HHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHH
Confidence 999997653 479999999865431 1235689999984 4788899999986421111110011222345688
Q ss_pred HHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 000555 956 EVMRLVELD-SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1034 (1427)
Q Consensus 956 ~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~ 1034 (1427)
++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|++++++|.|||++
T Consensus 385 ~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIiv 459 (510)
T PRK15439 385 RYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFI 459 (510)
T ss_pred HHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999997 6677766 4799999999999999999999999999999999999999999999998889999999
Q ss_pred ecCCCHHHHHhhceEEEEecCcEEEEccCCC
Q 000555 1035 IHQPSIDIFEAFDELLLMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 1035 ~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~ 1065 (1427)
+|++. .+.+.||++++|++ |+++..|..+
T Consensus 460 sHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 460 SSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred CCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99986 57788999999986 6788777653
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-62 Score=609.07 Aligned_cols=460 Identities=19% Similarity=0.283 Sum_probs=343.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|. +.+|+|.++|+++.... .++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46999999999999999999999999999999999998752 13899999999875432 23569999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.++....... +. .... ....+++++++.+||++..+ ++
T Consensus 93 ~tv~~~l~~~~~~~~~~-~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~----~~ 137 (500)
T TIGR02633 93 LSVAENIFLGNEITLPG-GR------MAYN------------------------AMYLRAKNLLRELQLDADNV----TR 137 (500)
T ss_pred CcHHHHHHhhccccccc-cc------cCHH------------------------HHHHHHHHHHHHcCCCCCcc----cC
Confidence 99999998864321000 00 0000 00123567899999975321 23
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++++ .|+|||++. |...++.+.||+|++|+
T Consensus 138 ~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiit-Hd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 138 PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYIS-HKLNEVKAVCDTICVIR 215 (500)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe-CcHHHHHHhCCEEEEEe
Confidence 4567999999999999999999999999999999999999999999999865 588988864 55678889999999999
Q ss_pred CCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhcc
Q 000555 403 EGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLS 482 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 482 (1427)
+|++++.|+.+++.. +...
T Consensus 216 ~G~i~~~~~~~~~~~--------------------------------------------~~~~----------------- 234 (500)
T TIGR02633 216 DGQHVATKDMSTMSE--------------------------------------------DDII----------------- 234 (500)
T ss_pred CCeEeeecCcccCCH--------------------------------------------HHHH-----------------
Confidence 999987654321000 0000
Q ss_pred CCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHH
Q 000555 483 VPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLS 562 (1427)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 562 (1427)
. .+. + .
T Consensus 235 ------------------------------~-----------------------------~~~--~---~---------- 240 (500)
T TIGR02633 235 ------------------------------T-----------------------------MMV--G---R---------- 240 (500)
T ss_pred ------------------------------H-----------------------------HHh--C---c----------
Confidence 0 000 0 0
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHH
Q 000555 563 CLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRH 642 (1427)
Q Consensus 563 ~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~ 642 (1427)
+
T Consensus 241 ------------------------~------------------------------------------------------- 241 (500)
T TIGR02633 241 ------------------------E------------------------------------------------------- 241 (500)
T ss_pred ------------------------c-------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccC
Q 000555 643 MFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAA 722 (1427)
Q Consensus 643 ~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 722 (1427)
.
T Consensus 242 ---------------------------------------------------~---------------------------- 242 (500)
T TIGR02633 242 ---------------------------------------------------I---------------------------- 242 (500)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred cccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhhhhh
Q 000555 723 RWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQF 802 (1427)
Q Consensus 723 ~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1427)
. . .. . .
T Consensus 243 -----~--------------------~-----------------------------~~-------~--------~----- 248 (500)
T TIGR02633 243 -----T--------------------S-----------------------------LY-------P--------H----- 248 (500)
T ss_pred -----c--------------------c-----------------------------cc-------c--------c-----
Confidence 0 0 00 0 0
Q ss_pred ccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHH
Q 000555 803 EINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM 882 (1427)
Q Consensus 803 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl 882 (1427)
...+ . + +..++++|+++.+.. .+++.+|+|+||+|++||+++|+|||||||||||
T Consensus 249 ----~~~~---~--~------~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl 303 (500)
T TIGR02633 249 ----EPHE---I--G------DVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELV 303 (500)
T ss_pred ----cccC---C--C------CceEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHH
Confidence 0000 0 0 013678888754310 0124589999999999999999999999999999
Q ss_pred hhhcCCCCCceeEEEEEECCccCCc----ccccceEEEEccCC---CCCCCCCHHHHHHHHHh--ccCCcCCCHHHHHHH
Q 000555 883 DVLAGRKTGGYIEGDIKISGYPKEQ----STFARISGYVEQND---IHSPQVTVEESLWFSAN--LRLSKEVSKNQRHEF 953 (1427)
Q Consensus 883 ~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~e~l~~~~~--l~~~~~~~~~~~~~~ 953 (1427)
++|+|..++ +.+|+|.++|.+... ...++.+||++|+. .+++.+||+|++.+... ............++.
T Consensus 304 ~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (500)
T TIGR02633 304 QALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQI 382 (500)
T ss_pred HHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHH
Confidence 999998642 147999999987632 12356789999995 57899999999987532 110001122334466
Q ss_pred HHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000555 954 VEEVMRLVELDS-LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032 (1427)
Q Consensus 954 v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 1032 (1427)
++++++.+++.+ ..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||
T Consensus 383 ~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 457 (500)
T TIGR02633 383 IGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457 (500)
T ss_pred HHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEE
Confidence 889999999964 466665 47999999999999999999999999999999999999999999999988899999
Q ss_pred EEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1033 CTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1033 ~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
+++|+++ ++.+.+|++++|++ |+++..++.
T Consensus 458 ivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 458 VVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred EECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 9999986 57788999999986 577776654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-62 Score=607.20 Aligned_cols=451 Identities=20% Similarity=0.298 Sum_probs=340.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc----cccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF----HVQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999875 89999999987532 134679999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.++...... +. .... +...+++++++.+||++..+ +
T Consensus 94 ~tv~~~l~~~~~~~~~--~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~-----~ 136 (501)
T PRK11288 94 MTVAENLYLGQLPHKG--GI------VNRR------------------------LLNYEAREQLEHLGVDIDPD-----T 136 (501)
T ss_pred CCHHHHHHhccccccc--CC------CCHH------------------------HHHHHHHHHHHHcCCCCCcC-----C
Confidence 9999999985321000 00 0000 00123567899999975443 3
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++++ .|+|+|++. |...++.++||+|++|+
T Consensus 137 ~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiit-Hd~~~~~~~~d~i~~l~ 214 (501)
T PRK11288 137 PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVS-HRMEEIFALCDAITVFK 214 (501)
T ss_pred chhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe-CCHHHHHHhCCEEEEEE
Confidence 4567999999999999999999999999999999999999999999999865 488998865 45567889999999999
Q ss_pred CCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhcc
Q 000555 403 EGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLS 482 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 482 (1427)
+|+++..++..+. .+.++..+.
T Consensus 215 ~G~i~~~~~~~~~-------------------------------------------~~~~~~~~~--------------- 236 (501)
T PRK11288 215 DGRYVATFDDMAQ-------------------------------------------VDRDQLVQA--------------- 236 (501)
T ss_pred CCEEEeecCcccc-------------------------------------------CCHHHHHHH---------------
Confidence 9999754321100 000000000
Q ss_pred CCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHHH
Q 000555 483 VPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLS 562 (1427)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 562 (1427)
+. . ..
T Consensus 237 -------------------------------------------------------------~~--~--~~---------- 241 (501)
T PRK11288 237 -------------------------------------------------------------MV--G--RE---------- 241 (501)
T ss_pred -------------------------------------------------------------hc--C--CC----------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHHH
Q 000555 563 CLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRH 642 (1427)
Q Consensus 563 ~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~~ 642 (1427)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhccC
Q 000555 643 MFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAA 722 (1427)
Q Consensus 643 ~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 722 (1427)
.
T Consensus 242 ---------------------------------------------------~---------------------------- 242 (501)
T PRK11288 242 ---------------------------------------------------I---------------------------- 242 (501)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred cccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhhhhh
Q 000555 723 RWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQF 802 (1427)
Q Consensus 723 ~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1427)
. . . ..
T Consensus 243 -----~---------------~----~----------------------------~~----------------------- 247 (501)
T PRK11288 243 -----G---------------D----I----------------------------YG----------------------- 247 (501)
T ss_pred -----c---------------c----c----------------------------cc-----------------------
Confidence 0 0 0 00
Q ss_pred ccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHH
Q 000555 803 EINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM 882 (1427)
Q Consensus 803 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl 882 (1427)
..+. + . .+..++++|+++ +.+++|+|++|++||++||+||||||||||+
T Consensus 248 -----~~~~--~-~------~~~~l~~~~~~~-----------------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl 296 (501)
T PRK11288 248 -----YRPR--P-L------GEVRLRLDGLKG-----------------PGLREPISFSVRAGEIVGLFGLVGAGRSELM 296 (501)
T ss_pred -----cccc--C-C------CCcEEEEecccc-----------------CCcccceeEEEeCCcEEEEEcCCCCCHHHHH
Confidence 0000 0 0 011367777752 1379999999999999999999999999999
Q ss_pred hhhcCCCCCceeEEEEEECCccCCc----ccccceEEEEccCC---CCCCCCCHHHHHHHHHhccC-CcC--CCHHHHHH
Q 000555 883 DVLAGRKTGGYIEGDIKISGYPKEQ----STFARISGYVEQND---IHSPQVTVEESLWFSANLRL-SKE--VSKNQRHE 952 (1427)
Q Consensus 883 ~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~e~l~~~~~l~~-~~~--~~~~~~~~ 952 (1427)
++|+|..+ +.+|+|.++|.+... ...++.++|++|++ .+++.+|+.|++.+...... ... ......++
T Consensus 297 k~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 374 (501)
T PRK11288 297 KLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAE 374 (501)
T ss_pred HHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHH
Confidence 99999765 357999999986532 12345789999985 48889999999987532111 000 12223345
Q ss_pred HHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 000555 953 FVEEVMRLVELD-SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031 (1427)
Q Consensus 953 ~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tv 1031 (1427)
.++++++.+++. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+++.|++++++|.||
T Consensus 375 ~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 449 (501)
T PRK11288 375 NADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAV 449 (501)
T ss_pred HHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEE
Confidence 678999999994 66777764 799999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCCHHHHHhhceEEEEecCcEEEEccCCCC
Q 000555 1032 VCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGV 1066 (1427)
Q Consensus 1032 i~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~~ 1066 (1427)
|+++|++. .+.+.+|++++|++ |++++.|..++
T Consensus 450 iivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 450 LFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred EEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 99999986 57788999999986 67888887653
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-61 Score=598.77 Aligned_cols=449 Identities=18% Similarity=0.265 Sum_probs=338.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999875 999999999875321 24679999999888899
Q ss_pred CCHHHHHHHHHH-hcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 243 LTVRETFDFAAR-WQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 243 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
+||+||+.++.. ..+.. .... ....+++++++.+|+++..+.
T Consensus 88 ~tv~~~l~~~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~---- 130 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF---------VDQD------------------------KMYRDTKAIFDELDIDIDPRA---- 130 (491)
T ss_pred CCHHHHhhcccccccccc---------cCHH------------------------HHHHHHHHHHHHcCCCCCccC----
Confidence 999999987531 11000 0000 001135678899999754444
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
.+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ .|+|+|++. |...++.++||+|++|
T Consensus 131 -~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~t-H~~~~~~~~~d~i~~l 207 (491)
T PRK10982 131 -KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYIS-HKMEEIFQLCDEITIL 207 (491)
T ss_pred -chhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe-cCHHHHHHhCCEEEEE
Confidence 4557999999999999999999999999999999999999999999999865 488998864 5567788999999999
Q ss_pred eCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhhc
Q 000555 402 SEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSL 481 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l 481 (1427)
++|+++..|+++++.. .+..+.
T Consensus 208 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~-------------- 229 (491)
T PRK10982 208 RDGQWIATQPLAGLTM--------------------------------------------DKIIAM-------------- 229 (491)
T ss_pred ECCEEEeecChhhCCH--------------------------------------------HHHHHH--------------
Confidence 9999998776543100 000000
Q ss_pred cCCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhHH
Q 000555 482 SVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYL 561 (1427)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~ 561 (1427)
+. +. .
T Consensus 230 --------------------------------------------------------------~~--~~--~--------- 234 (491)
T PRK10982 230 --------------------------------------------------------------MV--GR--S--------- 234 (491)
T ss_pred --------------------------------------------------------------Hh--CC--C---------
Confidence 00 00 0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHHH
Q 000555 562 SCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFR 641 (1427)
Q Consensus 562 g~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~~ 641 (1427)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcc
Q 000555 642 HMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAA 721 (1427)
Q Consensus 642 ~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~ 721 (1427)
.
T Consensus 235 ----------------------------------------------------~--------------------------- 235 (491)
T PRK10982 235 ----------------------------------------------------L--------------------------- 235 (491)
T ss_pred ----------------------------------------------------c---------------------------
Confidence 0
Q ss_pred CcccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhhhh
Q 000555 722 ARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQ 801 (1427)
Q Consensus 722 ~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1427)
. ... .
T Consensus 236 ------~-------------------------------------------------~~~-------~------------- 240 (491)
T PRK10982 236 ------T-------------------------------------------------QRF-------P------------- 240 (491)
T ss_pred ------c-------------------------------------------------ccc-------c-------------
Confidence 0 000 0
Q ss_pred hccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHH
Q 000555 802 FEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTL 881 (1427)
Q Consensus 802 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTL 881 (1427)
. +...+ .+..++++|+++. .+++|+|||+++++||+++|+||||||||||
T Consensus 241 ------~-~~~~~--------~~~~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTL 290 (491)
T PRK10982 241 ------D-KENKP--------GEVILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDI 290 (491)
T ss_pred ------c-ccCCC--------CCcEEEEeCcccc---------------cCcccceeeEEEeCCcEEEEecCCCCCHHHH
Confidence 0 00000 0113788888753 1248999999999999999999999999999
Q ss_pred HhhhcCCCCCceeEEEEEECCccCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHH--hccCCcC-CCHHHHH
Q 000555 882 MDVLAGRKTGGYIEGDIKISGYPKEQS----TFARISGYVEQND---IHSPQVTVEESLWFSA--NLRLSKE-VSKNQRH 951 (1427)
Q Consensus 882 l~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~e~l~~~~--~l~~~~~-~~~~~~~ 951 (1427)
+++|+|..+ +.+|+|.++|.++... ..++.++|++|+. .+++.+|+.++..+.. ....... .+.....
T Consensus 291 l~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (491)
T PRK10982 291 VETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK 368 (491)
T ss_pred HHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH
Confidence 999999765 3579999999876431 1245589999985 3678898887743321 0000001 1222334
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 000555 952 EFVEEVMRLVELD-SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030 (1427)
Q Consensus 952 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1030 (1427)
+.++++++.+++. +..++.+ ..||||||||++||++|+.+|+||||||||+|||+.++..+++.|+++.++|+|
T Consensus 369 ~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~t 443 (491)
T PRK10982 369 SDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443 (491)
T ss_pred HHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCE
Confidence 5678899999995 4556665 489999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1031 vi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
||++||+++ ++.+.+|++++|++ |+++..++.
T Consensus 444 vi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~ 475 (491)
T PRK10982 444 IIIISSEMP-ELLGITDRILVMSN-GLVAGIVDT 475 (491)
T ss_pred EEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcc
Confidence 999999986 57788999999986 566655543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=518.52 Aligned_cols=470 Identities=23% Similarity=0.345 Sum_probs=365.0
Q ss_pred ccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCcc---cc---c-ceEEEEcc
Q 000555 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEF---HV---Q-RTSAYISQ 235 (1427)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~---~~---~-~~~~yv~Q 235 (1427)
....++++|||.+++||.+||+|.||||||-..+.+.|+++.. ...+|+|.|+|+++-.. .. + ..|+.++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3567999999999999999999999999999999999998763 34589999999987432 12 2 47999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcc
Q 000555 236 TDN--HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDL 313 (1427)
Q Consensus 236 ~~~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 313 (1427)
+|. +-|-.|+..-|.-..++... +++ ...+.++-++|+..|+++
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg----------~~~------------------------~~Ar~r~lelL~~VgI~~ 146 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG----------LSR------------------------AAARARALELLELVGIPE 146 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc----------ccH------------------------HHHHHHHHHHHHHcCCCc
Confidence 984 56666877777665554311 111 111234667888999976
Q ss_pred ccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHh
Q 000555 314 CSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFD 393 (1427)
Q Consensus 314 ~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~ 393 (1427)
-... -+.++.+|||||||||.||.||+.+|++|+-||||++||.....+|.++|+++.++.|..+++ |+|+..-+-+
T Consensus 147 p~~r--l~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lf-ITHDL~iVr~ 223 (534)
T COG4172 147 PEKR--LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILF-ITHDLGIVRK 223 (534)
T ss_pred hhhh--hhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEE-EeccHHHHHH
Confidence 4332 256788999999999999999999999999999999999999999999999999999999998 4677888899
Q ss_pred hcCcEEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChh
Q 000555 394 LFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRF 473 (1427)
Q Consensus 394 ~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 473 (1427)
++|+|+||.+|+++++|+.+++.. .|.+ ||
T Consensus 224 ~ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pY----------------- 253 (534)
T COG4172 224 FADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PY----------------- 253 (534)
T ss_pred hhhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hH-----------------
Confidence 999999999999999999887642 1110 00
Q ss_pred hHhHhhhccCCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000555 474 GKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTD 553 (1427)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~ 553 (1427)
.|.++ .
T Consensus 254 ---------------------------------------Tr~Ll------------------------------~----- 259 (534)
T COG4172 254 ---------------------------------------TRKLL------------------------------A----- 259 (534)
T ss_pred ---------------------------------------HHHHH------------------------------h-----
Confidence 00000 0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcC
Q 000555 554 EKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFA 633 (1427)
Q Consensus 554 ~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~ 633 (1427)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHH
Q 000555 634 PETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSA 713 (1427)
Q Consensus 634 ~~~~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~a 713 (1427)
+
T Consensus 260 ----------------------------a--------------------------------------------------- 260 (534)
T COG4172 260 ----------------------------A--------------------------------------------------- 260 (534)
T ss_pred ----------------------------c---------------------------------------------------
Confidence 0
Q ss_pred HHHHhhccCcccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhh
Q 000555 714 ISVNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEEN 793 (1427)
Q Consensus 714 l~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~ 793 (1427)
.+
T Consensus 261 --------------eP---------------------------------------------------------------- 262 (534)
T COG4172 261 --------------EP---------------------------------------------------------------- 262 (534)
T ss_pred --------------CC----------------------------------------------------------------
Confidence 00
Q ss_pred hHHhhhhhhccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcC
Q 000555 794 SVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGS 873 (1427)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~ 873 (1427)
...+.. ..+..+.-++.+|++..++.+..+-.. ......++++||++.++||.+||+|.
T Consensus 263 -------------~g~~~p------~~~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGE 321 (534)
T COG4172 263 -------------SGDPPP------LPEDAPVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGE 321 (534)
T ss_pred -------------CCCCCC------CCCCCCceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEec
Confidence 000000 001112345666665555444332111 11235689999999999999999999
Q ss_pred CCCChhHHHhhhcCCCCCceeEEEEEECCccCCc------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCC
Q 000555 874 SGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ------STFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEV 945 (1427)
Q Consensus 874 sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~ 945 (1427)
||||||||-.+|.+...+ +|+|.++|.++.. ..+|+.+-.|+||+ .+.|.+||.+-+.-+.....+ ..
T Consensus 322 SGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~l 397 (534)
T COG4172 322 SGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KL 397 (534)
T ss_pred CCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CC
Confidence 999999999999997753 5999999998753 34677889999998 578999999998877665533 46
Q ss_pred CHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000555 946 SKNQRHEFVEEVMRLVELDSLR-DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024 (1427)
Q Consensus 946 ~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~ 1024 (1427)
+..++++++.++|+.+||++.. +.. +.++|||||||++|||||+-+|++++||||||+||-.-..+|+++|+++
T Consensus 398 s~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L 472 (534)
T COG4172 398 SAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472 (534)
T ss_pred CHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH
Confidence 8899999999999999998643 332 4689999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1025 VD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1025 ~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
.+ .|.+-++++||.. -+-.+||+|+||++ |+++..||.
T Consensus 473 Q~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 473 QQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 75 5899999999976 36778999999986 799999985
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-60 Score=588.64 Aligned_cols=445 Identities=20% Similarity=0.284 Sum_probs=326.7
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCC--C--
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNH--I-- 240 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~--~-- 240 (1427)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 5999999999999999999999999999999999999875 89999999765432 223568999997532 1
Q ss_pred ----CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccc
Q 000555 241 ----PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316 (1427)
Q Consensus 241 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 316 (1427)
..+||+|++.+... ...+++++++.+||++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~l~~~~l~~~~~ 130 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEVK-------------------------------------------DPARCEQLAQQFGITALLD 130 (490)
T ss_pred chhhccccHHHhcccchh-------------------------------------------HHHHHHHHHHHcCCHhhhh
Confidence 14577776643100 0113567889999976444
Q ss_pred cccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcC
Q 000555 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 317 t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D 396 (1427)
+.+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++. |...++.+.||
T Consensus 131 -----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~t-H~~~~~~~~~d 203 (490)
T PRK10938 131 -----RRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVL-NRFDEIPDFVQ 203 (490)
T ss_pred -----CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEe-CCHHHHHhhCC
Confidence 445569999999999999999999999999999999999999999999998764 88998865 45677889999
Q ss_pred cEEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHh
Q 000555 397 DLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKA 476 (1427)
Q Consensus 397 ~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 476 (1427)
+|++|++|+++.+|+++++... +.+... . .
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~~~---------------~~~~~~-----------------------------~-----~- 233 (490)
T PRK10938 204 FAGVLADCTLAETGEREEILQQ---------------ALVAQL-----------------------------A-----H- 233 (490)
T ss_pred EEEEEECCEEEEeCCHHHHhcc---------------hhhhhh-----------------------------h-----h-
Confidence 9999999999999887654210 000000 0 0
Q ss_pred HhhhccCCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 000555 477 LKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKN 556 (1427)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~ 556 (1427)
.+ .... .
T Consensus 234 ------------------------------------~~---------------------------------~~~~--~-- 240 (490)
T PRK10938 234 ------------------------------------SE---------------------------------QLEG--V-- 240 (490)
T ss_pred ------------------------------------hh---------------------------------ccCc--c--
Confidence 00 0000 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCch
Q 000555 557 GNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPET 636 (1427)
Q Consensus 557 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~ 636 (1427)
T Consensus 241 -------------------------------------------------------------------------------- 240 (490)
T PRK10938 241 -------------------------------------------------------------------------------- 240 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHH
Q 000555 637 GRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISV 716 (1427)
Q Consensus 637 ~~F~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 716 (1427)
..|
T Consensus 241 --------------------------------------------------------~~~--------------------- 243 (490)
T PRK10938 241 --------------------------------------------------------QLP--------------------- 243 (490)
T ss_pred --------------------------------------------------------ccC---------------------
Confidence 000
Q ss_pred HhhccCcccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHH
Q 000555 717 NEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVK 796 (1427)
Q Consensus 717 nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~ 796 (1427)
. . .+
T Consensus 244 -----------~------------------------------------------------------~----~~------- 247 (490)
T PRK10938 244 -----------E------------------------------------------------------P----DE------- 247 (490)
T ss_pred -----------c------------------------------------------------------c----cc-------
Confidence 0 0 00
Q ss_pred hhhhhhccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCC
Q 000555 797 MAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGA 876 (1427)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGa 876 (1427)
. .. +...+. ....++++|+++.++ ++.+|+|+||++++||+++|+|||||
T Consensus 248 ~---------~~-~~~~~~-------~~~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGs 297 (490)
T PRK10938 248 P---------SA-RHALPA-------NEPRIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGA 297 (490)
T ss_pred c---------cc-ccccCC-------CCceEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCC
Confidence 0 00 000000 011378999987652 24589999999999999999999999
Q ss_pred ChhHHHhhhcCCCCCceeEEEEEECCccCCc----ccccceEEEEccCCCCCC--CCCHHHHHHHHHhc--cCCcCCCHH
Q 000555 877 GKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ----STFARISGYVEQNDIHSP--QVTVEESLWFSANL--RLSKEVSKN 948 (1427)
Q Consensus 877 GKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~--~lTv~e~l~~~~~l--~~~~~~~~~ 948 (1427)
|||||+++|+|.... ..+|+|.++|.+... ...++.+||++|++.+++ ..|+++++.+.... ....... .
T Consensus 298 GKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 375 (490)
T PRK10938 298 GKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-D 375 (490)
T ss_pred CHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-H
Confidence 999999999996431 137999999976421 123567999999876543 35777766543210 1111111 2
Q ss_pred HHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000555 949 QRHEFVEEVMRLVELDS-LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027 (1427)
Q Consensus 949 ~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~ 1027 (1427)
+..+.++++++.++|.+ ..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|++++++
T Consensus 376 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~ 450 (490)
T PRK10938 376 RQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE 450 (490)
T ss_pred HHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 23456889999999987 777765 479999999999999999999999999999999999999999999999876
Q ss_pred C-CEEEEEecCCCHHHHH-hhceEEEEecCcEEEE
Q 000555 1028 G-RTVVCTIHQPSIDIFE-AFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 1028 g-~tvi~~~H~~~~~~~~-~~D~v~~l~~gg~~~~ 1060 (1427)
| .|||+++|+++ ++.+ .+|++++|++| +++.
T Consensus 451 ~~~tviivsHd~~-~~~~~~~d~v~~l~~G-~i~~ 483 (490)
T PRK10938 451 GETQLLFVSHHAE-DAPACITHRLEFVPDG-DIYR 483 (490)
T ss_pred CCcEEEEEecchh-hhhhhhheeEEEecCC-ceEE
Confidence 5 47999999976 4555 48999999875 5444
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-58 Score=573.61 Aligned_cols=199 Identities=20% Similarity=0.272 Sum_probs=163.8
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 589999987663 2458999999999999999999999999999999999765 35799999873
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000555 906 EQSTFARISGYVEQNDI--HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 982 (1427)
+.+||++|+.. +.+.+||+|++.+.. .. ....+.++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 45899999864 456799999986421 01 11134578899999994 5666665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||++||++. .+...+|++++|++|+.+.+.|
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g 518 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSG 518 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCC
Confidence 999999999999999999999999999999999999999886 459999999975 5677899999998754444777
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
+.
T Consensus 519 ~~ 520 (530)
T PRK15064 519 TY 520 (530)
T ss_pred CH
Confidence 54
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=571.57 Aligned_cols=201 Identities=22% Similarity=0.294 Sum_probs=163.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 489999987652 2468999999999999999999999999999999999765 35799998532
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000555 906 EQSTFARISGYVEQND-IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-LRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 983 (1427)
..+||++|+. .+++.+||+|++.+...... .... ...++++++.+++.+ ..+..+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 67889999999987643221 1111 123457899999964 456655 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEE-Ecc
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI-YGG 1062 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~-~~g 1062 (1427)
|||++||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|||+++|++. .+...+|++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---GCAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---CeEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 48999999975 5777899999998756655 555
Q ss_pred C
Q 000555 1063 K 1063 (1427)
Q Consensus 1063 ~ 1063 (1427)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=564.64 Aligned_cols=201 Identities=21% Similarity=0.294 Sum_probs=163.1
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 488999987652 2469999999999999999999999999999999999765 35799998542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000555 906 EQSTFARISGYVEQND-IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-LRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 983 (1427)
..+||++|+. .+++.+||.|++.+...... .... ...++++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 47888999999988643211 1111 123557899999964 456655 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEE-Ecc
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI-YGG 1062 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~-~~g 1062 (1427)
||||+||++|+.+|++|+|||||+|||+.+...+++.|+++. .|||+++|++. .+...+|++++|++||++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999975 4677899999998766655 555
Q ss_pred C
Q 000555 1063 K 1063 (1427)
Q Consensus 1063 ~ 1063 (1427)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=548.76 Aligned_cols=211 Identities=23% Similarity=0.288 Sum_probs=171.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ + ..|+++|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 478899886552 1 24899999999999999999999999999999999765 357999875
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..+..+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888999999999875311 111 124678999999988778776 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++|+ | ++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999975 4667899999996 4 55555553
Q ss_pred CCC---chhHHHHHHhc
Q 000555 1065 GVH---SKTMIDYFQAL 1078 (1427)
Q Consensus 1065 ~~~---~~~~~~yf~~~ 1078 (1427)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 321 13456677776
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=550.47 Aligned_cols=202 Identities=25% Similarity=0.326 Sum_probs=164.5
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+|++|++|+++||+|||||||||||++|+|... +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 489999987653 2468999999999999999999999999999999999765 35799988 4321
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 000555 906 EQSTFARISGYVEQND-IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGq 983 (1427)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5788999999998753210 011 1133577889999985 4556665 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe-cCcEEEEcc
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-RGGRVIYGG 1062 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-~gg~~~~~g 1062 (1427)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++||+.. .+...+|++++|. +|+...|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 469999999975 4667899999997 666667777
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=547.83 Aligned_cols=198 Identities=21% Similarity=0.310 Sum_probs=160.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+|++|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 489999987663 3468999999999999999999999999999999999765 35799998641
Q ss_pred CcccccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 000555 906 EQSTFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-LRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgG 982 (1427)
..+||++|+. .+.+..|+.+++.- .. .......+.++++.+++.. ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34566778776531 11 1122345788999999963 566666 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||+|+|++. .+...||++++|++|..+.|.|
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g 510 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDG 510 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCC
Confidence 999999999999999999999999999999999999999987 349999999975 4677899999998754334777
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
+.
T Consensus 511 ~~ 512 (638)
T PRK10636 511 DL 512 (638)
T ss_pred CH
Confidence 64
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=501.45 Aligned_cols=448 Identities=24% Similarity=0.382 Sum_probs=346.2
Q ss_pred ccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc----cceEEEEccCCCCC
Q 000555 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV----QRTSAYISQTDNHI 240 (1427)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~ 240 (1427)
...++|+|||++++|||+++|+|.||||||||+|+|+|.++|+ +|+|.++|++.....+ ..-|+.|.|+..++
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 3568999999999999999999999999999999999999986 9999999998865443 34589999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
|++||.|||-++...... .+. +.+ +....+...+|+.+|+....++.|+
T Consensus 96 p~LsVaeNifLgre~~~~-~g~------id~------------------------~~m~~~A~~~l~~lg~~~~~~~~v~ 144 (500)
T COG1129 96 PNLSVAENIFLGREPTRR-FGL------IDR------------------------KAMRRRARELLARLGLDIDPDTLVG 144 (500)
T ss_pred CCccHHHHhhcccccccC-CCc------cCH------------------------HHHHHHHHHHHHHcCCCCChhhhhh
Confidence 999999999887543221 000 000 0112246778999999654666666
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
+ ||+||||-|.|||||..+++|++||||||+|+...+.++++.++++. ..|.++|. ++|..+|+++.||+|.|
T Consensus 145 ~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~-ISHrl~Ei~~i~DritV 217 (500)
T COG1129 145 D-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIY-ISHRLDEVFEIADRITV 217 (500)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEE-EcCcHHHHHHhcCEEEE
Confidence 5 99999999999999999999999999999999999999999999986 46999998 57789999999999999
Q ss_pred EeCCeEEEecCh-HHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhh
Q 000555 401 LSEGHLVYQGPR-AEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKS 479 (1427)
Q Consensus 401 L~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 479 (1427)
|.+|+.+..++. ++.- .+++.
T Consensus 218 lRDG~~v~~~~~~~~~~--------------------------------------------~~~lv-------------- 239 (500)
T COG1129 218 LRDGRVVGTRPTAAETS--------------------------------------------EDELV-------------- 239 (500)
T ss_pred EeCCEEeeecccccCCC--------------------------------------------HHHHH--------------
Confidence 999999876552 2110 00000
Q ss_pred hccCCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhh
Q 000555 480 SLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNL 559 (1427)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~ 559 (1427)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHH
Q 000555 560 YLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRF 639 (1427)
Q Consensus 560 ~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F 639 (1427)
. .|+|=
T Consensus 240 ----------~---------------------------------------------------------~MvGr------- 245 (500)
T COG1129 240 ----------R---------------------------------------------------------LMVGR------- 245 (500)
T ss_pred ----------H---------------------------------------------------------HhhCc-------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhh
Q 000555 640 FRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEF 719 (1427)
Q Consensus 640 ~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef 719 (1427)
++
T Consensus 246 ------------------------------------------------------------------------------~~ 247 (500)
T COG1129 246 ------------------------------------------------------------------------------EL 247 (500)
T ss_pred ------------------------------------------------------------------------------ch
Confidence 00
Q ss_pred ccCcccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhh
Q 000555 720 AAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAK 799 (1427)
Q Consensus 720 ~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1427)
. ..|
T Consensus 248 ~-~~~--------------------------------------------------------------------------- 251 (500)
T COG1129 248 E-DLF--------------------------------------------------------------------------- 251 (500)
T ss_pred h-hhc---------------------------------------------------------------------------
Confidence 0 000
Q ss_pred hhhccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChh
Q 000555 800 QQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKT 879 (1427)
Q Consensus 800 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKS 879 (1427)
+.. +.. ...+..++++|++. ...++|+||++++||++||-|-=|||+|
T Consensus 252 ----------~~~-~~~----~~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GEIlGiaGLvGaGRT 299 (500)
T COG1129 252 ----------PEP-PEE----GIGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGEILGIAGLVGAGRT 299 (500)
T ss_pred ----------ccc-ccc----CCCCcEEEEecCCC-----------------CCceeCceeEEeCCcEEEEeccccCCHH
Confidence 000 000 00112356676642 1146799999999999999999999999
Q ss_pred HHHhhhcCCCCCceeEEEEEECCccCCcc----cccceEEEEccC---CCCCCCCCHHHHHHHHHhccCCc--CCCHHHH
Q 000555 880 TLMDVLAGRKTGGYIEGDIKISGYPKEQS----TFARISGYVEQN---DIHSPQVTVEESLWFSANLRLSK--EVSKNQR 950 (1427)
Q Consensus 880 TLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~---~~~~~~lTv~e~l~~~~~l~~~~--~~~~~~~ 950 (1427)
-|+++|.|... ...|+|.+||.+.... ..+.-++|||.| +-+++.++|++|+.++..-+... -.+....
T Consensus 300 El~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e 377 (500)
T COG1129 300 ELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKE 377 (500)
T ss_pred HHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHH
Confidence 99999999543 3479999999976532 345568999987 45789999999998883222221 2455566
Q ss_pred HHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 000555 951 HEFVEEVMRLVELDSL-RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029 (1427)
Q Consensus 951 ~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~ 1029 (1427)
.+.+++..+.+++... .+..+ ..||||.+|||.|||.|..+|+||+|||||.|+|..+..+|.++|++++++|.
T Consensus 378 ~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ 452 (500)
T COG1129 378 RALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK 452 (500)
T ss_pred HHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCC
Confidence 6778899999988633 23444 58999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 1030 TVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 1030 tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
+||+++-+.. |+...||||+||.+| +++-
T Consensus 453 ail~iSSElp-Ell~~~DRIlVm~~G-ri~~ 481 (500)
T COG1129 453 AILMISSELP-ELLGLSDRILVMREG-RIVG 481 (500)
T ss_pred EEEEEeCChH-HHHhhCCEEEEEECC-EEEE
Confidence 9999999985 799999999999975 5544
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-52 Score=525.99 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=156.5
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ +++.+|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 489999988662 12358999999999999999999999999999999999765 35799988652
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000555 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-LRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqr 984 (1427)
..+||++|+. .+.+++.++..+......+ ... .+.++++++.+++.+ ..+..+ ..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHH
Confidence 3589999975 3455666664322111111 111 245778999999974 455554 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEE-EccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI-YGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~-~~g~ 1063 (1427)
|||+||++|+.+|++|+|||||+|||+.+...+.+.|++. +.|||+++|++. .+...+|++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888764 349999999976 46778999999986 4655 7775
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 3
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-51 Score=495.28 Aligned_cols=220 Identities=24% Similarity=0.301 Sum_probs=166.6
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCH
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1427)
.+++|+|+|+.+.+|+.++|+|+||||||||||+|+|.+.|+ +|+|...+. -+++|++|++...+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCccH
Confidence 467999999999999999999999999999999999999886 999987652 268999999989989999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCCh---hHHHHHh-hhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP---EIDAFMK-ASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~-~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
.+.+.-+..-. .+..++..... ...+++ ..+++.. .....++..+.+++.++..||++.. +
T Consensus 84 ~~~v~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~----- 148 (530)
T COG0488 84 LDYVIEGFGEL------RELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D----- 148 (530)
T ss_pred HHHHHhhhHHH------HHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c-----
Confidence 99998754211 11111111111 001111 1111111 1123445666788899999999754 3
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
+.+.+||||||.||+||++|+.+|++|||||||++||..+...+.+.|+++ .| |+|+ ++|++.-+-+.|++|+-+
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tvii-VSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIV-VSHDRYFLDNVATHILEL 223 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEE-EeCCHHHHHHHhhheEEe
Confidence 445569999999999999999999999999999999999977777777653 24 7777 478888888999999999
Q ss_pred eCCeE-EEecChHHHH
Q 000555 402 SEGHL-VYQGPRAEVL 416 (1427)
Q Consensus 402 ~~G~i-v~~G~~~~~~ 416 (1427)
+.|++ .|.|.++...
T Consensus 224 d~g~l~~y~Gny~~~~ 239 (530)
T COG0488 224 DRGKLTPYKGNYSSYL 239 (530)
T ss_pred cCCceeEecCCHHHHH
Confidence 99987 5778776554
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=453.53 Aligned_cols=455 Identities=21% Similarity=0.303 Sum_probs=352.4
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc----cceEEEEccCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV----QRTSAYISQTDNHIP 241 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~ 241 (1427)
...+++|||+++++||+.||+|.||||||||+++|.|.++|+ +|+|.++|+++.-..+ +.-||.|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 567999999999999999999999999999999999999987 9999999998865443 356999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
++||.|||..+..-... .. ..+ .....+++++.+..||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~---~~-----~~~------------------------~~~~~~i~~l~~~yGl~vdp~~~V~d 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG---GL-----IDR------------------------RQARARIKELSERYGLPVDPDAKVAD 140 (501)
T ss_pred ccchhhhhhhcCccccc---cc-----cCH------------------------HHHHHHHHHHHHHhCCCCCccceeec
Confidence 99999999987532100 00 000 01123477889999998777777665
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
||=||||||.|-++|+.+|++|+|||||+-|-|....++++.|+++++ .|+|||+. +|-..|+.+.||++.||
T Consensus 141 -----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~I-THKL~Ev~~iaDrvTVL 213 (501)
T COG3845 141 -----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFI-THKLKEVMAIADRVTVL 213 (501)
T ss_pred -----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eccHHHHHHhhCeeEEE
Confidence 999999999999999999999999999999999999999999999875 59999994 67789999999999999
Q ss_pred eCCeEEEecCh-HHHHHHHHhcCCCCCCCCChHHHHHHhcCccchhccccCCCCCCcCCCHHHHHHHHHhChhhHhHhhh
Q 000555 402 SEGHLVYQGPR-AEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSS 480 (1427)
Q Consensus 402 ~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 480 (1427)
.+|+++-.-++ .+ .+.+++++
T Consensus 214 R~Gkvvgt~~~~~~--------------------------------------------~t~~ela~-------------- 235 (501)
T COG3845 214 RRGKVVGTVDPVAE--------------------------------------------TTEEELAE-------------- 235 (501)
T ss_pred eCCeEEeeecCCCC--------------------------------------------CCHHHHHH--------------
Confidence 99998643211 00 00000000
Q ss_pred ccCCCCCCCCCCCcccCCCcccCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhhH
Q 000555 481 LSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLY 560 (1427)
Q Consensus 481 l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~ 560 (1427)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCchhHHH
Q 000555 561 LSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFF 640 (1427)
Q Consensus 561 ~g~lff~~~~~~~~~~~~~~~~~~~~~vf~rqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~ivY~~~gl~~~~~~F~ 640 (1427)
+| +
T Consensus 236 ----------lM---------------------------------------------------------v---------- 238 (501)
T COG3845 236 ----------LM---------------------------------------------------------V---------- 238 (501)
T ss_pred ----------Hh---------------------------------------------------------c----------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHcHHHHHHHHHHHHhhc
Q 000555 641 RHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFA 720 (1427)
Q Consensus 641 ~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 720 (1427)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T COG3845 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccccccccccccceecccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcCcCCCccccccchhhhhHHhhhh
Q 000555 721 AARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQ 800 (1427)
Q Consensus 721 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1427)
|.++. . ..
T Consensus 239 ---------------G~~v~-----------------------------------------------~--------~~-- 246 (501)
T COG3845 239 ---------------GREVV-----------------------------------------------L--------RV-- 246 (501)
T ss_pred ---------------CCccc-----------------------------------------------c--------cc--
Confidence 00000 0 00
Q ss_pred hhccccCCCCCCCCccCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhH
Q 000555 801 QFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTT 880 (1427)
Q Consensus 801 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKST 880 (1427)
. . +. ...| +..++++|++...+ .....+++|||++++||++||.|-.|-|-+.
T Consensus 247 ----~--~-~~--~~pg------~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~e 299 (501)
T COG3845 247 ----V--K-PP--STPG------EVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSE 299 (501)
T ss_pred ----c--c-CC--CCCC------CeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHH
Confidence 0 0 00 0001 12478888875322 1245789999999999999999999999999
Q ss_pred HHhhhcCCCCCceeEEEEEECCccC-C---ccc-ccceEEEEccCC---CCCCCCCHHHHHHHHHhccCC----cCCCHH
Q 000555 881 LMDVLAGRKTGGYIEGDIKISGYPK-E---QST-FARISGYVEQND---IHSPQVTVEESLWFSANLRLS----KEVSKN 948 (1427)
Q Consensus 881 Ll~~L~g~~~~~~~~G~i~i~g~~~-~---~~~-~~~~~gyv~Q~~---~~~~~lTv~e~l~~~~~l~~~----~~~~~~ 948 (1427)
|+.+|+|..+. .+|+|.++|.+. . ... .+.-+||||.|. -+.+.+|+.||+.+...-+.| .-.+..
T Consensus 300 L~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~ 377 (501)
T COG3845 300 LVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRR 377 (501)
T ss_pred HHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHH
Confidence 99999997643 349999999986 2 222 234589999986 356899999999877543211 124556
Q ss_pred HHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000555 949 QRHEFVEEVMRLVELDSLR-DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027 (1427)
Q Consensus 949 ~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~ 1027 (1427)
...+...++++.++..... +.. .+.||||++||+-+||+|.++|++|+..+||.|||..+.+.|.+.|.+.++.
T Consensus 378 ~i~~~a~~li~~fdVr~~~~~~~-----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~ 452 (501)
T COG3845 378 AIRKFARELIEEFDVRAPSPDAP-----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA 452 (501)
T ss_pred HHHHHHHHHHHHcCccCCCCCcc-----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc
Confidence 6778889999999887322 222 3689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCC
Q 000555 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 1028 g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~ 1065 (1427)
|+.|++++-+.+ ++++.+|+|.||.+ |+++...+..
T Consensus 453 G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 453 GKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred CCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 999999999987 79999999999986 6777666654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=373.23 Aligned_cols=214 Identities=27% Similarity=0.390 Sum_probs=188.1
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
|+++|++.++ ++..+|+|||++|++||+++|+|||||||||||++|.+... +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6788887655 35789999999999999999999999999999999999765 35799999997542
Q ss_pred ----cccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 907 ----QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 907 ----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
....|+.+|+|+|+..+||++||.||+.++...- ...++++.++...+.|+.+||.+.+|... ..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2356888999999999999999999999874322 34567777888999999999999999875 589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|||||+|||||+.+|+++++|||||+|||+...++.+.+++++++|.|.||+||+... ..+.+|||+.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999874 6778999999986 6777776
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 64
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=366.71 Aligned_cols=220 Identities=24% Similarity=0.410 Sum_probs=186.7
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCc----ccccceEEEEccCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE----FHVQRTSAYISQTDNHIP 241 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----~~~~~~~~yv~Q~~~~~~ 241 (1427)
+..+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|+++.. ...|+.+|+|+|+..+||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 467999999999999999999999999999999999999886 9999999976632 246789999999999999
Q ss_pred CCCHHHHHHHHHHh-cCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 242 ELTVRETFDFAARW-QGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
.+||.||+..+... ++. ++ .+.+.+..+.|+.+||.+.+|
T Consensus 91 HlTvleNv~lap~~v~~~-----------~k------------------------~eA~~~A~~lL~~VGL~~ka~---- 131 (240)
T COG1126 91 HLTVLENVTLAPVKVKKL-----------SK------------------------AEAREKALELLEKVGLADKAD---- 131 (240)
T ss_pred cchHHHHHHhhhHHHcCC-----------CH------------------------HHHHHHHHHHHHHcCchhhhh----
Confidence 99999999997532 221 11 111234567899999987665
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
.++..|||||||||+|||||+.+|+++|+|||||+|||+...++.+.+++++++ |.|.++++ |...-.-+.+|||+.
T Consensus 132 -~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVT-HEM~FAr~VadrviF 208 (240)
T COG1126 132 -AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVT-HEMGFAREVADRVIF 208 (240)
T ss_pred -hCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEe-chhHHHHHhhheEEE
Confidence 456779999999999999999999999999999999999999999999999875 89999865 556778889999999
Q ss_pred EeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHH
Q 000555 401 LSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQE 438 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 438 (1427)
|++|+++.+|+++++. ..|.+....+|+..
T Consensus 209 md~G~iie~g~p~~~f--------~~p~~~R~~~FL~~ 238 (240)
T COG1126 209 MDQGKIIEEGPPEEFF--------DNPKSERTRQFLSK 238 (240)
T ss_pred eeCCEEEEecCHHHHh--------cCCCCHHHHHHHHh
Confidence 9999999999999873 45666666777754
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=392.46 Aligned_cols=200 Identities=20% Similarity=0.250 Sum_probs=153.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.+.+.|+++.++. +..++++++|-+.+++.+|+|||||+|||||||++.|...+ ..|.|.-.-+
T Consensus 389 vi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H-- 452 (614)
T KOG0927|consen 389 VIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH-- 452 (614)
T ss_pred eEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc--
Confidence 5789999875532 22689999999999999999999999999999999997653 4566543222
Q ss_pred CcccccceEEEEccC--CCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHH
Q 000555 906 EQSTFARISGYVEQN--DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR-DALVGFPGSSGLSTE 982 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~--~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgG 982 (1427)
..+++..|+ +.+--..++-|++.=. .+++.+.+.+..++..+||+... +..+ +.||+|
T Consensus 453 ------~~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~G 513 (614)
T KOG0927|consen 453 ------NKLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVPM-----SQLSDG 513 (614)
T ss_pred ------ccchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccch-----hhcccc
Confidence 123333443 2222345555654311 12234556788999999998444 4444 589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||+||.+|+.++..|.||+|||||+|||..+...+-+.|.+. ..+||+++|+... +-+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999988765 4689999999764 677789999999999999998
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 64
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=371.04 Aligned_cols=219 Identities=25% Similarity=0.349 Sum_probs=191.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
|+++||+..+... ..+...+|+|||++|++||+.||+|+||||||||++++.+... +.+|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5788887544321 1234579999999999999999999999999999999999765 35899999997654
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 Q------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
. ...|+.+|+++|+..++...||+||+.|...+. ..++++++++|.++++.+||.+.++... .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 3 346788999999999999999999999987765 3678899999999999999999888874 5899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1059 (1427)
|||||||+|||||+.+|+||++|||||+|||.|...|.+.|+++-+ .|.||++++|++. -+-+.||||.||++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 9999999999999999999999999999999999999999999865 4999999999976 36778999999985 7999
Q ss_pred EccCCC
Q 000555 1060 YGGKLG 1065 (1427)
Q Consensus 1060 ~~g~~~ 1065 (1427)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999863
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=370.70 Aligned_cols=223 Identities=26% Similarity=0.364 Sum_probs=192.2
Q ss_pred ccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc------cccceEEEEccCCC
Q 000555 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF------HVQRTSAYISQTDN 238 (1427)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~~~~~~~yv~Q~~~ 238 (1427)
...++|+|||++|++|++++|+|+||||||||++++.++..|+ +|+|.++|.++... ..|+.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3568999999999999999999999999999999999999987 99999999887654 24688999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
++...||.||++|..+..+.+ + .+.+.++.++|+.+||++.++
T Consensus 94 LLssrTV~~NvA~PLeiag~~-----------k------------------------~ei~~RV~elLelVgL~dk~~-- 136 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP-----------K------------------------AEIKQRVAELLELVGLSDKAD-- 136 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC-----------H------------------------HHHHHHHHHHHHHcCChhhhc--
Confidence 999999999999998876531 1 112346888999999986554
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
+++.+|||||||||+|||||+.+|+|||.|||||+|||.|+..|+++|+++-++.|.||++.+|+ ++-+-+.||||
T Consensus 137 ---~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rV 212 (339)
T COG1135 137 ---RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE-MEVVKRICDRV 212 (339)
T ss_pred ---cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999997555 66778899999
Q ss_pred EEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHh
Q 000555 399 LLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEV 439 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 439 (1427)
.+|++|+++++|+..++. ..|.+.-..+|+.+.
T Consensus 213 avm~~G~lvE~G~v~~vF--------~~Pk~~~t~~fi~~~ 245 (339)
T COG1135 213 AVLDQGRLVEEGTVSEVF--------ANPKHAITQEFIGET 245 (339)
T ss_pred eEeeCCEEEEeccHHHhh--------cCcchHHHHHHHHhh
Confidence 999999999999999884 345554445555543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=359.43 Aligned_cols=210 Identities=25% Similarity=0.420 Sum_probs=190.0
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~ 242 (1427)
.+.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||+++.+. .+||.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 567999999999999999999999999999999999999986 99999999998764 468999999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||.|||.+-.++++..+ ++.+.+++++|+.+||+. ....++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k-----------------------------------~~i~~r~~ELl~lvgL~p---~~~~~R 131 (309)
T COG1125 90 LTVAENIATVPKLLGWDK-----------------------------------ERIKKRADELLDLVGLDP---SEYADR 131 (309)
T ss_pred ccHHHHHHhhhhhcCCCH-----------------------------------HHHHHHHHHHHHHhCCCH---HHHhhc
Confidence 999999999877765421 112345889999999974 236788
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
++.+|||||+|||.+||||+.+|+|+|||||+++|||-++.++.+.++++.++.++|+|++ +|+.+|.+.++|||++|+
T Consensus 132 yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV-THDidEA~kLadri~vm~ 210 (309)
T COG1125 132 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV-THDIDEALKLADRIAVMD 210 (309)
T ss_pred CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE-ecCHHHHHhhhceEEEec
Confidence 8999999999999999999999999999999999999999999999999999999999996 678899999999999999
Q ss_pred CCeEEEecChHHHHH
Q 000555 403 EGHLVYQGPRAEVLE 417 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~ 417 (1427)
+|+++..+++++++.
T Consensus 211 ~G~i~Q~~~P~~il~ 225 (309)
T COG1125 211 AGEIVQYDTPDEILA 225 (309)
T ss_pred CCeEEEeCCHHHHHh
Confidence 999999999999974
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=386.64 Aligned_cols=224 Identities=30% Similarity=0.466 Sum_probs=193.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.+.++|++..+. .++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 356778876542 146799999999999999999999999999999999998763 689999999876
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000555 906 EQ--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 983 (1427)
.. ...++.+||++|++.++|.+||+|+|.|.+.++.... +...++++++++.++|.+.++..+ ++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHH
Confidence 54 4567889999999999999999999999999885432 445678999999999998666665 5899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++++| +||+++||+++ ++...||+|++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999986 68888999999986 6888888
Q ss_pred CCCCCchhHHHHHHh
Q 000555 1063 KLGVHSKTMIDYFQA 1077 (1427)
Q Consensus 1063 ~~~~~~~~~~~yf~~ 1077 (1427)
+. .++...+..
T Consensus 220 ~~----~~l~~~~~~ 230 (293)
T COG1131 220 TP----EELKEKFGG 230 (293)
T ss_pred CH----HHHHHhhcc
Confidence 65 345555443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=365.84 Aligned_cols=216 Identities=27% Similarity=0.443 Sum_probs=184.9
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++++++. + ++|+|||+++++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 5899999988741 2 59999999999999999999999999999999999765 3589999999986
Q ss_pred CcccccceEEEEccCC---CCCCCCCHHHHHHHHHhccC--CcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 906 EQSTFARISGYVEQND---IHSPQVTVEESLWFSANLRL--SKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~---~~~~~lTv~e~l~~~~~l~~--~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
....-+.++|||||.. .-+| +||+|-+..+..-+. -...+.+ .++.++++|+.+|+.+.+|..+| .||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~-d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKK-DKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHH-HHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 6544356899999954 3344 899999987743322 1223333 36789999999999999999986 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||+||+.|||||+++|++|+|||||+|+|+.++..++++|+++.++|+||++++||++ .+.+.||+|+.|+ +++++
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~ 218 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIA 218 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEe
Confidence 99999999999999999999999999999999999999999999988999999999997 5889999999996 47888
Q ss_pred ccCCCC
Q 000555 1061 GGKLGV 1066 (1427)
Q Consensus 1061 ~g~~~~ 1066 (1427)
.|+..+
T Consensus 219 ~G~~~~ 224 (254)
T COG1121 219 SGPPEE 224 (254)
T ss_pred ccChhh
Confidence 888753
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=358.28 Aligned_cols=213 Identities=26% Similarity=0.384 Sum_probs=188.7
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++|+||+..+ .++.+++|+|++|++||+++++|||||||||+|++|.+..+ +.+|+|.|||.++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 5789987544 25679999999999999999999999999999999999876 35899999999875
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCH
Q 000555 907 Q---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS--LRDALVGFPGSSGLST 981 (1427)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSg 981 (1427)
. ..+||.+|||-|.-.+||++||.||+.+-..+. ..++++.+++++|+++.+||++ ++++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 467899999999999999999999999876664 5678888999999999999975 56665 368999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
||+|||.+||||+++|+||+||||+++|||.++..+++.++++.++ |+|||++|||.. +.+.+.|||.+|++ |+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999998764 999999999986 78899999999986 56666
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.+++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 5554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=356.19 Aligned_cols=230 Identities=26% Similarity=0.371 Sum_probs=197.5
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.|++++|+.+. +.+.|++||+++|++||+++||||||+||||||++|.|...+ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 57899987654 467899999999999999999999999999999999998763 589999999986
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 000555 906 EQ------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL-RDALVGFPGSSG 978 (1427)
Q Consensus 906 ~~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 978 (1427)
.+ ...++++|+++|+-.+|..+||+||+.|... -....+++..++.+..-++.+||... .+.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 2457789999999999999999999998643 23456778888888899999999877 5544 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 979 LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
||||+|||++|||||+.+|+|||+||||+||||.++..+-++|+++.++ |.|++++|||.+ +++..+|++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999875 999999999987 68999999999986 78
Q ss_pred EEEccCCCCCc----hhHHHHHHhcC
Q 000555 1058 VIYGGKLGVHS----KTMIDYFQALD 1079 (1427)
Q Consensus 1058 ~~~~g~~~~~~----~~~~~yf~~~~ 1079 (1427)
+++.|+..+.. --+.+||....
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 99999875311 12667887653
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=407.77 Aligned_cols=216 Identities=23% Similarity=0.345 Sum_probs=186.1
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++++|+++.++ .+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 4689999987653 123569999999999999999999999999999999999865 358999999988
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 905 KEQ--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 905 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. .+.++.++.++++++.++|.+..|..+ ++||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2346779999999999999999999999876642 233444567899999999998888876 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|+++. +|+|||++||+++ ++...+|++++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999985 5999999999975 56678999999986 6788888
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 64
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=359.83 Aligned_cols=204 Identities=26% Similarity=0.394 Sum_probs=180.5
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.+.++++++++. ...+|+|||++|.+||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 467888877653 36799999999999999999999999999999999998763 589999999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
. .-...+|||+|++.++|.+||+||+.++...+. .+.+++.+++++.++.+||.+..|... ..|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHH
Confidence 3 234568999999999999999999999987653 456667778999999999999998875 689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
||+|||||+.+|+||+||||+++||+.|+..+++.+.++.+ .++|||++||+.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999865 5899999999986 677789999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=368.07 Aligned_cols=228 Identities=27% Similarity=0.402 Sum_probs=190.9
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++.+|+++.++ ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 368899988773 5679999999999999999999999999999999999766 3579999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCc-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSK-EVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.+|||||.....+.+||+|.+.++..-.... ....++..+.++++++.+++.+.+++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 457889999999998888999999999875432211 1112333447999999999999999987 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||+.|||||+++|+||+||||||+||...+.++++.++++.+ +|+|||+++||++. ...+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999984 59999999999984 7788999999986 57777
Q ss_pred ccCCCC--CchhHHHHH
Q 000555 1061 GGKLGV--HSKTMIDYF 1075 (1427)
Q Consensus 1061 ~g~~~~--~~~~~~~yf 1075 (1427)
.|++.+ ..+.+.+.|
T Consensus 220 ~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 220 QGTPEEVLTEENLREVY 236 (258)
T ss_pred ecCcchhcCHHHHHHHh
Confidence 776542 223344454
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=363.14 Aligned_cols=210 Identities=26% Similarity=0.453 Sum_probs=184.2
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCe---ecCccc-ccceEEEEccCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY---KLDEFH-VQRTSAYISQTDNHIP 241 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~~-~~~~~~yv~Q~~~~~~ 241 (1427)
...+++|||+.|+.||+++++|||||||||||++|||+..|+ +|.|.+||+ +.+... ..|.||||+|+..+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 457899999999999999999999999999999999999987 999999999 554432 3588999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
.|||.+||.|+.+++... |+ ....+.+++++|+.+.|++ .++
T Consensus 91 HmtVa~NIAFGl~~~~~~--------------------p~-------------~~~~r~rv~elL~lvqL~~-----la~ 132 (345)
T COG1118 91 HMTVADNIAFGLKVRKER--------------------PS-------------EAEIRARVEELLRLVQLEG-----LAD 132 (345)
T ss_pred cchHHhhhhhcccccccC--------------------CC-------------hhhHHHHHHHHHHHhcccc-----hhh
Confidence 999999999998775221 00 0112345788999999975 667
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
+++..|||||||||++||||+..|++||||||+++||...+..+-++|+++.++.|.|+|++ +|+..|++++||+|++|
T Consensus 133 ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfV-THD~eea~~ladrvvvl 211 (345)
T COG1118 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFV-THDQEEALELADRVVVL 211 (345)
T ss_pred cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEE-eCCHHHHHhhcceEEEe
Confidence 88889999999999999999999999999999999999999999999999988878888885 57789999999999999
Q ss_pred eCCeEEEecChHHHHH
Q 000555 402 SEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~~ 417 (1427)
++|+|...||++|+.+
T Consensus 212 ~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 212 NQGRIEQVGPPDEVYD 227 (345)
T ss_pred cCCeeeeeCCHHHHhc
Confidence 9999999999999854
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=350.98 Aligned_cols=220 Identities=25% Similarity=0.341 Sum_probs=187.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++||+-.++ +++++|+|||++|++||++||+|||||||||||++|.|... +.+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478999876553 35789999999999999999999999999999999999765 3579999999764
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCC-----cCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000555 906 EQ------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLS-----KEVSKNQRHEFVEEVMRLVELDSLRDALVGFP 974 (1427)
Q Consensus 906 ~~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 974 (1427)
.. ..+++.+||++|++.+.|.+||.+|+..+..-+.+ -....++.+..+-+.|+.+|+.+.+.+..+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 34678899999999999999999999877432222 122333444567788999999998887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
.|||||+|||+|||||+++|+|+|-|||+++|||.+++.||+.|+++.+ +|.|||++.||.+. ..++|||++-|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 7999999999999999999999999999999999999999999999975 59999999999864 678899999998
Q ss_pred cCcEEEEccCCCC
Q 000555 1054 RGGRVIYGGKLGV 1066 (1427)
Q Consensus 1054 ~gg~~~~~g~~~~ 1066 (1427)
+ |+++|+||..+
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 6 79999999854
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=354.56 Aligned_cols=209 Identities=29% Similarity=0.447 Sum_probs=175.1
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++||+-.+... .....+|++||++|++||+++|||||||||||||++|.|...+ .+|.|.++|.+..
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 3567776444321 1236799999999999999999999999999999999998764 5799999997654
Q ss_pred c------ccc-cceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCC
Q 000555 907 Q------STF-ARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD-ALVGFPGSSG 978 (1427)
Q Consensus 907 ~------~~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~ 978 (1427)
. ..+ ++.+|||+|+..+.|.+||+||+.+...+.. .+..++.+.++++++.+||.+..+ ... ..
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKP-----SE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCc-----hh
Confidence 2 123 4579999999999999999999998765542 222256677899999999986665 544 58
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 979 LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
|||||||||+|||||+.+|+||+.||||.+||+.++..|++.++++.++ |+|||++||+| ++...+||++.|.+|+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 9999999999999999999999999999999999999999999999765 99999999996 5788999999999864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=379.72 Aligned_cols=211 Identities=34% Similarity=0.526 Sum_probs=185.3
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCc--ccccceEEEEccCCCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE--FHVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~~~~~~~~yv~Q~~~~~~~l 243 (1427)
.+.+|+|||+++++|++++|+||||||||||||+|+|++.|+ +|+|.++|++... ...++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 468999999999999999999999999999999999999986 9999999998765 34578899999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||+|||.|.+++++... .....+++++++.+||++.. ++.
T Consensus 94 T~~e~l~~~~~l~~~~~-----------------------------------~~~~~~~~~~l~~~~L~~~~-----~~~ 133 (293)
T COG1131 94 TVRENLEFFARLYGLSK-----------------------------------EEAEERIEELLELFGLEDKA-----NKK 133 (293)
T ss_pred cHHHHHHHHHHHhCCCh-----------------------------------hHHHHHHHHHHHHcCCchhh-----Ccc
Confidence 99999999998876421 00123478899999998632 455
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
+++||+||||||+||.||+++|+++||||||+|||+.++.++.+.|++++++.++||+++. |...++.++||+|++|++
T Consensus 134 ~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvliss-H~l~e~~~~~d~v~il~~ 212 (293)
T COG1131 134 VRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLST-HILEEAEELCDRVIILND 212 (293)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeC-CcHHHHHHhCCEEEEEeC
Confidence 6789999999999999999999999999999999999999999999999887558999975 556788999999999999
Q ss_pred CeEEEecChHHHHHHHH
Q 000555 404 GHLVYQGPRAEVLEFFE 420 (1427)
Q Consensus 404 G~iv~~G~~~~~~~~f~ 420 (1427)
|++++.|+.+++...+.
T Consensus 213 G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 213 GKIIAEGTPEELKEKFG 229 (293)
T ss_pred CEEEEeCCHHHHHHhhc
Confidence 99999999999776543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=348.13 Aligned_cols=211 Identities=26% Similarity=0.369 Sum_probs=183.2
Q ss_pred ccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc------cccceEEEEccCCC
Q 000555 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF------HVQRTSAYISQTDN 238 (1427)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~~~~~~~yv~Q~~~ 238 (1427)
..+.||+|||++|++||+++|+||||||||||||.|.|+++|+ +|+|.++|+++... ..++++|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 3568999999999999999999999999999999999999986 99999999987543 35688999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
+|..+||+||+.|..+-... .|...++ ..+..-|+.+||.. .
T Consensus 96 LFssltV~eNVafplre~~~--------------------lp~~~i~--------------~lv~~KL~~VGL~~----~ 137 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK--------------------LPESLIR--------------ELVLMKLELVGLRG----A 137 (263)
T ss_pred cccccchhHhhheehHhhcc--------------------CCHHHHH--------------HHHHHHHHhcCCCh----h
Confidence 99999999999996543211 1111111 23455688899974 3
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
+.+.++.+||||++||+++|||++.+|+++|+||||+||||.++..+.++|+++.+..+.|++++ +|+.++++..||++
T Consensus 138 ~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~V-THDl~s~~~i~Drv 216 (263)
T COG1127 138 AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMV-THDLDSLLTIADRV 216 (263)
T ss_pred hhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEE-ECChHHHHhhhceE
Confidence 46788899999999999999999999999999999999999999999999999999999999996 56678999999999
Q ss_pred EEEeCCeEEEecChHHHHH
Q 000555 399 LLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~~ 417 (1427)
++|.+|+|+.+|+++++.+
T Consensus 217 ~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 217 AVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999874
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=378.07 Aligned_cols=217 Identities=27% Similarity=0.426 Sum_probs=192.2
Q ss_pred eeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc-cceEEEEccCCCCCCCCCHHH
Q 000555 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-QRTSAYISQTDNHIPELTVRE 247 (1427)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E 247 (1427)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..+ +|.+|+|+|+..++|.|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 999999999999999999999999999999999999986 9999999999998765 588999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCC
Q 000555 248 TFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV 327 (1427)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 327 (1427)
|+.|+.+.++..+ .+.+.+++++.+.|+|++.. ++.+++|
T Consensus 95 Niaf~Lk~~~~~k-----------------------------------~ei~~rV~eva~~L~l~~lL-----~r~P~~L 134 (338)
T COG3839 95 NIAFGLKLRGVPK-----------------------------------AEIDKRVKEVAKLLGLEHLL-----NRKPLQL 134 (338)
T ss_pred HhhhhhhhCCCch-----------------------------------HHHHHHHHHHHHHcCChhHH-----hcCcccC
Confidence 9999998876411 11234688999999998744 5567789
Q ss_pred ChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEE
Q 000555 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLV 407 (1427)
Q Consensus 328 SGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv 407 (1427)
||||||||++||||+.+|+++|||||+|.||+..+.++...|+++.++.+.|+|.+ +|+..|...++|+|.+|++|+|.
T Consensus 135 SGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYV-THDq~EAmtladri~Vm~~G~i~ 213 (338)
T COG3839 135 SGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYV-THDQVEAMTLADRIVVMNDGRIQ 213 (338)
T ss_pred ChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEE-cCCHHHHHhhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999999999999988888898886 56678999999999999999999
Q ss_pred EecChHHHHHHHHhcCCCCCCCCChHHHHH
Q 000555 408 YQGPRAEVLEFFESLGFQLPPRKGVADFLQ 437 (1427)
Q Consensus 408 ~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ 437 (1427)
..|++.++.+ .|...-+|.|+-
T Consensus 214 Q~g~p~ely~--------~P~n~fVA~FiG 235 (338)
T COG3839 214 QVGTPLELYE--------RPANLFVAGFIG 235 (338)
T ss_pred ecCChHHHhh--------CccchhhhhhcC
Confidence 9999999853 466666666654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.72 Aligned_cols=211 Identities=29% Similarity=0.439 Sum_probs=180.6
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~ 242 (1427)
.++||+|+|+++++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.+. ...|.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 457999999999999999999999999999999999999986 99999999988664 356899999999888889
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+|.+.++..-.. + +.... .+++...++++|+.+|+.+.++..
T Consensus 91 ~tV~d~V~~GR~p~~---~---~~~~~-------------------------~~~D~~~v~~aL~~~~~~~la~r~---- 135 (258)
T COG1120 91 LTVYELVLLGRYPHL---G---LFGRP-------------------------SKEDEEIVEEALELLGLEHLADRP---- 135 (258)
T ss_pred cEEeehHhhcCCccc---c---cccCC-------------------------CHhHHHHHHHHHHHhCcHHHhcCc----
Confidence 999999998732110 0 00000 111223578899999998766544
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
+..|||||||||.|||||+++|+||+||||||+||...+.++++.++++.++.|+|+|+++ |+.+....+||++++|+
T Consensus 136 -~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vl-HDlN~A~ryad~~i~lk 213 (258)
T COG1120 136 -VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL-HDLNLAARYADHLILLK 213 (258)
T ss_pred -ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEE
Confidence 5569999999999999999999999999999999999999999999999988899999975 56678999999999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|+++.+|++++++
T Consensus 214 ~G~i~a~G~p~evl 227 (258)
T COG1120 214 DGKIVAQGTPEEVL 227 (258)
T ss_pred CCeEEeecCcchhc
Confidence 99999999998886
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=381.25 Aligned_cols=223 Identities=27% Similarity=0.424 Sum_probs=196.6
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc-cceEEEEccCCCCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-QRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lT 244 (1427)
...+|+|+|+.|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+-.+||.||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 467999999999999999999999999999999999999987 9999999999987654 688999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.|+.+.++.. +.++ .+.++++.|+.++|++ .+++.+
T Consensus 94 V~~NVafGLk~~~~~--------------------~~~~--------------i~~rv~e~L~lV~L~~-----~~~R~p 134 (352)
T COG3842 94 VEENVAFGLKVRKKL--------------------KKAE--------------IKARVEEALELVGLEG-----FADRKP 134 (352)
T ss_pred HHHHhhhhhhhcCCC--------------------CHHH--------------HHHHHHHHHHHcCchh-----hhhhCh
Confidence 999999998744321 0011 1235888999999986 556777
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..|||||||||++||||+.+|++||||||.|+||..-+.++..-|+++.++.|.|.|+. +|+..|.+.++|||++|++|
T Consensus 135 ~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~V-THDqeEAl~msDrI~Vm~~G 213 (352)
T COG3842 135 HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-THDQEEALAMSDRIAVMNDG 213 (352)
T ss_pred hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEE-ECCHHHHhhhccceEEccCC
Confidence 88999999999999999999999999999999999999999999999999999999996 56678999999999999999
Q ss_pred eEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHh
Q 000555 405 HLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEV 439 (1427)
Q Consensus 405 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 439 (1427)
+|...|+++++. ..|...-+|+|+-+.
T Consensus 214 ~I~Q~gtP~eiY--------~~P~~~fVA~FiG~~ 240 (352)
T COG3842 214 RIEQVGTPEEIY--------ERPATRFVADFIGES 240 (352)
T ss_pred ceeecCCHHHHh--------hCcchHHHHHHhCcc
Confidence 999999999984 467777788887653
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=355.26 Aligned_cols=192 Identities=26% Similarity=0.375 Sum_probs=170.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVR 246 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1427)
..+|+|+|++|.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++ ..+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEeccCcccchhhHH
Confidence 67999999999999999999999999999999999999986 99999999887 34567899999999999999999
Q ss_pred HHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCC
Q 000555 247 ETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG 326 (1427)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 326 (1427)
||+.|+.+.++... . +...++++.|+.+||... +++.+.+
T Consensus 91 ~NV~l~l~~~~~~~-----------~------------------------e~~~~a~~~L~~VgL~~~-----~~~~P~q 130 (248)
T COG1116 91 DNVALGLELRGKSK-----------A------------------------EARERAKELLELVGLAGF-----EDKYPHQ 130 (248)
T ss_pred hhheehhhccccch-----------H------------------------hHHHHHHHHHHHcCCcch-----hhcCccc
Confidence 99999987764210 0 011247789999999764 4667788
Q ss_pred CChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 327 LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
|||||||||+|||||+.+|+||+||||+++||+.|+.++.+.|.++.++.++||+++ +|..+|...++|||++|+++
T Consensus 131 LSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllV-THdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLV-THDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEE-eCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999999999999999988889999996 56778999999999999984
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=345.57 Aligned_cols=216 Identities=25% Similarity=0.397 Sum_probs=180.8
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc------cccceEEEEccCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF------HVQRTSAYISQTDNH 239 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~~~~~~~yv~Q~~~~ 239 (1427)
.+++|+|||++|++||+++|+|||||||||||++|.|+.+++ +|+|.+||.++... .+++.+||++|++.+
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 457999999999999999999999999999999999999876 99999999877543 246889999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
.+.+||.+|+..+..-+.. ..+....-.++.+ +...-+.|+.+|+.+.+-+..
T Consensus 93 v~r~sv~~NVl~grl~~~s--~~~slfglfsk~d-------------------------k~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTS--TWRSLFGLFSKED-------------------------KAQALDALERVGILDKAYQRA 145 (258)
T ss_pred ccccHHHHHHHhhhcccch--HHHHHhCCCCHHH-------------------------HHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999987532211 0011111111221 123456789999987665544
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
+ .|||||+|||+|||||+.+|+|+|-|||+++||+.++.++++.|+++.++.|.|+|+++|| .+-..++||||+
T Consensus 146 ~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdlA~~Y~~Rii 219 (258)
T COG3638 146 S-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRII 219 (258)
T ss_pred c-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHHhhhe
Confidence 3 5999999999999999999999999999999999999999999999999999999998766 567789999999
Q ss_pred EEeCCeEEEecChHHHHH
Q 000555 400 LLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~~ 417 (1427)
-|++|+|+|.||++++.+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999998754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=357.74 Aligned_cols=205 Identities=32% Similarity=0.486 Sum_probs=184.8
Q ss_pred cceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCc---cCCc-ccccceEEEEccCCCCCCC
Q 000555 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKEQ-STFARISGYVEQNDIHSPQ 926 (1427)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~~~~~~~ 926 (1427)
...+++|||+.|+.||++|++|||||||||||++|+|..+ +..|.|.+||. +.+. ....|.+|||+|+..+|++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4568999999999999999999999999999999999876 35899999999 5544 3446789999999999999
Q ss_pred CCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000555 927 VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1006 (1427)
Q Consensus 927 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPT 1006 (1427)
+||.+|+.|+..++ ....++.+.+.+++++|+.+.|++..+... ..|||||||||++||||+..|++|+||||.
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998877 334567788889999999999999998875 689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCC
Q 000555 1007 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 1007 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~ 1065 (1427)
++||+.-+..+.+.|+++.+. |.|+|++|||+. ++++.+|||++|++ |+++..||..
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 999999999999999999875 999999999986 79999999999986 6888888863
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=350.74 Aligned_cols=197 Identities=29% Similarity=0.461 Sum_probs=170.2
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-------ccceEEEEccCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-------VQRTSAYISQTDN 238 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~ 238 (1427)
..++|+|+|++|++||+++|+|||||||||||++|.|+..|+ +|+|.++|.+++... .++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 368999999999999999999999999999999999999986 999999998886542 2467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
++|++||+||+.....+.+...+ ......+.+++.+||++..+
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~-----------------------------------~~~~~~~~l~~~lgl~~~~~-- 136 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG-----------------------------------RRKRAAEELLEVLGLEDRLL-- 136 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh-----------------------------------HHHHHHHHHHHhcCChhhhc--
Confidence 99999999999998766554110 01123677899999975432
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
+..+..|||||||||+|||||+.+|+++|.||||.+||+.++..|++.++++.++.|+|+|+++|. +++.+.|||+
T Consensus 137 --~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd--~~lA~~~dr~ 212 (226)
T COG1136 137 --KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD--PELAKYADRV 212 (226)
T ss_pred --cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC--HHHHHhCCEE
Confidence 245667999999999999999999999999999999999999999999999998889999998665 4788999999
Q ss_pred EEEeCCeE
Q 000555 399 LLLSEGHL 406 (1427)
Q Consensus 399 ilL~~G~i 406 (1427)
+.|.+|++
T Consensus 213 i~l~dG~~ 220 (226)
T COG1136 213 IELKDGKI 220 (226)
T ss_pred EEEeCCee
Confidence 99999994
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=336.62 Aligned_cols=201 Identities=29% Similarity=0.426 Sum_probs=184.1
Q ss_pred ceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc--ccccceEEEEccCCCCCCCCCH
Q 000555 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ--STFARISGYVEQNDIHSPQVTV 929 (1427)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 929 (1427)
.++++||||+++.||++||+|+|||||||+|++|++...+ .+|.|.+||.+... ...++.+|.++.+.-++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 4589999999999999999999999999999999998763 58999999998643 4578899999988889999999
Q ss_pred HHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000555 930 EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1427)
Q Consensus 930 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgL 1009 (1427)
+|||.|.+.+. +.+..+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999998875 46677788899999999999999999986 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|..+...+.+.++++.+.|++||+++|... ++..+||++++|.+ |++++.|..
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 999999999999999888999999999975 68889999999997 688888875
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=370.67 Aligned_cols=215 Identities=29% Similarity=0.423 Sum_probs=191.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++.++. +..+|+|||++|+.||.++|+|||||||||||++|||..+ +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 478888876552 1228999999999999999999999999999999999876 4589999999987
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 906 EQ-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
+. ...+|.+|+|+|+..++|++||+||+.|+.+++ ..++++.+++|+++.+.++|++..|++. ++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 66 456788999999999999999999999998775 4567788899999999999999999885 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. +...++||+.+|++ |++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~-G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMND-GRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeC-CeeeecCC
Confidence 9999999999999999999999999999999999999998764 899999999974 78889999999985 78888887
Q ss_pred CC
Q 000555 1064 LG 1065 (1427)
Q Consensus 1064 ~~ 1065 (1427)
+.
T Consensus 218 p~ 219 (338)
T COG3839 218 PL 219 (338)
T ss_pred hH
Confidence 63
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=334.36 Aligned_cols=207 Identities=26% Similarity=0.329 Sum_probs=184.1
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~l 243 (1427)
..++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+.... ..++.+|.++.+..++..|
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~Rl 90 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARL 90 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhh
Confidence 345899999999999999999999999999999999999987 99999999887432 4578999999777899999
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
|++|||.|.+++.+. ++. +.+.+++.+.+.|+|..|.|+.+|+
T Consensus 91 T~rEnl~~Fa~L~~l-----------~~~------------------------~~kari~~l~k~l~l~~~~~rRv~~-- 133 (245)
T COG4555 91 TARENLKYFARLNGL-----------SRK------------------------EIKARIAELSKRLQLLEYLDRRVGE-- 133 (245)
T ss_pred hHHHHHHHHHHHhhh-----------hhh------------------------HHHHHHHHHHHHhChHHHHHHHHhh--
Confidence 999999998887654 111 1223578899999999999998875
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
+|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++. ..|++||.+ +|..+|+..+||+|++|++
T Consensus 134 ---~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFS-SH~m~EvealCDrvivlh~ 208 (245)
T COG4555 134 ---FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFS-SHIMQEVEALCDRVIVLHK 208 (245)
T ss_pred ---hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEe-cccHHHHHHhhheEEEEec
Confidence 99999999999999999999999999999999999999999999974 459999998 5778999999999999999
Q ss_pred CeEEEecChHHHHH
Q 000555 404 GHLVYQGPRAEVLE 417 (1427)
Q Consensus 404 G~iv~~G~~~~~~~ 417 (1427)
|++++.|+.+++..
T Consensus 209 Gevv~~gs~~~l~~ 222 (245)
T COG4555 209 GEVVLEGSIEALDA 222 (245)
T ss_pred CcEEEcCCHHHHHH
Confidence 99999999998764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=335.96 Aligned_cols=217 Identities=26% Similarity=0.367 Sum_probs=184.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCC---CCceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK---TGGYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 902 (1427)
.++++|++..+. ++++|+|||+.|++++++|++|||||||||||++|.+.. ++-.++|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 578899987663 567999999999999999999999999999999998853 3446789999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-LRDALVGFPGS 976 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 976 (1427)
.++-. ..+|+.+|+|+|.+.-|| +|++||+.|+.++.... +++.++.|++.|+...|.+ .+|.+-. .+
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~--sa 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHK--SA 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhC--Cc
Confidence 87533 357899999999999999 99999999998775332 2677788999998888764 3444422 23
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
.+|||||+|||||||||+.+|+|||||||||+|||.+...|-+++.+++ +.-|||++||.+. ......|+..++.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 5799999999999999999999999999999999999999999999997 4689999999875 56778899999986 5
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
+++..|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 88888875
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=328.63 Aligned_cols=212 Identities=28% Similarity=0.370 Sum_probs=183.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
|+|+||+..|. .+ .++|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~-----------~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP-----------GG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC-----------CC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 67888875543 23 569999999999999999999999999999999999655 35799999999864
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 Q------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
. .-+||++|+|+||..+.++.||+||+.|..... ..++.+.+++|.++|+.+||.+.++.+. ..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccC
Confidence 3 235789999999999999999999999987665 4566778889999999999999888764 6899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hceEEEEecCcEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~gg~~~ 1059 (1427)
|||+||++||||++.+|++|+.||||-+|||..+..||+++.++...|.|||+.||+. ++.+. -.+++.|.+ |+++
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~~-Grl~ 216 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALED-GRLV 216 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEeC-CEEE
Confidence 9999999999999999999999999999999999999999999988899999999994 45554 467888886 5666
Q ss_pred EccC
Q 000555 1060 YGGK 1063 (1427)
Q Consensus 1060 ~~g~ 1063 (1427)
.+..
T Consensus 217 ~d~~ 220 (223)
T COG2884 217 RDES 220 (223)
T ss_pred eccc
Confidence 5543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=350.60 Aligned_cols=208 Identities=30% Similarity=0.455 Sum_probs=174.1
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCC--CCCCCCCH
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTD--NHIPELTV 245 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~--~~~~~lTV 245 (1427)
++|+|||+++++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+......+.+||||||.. .+-...||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 5999999999999999999999999999999999999986 999999998877665567899999943 23334799
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+|.+..+..-+.. +..... +++...++++|+.+|+.+..|..+|
T Consensus 95 ~d~V~~g~~~~~g------~~~~~~-------------------------~~d~~~v~~aL~~Vgm~~~~~r~i~----- 138 (254)
T COG1121 95 KDVVLLGRYGKKG------WFRRLN-------------------------KKDKEKVDEALERVGMEDLRDRQIG----- 138 (254)
T ss_pred HHHHHccCccccc------cccccc-------------------------HHHHHHHHHHHHHcCchhhhCCccc-----
Confidence 9999886321110 111111 1123458899999999987666665
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||+|||-|||||+++|++|+|||||+|+|+.++..|.++|+++.++ |+||+++ +|+...+.++||+|+.|+ ++
T Consensus 139 ~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~v-tHDL~~v~~~~D~vi~Ln-~~ 215 (254)
T COG1121 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMV-THDLGLVMAYFDRVICLN-RH 215 (254)
T ss_pred ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCcHHhHhhCCEEEEEc-Ce
Confidence 59999999999999999999999999999999999999999999999887 9999995 778889999999999996 57
Q ss_pred EEEecChHHHHH
Q 000555 406 LVYQGPRAEVLE 417 (1427)
Q Consensus 406 iv~~G~~~~~~~ 417 (1427)
+++.|+++++.+
T Consensus 216 ~~~~G~~~~~~~ 227 (254)
T COG1121 216 LIASGPPEEVLT 227 (254)
T ss_pred eEeccChhhccC
Confidence 889999998764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=370.06 Aligned_cols=215 Identities=29% Similarity=0.427 Sum_probs=192.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++||+..+ ++..+|+|||++|++||+++|+|||||||||||++|||... +.+|+|.++|.++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 57899987554 25679999999999999999999999999999999999876 3589999999987
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 906 EQ-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
.. ...+|.+|+|+|+..+||++||+||+.|+..++ ....+++..++++++++.++|++..+... ..||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 65 345788999999999999999999999998743 34456778889999999999999988876 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||+|||||+.+|++||||||.|+||..-+..++.-++++.+ .|.|.|++|||.. +...+.|||.+|++ |+++..|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 999999999999999999999999999999999999999875 4999999999975 78889999999986 78888887
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
+
T Consensus 221 P 221 (352)
T COG3842 221 P 221 (352)
T ss_pred H
Confidence 6
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=334.11 Aligned_cols=222 Identities=23% Similarity=0.387 Sum_probs=181.4
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCeecCcc-----cccceEEEEccCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLD--SSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDN 238 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~ 238 (1427)
++.+|+|||+.|+++++||++|||||||||||+++....+ |..+++|+|.++|+++.+. .+|+.+|.|+|.|.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 4569999999999999999999999999999999987654 3457899999999988543 46899999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcc-cccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDL-CSET 317 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t 317 (1427)
-|| +|++||+.|+.+..+... . +.| +.++..|+..+|.+ ..|.
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~-------------------~ld--------------eiVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--K-------------------ELD--------------EIVESSLKKAALWDEVKDR 142 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--H-------------------HHH--------------HHHHHHHHHhHhHHHhHHH
Confidence 999 899999999999877521 1 111 23455555555532 1221
Q ss_pred ccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCc
Q 000555 318 VVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 318 ~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~ 397 (1427)
. ++...+|||||+||++|||||+.+|+|||||||||+|||-++..|.+++.++.+ .-|||++ +|.+.+..+..|+
T Consensus 143 -L-~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviV-THnmqQAaRvSD~ 217 (253)
T COG1117 143 -L-HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIV-THNMQQAARVSDY 217 (253)
T ss_pred -h-hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEE-eCCHHHHHHHhHh
Confidence 1 223457999999999999999999999999999999999999999999999864 5788885 5678899999999
Q ss_pred EEEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHH
Q 000555 398 LLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFL 436 (1427)
Q Consensus 398 vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 436 (1427)
..++..|++++.|+.+++. ..|.++...||+
T Consensus 218 taFf~~G~LvE~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 218 TAFFYLGELVEFGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred hhhhcccEEEEEcCHHhhh--------cCccHHHHHHHh
Confidence 9999999999999999883 456666666654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=365.64 Aligned_cols=214 Identities=29% Similarity=0.416 Sum_probs=186.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++..+. ++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 588999987663 3469999999999999999999999999999999999865 3589999999986
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000555 906 EQ--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 983 (1427)
.. ...++.+|||+|++.+++.+||+||+.|.+.++ ..+..+..++++++++.++|.+..++.+ ++|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 235678999999999999999999999876543 2334444566889999999998888877 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999986 67788999999986 68888887
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 5
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=382.15 Aligned_cols=215 Identities=24% Similarity=0.443 Sum_probs=180.2
Q ss_pred cCCccccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEEEccC
Q 000555 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQT 236 (1427)
Q Consensus 160 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~ 236 (1427)
.++.+++.+||+|+|++|+|||.+||+|||||||||+.++|..+++|+ +|+|++||+|+.+.+ +++.||+|.|+
T Consensus 474 aYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QE 550 (716)
T KOG0058|consen 474 AYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQE 550 (716)
T ss_pred ecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeecc
Confidence 466777889999999999999999999999999999999999999986 999999999998765 57899999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccc
Q 000555 237 DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316 (1427)
Q Consensus 237 ~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 316 (1427)
|.+|.. ||+|||.|+.. .. .. +++.+..+.+ .. .+. ..++++.+|
T Consensus 551 PvLFs~-sI~eNI~YG~~--~~---t~---e~i~~AAk~A------Na-----------------h~F---I~~~p~gY~ 595 (716)
T KOG0058|consen 551 PVLFSG-SIRENIAYGLD--NA---TD---EEIEAAAKMA------NA-----------------HEF---ITNFPDGYN 595 (716)
T ss_pred ceeecc-cHHHHHhcCCC--CC---CH---HHHHHHHHHh------Ch-----------------HHH---HHhCccccc
Confidence 988865 99999999753 11 11 1111111111 11 122 235888999
Q ss_pred cccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcC
Q 000555 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 317 t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D 396 (1427)
|.||+++. .||||||||++|||||+.+|+||||||.||+||+++...+.+.|.+..+ ++||++.- | +-.+.+.+|
T Consensus 596 T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIA-H-RLSTV~~Ad 670 (716)
T KOG0058|consen 596 TVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIA-H-RLSTVRHAD 670 (716)
T ss_pred cccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEe-h-hhhHhhhcc
Confidence 99999987 5999999999999999999999999999999999999999999998875 58888743 3 457889999
Q ss_pred cEEEEeCCeEEEecChHHHHH
Q 000555 397 DLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 397 ~vilL~~G~iv~~G~~~~~~~ 417 (1427)
+|+++++|++++.|+++|+++
T Consensus 671 ~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 671 QIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999975
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=365.20 Aligned_cols=217 Identities=25% Similarity=0.338 Sum_probs=185.7
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++.+ .....+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6889998766311 113469999999999999999999999999999999999866 35899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 QS------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
.. ..++.+||++|+..+++..||+||+.+..... ..+.++..+++.++++.+||.+..|... ..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23668999999999999999999999876432 2345566677899999999998888765 5899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1059 (1427)
||||||++|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 46788999999986 6888
Q ss_pred EccCC
Q 000555 1060 YGGKL 1064 (1427)
Q Consensus 1060 ~~g~~ 1064 (1427)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 88875
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=364.68 Aligned_cols=206 Identities=25% Similarity=0.346 Sum_probs=177.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999986 999999999886532 356899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+..||+||+.|+.+..+.. +. +...++.++++.+||.+..|
T Consensus 95 ~~~tv~eni~~~~~~~~~~-----------~~------------------------~~~~~v~e~l~~vgL~~~~~---- 135 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP-----------KD------------------------EIKRKVTELLALVGLGDKHD---- 135 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHHcCCchhhh----
Confidence 9999999999976543220 00 01123677899999986544
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
+.+..|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++.+.|+|+++ |..+.+.++||+|++
T Consensus 136 -~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliT-H~~~~v~~~~d~v~v 213 (343)
T TIGR02314 136 -SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLIT-HEMDVVKRICDCVAV 213 (343)
T ss_pred -CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEE
Confidence 455679999999999999999999999999999999999999999999999877789999965 556778899999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|++++.|+++++.
T Consensus 214 l~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 214 ISNGELIEQGTVSEIF 229 (343)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=332.90 Aligned_cols=206 Identities=27% Similarity=0.341 Sum_probs=179.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc----cccceEEEEccCC--CCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF----HVQRTSAYISQTD--NHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~~--~~~ 240 (1427)
.++|+|||+++.+||.++|+|+||||||||.++|+|..+|+ +|+|+++|.+.... ...+.+-+|+||+ .+-
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 37999999999999999999999999999999999999986 99999999877554 2467899999997 477
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
|..||++.|.-+.+..+.. +.+.++.++|+.+||+. .+-
T Consensus 97 P~~tv~~~l~Epl~~~~~~-------------------------------------~~~~~i~~~L~~VgL~~----~~l 135 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLS-------------------------------------KSQQRIAELLDQVGLPP----SFL 135 (252)
T ss_pred cchhHHHHHhhhhccCCcc-------------------------------------HHHHHHHHHHHHcCCCH----HHH
Confidence 8999999997765543221 01122677899999975 355
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
++.+.+|||||||||+|||||..+|++|++|||||+||++...+|++.|.++.++++.|.|+ +.|+..-+..+||||++
T Consensus 136 ~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~-IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 136 DRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLF-ISHDLALVEHMCDRIAV 214 (252)
T ss_pred hcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEE-EeCcHHHHHHHhhheee
Confidence 67788899999999999999999999999999999999999999999999999998999998 46788899999999999
Q ss_pred EeCCeEEEecChHHHHH
Q 000555 401 LSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~~ 417 (1427)
|++|++++.++.+++..
T Consensus 215 m~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 215 MDNGQIVEIGPTEELLS 231 (252)
T ss_pred eeCCeEEEeechhhhhc
Confidence 99999999999999864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=349.70 Aligned_cols=214 Identities=24% Similarity=0.362 Sum_probs=180.3
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35788877652 24689999999999999999999999999999999998653 5799999998754
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 Q------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
. ..+++.++|++|++.+++.+||+||+.+...... ..+.++..+.++++++.++|.+..++.+ ..||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 3 2345679999999999999999999988643221 2234445567889999999988777765 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1059 (1427)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999998764 899999999976 46778999999986 6788
Q ss_pred EccCC
Q 000555 1060 YGGKL 1064 (1427)
Q Consensus 1060 ~~g~~ 1064 (1427)
+.|+.
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 88764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=380.75 Aligned_cols=219 Identities=26% Similarity=0.419 Sum_probs=183.9
Q ss_pred CCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECC
Q 000555 823 QPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG 902 (1427)
Q Consensus 823 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g 902 (1427)
-...|+|+||+|.|+.. ++.++|||+||+|+|||.+|||||||+||||+.+.|.+..+ +.+|+|.+||
T Consensus 462 ~~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG 529 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDG 529 (716)
T ss_pred ccceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECC
Confidence 34579999999999764 35679999999999999999999999999999999998766 4589999999
Q ss_pred ccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHH---HcCCcccccccccCCCC
Q 000555 903 YPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR---LVELDSLRDALVGFPGS 976 (1427)
Q Consensus 903 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~---~l~L~~~~~~~vg~~~~ 976 (1427)
+|+++ ..+|+++|+|.|+|.+|. -||+||+.|+.. ..++++....++..-. ..++.+-.||.||..|.
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 99765 457899999999999986 599999999854 3344433222221111 13667779999997664
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
.||||||||++|||||++||+||+|||+||+||++++..|+++|.++.+ ++|||+++|+.+ +.+.+|+|+|+++ |
T Consensus 604 -qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G 678 (716)
T KOG0058|consen 604 -QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-G 678 (716)
T ss_pred -cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-C
Confidence 6999999999999999999999999999999999999999999988765 699999999975 6788999999986 7
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
+++..|..
T Consensus 679 ~V~E~G~h 686 (716)
T KOG0058|consen 679 RVVEMGTH 686 (716)
T ss_pred eEEecccH
Confidence 89998864
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=366.54 Aligned_cols=214 Identities=26% Similarity=0.385 Sum_probs=187.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++.+++ .+.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478999987653 3468999999999999999999999999999999999865 3589999999876
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 906 EQ-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
.. ...+|.+|||+|+..++|++||+||+.|+...+ ..+.++..++++++++.++|.+..+... ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 234577999999999999999999999986543 2345566778999999999999888765 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999986 68889999999986 68888887
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 5
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=315.27 Aligned_cols=201 Identities=26% Similarity=0.389 Sum_probs=175.0
Q ss_pred CeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc-cceEEEEccCCCCCCCCCHHHHHH
Q 000555 172 DVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-QRTSAYISQTDNHIPELTVRETFD 250 (1427)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1427)
..++.|++||++||+||||||||||||.|+|...|. +|+|.+||++.+...+ .|-++.++|+.++|..+||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 468899999999999999999999999999999886 9999999999876554 577999999999999999999999
Q ss_pred HHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChH
Q 000555 251 FAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330 (1427)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 330 (1427)
++..- +.+ ++.. .+++++.++..+||..+.+ +.+.+||||
T Consensus 94 LGl~P-----~Lk-----L~a~-------------------------~r~~v~~aa~~vGl~~~~~-----RLP~~LSGG 133 (231)
T COG3840 94 LGLSP-----GLK-----LNAE-------------------------QREKVEAAAAQVGLAGFLK-----RLPGELSGG 133 (231)
T ss_pred ccCCc-----ccc-----cCHH-------------------------HHHHHHHHHHHhChhhHhh-----hCccccCch
Confidence 86321 110 1111 1234788999999987654 456679999
Q ss_pred HhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEec
Q 000555 331 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQG 410 (1427)
Q Consensus 331 qkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G 410 (1427)
|||||++||+|+++.+|++||||+|+||+.-+.+....+.+++.+.+.|++|++||| ++...++|+++++++|+|.++|
T Consensus 134 qRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g 212 (231)
T COG3840 134 QRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQG 212 (231)
T ss_pred HHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeec
Confidence 999999999999999999999999999999999999999999999999999988776 5788999999999999999999
Q ss_pred ChHHHH
Q 000555 411 PRAEVL 416 (1427)
Q Consensus 411 ~~~~~~ 416 (1427)
+.++..
T Consensus 213 ~~~~~~ 218 (231)
T COG3840 213 STQELL 218 (231)
T ss_pred cHHHHh
Confidence 998875
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=366.20 Aligned_cols=215 Identities=27% Similarity=0.380 Sum_probs=186.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++..++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 378899887652 13468999999999999999999999999999999999865 3589999999876
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 906 EQ-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
.. ...++.+|||+|++.++|++||+||+.|....+ ..+..+..++++++++.++|.+..+..+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 43 223578999999999999999999999986532 2345556678899999999999888876 48999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++...+|++++|++ |+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECC
Confidence 9999999999999999999999999999999999999998765 899999999985 68889999999985 68888887
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 219 ~ 219 (356)
T PRK11650 219 P 219 (356)
T ss_pred H
Confidence 5
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=315.30 Aligned_cols=196 Identities=27% Similarity=0.387 Sum_probs=172.6
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc-ccccceEEEEccCCCCCCCCCHHHHHHH
Q 000555 857 NVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFARISGYVEQNDIHSPQVTVEESLWF 935 (1427)
Q Consensus 857 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 935 (1427)
..++.|.+||++||+||||||||||||.|+|...+ .+|+|.|||.+... ....|-+++++|+..+|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 57889999999999999999999999999998764 58999999998654 3466779999999999999999999987
Q ss_pred HHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000555 936 SANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015 (1427)
Q Consensus 936 ~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~ 1015 (1427)
+..-. -..+. +.+++++.++..+||..+.+.+. ..||||||||+++||+|+++-+||+||||+|+|||.-+.
T Consensus 95 Gl~P~--LkL~a-~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPG--LKLNA-EQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcc--cccCH-HHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 64322 12333 34567899999999999998876 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1016 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1016 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
++..++.++++ ++.|++++||+|+ +.....|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999975 5899999999997 78899999999986 799999975
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=363.78 Aligned_cols=214 Identities=26% Similarity=0.418 Sum_probs=187.2
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 578999987652 2458999999999999999999999999999999999876 3589999999876
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 906 EQS-TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
... ..+|.+|||+|+..++|++||+||+.|+...+ ..+..+..++++++++.++|.+..+... ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 23578999999999999999999999986543 2345666778999999999998887765 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999986 68889999999986 67888887
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 221 ~ 221 (351)
T PRK11432 221 P 221 (351)
T ss_pred H
Confidence 5
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=364.35 Aligned_cols=208 Identities=20% Similarity=0.308 Sum_probs=178.6
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc-------cceEEEEccCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-------QRTSAYISQTDN 238 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~ 238 (1427)
.+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 356999999999999999999999999999999999999986 9999999999865432 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
+++.+||+||+.|+.+..+.. +. +...++.++++.+||+...+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~vgL~~~~~-- 124 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWP-----------EQ------------------------ERKEKALELLKLVGLEEYEH-- 124 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHhcCCchhhh--
Confidence 999999999999986654321 00 01123677899999975444
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
+.+..|||||||||+|||||+.+|+|+||||||+|||+.++..+.+.|+++.++.++|+|+++ |...++.++||+|
T Consensus 125 ---~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vT-Hd~~ea~~~~drI 200 (363)
T TIGR01186 125 ---RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT-HDLDEAIRIGDRI 200 (363)
T ss_pred ---CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEE
Confidence 445579999999999999999999999999999999999999999999998766689999964 5567889999999
Q ss_pred EEEeCCeEEEecChHHHHH
Q 000555 399 LLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~~ 417 (1427)
++|++|+++..|+++++..
T Consensus 201 ~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 201 VIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEEeCCEEEeeCCHHHHHh
Confidence 9999999999999998763
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=344.89 Aligned_cols=207 Identities=26% Similarity=0.397 Sum_probs=181.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecC----cccccceEEEEccCC-CCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD----EFHVQRTSAYISQTD-NHIP 241 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~~-~~~~ 241 (1427)
..+|+|+|+.+++|+.++|+||||||||||+++|+|++.|. +|+|.++|.+.. ....++.+|||+|+| ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999986 899999999875 335678999999985 5677
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
..||.|.++|+.+..+.+. ++ .+.+++++++.+||.+.. +
T Consensus 94 ~~tV~~evafg~~n~g~~~---------------------~e--------------~~~rv~~~l~~vgl~~~~-----~ 133 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR---------------------EE--------------IEERVAEALELVGLEELL-----D 133 (235)
T ss_pred cCcHHHHHhhchhhcCCCH---------------------HH--------------HHHHHHHHHHHcCchhhc-----c
Confidence 8899999999988776521 00 123578899999998654 4
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
+.+..|||||||||+||.+|+.+|++++|||||||||+..+.++++.++++.++.++|+|++ +|....+.+++|++++|
T Consensus 134 r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~-tHd~~~~~~~ad~v~vl 212 (235)
T COG1122 134 RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-THDLELVLEYADRVVVL 212 (235)
T ss_pred CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE-eCcHHHHHhhCCEEEEE
Confidence 55677999999999999999999999999999999999999999999999988777899986 56788999999999999
Q ss_pred eCCeEEEecChHHHHH
Q 000555 402 SEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~~ 417 (1427)
++|+++++|+++++.+
T Consensus 213 ~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 213 DDGKILADGDPAEIFN 228 (235)
T ss_pred ECCEEeecCCHHHHhh
Confidence 9999999999988764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=363.94 Aligned_cols=214 Identities=27% Similarity=0.383 Sum_probs=186.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeE--EEEEECCc
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE--GDIKISGY 903 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~--G~i~i~g~ 903 (1427)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 478999987663 24589999999999999999999999999999999997653 46 99999998
Q ss_pred cCCc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 904 PKEQ-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 904 ~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
+... ...++.+|||+|+..++|++||+||+.|....+ ..+..+..++++++++.++|++..++.+ ..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 224567999999999999999999999986543 2445566678999999999999888876 589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999875 799999999986 67888999999986 68888
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 8875
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=365.55 Aligned_cols=207 Identities=26% Similarity=0.380 Sum_probs=178.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV 245 (1427)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.+|||+|++.+++.+||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 46999999999999999999999999999999999999876 999999999886543 34789999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.|+.+.++.. +. +...+++++++.+||++.. ++.++
T Consensus 94 ~eNi~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~gL~~~~-----~~~~~ 133 (356)
T PRK11650 94 RENMAYGLKIRGMP-----------KA------------------------EIEERVAEAARILELEPLL-----DRKPR 133 (356)
T ss_pred HHHHHhHHhhcCCC-----------HH------------------------HHHHHHHHHHHHcCChhHh-----hCChh
Confidence 99999986543210 00 0112467889999997644 45566
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+|||||+.+|++||||||||+||+.++..+.+.|+++.++.+.|+|+++| ...++.+++|+|++|++|+
T Consensus 134 ~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTH-DQVEAMTLADRVVVMNGGV 212 (356)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999998777899998754 5578999999999999999
Q ss_pred EEEecChHHHHH
Q 000555 406 LVYQGPRAEVLE 417 (1427)
Q Consensus 406 iv~~G~~~~~~~ 417 (1427)
++..|+++++.+
T Consensus 213 i~~~g~~~~~~~ 224 (356)
T PRK11650 213 AEQIGTPVEVYE 224 (356)
T ss_pred EEEECCHHHHHh
Confidence 999999998753
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=321.41 Aligned_cols=206 Identities=27% Similarity=0.409 Sum_probs=182.4
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcccc----cceEEEEccCCCCCC
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTF----ARISGYVEQNDIHSP 925 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~----~~~~gyv~Q~~~~~~ 925 (1427)
+++++++|||+.|++||++|++|||||||||.+.++.|... +.+|+|.+||.+++.... +.-+||+||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 56789999999999999999999999999999999999765 357999999998876432 234899999999999
Q ss_pred CCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000555 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005 (1427)
Q Consensus 926 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEP 1005 (1427)
.+||+||+......+.. +....++++.++++++.+++.++++..- ..||||||+|+-|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999887766531 2233466677899999999999999875 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCC
Q 000555 1006 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 1006 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~ 1065 (1427)
++|+||.+...|+++++.+++.|..|++|-|..+ ++...+||.+++.+ |++...|.+.
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 9999999999999999999999999999999987 78999999999997 6888888763
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=363.86 Aligned_cols=206 Identities=23% Similarity=0.403 Sum_probs=179.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc-cceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-QRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1427)
..+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999986 9999999998865443 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.|+.+.++... . +...+++++++.+||.+.. ++.++
T Consensus 96 ~eNi~~~l~~~~~~~-----------~------------------------~~~~~v~~~l~~~gl~~~~-----~r~~~ 135 (351)
T PRK11432 96 GENVGYGLKMLGVPK-----------E------------------------ERKQRVKEALELVDLAGFE-----DRYVD 135 (351)
T ss_pred HHHHHHHHhHcCCCH-----------H------------------------HHHHHHHHHHHHcCCchhh-----cCChh
Confidence 999999876543210 0 0112467889999997543 55567
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.++|+|+++ |...++.+++|+|++|++|+
T Consensus 136 ~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vT-Hd~~e~~~laD~i~vm~~G~ 214 (351)
T PRK11432 136 QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVT-HDQSEAFAVSDTVIVMNKGK 214 (351)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc-CCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999877789999864 55678999999999999999
Q ss_pred EEEecChHHHH
Q 000555 406 LVYQGPRAEVL 416 (1427)
Q Consensus 406 iv~~G~~~~~~ 416 (1427)
++..|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (351)
T PRK11432 215 IMQIGSPQELY 225 (351)
T ss_pred EEEEcCHHHHH
Confidence 99999999875
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=364.13 Aligned_cols=207 Identities=25% Similarity=0.405 Sum_probs=179.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV 245 (1427)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .+|.++||+|+..+||.+||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999886 999999999886533 35789999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.|+.+.++.. +.+ ...+++++++.+||++..+ +.+.
T Consensus 94 ~eNi~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~l~L~~~~~-----~~~~ 133 (353)
T TIGR03265 94 ADNIAYGLKNRGMG-----------RAE------------------------VAERVAELLDLVGLPGSER-----KYPG 133 (353)
T ss_pred HHHHHHHHHhcCCC-----------HHH------------------------HHHHHHHHHHHcCCCchhh-----CChh
Confidence 99999986543220 000 1124678999999986544 4566
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.++.+.|+|+++ |...++..++|+|++|++|+
T Consensus 134 ~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vT-Hd~~ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 134 QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVT-HDQEEALSMADRIVVMNHGV 212 (353)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc-CCHHHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999877789999875 55578899999999999999
Q ss_pred EEEecChHHHHH
Q 000555 406 LVYQGPRAEVLE 417 (1427)
Q Consensus 406 iv~~G~~~~~~~ 417 (1427)
+++.|+++++.+
T Consensus 213 i~~~g~~~~~~~ 224 (353)
T TIGR03265 213 IEQVGTPQEIYR 224 (353)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=360.16 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=185.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 589999987663 34699999999999999999999999999999999998663 589999999876
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000555 906 EQ--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 983 (1427)
.. ...++.+||++|++.+++.+||+|++.+.+.+. ..+..+..+.++++++.++|.+..++.++ +|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHH
Confidence 43 234677999999999999999999998765443 12333445567889999999988888874 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 67788999999986 68888887
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 256 ~ 256 (340)
T PRK13536 256 P 256 (340)
T ss_pred H
Confidence 5
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=340.46 Aligned_cols=210 Identities=30% Similarity=0.440 Sum_probs=176.0
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 5678876552 2468999999999999999999999999999999999765 357999999987643
Q ss_pred -ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000555 908 -STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKR 986 (1427)
Q Consensus 908 -~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqr 986 (1427)
...++.++|++|++.+++.+|++||+.+..... ....+...+.++++++.+++.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 223467999999999999999999998765332 1233344556889999999988777765 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 987 l~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
++||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4899999999975 46778999999986 5666543
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=341.05 Aligned_cols=207 Identities=26% Similarity=0.344 Sum_probs=175.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 578898876631 12458999999999999999999999999999999999765 35799999998753
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 QS------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
.. .+++.++|++|++.+++.+||+||+.+....+ ....++..+.++++++.++|.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 24567999999999999999999998875432 1223344567889999999988777765 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+...+|++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999998777899999999975 466789999999864
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=357.54 Aligned_cols=206 Identities=28% Similarity=0.383 Sum_probs=176.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~lT 244 (1427)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999886 99999999987542 24578999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.|.++.++... . +...+++++++.++|.+..++.+
T Consensus 97 v~e~l~~~~~~~~~~~-----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~----- 136 (306)
T PRK13537 97 VRENLLVFGRYFGLSA-----------A------------------------AARALVPPLLEFAKLENKADAKV----- 136 (306)
T ss_pred HHHHHHHHHHHcCCCH-----------H------------------------HHHHHHHHHHHHcCCchHhcCch-----
Confidence 9999998665543210 0 00123567889999987666655
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
++|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||++. |...++.++||+|++|++|
T Consensus 137 ~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~s-H~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTT-HFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEC-CCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999864 489999975 5567889999999999999
Q ss_pred eEEEecChHHHHH
Q 000555 405 HLVYQGPRAEVLE 417 (1427)
Q Consensus 405 ~iv~~G~~~~~~~ 417 (1427)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~l~~ 227 (306)
T PRK13537 215 RKIAEGAPHALIE 227 (306)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=360.99 Aligned_cols=217 Identities=26% Similarity=0.397 Sum_probs=185.5
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+. .+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 367889887652 2468999999999999999999999999999999999865 3579999999876
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCC-cCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000555 906 EQ-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 983 (1427)
.. ...++.+|||+|++.++|++||+||+.|....... ...+.++..++++++++.++|.+..+..+ ..|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 43 23356799999999999999999999997653211 12344556678899999999998888775 5899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++...+|++++|++ |++++.|
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g 219 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAG 219 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999998765 899999999986 67888999999986 6888888
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
+.
T Consensus 220 ~~ 221 (353)
T PRK10851 220 TP 221 (353)
T ss_pred CH
Confidence 75
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=339.79 Aligned_cols=215 Identities=26% Similarity=0.399 Sum_probs=187.8
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.+.++|++|+++. . ..+|+|+|++|++||.++|+|+||||||||+++|+|...+ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~-----------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG-----------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC-----------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 3688999987742 2 5799999999999999999999999999999999998763 469999999985
Q ss_pred C----cccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 906 E----QSTFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 906 ~----~~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
. ...+++.+|||+|++. .+..-||.|.+.|+..-. ..+.++.+++++++++.+++.+.++... ..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccC
Confidence 4 3467889999999974 456789999999986432 4566678889999999999999988765 5899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1059 (1427)
|||||||+||.+|+.+|++|+|||||||||+.+...+++.++++..+ |.|||+++|+.. .+.+.+|++++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999876 689999999986 57788999999986 6888
Q ss_pred EccCC
Q 000555 1060 YGGKL 1064 (1427)
Q Consensus 1060 ~~g~~ 1064 (1427)
+.|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 88874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=326.84 Aligned_cols=217 Identities=28% Similarity=0.367 Sum_probs=178.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++.+|++..++... ....+|+|||++|.+||.+||+|+||||||||.++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 468889887664321 123699999999999999999999999999999999998763 589999999875
Q ss_pred Ccc----cccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 000555 906 EQS----TFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL-RDALVGFPGSSG 978 (1427)
Q Consensus 906 ~~~----~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 978 (1427)
... .+.+.+.+|+||+ .+.|..||++.|.=.... ...++.+ +++.++++.+||.+. .+.. +..
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chh
Confidence 442 4678899999998 577999999988655433 2233333 338999999999754 3332 367
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 979 LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
||||||||+||||||+.+|++|++|||||+||+..+.+|+++|.++.++ +.|.|+++||.+. +...|||++||++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999764 7899999999763 7778999999986 68
Q ss_pred EEEccCCC
Q 000555 1058 VIYGGKLG 1065 (1427)
Q Consensus 1058 ~~~~g~~~ 1065 (1427)
++..+|.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 88888763
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=313.63 Aligned_cols=200 Identities=27% Similarity=0.398 Sum_probs=173.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1427)
.++|+|||+.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++.... .+|+||.|+|+..++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 56999999999999999999999999999999999999986 999999999986542 578999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+..||.||++|+.+..+.++ .+.+.++.++|+.+||.+.++
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~-----------------------------------~~i~~rV~~~L~~VgL~~k~~---- 132 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP-----------------------------------REIRRRVSEVLDLVGLKHKAR---- 132 (223)
T ss_pred ccchHhhhhhhhhhccCCCH-----------------------------------HHHHHHHHHHHHHhccchhhh----
Confidence 99999999999988776421 112345788999999987554
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
..+..|||||||||+||||++.+|++|+.||||-.||+..+..|++.+.++- ..|+||++++ |+..-+-.+--+++.
T Consensus 133 -~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein-r~GtTVl~AT-Hd~~lv~~~~~rvl~ 209 (223)
T COG2884 133 -ALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN-RLGTTVLMAT-HDLELVNRMRHRVLA 209 (223)
T ss_pred -cCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh-hcCcEEEEEe-ccHHHHHhccCcEEE
Confidence 3466799999999999999999999999999999999999999999999985 5699999985 455556667779999
Q ss_pred EeCCeEEEecC
Q 000555 401 LSEGHLVYQGP 411 (1427)
Q Consensus 401 L~~G~iv~~G~ 411 (1427)
|++|+++....
T Consensus 210 l~~Grl~~d~~ 220 (223)
T COG2884 210 LEDGRLVRDES 220 (223)
T ss_pred EeCCEEEeccc
Confidence 99999987643
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=369.58 Aligned_cols=216 Identities=29% Similarity=0.465 Sum_probs=179.4
Q ss_pred CCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEE
Q 000555 821 PFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKI 900 (1427)
Q Consensus 821 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i 900 (1427)
+.-+..++|+||+|++.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|..+ +.+|+|.+
T Consensus 466 ~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence 344557999999998853 23469999999999999999999999999999999999876 35899999
Q ss_pred CCccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHc-------CCccccccc
Q 000555 901 SGYPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV-------ELDSLRDAL 970 (1427)
Q Consensus 901 ~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~ 970 (1427)
||++.+. ..+|+.+|||+||+.++. -|++||+.++. .+.+.++ +.++++.. .+..-.|+.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhcccccccc
Confidence 9998654 568899999999998875 69999998753 2233232 22333332 344456788
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEE
Q 000555 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1050 (1427)
Q Consensus 971 vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1050 (1427)
+|.. +.+||||||||++|||||+++|+||+||||||+||+.+++.|++.|.+.. +|+|+|+++|+++ ++..+|+|+
T Consensus 603 v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEE
Confidence 8754 46899999999999999999999999999999999999999999999875 4799999999975 688999999
Q ss_pred EEecCcEEEEccCC
Q 000555 1051 LMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1051 ~l~~gg~~~~~g~~ 1064 (1427)
||++ |+++..|+.
T Consensus 679 Vl~~-Gkiv~~gs~ 691 (709)
T COG2274 679 VLDQ-GKIVEQGSH 691 (709)
T ss_pred EccC-CceeccCCH
Confidence 9985 799999986
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=360.92 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=186.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999987663 2468999999999999999999999999999999999876 3589999999876
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 906 EQ-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
.. ...+|.+|||+|++.++|++||+||+.|+...+ ..+..+..+.++++++.++|.+..+..+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223577999999999999999999999986533 2344555667899999999998888876 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++...+|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999985 68889999999986 68888887
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 5
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=338.79 Aligned_cols=215 Identities=28% Similarity=0.409 Sum_probs=179.1
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 577887655310 011469999999999999999999999999999999999865 357999999987642
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000555 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRL 987 (1427)
Q Consensus 908 ~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl 987 (1427)
.++.++|++|++.+++.+|++||+.+....+ ....+...+.++++++.++|.+..+..+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 4567999999999899999999998875432 1233344567889999999988777765 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEec-CcEEEEccCC
Q 000555 988 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYGGKL 1064 (1427)
Q Consensus 988 ~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~g~~ 1064 (1427)
+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ .|+++..+++
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999865 4899999999985 46778999999985 4788877664
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=337.09 Aligned_cols=209 Identities=24% Similarity=0.426 Sum_probs=176.7
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchh
Confidence 35778876552 2458999999999999999999999999999999999765 35899999998764
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000555 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKR 986 (1427)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqr 986 (1427)
. ..++.++|++|++.+++.+|++||+.+....+ ..+..+..+.++++++.+++.+..++.+ ..||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHH
Confidence 3 34567999999999999999999998865443 1233344566889999999988777665 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 987 l~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
++||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~ 209 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLY 209 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEec
Confidence 99999999999999999999999999999999999998877899999999975 46678999999986 566654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=362.47 Aligned_cols=207 Identities=23% Similarity=0.376 Sum_probs=178.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV 245 (1427)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|++.++|.+||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999876 999999999886543 35779999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.|+.+.++.. +. +...+++++++.+||++..+ +.+.
T Consensus 104 ~eNi~~~l~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~-----~~p~ 143 (375)
T PRK09452 104 FENVAFGLRMQKTP-----------AA------------------------EITPRVMEALRMVQLEEFAQ-----RKPH 143 (375)
T ss_pred HHHHHHHHhhcCCC-----------HH------------------------HHHHHHHHHHHHcCCchhhh-----CChh
Confidence 99999986543210 00 00123677899999976544 4556
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+|||||+.+|++||||||+++||..++..+.+.|+++.++.+.|+|+++ |...++..++|+|++|++|+
T Consensus 144 ~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vT-Hd~~ea~~laDri~vl~~G~ 222 (375)
T PRK09452 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVT-HDQEEALTMSDRIVVMRDGR 222 (375)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999887789999864 55678999999999999999
Q ss_pred EEEecChHHHHH
Q 000555 406 LVYQGPRAEVLE 417 (1427)
Q Consensus 406 iv~~G~~~~~~~ 417 (1427)
++..|+++++..
T Consensus 223 i~~~g~~~~i~~ 234 (375)
T PRK09452 223 IEQDGTPREIYE 234 (375)
T ss_pred EEEEcCHHHHHh
Confidence 999999998853
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=361.14 Aligned_cols=207 Identities=24% Similarity=0.361 Sum_probs=178.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCce--eEEEECCeecCccc-ccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKS--GNITYNGYKLDEFH-VQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~--G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~l 243 (1427)
..+|+|+|+++++||+++|+|||||||||||++|+|+++|+ + |+|.++|+++.... .++.++||+|+..+++.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35999999999999999999999999999999999999886 7 99999999886543 256799999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||+||+.|+.+.++.. +. +...+++++++.+||++.. ++.
T Consensus 95 tv~enl~~~l~~~~~~-----------~~------------------------~~~~~v~~~l~~~gL~~~~-----~~~ 134 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP-----------KA------------------------DIAERVADALKLVGLGDAA-----AHL 134 (362)
T ss_pred cHHHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHhcCCCchh-----hCC
Confidence 9999999987543321 00 0112467889999998654 445
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQM-DATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~-~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
++.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++. |.|+|+++ |...++..++|+|++|+
T Consensus 135 ~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vT-Hd~~ea~~l~dri~vl~ 213 (362)
T TIGR03258 135 PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVT-HDQDDALTLADKAGIMK 213 (362)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEe-CCHHHHHHhCCEEEEEE
Confidence 56799999999999999999999999999999999999999999999987765 78998864 55678899999999999
Q ss_pred CCeEEEecChHHHHH
Q 000555 403 EGHLVYQGPRAEVLE 417 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~ 417 (1427)
+|+++..|+++++.+
T Consensus 214 ~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 214 DGRLAAHGEPQALYD 228 (362)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999998853
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=338.26 Aligned_cols=213 Identities=29% Similarity=0.386 Sum_probs=179.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecC
Confidence 35778877652 2468999999999999999999999999999999999765 35899999998653
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 907 Q--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 907 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
. ...++.++|++|++.+++.+||+|++.+....+ ..+.++..+.++++++.++|.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 234567999999999999999999998875443 1233344566889999999988777765 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++...+|++++|++ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999876 899999999976 57778999999986 67777765
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 4
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=336.41 Aligned_cols=211 Identities=28% Similarity=0.407 Sum_probs=177.1
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++++|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 35788877653 2468999999999999999999999999999999999865 35799999998764
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 907 QS-TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 907 ~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
.. ..++.++|++|++.+++..|++||+.+..... ....++..+.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 32 23457999999998889999999998865432 1233444567889999999988777765 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999764 899999999975 56778999999986 5666654
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=355.85 Aligned_cols=202 Identities=28% Similarity=0.429 Sum_probs=176.1
Q ss_pred cceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc--ccccceEEEEccCCCCCCCCC
Q 000555 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ--STFARISGYVEQNDIHSPQVT 928 (1427)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 928 (1427)
++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3569999999999999999999999999999999999865 357999999987643 234567999999999999999
Q ss_pred HHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000555 929 VEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008 (1427)
Q Consensus 929 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsg 1008 (1427)
|+||+.+.+.++ ..+..+..+.++++++.++|.+..++.+ +.||||||||++||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 2233444567889999999998888876 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1009 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1009 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
||+.++..+++.|+++.++|+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 57788999999986 688888875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=353.62 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=182.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999987663 2468999999999999999999999999999999999765 3579999999875
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000555 906 EQ--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 983 (1427)
.. ...++.+||++|++.+++.+||+||+.+..... ..+..+..+.++++++.++|.+..++.+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 234567999999999999999999998755432 1233444456788999999998888776 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 57788999999986 68888887
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=354.85 Aligned_cols=206 Identities=25% Similarity=0.389 Sum_probs=175.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~lT 244 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.+||++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999886 99999999987532 23567999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.+.++..+... .+ ...+++++++.+||++..++. +
T Consensus 83 v~e~l~~~~~~~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~-----~ 122 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK-----------DE------------------------AEERAEELLELFELGEAADRP-----V 122 (302)
T ss_pred HHHHHHHHHHHcCCCH-----------HH------------------------HHHHHHHHHHHcCChhHhCCc-----h
Confidence 9999998765543200 00 012367789999998655554 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++. |...++.++||+|++|++|
T Consensus 123 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~s-H~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTT-HYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEC-CCHHHHHHhCCEEEEEECC
Confidence 569999999999999999999999999999999999999999999998654 88999875 5567888999999999999
Q ss_pred eEEEecChHHHHH
Q 000555 405 HLVYQGPRAEVLE 417 (1427)
Q Consensus 405 ~iv~~G~~~~~~~ 417 (1427)
++++.|+++++.+
T Consensus 201 ~i~~~g~~~~l~~ 213 (302)
T TIGR01188 201 RIIAEGTPEELKR 213 (302)
T ss_pred EEEEECCHHHHHH
Confidence 9999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=358.45 Aligned_cols=214 Identities=25% Similarity=0.394 Sum_probs=186.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++..+. +..+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999987652 2468999999999999999999999999999999999876 3589999999876
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 906 EQ-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
.. ...+|.+|||+|++.++|++||+||+.|....+ ..+..+..++++++++.++|.+..+..+ .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999986533 2345566678899999999998888765 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++||++. ++...+|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999986 67889999999986 68888887
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 5
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=357.58 Aligned_cols=217 Identities=24% Similarity=0.339 Sum_probs=183.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|++++++.. ..++++|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5789998876310 113569999999999999999999999999999999999865 35799999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 QS------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
.. .+++.+||++|++.+++.+||+||+.+..... ..+.++..+.++++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999875433 2334445567889999999988877765 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1059 (1427)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 56778999999986 6888
Q ss_pred EccCC
Q 000555 1060 YGGKL 1064 (1427)
Q Consensus 1060 ~~g~~ 1064 (1427)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 88764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=337.35 Aligned_cols=214 Identities=28% Similarity=0.431 Sum_probs=179.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++.. .+..++|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5788888765311 011269999999999999999999999999999999999865 35799999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 907 Q--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 907 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
. ..+++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+++.+..+..+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999999999999999998765432 2234445567889999999988777765 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
||++||+||+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYE 217 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeec
Confidence 9999999999999999999999999999999999999999777999999999975 57778999999986 566654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=342.09 Aligned_cols=207 Identities=26% Similarity=0.357 Sum_probs=172.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc------cccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF------HVQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~~~~~~~yv~Q~~~~~ 240 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999875 89999999987542 2356799999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+.+||+||+.++...... . ... ....+++++++.+||++..+
T Consensus 90 ~~~tv~~~l~~~~~~~~~---~-------~~~------------------------~~~~~~~~~l~~~~l~~~~~---- 131 (235)
T cd03261 90 DSLTVFENVAFPLREHTR---L-------SEE------------------------EIREIVLEKLEAVGLRGAED---- 131 (235)
T ss_pred CCCcHHHHHHHHHhhccC---C-------CHH------------------------HHHHHHHHHHHHcCCchhhc----
Confidence 999999999986432110 0 000 00113567889999975443
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
+.+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++++.++|||++.| ...++.++||+|++
T Consensus 132 -~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH-~~~~~~~~~d~v~~ 209 (235)
T cd03261 132 -LYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTH-DLDTAFAIADRIAV 209 (235)
T ss_pred -CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEec-CHHHHHHhcCEEEE
Confidence 4455799999999999999999999999999999999999999999999987655889988754 45678889999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|++++.|+++++.
T Consensus 210 l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 210 LYDGKIVAEGTPEELR 225 (235)
T ss_pred EECCeEEEecCHHHHc
Confidence 9999999999988764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=384.25 Aligned_cols=207 Identities=26% Similarity=0.461 Sum_probs=173.7
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEEEccCCCCCCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~lT 244 (1427)
.+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|.+||++++... .|+.+|||+|++.+| +-|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCc
Confidence 6999999999999999999999999999999999999986 999999999987654 689999999998555 569
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.++.. +.+-++.++++...+. .+. ...++..+||.+|+.+.
T Consensus 563 I~eNi~l~~p--------------------------~~~~e~i~~A~~~ag~-----~~f---I~~lP~gy~t~v~E~G~ 608 (709)
T COG2274 563 IRENIALGNP--------------------------EATDEEIIEAAQLAGA-----HEF---IENLPMGYDTPVGEGGA 608 (709)
T ss_pred HHHHHhcCCC--------------------------CCCHHHHHHHHHHhCc-----HHH---HHhcccccccccccCCC
Confidence 9999998521 1111122222222211 111 23578889999999776
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
+||||||||++|||||+++|+||+||||||+||+.++..|.+.|.++.+ |+|+|+..|++ .+.+.||+|++|++|
T Consensus 609 -~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl--~ti~~adrIiVl~~G 683 (709)
T COG2274 609 -NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL--STIRSADRIIVLDQG 683 (709)
T ss_pred -CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc--hHhhhccEEEEccCC
Confidence 6999999999999999999999999999999999999999999999864 68888876655 688999999999999
Q ss_pred eEEEecChHHHHH
Q 000555 405 HLVYQGPRAEVLE 417 (1427)
Q Consensus 405 ~iv~~G~~~~~~~ 417 (1427)
+|+.+|+++|+++
T Consensus 684 kiv~~gs~~ell~ 696 (709)
T COG2274 684 KIVEQGSHEELLA 696 (709)
T ss_pred ceeccCCHHHHHH
Confidence 9999999999986
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=340.59 Aligned_cols=215 Identities=27% Similarity=0.371 Sum_probs=178.4
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 5678876552 2458999999999999999999999999999999999865 357999999987643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000555 908 S---T-FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKE-------VSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976 (1427)
Q Consensus 908 ~---~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 976 (1427)
. . .++.++|++|++.+++.+||+|++.+......... ....+..+.++++++.+++.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 2 1 23468999999999999999999988754321110 012334556889999999988777765
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 479999999999999999999999999999999999999999999998877899999999986 56778999999986 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 77777764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=359.76 Aligned_cols=214 Identities=28% Similarity=0.412 Sum_probs=184.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 378899987652 2468999999999999999999999999999999999865 3579999999876
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 906 EQ-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
.. ...++.+|||+|+..++|.+||+||+.|....+ ..+.++..++++++++.++|.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 223467999999999999999999999876533 2234455667899999999998888776 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999985 57788999999986 68888887
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 5
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=336.61 Aligned_cols=221 Identities=38% Similarity=0.645 Sum_probs=180.8
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC-CceeEEEEEECCccC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT-GGYIEGDIKISGYPK 905 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~~~ 905 (1427)
+.|+|+++.++... ..+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 56888887663210 13679999999999999999999999999999999999754 123589999999876
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEE-VMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
....+++.++|++|++.+++.+||+||+.+......+.....+.....+++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544566789999999999999999999998765432222122222334555 888899987776655 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999985468889999999986 6777654
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=320.12 Aligned_cols=206 Identities=25% Similarity=0.388 Sum_probs=171.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
.++|+|||+++++||+++|+||||+||||||++|+|..++. +|+|.++|++++... .++-++||||....|+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 57999999999999999999999999999999999999875 899999999997654 35679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhC-Ccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLG-LDLCSETVVGN 321 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~ 321 (1427)
+||+|||..++..+..... .....|.+.+.+= |..-.+..
T Consensus 93 LTVeENL~~g~~~~~~~~~------------------------------------~~~~~e~v~~lFP~Lker~~~~--- 133 (237)
T COG0410 93 LTVEENLLLGAYARRDKEA------------------------------------QERDLEEVYELFPRLKERRNQR--- 133 (237)
T ss_pred CcHHHHHhhhhhccccccc------------------------------------ccccHHHHHHHChhHHHHhcCc---
Confidence 9999999987543211000 0001233333332 22222222
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
...|||||||-++|||||+++|++|+|||||.||-|.-..+|++.|+++.++.+.||++ +.|......+.+|+.++|
T Consensus 134 --aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 134 --AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGYVL 210 (237)
T ss_pred --ccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEEEE
Confidence 33599999999999999999999999999999999999999999999998776778888 589999999999999999
Q ss_pred eCCeEEEecChHHHHH
Q 000555 402 SEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~~ 417 (1427)
.+|+|++.|+.+++..
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999999864
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=339.61 Aligned_cols=217 Identities=29% Similarity=0.407 Sum_probs=180.2
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 368899987663 2468999999999999999999999999999999999865 3579999999875
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhccCC-cCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000555 906 EQS-TFARISGYVEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 906 ~~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 983 (1427)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+..+.++++++.++|.+..+..+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 2245799999999999999999999886543211 00122334456788999999987777765 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999764 899999999975 46778999999986 6788777
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
+.
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 64
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=336.98 Aligned_cols=208 Identities=31% Similarity=0.432 Sum_probs=172.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 3578887765310 011469999999999999999999999999999999999865 35799999998754
Q ss_pred ccc-------ccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000555 907 QST-------FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGL 979 (1427)
Q Consensus 907 ~~~-------~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 979 (1427)
... .++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.++|.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 311 2457999999999999999999999876443 1223334556889999999988777665 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 980 SgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ +.+|++++|++|
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~G 216 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRDG 216 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeCC
Confidence 99999999999999999999999999999999999999999999976 5899999999976 34 489999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=356.12 Aligned_cols=202 Identities=23% Similarity=0.315 Sum_probs=177.3
Q ss_pred cceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcc---cc----cceEEEEccCCCC
Q 000555 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS---TF----ARISGYVEQNDIH 923 (1427)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~Q~~~~ 923 (1427)
.+.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .+ ++.+|||+|++.+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4568999999999999999999999999999999999876 3589999999886532 22 5689999999999
Q ss_pred CCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000555 924 SPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMD 1003 (1427)
Q Consensus 924 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlD 1003 (1427)
+|++||+||+.|...+. ..+.++..+++.++++.++|++..+... ..|||||||||+|||||+.+|+|||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999886543 2345566778999999999988888775 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1004 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|||++||+.++..+++.++++.++ |+|||++||++. ++...+|++++|++ |+++..|+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 999999999999999999998754 899999999975 57888999999986 688888864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=339.10 Aligned_cols=213 Identities=27% Similarity=0.390 Sum_probs=179.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 35778877652 2468999999999999999999999999999999999865 35799999998754
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 907 QS---T-FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 907 ~~---~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
.. . .++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+++.+..++.+ ..||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 31 1 2356899999999999999999998764332 1223344556789999999988777765 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999998877899999999986 57888999999986 6787777
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
+.
T Consensus 216 ~~ 217 (232)
T cd03218 216 TP 217 (232)
T ss_pred CH
Confidence 64
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=357.28 Aligned_cols=211 Identities=25% Similarity=0.396 Sum_probs=177.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc-cceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-QRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1427)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++..... ++.++||+|++.+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999999886 9999999998865332 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.|+.+......+ ..+. +...+++++++.+||++.. ++.+.
T Consensus 92 ~eni~~~~~~~~~~~~-------~~~~------------------------~~~~~~~~~l~~~~L~~~~-----~~~~~ 135 (353)
T PRK10851 92 FDNIAFGLTVLPRRER-------PNAA------------------------AIKAKVTQLLEMVQLAHLA-----DRYPA 135 (353)
T ss_pred HHHHHhhhhhcccccC-------CCHH------------------------HHHHHHHHHHHHcCCchhh-----hCChh
Confidence 9999997653210000 0000 0112467889999997544 45567
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+|||||+.+|+++||||||+|||+.++.++.+.|+++.++.+.|+|++ +|...++..++|+|++|++|+
T Consensus 136 ~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~v-THd~~ea~~~~Dri~vl~~G~ 214 (353)
T PRK10851 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFV-THDQEEAMEVADRVVVMSQGN 214 (353)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999987778899886 456678999999999999999
Q ss_pred EEEecChHHHHH
Q 000555 406 LVYQGPRAEVLE 417 (1427)
Q Consensus 406 iv~~G~~~~~~~ 417 (1427)
+++.|+++++..
T Consensus 215 i~~~g~~~~i~~ 226 (353)
T PRK10851 215 IEQAGTPDQVWR 226 (353)
T ss_pred EEEEcCHHHHHh
Confidence 999999998853
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=334.32 Aligned_cols=206 Identities=28% Similarity=0.388 Sum_probs=174.1
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 57888887652 12468999999999999999999999999999999999865 35799999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 QS------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
.. .+++.++|++|++.+++.+|++||+.+....+ ........+.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 24567999999999999999999998875432 1233344567889999999987766665 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++...+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999985 567789999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=332.98 Aligned_cols=207 Identities=28% Similarity=0.416 Sum_probs=174.6
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCccc
Confidence 35778876552 2469999999999999999999999999999999999765 35899999998754
Q ss_pred c-ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 907 Q-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
. ...++.++|++|++.+++.+||+||+.+....+. . ..+.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 3 2345679999999999999999999988654321 1 1345788999999988777765 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. .+.+.+|++++|++ |++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998877899999999975 46678999999986 5776654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=324.82 Aligned_cols=221 Identities=26% Similarity=0.384 Sum_probs=185.8
Q ss_pred ccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc----cceEEEEccCCCCC
Q 000555 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV----QRTSAYISQTDNHI 240 (1427)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~ 240 (1427)
...++++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+ +.-++--+|....|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 3568999999999999999999999999999999999999987 9999999999977654 34578899999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
++|||.||+..+...+........ .....+.+ .+...+...+|+.+||.+.+|+..|
T Consensus 92 ~~lTVlENv~va~~~~~~~~~~l~-~~~~~~~e----------------------~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLSGLLG-RPRARKEE----------------------REARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhhhhhc-cccchhhH----------------------HHHHHHHHHHHHHcCCchhhcchhh
Confidence 999999999998664421000000 00000000 1112346789999999999988877
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
+ ||+|||||+.|||||+.+|++|+||||.+||.+.-+.++.+.|+++.++.|.|+++ +-|.+.-++++||||+|
T Consensus 149 ~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~till-IEHdM~~Vm~l~dri~V 222 (250)
T COG0411 149 N-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILL-IEHDMKLVMGLADRIVV 222 (250)
T ss_pred c-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EEeccHHHhhhccEEEe
Confidence 5 99999999999999999999999999999999999999999999998777789988 57889999999999999
Q ss_pred EeCCeEEEecChHHHHH
Q 000555 401 LSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~~ 417 (1427)
|+.|+++.+|+++++.+
T Consensus 223 l~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 223 LNYGEVIAEGTPEEVRN 239 (250)
T ss_pred ccCCcCcccCCHHHHhc
Confidence 99999999999999864
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=349.68 Aligned_cols=212 Identities=24% Similarity=0.396 Sum_probs=183.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++++. ++.+|+|+||++++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888887652 3468999999999999999999999999999999999865 35899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 907 Q--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 907 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
. ...++.+||++|++.+++.+||.||+.+.+.++ ..+.++..+.++++++.++|.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 234567999999999999999999999876553 2233444566889999999998888876 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 799999999986 57888999999986 688888875
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=337.75 Aligned_cols=214 Identities=26% Similarity=0.332 Sum_probs=176.1
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCC-----CCceeEEEEEEC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK-----TGGYIEGDIKIS 901 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~-----~~~~~~G~i~i~ 901 (1427)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.. . +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 35778876542 246899999999999999999999999999999999976 3 458999999
Q ss_pred CccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000555 902 GYPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976 (1427)
Q Consensus 902 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 976 (1427)
|.+... ..+++.++|++|++.++ .+||+||+.+....+. ....++..+.++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987532 23456799999998887 7999999988754321 11222234667899999999876665431 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|+++ .+.+.+|++++|++ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 589999999999999999999999999999999999999999999999876 99999999976 56778999999986 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
++++.|+.
T Consensus 217 ~i~~~g~~ 224 (227)
T cd03260 217 RLVEFGPT 224 (227)
T ss_pred EEEEecCc
Confidence 78887764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=358.02 Aligned_cols=207 Identities=23% Similarity=0.345 Sum_probs=178.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV 245 (1427)
..+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.+|||+|++.+|+.+||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999886 999999999886533 35789999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
.||+.|+.+.++.. +. +...+++++++.+||.+. .++.+.
T Consensus 109 ~eNi~~~l~~~~~~-----------~~------------------------~~~~~v~~~l~~l~L~~~-----~~~~~~ 148 (377)
T PRK11607 109 EQNIAFGLKQDKLP-----------KA------------------------EIASRVNEMLGLVHMQEF-----AKRKPH 148 (377)
T ss_pred HHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHHcCCchh-----hcCChh
Confidence 99999986543210 00 011246788999999753 455667
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
+|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.++.+.|+|+++ |...++..++|+|++|++|+
T Consensus 149 ~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vT-Hd~~ea~~laDri~vl~~G~ 227 (377)
T PRK11607 149 QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVT-HDQEEAMTMAGRIAIMNRGK 227 (377)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc-CCHHHHHHhCCEEEEEeCCE
Confidence 89999999999999999999999999999999999999999999998877789999864 55678899999999999999
Q ss_pred EEEecChHHHHH
Q 000555 406 LVYQGPRAEVLE 417 (1427)
Q Consensus 406 iv~~G~~~~~~~ 417 (1427)
++..|+++++..
T Consensus 228 i~~~g~~~~~~~ 239 (377)
T PRK11607 228 FVQIGEPEEIYE 239 (377)
T ss_pred EEEEcCHHHHHh
Confidence 999999998853
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=356.94 Aligned_cols=200 Identities=30% Similarity=0.432 Sum_probs=169.7
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~lT 244 (1427)
++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||++.++. .++++++||+|++.+++ .|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 7999999999999999999999999999999999999986 99999999988765 47899999999996555 59
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCC------ccccccc
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGL------DLCSETV 318 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~~t~ 318 (1427)
+||||.++.... + ++ .+.++++..|| +...||.
T Consensus 411 ireNi~l~~~~~-------------s----------~e------------------~i~~al~~a~l~~~v~~p~GLdt~ 449 (559)
T COG4988 411 IRENILLARPDA-------------S----------DE------------------EIIAALDQAGLLEFVPKPDGLDTV 449 (559)
T ss_pred HHHHhhccCCcC-------------C----------HH------------------HHHHHHHHhcHHHhhcCCCcccch
Confidence 999999862110 0 01 12223333333 4567899
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
+|+.+ ++|||||+|||++|||++.+++++++||||++||.+++..|.+.|.++++ ++|++++.|++ +...-+|+|
T Consensus 450 ige~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I 524 (559)
T COG4988 450 IGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRI 524 (559)
T ss_pred hccCC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEE
Confidence 99876 47999999999999999999999999999999999999999999999876 58988876664 677899999
Q ss_pred EEEeCCeEEEecChHHHHH
Q 000555 399 LLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~~ 417 (1427)
++|++|+++++|.++++.+
T Consensus 525 ~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 525 VVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEecCCceeccCCHHHHhh
Confidence 9999999999999999864
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=358.72 Aligned_cols=218 Identities=27% Similarity=0.367 Sum_probs=184.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378899987652 3569999999999999999999999999999999999865 3579999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCc-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSK-EVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.+|||+|+..+++.+||+|++.++....... .....+..+.++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 345678999999999989999999998864211100 1012334567899999999998888876 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
|||||+.|||||+++|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999986 57788999999986 678888
Q ss_pred cCCC
Q 000555 1062 GKLG 1065 (1427)
Q Consensus 1062 g~~~ 1065 (1427)
|+..
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 8753
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=337.88 Aligned_cols=217 Identities=27% Similarity=0.363 Sum_probs=180.2
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++.. .+..++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5778887765310 011369999999999999999999999999999999999865 35799999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 QS------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
.. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 23567999999999999999999998865433 1233444566889999999988777765 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1059 (1427)
||||||++||++|+.+|++++|||||+|||+.+...+.+.|++++++ |+|||+++|+++ .+.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999975 46778999999986 6788
Q ss_pred EccCC
Q 000555 1060 YGGKL 1064 (1427)
Q Consensus 1060 ~~g~~ 1064 (1427)
..|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 87764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=352.47 Aligned_cols=206 Identities=27% Similarity=0.359 Sum_probs=175.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~lT 244 (1427)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.+||++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 46999999999999999999999999999999999999986 99999999987542 34578999999998999999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.|....++... . +....++++++.+||++..++.+
T Consensus 131 v~e~l~~~~~~~~~~~-----------~------------------------~~~~~~~~ll~~~~L~~~~~~~~----- 170 (340)
T PRK13536 131 VRENLLVFGRYFGMST-----------R------------------------EIEAVIPSLLEFARLESKADARV----- 170 (340)
T ss_pred HHHHHHHHHHHcCCCH-----------H------------------------HHHHHHHHHHHHcCCchhhCCCh-----
Confidence 9999997654432100 0 00112566888999986655554
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
++|||||||||+||+||+++|++++|||||+|||+.++.++.+.|+++.+ .|+|||++. |...++.++||+|++|++|
T Consensus 171 ~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisS-H~l~e~~~~~d~i~il~~G 248 (340)
T PRK13536 171 SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTT-HFMEEAERLCDRLCVLEAG 248 (340)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEC-CCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999865 489999974 5667899999999999999
Q ss_pred eEEEecChHHHHH
Q 000555 405 HLVYQGPRAEVLE 417 (1427)
Q Consensus 405 ~iv~~G~~~~~~~ 417 (1427)
+++++|+++++..
T Consensus 249 ~i~~~g~~~~l~~ 261 (340)
T PRK13536 249 RKIAEGRPHALID 261 (340)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999999864
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=333.08 Aligned_cols=205 Identities=27% Similarity=0.371 Sum_probs=173.0
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 5678877652 12468999999999999999999999999999999999765 357999999987542
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 908 S------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 908 ~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
. .+++.++|++|++.+++.+|++||+.+....+ ....++..+.++++++.+++.+..++.+ .+|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 24567999999999999999999998875432 1233444567889999999988777765 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
|||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++. .+.+.+|++++|++|
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998777999999999975 466679999999864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=358.01 Aligned_cols=207 Identities=24% Similarity=0.406 Sum_probs=176.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV 245 (1427)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 899999999886432 24679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.|+.+..+.. +. +...+++++++.+||++..+ +.+.
T Consensus 93 ~eni~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~lgL~~~~~-----~~~~ 132 (369)
T PRK11000 93 AENMSFGLKLAGAK-----------KE------------------------EINQRVNQVAEVLQLAHLLD-----RKPK 132 (369)
T ss_pred HHHHHhHHhhcCCC-----------HH------------------------HHHHHHHHHHHHcCChhhhc-----CChh
Confidence 99999976543210 00 00123677899999975444 4456
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.+.|+|++.| ...++.++||+|++|++|+
T Consensus 133 ~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTH-d~~~~~~~~d~i~vl~~G~ 211 (369)
T PRK11000 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGR 211 (369)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeC-CHHHHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999987766889998754 4568889999999999999
Q ss_pred EEEecChHHHHH
Q 000555 406 LVYQGPRAEVLE 417 (1427)
Q Consensus 406 iv~~G~~~~~~~ 417 (1427)
++..|+++++..
T Consensus 212 i~~~g~~~~i~~ 223 (369)
T PRK11000 212 VAQVGKPLELYH 223 (369)
T ss_pred EEEEcCHHHHHh
Confidence 999999998753
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=315.82 Aligned_cols=209 Identities=22% Similarity=0.390 Sum_probs=180.4
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc----cceEEEEccCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV----QRTSAYISQTDNHIP 241 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~ 241 (1427)
++++++|||+.+++||+++++|||||||||.+.++.|+.+|+ +|+|.++|.+++...+ +.-+||+||++..|-
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 467999999999999999999999999999999999999987 9999999999987643 234899999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
.+||+|||.-..+.+... ..+. +.+.+.+.+|+.+.|.++.+..
T Consensus 93 ~LtV~dNi~~vlE~~~~d---------~~~~------------------------~~~~~l~~LL~ef~i~hlr~~~--- 136 (243)
T COG1137 93 KLTVEDNIMAVLEIREKD---------LKKA------------------------ERKEELDALLEEFHITHLRDSK--- 136 (243)
T ss_pred cCcHHHHHHHHHhhhhcc---------hhHH------------------------HHHHHHHHHHHHhchHHHhcCc---
Confidence 999999998876654310 0000 0112367899999998876654
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
...||||||+|+-|||||+.+|+.++||||++|+||-+..+|.+.++.+.+ .|.-|+++ .|...|+++.|||.+++
T Consensus 137 --a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLIT-DHNVREtL~i~dRaYIi 212 (243)
T COG1137 137 --AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLIT-DHNVRETLDICDRAYII 212 (243)
T ss_pred --ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEc-cccHHHHHhhhheEEEE
Confidence 346999999999999999999999999999999999999999999999865 58899985 67788999999999999
Q ss_pred eCCeEEEecChHHHHH
Q 000555 402 SEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~~ 417 (1427)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999999864
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=354.08 Aligned_cols=214 Identities=27% Similarity=0.451 Sum_probs=178.9
Q ss_pred CCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEEC
Q 000555 822 FQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS 901 (1427)
Q Consensus 822 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~ 901 (1427)
..++.++.+|++|.++. .+++++|+|++++||+.+||+|+||||||||+++|+|..++ .+|+|.+|
T Consensus 316 ~~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vn 381 (559)
T COG4988 316 EPPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVN 381 (559)
T ss_pred CCCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEEC
Confidence 34667778899987742 23789999999999999999999999999999999998764 58999999
Q ss_pred CccCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc------cccccc
Q 000555 902 GYPKE---QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL------RDALVG 972 (1427)
Q Consensus 902 g~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~------~~~~vg 972 (1427)
|.+.. ...++++++||+|++.+++ -|++||+.++.. +.+++ .+.++++..+|.+. .|+.+|
T Consensus 382 g~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~-----~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ig 451 (559)
T COG4988 382 GIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARP-----DASDE----EIIAALDQAGLLEFVPKPDGLDTVIG 451 (559)
T ss_pred CccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCC-----cCCHH----HHHHHHHHhcHHHhhcCCCcccchhc
Confidence 98754 4568899999999998886 599999987631 22333 35667777666544 456666
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEE
Q 000555 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1052 (1427)
Q Consensus 973 ~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1052 (1427)
. ++++|||||+|||++||||+++++++++||||++||.+|++.|++.|.++++ ++||+++|||+. ....+|+|++|
T Consensus 452 e-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vl 527 (559)
T COG4988 452 E-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVL 527 (559)
T ss_pred c-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEe
Confidence 4 4578999999999999999999999999999999999999999999999986 599999999964 56678999999
Q ss_pred ecCcEEEEccCC
Q 000555 1053 KRGGRVIYGGKL 1064 (1427)
Q Consensus 1053 ~~gg~~~~~g~~ 1064 (1427)
++ |+++..|..
T Consensus 528 d~-G~l~~~g~~ 538 (559)
T COG4988 528 DN-GRLVEQGTH 538 (559)
T ss_pred cC-CceeccCCH
Confidence 86 688888865
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=339.91 Aligned_cols=216 Identities=26% Similarity=0.322 Sum_probs=176.5
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 5678876542 11468999999999999999999999999999999999765 357999999987543
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHhccC-----CcCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000555 908 S------TFARISGYVEQNDIHSPQVTVEESLWFSANLRL-----SKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976 (1427)
Q Consensus 908 ~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 976 (1427)
. ..++.++|++|++.+++.+||+||+.+...... ..........+.++++++.++|.+..+..+
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA----- 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----
Confidence 1 245679999999999999999999987532110 001112233456788999999987766654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 589999999999999999999999999999999999999999999998764 899999999986 46778999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 678887764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=333.89 Aligned_cols=214 Identities=27% Similarity=0.411 Sum_probs=178.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++. .++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 357788765521 12469999999999999999999999999999999999865 35899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 907 Q--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 907 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
. ..+++.++|++|++.+++..|++||+.+..... ..+..+..+.++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 234567999999999999999999998865433 1233334456889999999988777765 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 599999999986 46678999999986 678777764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=348.51 Aligned_cols=229 Identities=23% Similarity=0.337 Sum_probs=185.9
Q ss_pred cCCCCCccEEEEeeeEEEEEEecCCCcCCchhHHhHHHHHHHhhhccccCCccccceeeeCeeEEEeCCeEEEEEcCCCC
Q 000555 112 VGIEVPKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPAS 191 (1427)
Q Consensus 112 ~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 191 (1427)
..+..|.-.++|+|++.+-. ++++||+++||+|++||-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46677777899999886521 234599999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHhhh
Q 000555 192 GKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYIND 268 (1427)
Q Consensus 192 GKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 268 (1427)
||||++|+|.+..+ . +|+|.+||+++.+. ..|+.||||||+..+| +.||.+||.||..- ...+ +
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~s-----as~e---e 456 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNPS-----ASDE---E 456 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCCC-----cCHH---H
Confidence 99999999999997 3 89999999998765 3678999999987555 56999999996311 0001 1
Q ss_pred hhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEE
Q 000555 269 LNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTL 348 (1427)
Q Consensus 269 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~il 348 (1427)
.-+..|..+ .++++ ..|++.++|.||+++.. |||||||||++|||++.+|+|+
T Consensus 457 V~e~~k~a~------------------------~hd~i--~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 457 VVEACKRAG------------------------LHDVI--SRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred HHHHHHHcC------------------------cHHHH--HhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeE
Confidence 111111111 11122 24778899999999876 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHHH
Q 000555 349 FMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 349 lLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 417 (1427)
++|||||+||+.|..++++.+.+.. .++|+|+..|.. .+..-||+|++|++|++...|+++|++.
T Consensus 510 ~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 510 LLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999998843 489999977654 6789999999999999999999999975
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=345.35 Aligned_cols=218 Identities=25% Similarity=0.362 Sum_probs=180.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++||++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 78899988763210 012469999999999999999999999999999999999865 35899999998764
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 000555 907 Q-----STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD--SLRDALVGFPGSSG 978 (1427)
Q Consensus 907 ~-----~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~ 978 (1427)
. ..+++.+|||+|++. .+...||+||+.|..... ..+.++..+.++++++.++|. +..++.+ +.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 3 134578999999863 334579999999865432 234555667789999999997 5566654 58
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 979 LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999975 46678999999986 68
Q ss_pred EEEccCC
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~g~~ 1064 (1427)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 8888865
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=345.96 Aligned_cols=220 Identities=25% Similarity=0.400 Sum_probs=178.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-----cccceEEEEccCCC-CC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDN-HI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~-~~ 240 (1427)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999886 99999999988642 23568999999863 44
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
...||+||+.|+....+.. +. +...+++++++.+||+. ....
T Consensus 97 ~~~tv~e~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~gL~~---~~~~ 138 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS-----------EE------------------------EIENRVKRAMNIVGLDY---EDYK 138 (287)
T ss_pred ccccHHHHHHhHHHHCCCC-----------HH------------------------HHHHHHHHHHHHcCCCc---hhhc
Confidence 5679999999875432210 00 01123677899999961 0123
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
++.++.|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|++++++.|+|||+++|+ ..++.++||+|++
T Consensus 139 ~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~drv~~ 217 (287)
T PRK13637 139 DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS-MEDVAKLADRIIV 217 (287)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEE
Confidence 455678999999999999999999999999999999999999999999999977668999997554 5677889999999
Q ss_pred EeCCeEEEecChHHHHH---HHHhcCCCCCC
Q 000555 401 LSEGHLVYQGPRAEVLE---FFESLGFQLPP 428 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 428 (1427)
|++|+++++|+++++.+ .+...|+..|.
T Consensus 218 l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 218 MNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 99999999999998753 23445665554
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=332.09 Aligned_cols=191 Identities=30% Similarity=0.423 Sum_probs=162.6
Q ss_pred ceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcccccceEEEEccCCC-CCCCCCHH
Q 000555 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDI-HSPQVTVE 930 (1427)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-~~~~lTv~ 930 (1427)
+.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+......++.+||++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 468999999999999999999999999999999999765 358999999987644445567999999974 34567999
Q ss_pred HHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000555 931 ESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010 (1427)
Q Consensus 931 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD 1010 (1427)
||+.+..... .. ..+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL-----DA--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc-----Cc--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998764321 11 1245788999999988877765 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEE
Q 000555 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058 (1427)
Q Consensus 1011 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1058 (1427)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++| ++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G-~i 204 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANG-AI 204 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC-EE
Confidence 99999999999999777999999999975 466789999999864 54
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=336.98 Aligned_cols=214 Identities=25% Similarity=0.384 Sum_probs=180.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 57888887652 2468999999999999999999999999999999999765 35799999998764
Q ss_pred c-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 907 Q-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 907 ~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
. ..+++.++|++|++.+++.+||+||+.+..... ......+..+.+.++++.++|.+..+..+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 234567999999999999999999998764211 11233444567889999999987777665 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
|||||++||++|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999998877999999999986 46678999999986 688888
Q ss_pred cCC
Q 000555 1062 GKL 1064 (1427)
Q Consensus 1062 g~~ 1064 (1427)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 774
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=333.41 Aligned_cols=217 Identities=27% Similarity=0.367 Sum_probs=179.1
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 37899998876310 012469999999999999999999999999999999999865 3589999999876
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000555 906 EQST------F-ARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSG 978 (1427)
Q Consensus 906 ~~~~------~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 978 (1427)
.... . ++.++|++|++.+++.+|++||+.+..... ....++..+.++++++.++|.+..+..+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4321 2 256999999998999999999999865432 1233444567889999999988777665 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 979 LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +|+|||+++|+++ ....+|++++|++ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999975 3445689999986 68
Q ss_pred EEEccCC
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~g~~ 1064 (1427)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 8888775
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=353.35 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=175.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999876 999999999876432 246799999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+.+||+||+.++....+.. ..+ ...+++++++.+||++..++
T Consensus 95 ~~~tv~eni~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~gL~~~~~~--- 136 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTP-----------KAE------------------------IKARVTELLELVGLSDKADR--- 136 (343)
T ss_pred CCCcHHHHHHHHHHHcCCC-----------HHH------------------------HHHHHHHHHHHcCCchhhhC---
Confidence 9999999999976543220 000 01235678999999765444
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
.++.|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.++.|+|+|++.| ...++.++||+|++
T Consensus 137 --~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH-~~~~i~~~~d~v~~ 213 (343)
T PRK11153 137 --YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH-EMDVVKRICDRVAV 213 (343)
T ss_pred --ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 456799999999999999999999999999999999999999999999997766889998754 45678889999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 214 IDAGRLVEQGTVSEVF 229 (343)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998875
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=333.77 Aligned_cols=205 Identities=26% Similarity=0.371 Sum_probs=171.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~lT 244 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999875 99999999876432 23467999999998899999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.+..+..+.. .. +....++++++.+||++..++ .+
T Consensus 90 v~~~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~~-----~~ 129 (220)
T cd03265 90 GWENLYIHARLYGVP-----------GA------------------------ERRERIDELLDFVGLLEAADR-----LV 129 (220)
T ss_pred HHHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHHcCCHHHhhC-----Ch
Confidence 999999875433210 00 001235678999999764444 44
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++. |...++.+++|++++|++|
T Consensus 130 ~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~t-H~~~~~~~~~d~i~~l~~G 208 (220)
T cd03265 130 KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT-HYMEEAEQLCDRVAIIDHG 208 (220)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEeCC
Confidence 569999999999999999999999999999999999999999999998775588988865 5556788899999999999
Q ss_pred eEEEecChHHH
Q 000555 405 HLVYQGPRAEV 415 (1427)
Q Consensus 405 ~iv~~G~~~~~ 415 (1427)
+++..|+++++
T Consensus 209 ~i~~~~~~~~~ 219 (220)
T cd03265 209 RIIAEGTPEEL 219 (220)
T ss_pred EEEEeCChHHc
Confidence 99999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=338.65 Aligned_cols=214 Identities=26% Similarity=0.352 Sum_probs=179.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 68899987652 2358999999999999999999999999999999999865 35799999998653
Q ss_pred c-----------ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000555 907 Q-----------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG 975 (1427)
Q Consensus 907 ~-----------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 975 (1427)
. ..+++.++|++|++.+++..||+||+.+...... ....++..+.++++++.++|.+..+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1235679999999999999999999987542111 1233444566889999999987776654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 589999999999999999999999999999999999999999999999877999999999975 46678999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 678887764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=343.22 Aligned_cols=203 Identities=24% Similarity=0.304 Sum_probs=172.4
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcc---c----ccceEEEEccCCC
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS---T----FARISGYVEQNDI 922 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~ 922 (1427)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 35679999999999999999999999999999999999865 3579999999875421 1 1357999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000555 923 HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFM 1002 (1427)
Q Consensus 923 ~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illl 1002 (1427)
+++.+||+||+.+..... .....+..+.++++++.++|.+..++.+ ..||||||||++||+||+.+|++|+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998875432 1223344566889999999988777776 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1003 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1003 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999975 46778999999986 677777764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=337.36 Aligned_cols=213 Identities=29% Similarity=0.410 Sum_probs=177.9
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++. .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 56788765521 1458999999999999999999999999999999999865 357999999987542
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHH
Q 000555 908 ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS--LRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 908 ---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSgG 982 (1427)
..+++.++|++|++.+++.+||+||+.+...++ ..+.++..+.++++++.+++.+ ..+..+ +.||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHH
Confidence 234567899999999999999999998865432 1233444566889999999985 556554 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999764 899999999975 56788999999986 677777
Q ss_pred cCC
Q 000555 1062 GKL 1064 (1427)
Q Consensus 1062 g~~ 1064 (1427)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=309.35 Aligned_cols=216 Identities=26% Similarity=0.398 Sum_probs=182.6
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
|+.+|++|++. .+++|++||++++|||++||+|||||||||||++|+|...+ .+|++.++|.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 57789998773 56799999999999999999999999999999999997663 4799999999875
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000555 907 Q---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 983 (1427)
. ....+..+.+||+..+....||+|-+.++..-... .-...+..+.++++|...++.+++.... ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 4 34567779999999887778999999987532211 1122244556889999999999887765 5899999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 984 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 984 rqrl~ia~aL~~------~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
||||.+||.|++ ++++||||||||+||......++++.|+++++|..|+++.||.+. ...++|+|++|.+ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 456999999999999999999999999999999999999999985 6678999999986 78
Q ss_pred EEEccCCC
Q 000555 1058 VIYGGKLG 1065 (1427)
Q Consensus 1058 ~~~~g~~~ 1065 (1427)
++..|++.
T Consensus 219 v~a~g~p~ 226 (259)
T COG4559 219 VIASGSPQ 226 (259)
T ss_pred EeecCCHH
Confidence 89888764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=337.44 Aligned_cols=212 Identities=29% Similarity=0.401 Sum_probs=178.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 57888887652 2468999999999999999999999999999999999865 35799999998764
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000555 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKR 986 (1427)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqr 986 (1427)
. ..+.+||++|++.+++.+||+||+.+....+ .....+..+.++++++.++|.+..+..+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345899999999999999999998764332 1233444567889999999987777654 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEec-CcEEEEccCC
Q 000555 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYGGKL 1064 (1427)
Q Consensus 987 l~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~g~~ 1064 (1427)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+...+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 57788999999985 5788887654
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=333.75 Aligned_cols=211 Identities=30% Similarity=0.438 Sum_probs=174.2
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++++|+|+||++++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 35778876542 2468999999999999999999999999999999999865 35799999998754
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCH
Q 000555 907 QS---T-FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV-ELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 907 ~~---~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. . .++.++|++|++.+++.+|++||+.+...... ..+..+.++++++.+ ++.+..++.+ ..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCH
Confidence 32 1 24569999999999999999999988754321 122334566778877 4766666654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++...+|++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999877899999999975 46788999999986 678877
Q ss_pred cCC
Q 000555 1062 GKL 1064 (1427)
Q Consensus 1062 g~~ 1064 (1427)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=331.90 Aligned_cols=200 Identities=27% Similarity=0.422 Sum_probs=166.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV 245 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999875 999999999875432 34679999999888889999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.++....+.. ..+ ....++++++.+||++..+. .+.
T Consensus 90 ~~~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~l~~~~~~-----~~~ 129 (213)
T cd03259 90 AENIAFGLKLRGVP-----------KAE------------------------IRARVRELLELVGLEGLLNR-----YPH 129 (213)
T ss_pred HHHHHhHHHHcCCC-----------HHH------------------------HHHHHHHHHHHcCChhhhhc-----Chh
Confidence 99998864332110 000 01135678889999754444 345
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|||++.| ...++.++||++++|++|+
T Consensus 130 ~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH-~~~~~~~~~d~v~~l~~G~ 208 (213)
T cd03259 130 ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH-DQEEALALADRIAVMNEGR 208 (213)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec-CHHHHHHhcCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999987656889988654 4567889999999999999
Q ss_pred EEEec
Q 000555 406 LVYQG 410 (1427)
Q Consensus 406 iv~~G 410 (1427)
+++.|
T Consensus 209 i~~~g 213 (213)
T cd03259 209 IVQVG 213 (213)
T ss_pred EEecC
Confidence 98765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=360.00 Aligned_cols=301 Identities=25% Similarity=0.308 Sum_probs=229.3
Q ss_pred hhhhhcccCCCCCCCCcceeeecccccch-hhhHHHHHHhhhcCccCHHHHHHHHH-----HHHhhcCC---CC------
Q 000555 52 GNFALLKTTTPRNGGEAKTETIDVRKLNR-SRRELVVSKALATNDQDNYKLLSAIK-----ERLDRVGI---EV------ 116 (1427)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~------ 116 (1427)
..-.+++++..+.|.++..++||++=... +||..+|.+|..+-.++.+++++.-+ ..+..+.. ..
T Consensus 192 qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~ 271 (539)
T COG1123 192 QILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPR 271 (539)
T ss_pred HHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHhhCCCccccccccccc
Confidence 33444444443445667778899998887 99999999999999999999995432 11121110 00
Q ss_pred -----CccEEEEeeeEEEEEEecCCCcCCchhHHhHHHHHHHhhhccccCCccccceeeeCeeEEEeCCeEEEEEcCCCC
Q 000555 117 -----PKVEVRFQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPAS 191 (1427)
Q Consensus 117 -----p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 191 (1427)
...-++.+||+..-.... ....+.+....+++||||.+++||+++|+|+|||
T Consensus 272 ~~~~~~~~ll~V~~l~k~y~~~~-----------------------~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGs 328 (539)
T COG1123 272 RGPLRAEPLLSVRNLSKRYGSRK-----------------------GLFVRERGEVKAVDDVSFDLREGETLGLVGESGS 328 (539)
T ss_pred ccccccCceeEeeeeeeeecccc-----------------------ccccccccceeeeeeeeeEecCCCEEEEECCCCC
Confidence 111233444443211100 0011113456899999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCceeEEEECCeec--Ccc---cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCcchhh
Q 000555 192 GKSTLLLALAGKLDSSLKKSGNITYNGYKL--DEF---HVQRTSAYISQTD--NHIPELTVRETFDFAARWQGANEGFAA 264 (1427)
Q Consensus 192 GKSTLL~~L~G~~~~~~~~~G~V~~~G~~~--~~~---~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~~~~~~~~~~~~~ 264 (1427)
|||||.++|+|+.+|+ +|+|.++|.+. +.. ..++.+-+|+|++ .+.|.+||+++|...........
T Consensus 329 GKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~---- 401 (539)
T COG1123 329 GKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS---- 401 (539)
T ss_pred CHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc----
Confidence 9999999999999986 99999999872 211 2345677788875 58899999999988765433200
Q ss_pred HhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChHHhHHHHHHHHHhCC
Q 000555 265 YINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344 (1427)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~ 344 (1427)
. .+.+.+++++++..||+. ...++++.+|||||||||+|||||+.+
T Consensus 402 ------~------------------------~~~~~rv~~ll~~VgL~~----~~l~ryP~elSGGQrQRvaIARALa~~ 447 (539)
T COG1123 402 ------G------------------------AERRARVAELLELVGLPP----EFLDRYPHELSGGQRQRVAIARALALE 447 (539)
T ss_pred ------h------------------------HHHHHHHHHHHHHcCCCH----HHHhcCchhcCcchhHHHHHHHHHhcC
Confidence 0 011235788999999983 367788999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHHH
Q 000555 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 345 p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 417 (1427)
|+++++|||||+||+.++.+|.++|+++.++.|.|.++ |.|+..-+...||||++|++|+||+.||.+++.+
T Consensus 448 P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lf-ISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 448 PKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF-ISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEE-EeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999998 5788899999999999999999999999998853
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=339.02 Aligned_cols=217 Identities=24% Similarity=0.302 Sum_probs=176.7
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.+. .++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 56788876542 12458999999999999999999999999999999999865 35799999998754
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHhccC-----CcCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000555 907 Q------STFARISGYVEQNDIHSPQVTVEESLWFSANLRL-----SKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG 975 (1427)
Q Consensus 907 ~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 975 (1427)
. ..+++.+||++|++.+++.+||+||+.+...... .......+..++++++++.+++.+..+..+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 2 1245679999999999999999999976421100 001112233466888999999987777654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
..||||||||++||+||+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ .+.+.+|++++|++
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 579999999999999999999999999999999999999999999998764 899999999986 46678999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 677777765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=352.05 Aligned_cols=211 Identities=26% Similarity=0.405 Sum_probs=175.4
Q ss_pred CceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCc
Q 000555 824 PLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 903 (1427)
Q Consensus 824 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 903 (1427)
+..|+|+||++++. +++++|+++||+|++||.+||+|+|||||||++++|.+..+ .+|+|.|||.
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 34699999998774 34569999999999999999999999999999999999765 4799999999
Q ss_pred cCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCC-------cccccccccC
Q 000555 904 PKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-------DSLRDALVGF 973 (1427)
Q Consensus 904 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~ 973 (1427)
++++ ..+|+.+||||||..+| +.||.+|+.|+. ...++++ |-++.+..++ .+-.+|.+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhHhh
Confidence 8654 56789999999988776 569999999873 2233333 4444455444 4456677886
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
.| ..|||||||||+||||++++|+|+++|||||.||++|+..+++.+++. ..++|+|++.|+. ++...||+|++|+
T Consensus 484 rG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLD 559 (591)
T ss_pred cc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEE
Confidence 55 469999999999999999999999999999999999999999999984 4589999999995 5788999999999
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |++...|+.
T Consensus 560 n-G~v~e~gth 569 (591)
T KOG0057|consen 560 N-GTVKEYGTH 569 (591)
T ss_pred C-CeeEEeccH
Confidence 7 566666764
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=309.51 Aligned_cols=208 Identities=27% Similarity=0.436 Sum_probs=172.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~l 243 (1427)
+.+|++||++++|||+++|+||||||||||||+|+|++.|+ +|+|++||++++... ..+.-+.++|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 46999999999999999999999999999999999999986 999999999987654 356779999998777778
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||+|-+.++..-.+. +. .| .++....+.+|...++.+.+ .+.
T Consensus 91 tv~eVV~mGr~p~~~--g~----------------~~---------------~e~~~i~~~ala~~d~~~la-----~R~ 132 (259)
T COG4559 91 TVQEVVQMGRIPHRS--GR----------------EP---------------EEDERIAAQALAATDLSGLA-----GRD 132 (259)
T ss_pred EHHHHHHhccccccc--CC----------------Cc---------------hhhHHHHHHHHHHcChhhhh-----ccc
Confidence 999999998543211 00 00 01122366778888887543 344
Q ss_pred CCCCChHHhHHHHHHHHHhC------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCc
Q 000555 324 IRGVSGGQKKRVTTGEMIVG------PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~------~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~ 397 (1427)
.+.|||||||||.+||.|+. ++++||||||||+||.....++++..|+++++ |..|++ +.|+.+-...+||+
T Consensus 133 y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~-VLHDLNLAA~YaDr 210 (259)
T COG4559 133 YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLA-VLHDLNLAAQYADR 210 (259)
T ss_pred hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEE-EEccchHHHHhhhe
Confidence 56799999999999999974 45699999999999999999999999999986 566666 56788999999999
Q ss_pred EEEEeCCeEEEecChHHHHH
Q 000555 398 LLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 398 vilL~~G~iv~~G~~~~~~~ 417 (1427)
|++|++|+++..|++++++.
T Consensus 211 ivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 211 IVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eeeeeCCeEeecCCHHHhcC
Confidence 99999999999999999873
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=339.45 Aligned_cols=215 Identities=20% Similarity=0.308 Sum_probs=180.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478999987652 2468999999999999999999999999999999999865 3579999999875
Q ss_pred Ccc------cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000555 906 EQS------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGL 979 (1427)
Q Consensus 906 ~~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 979 (1427)
... ..++.++|++|+..+++.+||.||+.+..... ...+..+..+.+.++++.++|.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREH--TQLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 13567999999999999999999998764321 11233334456788999999988777765 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEE
Q 000555 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058 (1427)
Q Consensus 980 SgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1058 (1427)
|||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999975 57778999999986 688
Q ss_pred EEccCC
Q 000555 1059 IYGGKL 1064 (1427)
Q Consensus 1059 ~~~g~~ 1064 (1427)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 888764
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=315.93 Aligned_cols=213 Identities=27% Similarity=0.390 Sum_probs=178.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|++..| ++.++|+|||+++++||+++|+|||||||||||++|+|..+. .+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 5778876443 357899999999999999999999999999999999998763 4799999999876
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCH
Q 000555 907 QS----TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE-LDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 907 ~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..++-++||||....||.+||+|||..++..+.. ++.....++++.+.+- |.+.++...| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 42 3456789999999999999999999988655422 1111222677777773 6666777665 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
||||-++|||||+.+|++|+|||||.||-|.-.++|.+.|+++.++ |.||+++-++.. ...+.+|+.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 779999988865 46788999999985 79999
Q ss_pred ccCCC
Q 000555 1061 GGKLG 1065 (1427)
Q Consensus 1061 ~g~~~ 1065 (1427)
.|+..
T Consensus 218 ~G~~~ 222 (237)
T COG0410 218 SGTAA 222 (237)
T ss_pred ecCHH
Confidence 99853
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=340.63 Aligned_cols=215 Identities=27% Similarity=0.356 Sum_probs=180.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ .+..+|+|+|++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378999987663 12358999999999999999999999999999999999765 3579999999876
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ...++.+||++|++. .++..||.||+.|..... ..+.++..+.++++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223567999999863 455689999998864321 2334444566889999999988877765 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 46678999999986 678888
Q ss_pred cCC
Q 000555 1062 GKL 1064 (1427)
Q Consensus 1062 g~~ 1064 (1427)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 875
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=338.55 Aligned_cols=201 Identities=20% Similarity=0.223 Sum_probs=151.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.+++.+|++.++ ++..+++.+++..++.-..++++|+||+||||+++++.|...+ ..|-+.+.+
T Consensus 362 ~l~i~~V~f~y~-----------p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~--- 425 (582)
T KOG0062|consen 362 NLRISYVAFEYT-----------PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP--- 425 (582)
T ss_pred eeEEEeeeccCC-----------CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc---
Confidence 578888876543 2223689999999999999999999999999999999986542 456555543
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHH
Q 000555 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL-RDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqr 984 (1427)
+.+++|-.|..+-+-.+.|.+ +.+-...+.. .++ +.+++-+..+||+.- +... ..+||||||
T Consensus 426 -----r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG--~~~----ee~r~hl~~~Gl~g~la~~s-----i~~LSGGQK 488 (582)
T KOG0062|consen 426 -----RLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPG--KTE----EEIRRHLGSFGLSGELALQS-----IASLSGGQK 488 (582)
T ss_pred -----cceecchhHhhhhHHHHHhHH-HHHHHHhCCC--CCH----HHHHHHHHhcCCCchhhhcc-----ccccCCcch
Confidence 456899999765444445433 3333334322 222 335677888999743 2222 358999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
-||++|.....+|.+|+|||||+.||-.+-..+.+.|++. +..||+|+|+-+ -+-..|+.+.+.++|...-+.|.
T Consensus 489 srvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 489 SRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred hHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeecc
Confidence 9999999999999999999999999999999999999876 568999999965 36667999999998766655554
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=328.88 Aligned_cols=209 Identities=31% Similarity=0.465 Sum_probs=174.6
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|+++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccc
Confidence 35778876552 236899999999999 999999999999999999999765 35899999998754
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 907 Q--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 907 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
. ..+++.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.++|.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 234567999999999999999999998865443 1223334556889999999988777765 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|||+++|++. .+.+.+|++++|++ |+++..|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999876 599999999975 46678999999986 5666543
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.90 Aligned_cols=206 Identities=27% Similarity=0.373 Sum_probs=173.3
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+++|++++|||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 35778877652 2458999999999999999999999999999999999865 35799999998763
Q ss_pred c-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 907 Q-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 907 ~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
. ..+++.++|++|++.+++.+|++||+.+..... ...+.++..+.++++++.+++.+..+..+ ..|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 138 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYP-----AQLSG 138 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCH
Confidence 2 234567999999999999999999998764211 12233344566888999999988777765 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 139 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999877899999999975 566789999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=343.46 Aligned_cols=218 Identities=26% Similarity=0.338 Sum_probs=179.3
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|++++++... ....++|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 68999998774210 012469999999999999999999999999999999999865 35799999998763
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000555 907 Q-------STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSS 977 (1427)
Q Consensus 907 ~-------~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 977 (1427)
. ..+++.+|||+|++. .+...||+||+.|+.... ..+.++..+.++++++.++|. +..++.+ .
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 1 234567999999862 233579999999875322 234444556789999999996 5566654 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 89999999999999999999999999999999999999999999999764 899999999986 57788999999985 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 88888875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=330.12 Aligned_cols=208 Identities=25% Similarity=0.291 Sum_probs=174.6
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 57888887652 12468999999999999999999999999999999999865 35899999998754
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 QS------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
.. .+++.++|++|++.+++..|++||+.+..... ..+.++..+.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 14567999999998889999999998865432 2233444556788999999987777655 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1058 (1427)
||||||++||+||+.+|++|+|||||+|||+.+...+.+.|+++.++|.|||+++|+++ ++...+|++++|++| ++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G-~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDG-HL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC-EE
Confidence 99999999999999999999999999999999999999999998777899999999986 466778999999864 54
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=339.99 Aligned_cols=207 Identities=26% Similarity=0.364 Sum_probs=173.3
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-------ccceEEEEccCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-------VQRTSAYISQTDN 238 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~ 238 (1427)
.+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 457999999999999999999999999999999999999875 899999999875421 1357999999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
+++.+||+||+.++....+.. ..+ ....++++++.+||++..++.
T Consensus 113 ~~~~~tv~e~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVP-----------RAE------------------------REERAAEALELVGLEGWEHKY 157 (269)
T ss_pred cCCCCcHHHHHHHHHHhcCCC-----------HHH------------------------HHHHHHHHHHHcCCHhHhhCC
Confidence 888999999999875432210 000 011356788999997654444
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
++.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|++++++.|+|+|++.|+ ..++.++||++
T Consensus 158 -----~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~-~~~~~~~~d~v 231 (269)
T cd03294 158 -----PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD-LDEALRLGDRI 231 (269)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcCEE
Confidence 456999999999999999999999999999999999999999999999876568899987554 56778999999
Q ss_pred EEEeCCeEEEecChHHHH
Q 000555 399 LLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~ 416 (1427)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988775
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=343.96 Aligned_cols=218 Identities=25% Similarity=0.353 Sum_probs=179.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++... .....+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 78999998774210 0123589999999999999999999999999999999998653 4799999886531
Q ss_pred ---------------------------cccccceEEEEccCC-CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHH
Q 000555 907 ---------------------------QSTFARISGYVEQND-IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVM 958 (1427)
Q Consensus 907 ---------------------------~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l 958 (1427)
...+++.+|||+|++ ..+...||+|++.|+.... ..+.++..+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 3344579999999875432 234555567789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000555 959 RLVELD-SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037 (1427)
Q Consensus 959 ~~l~L~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1037 (1427)
+.+||. +..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5666654 5899999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1038 PSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1038 ~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
+. .+.+.+|++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 75 47788999999986 688888875
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=318.32 Aligned_cols=207 Identities=27% Similarity=0.392 Sum_probs=179.8
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCccc----ccceEEEEccCCCCCC
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST----FARISGYVEQNDIHSP 925 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~~~~~~ 925 (1427)
+...+++|||+++++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++.... .+.-++.-+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 45679999999999999999999999999999999999876 35799999999875432 2445788899999999
Q ss_pred CCCHHHHHHHHHhccC--------Cc-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000555 926 QVTVEESLWFSANLRL--------SK-EVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVAN 996 (1427)
Q Consensus 926 ~lTv~e~l~~~~~l~~--------~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~ 996 (1427)
.+||.||+..++..+. +. ....++..+++.++++.+||.+.+|...| +||+||||||.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998755331 11 11345556778999999999999999885 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCC
Q 000555 997 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 997 p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~ 1065 (1427)
|++|+||||.+||.+.....+.+.|+++.+ .|.||+++-|+.+. ++.+||||+||+. |+++..|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHH
Confidence 999999999999999999999999999987 46999999999984 8999999999986 6888888863
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=345.67 Aligned_cols=218 Identities=26% Similarity=0.378 Sum_probs=179.2
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 489999998774210 012459999999999999999999999999999999999865 3579999999765
Q ss_pred Cc-------------------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc
Q 000555 906 EQ-------------------STFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD 964 (1427)
Q Consensus 906 ~~-------------------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~ 964 (1427)
.. ..+++.+|||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13467899999986 4555 59999998864321 234444556788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000555 965 -SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1043 (1427)
Q Consensus 965 -~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1043 (1427)
+..+..+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ .+.
T Consensus 167 ~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 4555543 589999999999999999999999999999999999999999999998777999999999975 466
Q ss_pred HhhceEEEEecCcEEEEccCC
Q 000555 1044 EAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1044 ~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 78999999986 688888875
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=344.55 Aligned_cols=218 Identities=22% Similarity=0.333 Sum_probs=176.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-------cccceEEEEccCCC-
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-------HVQRTSAYISQTDN- 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~~- 238 (1427)
.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 46999999999999999999999999999999999999876 89999999987421 23467999999852
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCc-ccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD-LCSET 317 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t 317 (1427)
.+...||+||+.|+.+..+.. .. +...+++++++.+||. ...
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~gL~~~~~-- 139 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS-----------EE------------------------DAKQKAREMIELVGLPEELL-- 139 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHHCCCChhhh--
Confidence 344579999999875433210 00 0012367789999996 333
Q ss_pred ccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCc
Q 000555 318 VVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 318 ~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~ 397 (1427)
++.++.|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++.++.|.|||++. |...++.++||+
T Consensus 140 ---~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiit-Hd~~~~~~~~dr 215 (290)
T PRK13634 140 ---ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVT-HSMEDAARYADQ 215 (290)
T ss_pred ---hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCE
Confidence 3455679999999999999999999999999999999999999999999999776689999875 455678899999
Q ss_pred EEEEeCCeEEEecChHHHHH---HHHhcCCCCCC
Q 000555 398 LLLLSEGHLVYQGPRAEVLE---FFESLGFQLPP 428 (1427)
Q Consensus 398 vilL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 428 (1427)
|++|++|++++.|+++++.+ .+...+..+|.
T Consensus 216 v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 216 IVVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 99999999999999988752 34445555444
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=334.42 Aligned_cols=210 Identities=25% Similarity=0.398 Sum_probs=171.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV 245 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 46999999999999999999999999999999999999875 999999999875432 24579999999988888999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.++....+.. .. +..+ .....++.+++.+||++..+ +.+.
T Consensus 92 ~e~l~~~~~~~~~~-~~-----------------~~~~-------------~~~~~~~~~l~~~~l~~~~~-----~~~~ 135 (239)
T cd03296 92 FDNVAFGLRVKPRS-ER-----------------PPEA-------------EIRAKVHELLKLVQLDWLAD-----RYPA 135 (239)
T ss_pred HHHHhhhhhhcccc-cc-----------------CCHH-------------HHHHHHHHHHHHcCChhhhh-----cChh
Confidence 99999865432110 00 0000 00113567889999965443 3455
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ ..++.++||++++|++|+
T Consensus 136 ~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-~~~~~~~~d~i~~l~~G~ 214 (239)
T cd03296 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD-QEEALEVADRVVVMNKGR 214 (239)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCe
Confidence 7999999999999999999999999999999999999999999999876558899987655 466788999999999999
Q ss_pred EEEecChHHHH
Q 000555 406 LVYQGPRAEVL 416 (1427)
Q Consensus 406 iv~~G~~~~~~ 416 (1427)
+++.|+++++.
T Consensus 215 i~~~~~~~~~~ 225 (239)
T cd03296 215 IEQVGTPDEVY 225 (239)
T ss_pred EEEecCHHHHh
Confidence 99999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=331.53 Aligned_cols=212 Identities=29% Similarity=0.441 Sum_probs=176.6
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 56788877652 2468999999999999999999999999999999999865 35799999998754
Q ss_pred cc--cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 907 QS--TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 907 ~~--~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
.. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.++|.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 21 22357899999998889999999998765432 2233344556888999999988777765 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++. + ..+|++++|++ |+++..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999875 58999999999863 4 45999999986 67777776
Q ss_pred C
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=341.38 Aligned_cols=217 Identities=26% Similarity=0.360 Sum_probs=179.4
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++.. ....+.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 6889999877411 0012358999999999999999999999999999999999865 35799999998763
Q ss_pred c-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000555 907 Q-------STFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGS 976 (1427)
Q Consensus 907 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 976 (1427)
. ..+++.+|||+|++ .+++ .||.|++.|..... ..+.++..+++.++++.++|. +..+..+
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP----- 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----
Confidence 1 23466799999986 4444 69999999875322 234455667789999999996 4556554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 589999999999999999999999999999999999999999999999877999999999975 46778999999986 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
++++.|+.
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 88888875
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=342.94 Aligned_cols=226 Identities=25% Similarity=0.345 Sum_probs=181.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-------cccceEEEEccCC-C
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-------HVQRTSAYISQTD-N 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~-~ 238 (1427)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+++.. ..++.++||+|++ .
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 95 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPES 95 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcch
Confidence 35999999999999999999999999999999999999886 99999999987421 2356799999986 2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
.+...||.||+.|+.+..+.. +. + ...++.++++.+||.+.
T Consensus 96 ~l~~~tv~~~l~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~~L~~~---- 136 (288)
T PRK13643 96 QLFEETVLKDVAFGPQNFGIP-----------KE----------K--------------AEKIAAEKLEMVGLADE---- 136 (288)
T ss_pred hcccchHHHHHHhHHHHcCCC-----------HH----------H--------------HHHHHHHHHHHcCCChh----
Confidence 444579999999976543220 00 0 01235678889999521
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
..++.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++| ...++.++||+|
T Consensus 137 ~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtH-d~~~~~~~~dri 214 (288)
T PRK13643 137 FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTH-LMDDVADYADYV 214 (288)
T ss_pred hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec-CHHHHHHhCCEE
Confidence 12345678999999999999999999999999999999999999999999999865 4889999755 456788999999
Q ss_pred EEEeCCeEEEecChHHHH---HHHHhcCCCCCCCCChHHHH
Q 000555 399 LLLSEGHLVYQGPRAEVL---EFFESLGFQLPPRKGVADFL 436 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~ad~l 436 (1427)
++|++|+++++|+++++. +.++..|+.+|.....++.+
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 215 YLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 999999999999999875 34566788777655444444
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=331.20 Aligned_cols=217 Identities=25% Similarity=0.311 Sum_probs=171.6
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.+... .....+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5788888765310 001368999999999999999999999999999999999865 35799999998764
Q ss_pred c------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000555 907 Q------STFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSS 977 (1427)
Q Consensus 907 ~------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 977 (1427)
. ..+++.++|++|++ .+++.+||+||+.+....... ....+.....++++++.+++. +..+..+ .
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRYP-----H 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCCc-----h
Confidence 3 23456799999998 466789999999876543211 111111122235788999985 4556554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+...+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999975 46668999999986 5
Q ss_pred EEEEcc
Q 000555 1057 RVIYGG 1062 (1427)
Q Consensus 1057 ~~~~~g 1062 (1427)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 666543
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=344.75 Aligned_cols=206 Identities=29% Similarity=0.378 Sum_probs=172.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~lT 244 (1427)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 45999999999999999999999999999999999999876 99999999987432 23567999999998888999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.+.....+.. .. + ....++.+++.+||++..++.+
T Consensus 94 v~e~l~~~~~~~~~~-----------~~----------~--------------~~~~~~~ll~~~~l~~~~~~~~----- 133 (303)
T TIGR01288 94 VRENLLVFGRYFGMS-----------TR----------E--------------IEAVIPSLLEFARLESKADVRV----- 133 (303)
T ss_pred HHHHHHHHHHHcCCC-----------HH----------H--------------HHHHHHHHHHHCCChhHhcCch-----
Confidence 999998754332210 00 0 0112456788999986555544
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
+.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++. |...++.++||+|++|++|
T Consensus 134 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~s-H~~~~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 134 ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTT-HFMEEAERLCDRLCVLESG 211 (303)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEC-CCHHHHHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999865 488999875 4556888999999999999
Q ss_pred eEEEecChHHHHH
Q 000555 405 HLVYQGPRAEVLE 417 (1427)
Q Consensus 405 ~iv~~G~~~~~~~ 417 (1427)
++++.|+++++..
T Consensus 212 ~i~~~g~~~~~~~ 224 (303)
T TIGR01288 212 RKIAEGRPHALID 224 (303)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=329.10 Aligned_cols=193 Identities=29% Similarity=0.434 Sum_probs=163.4
Q ss_pred ceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc---ccccceEEEEccCCC-CCCCC
Q 000555 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQNDI-HSPQV 927 (1427)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 927 (1427)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 468999999999999999999999999999999999765 357999999987542 234567999999974 46779
Q ss_pred CHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000555 928 TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1427)
Q Consensus 928 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTs 1007 (1427)
|++||+.+..... .....+..+.++++++.++|.+..+..+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765332 1233344456788999999987777665 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 1008 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 1008 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999975 466679999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=328.50 Aligned_cols=210 Identities=26% Similarity=0.358 Sum_probs=172.1
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++.. ...+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5678888765311 112469999999999999999999999999999999999865 35799999998754
Q ss_pred cc---c---cc-ceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000555 907 QS---T---FA-RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGL 979 (1427)
Q Consensus 907 ~~---~---~~-~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 979 (1427)
.. . ++ +.++|++|++.+++.+||+||+.+....+ .....+..+.+.++++.+++.+..+..+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 31 1 22 56999999998999999999998865432 1222333456788999999987777665 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEE
Q 000555 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058 (1427)
Q Consensus 980 SgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1058 (1427)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 99999999999999999999999999999999999999999999876 4899999999975 34 55799999986 454
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=341.77 Aligned_cols=217 Identities=25% Similarity=0.354 Sum_probs=177.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCC-CCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTD-NHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~-~~~~~ 242 (1427)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35999999999999999999999999999999999999886 99999999988542 2356799999987 36778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
.||+||+.|+.+..+.. .. +...+++++++.+||++..+ +
T Consensus 97 ~tv~eni~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~gL~~~~~-----~ 136 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP-----------HE------------------------EMKERVNEALELVGMQDFKE-----R 136 (279)
T ss_pred ccHHHHHHhhHHhCCCC-----------HH------------------------HHHHHHHHHHHHCCCHhHhh-----C
Confidence 89999999875432210 00 00123677899999975444 3
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|+|++.|+. .++ ..||+|++|+
T Consensus 137 ~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~ 214 (279)
T PRK13650 137 EPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMK 214 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEE
Confidence 45679999999999999999999999999999999999999999999999776689999976664 455 5899999999
Q ss_pred CCeEEEecChHHHHH---HHHhcCCCCCC
Q 000555 403 EGHLVYQGPRAEVLE---FFESLGFQLPP 428 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~---~f~~~G~~~p~ 428 (1427)
+|+++..|+++++.. .++..|+..|.
T Consensus 215 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 215 NGQVESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred CCEEEEECCHHHHHcChHHHHHcCCCCcH
Confidence 999999999988763 34455655443
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.64 Aligned_cols=198 Identities=28% Similarity=0.429 Sum_probs=163.3
Q ss_pred ceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcccccceEEEEccCCCCC--CCCCH
Q 000555 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHS--PQVTV 929 (1427)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv 929 (1427)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 458999999999999999999999999999999999765 35799999998653 3456799999998663 34899
Q ss_pred HHHHHHHHhccCC-cCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000555 930 EESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008 (1427)
Q Consensus 930 ~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsg 1008 (1427)
+||+.+....... .....++..+.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00112233456889999999987777665 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 1009 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 1009 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ | +++.
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~ 212 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVAS 212 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-Eeec
Confidence 9999999999999998877899999999976 46778999999975 5 4443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=341.04 Aligned_cols=218 Identities=22% Similarity=0.351 Sum_probs=179.2
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|... +..|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378999998774210 012469999999999999999999999999999999999865 3579999999876
Q ss_pred Cc-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000555 906 EQ-------STFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPG 975 (1427)
Q Consensus 906 ~~-------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 975 (1427)
.. ..+++.+|||+|++ .+++ .||+||+.|..... ..+.++..+.++++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 143 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP---- 143 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc----
Confidence 32 13567899999986 3554 59999999864321 234455566788999999996 5666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++
T Consensus 144 -~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 144 -FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 58999999999999999999999999999999999999999999999975 4899999999975 46778999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|++++.|+.
T Consensus 222 -G~i~~~g~~ 230 (286)
T PRK13646 222 -GSIVSQTSP 230 (286)
T ss_pred -CEEEEECCH
Confidence 678888764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=329.51 Aligned_cols=201 Identities=27% Similarity=0.378 Sum_probs=168.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVR 246 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999875 9999999988753 356799999998888889999
Q ss_pred HHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCC
Q 000555 247 ETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG 326 (1427)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 326 (1427)
||+.++....+.. ..+ ....++.+++.+||++..+. .+..
T Consensus 92 e~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~ 131 (220)
T cd03293 92 DNVALGLELQGVP-----------KAE------------------------ARERAEELLELVGLSGFENA-----YPHQ 131 (220)
T ss_pred HHHHHHHHHcCCC-----------HHH------------------------HHHHHHHHHHHcCChhhhhC-----Cccc
Confidence 9999875433210 000 01135678899999754443 3457
Q ss_pred CChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe--CC
Q 000555 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS--EG 404 (1427)
Q Consensus 327 LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~--~G 404 (1427)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|+ ..++.++||++++|+ +|
T Consensus 132 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~-~~~~~~~~d~i~~l~~~~G 210 (220)
T cd03293 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD-IDEAVFLADRVVVLSARPG 210 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC-HHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999876568899987555 457788999999999 79
Q ss_pred eEEEecChH
Q 000555 405 HLVYQGPRA 413 (1427)
Q Consensus 405 ~iv~~G~~~ 413 (1427)
+++..++.+
T Consensus 211 ~i~~~~~~~ 219 (220)
T cd03293 211 RIVAEVEVD 219 (220)
T ss_pred EEEEEEEec
Confidence 999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=334.41 Aligned_cols=206 Identities=22% Similarity=0.314 Sum_probs=175.5
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 489999988663 2458999999999999999999999999999999999865 3579999998765
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
. .+++.++|++|++.+++.+||+||+.+... . ...+.+.++++.++|.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 345679999999999999999999987421 0 12345788999999988777665 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .|+|||+++|+++ .+.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999976 46678999999986 678877764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=333.34 Aligned_cols=214 Identities=27% Similarity=0.384 Sum_probs=179.7
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67888887652 2468999999999999999999999999999999999865 35799999998764
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 907 QS----TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 907 ~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
.. ..++.++|++|++.+++.+||+||+.+...++. ..+.++....++++++.+++.+..+..+ +.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHH
Confidence 31 134679999999999999999999987643321 1233344567889999999987766654 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||||++||++|+.+|++|+|||||+|||+.+...+.+.++++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999975 57788999999986 6788877
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 65
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=333.39 Aligned_cols=214 Identities=26% Similarity=0.336 Sum_probs=176.7
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECCc
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 903 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 903 (1427)
++++|+++.++ +..+|+|+|++|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 57888887653 235899999999999999999999999999999999976531 12799999998
Q ss_pred cCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000555 904 PKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD----SLRDALVGFP 974 (1427)
Q Consensus 904 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 974 (1427)
+... ...++.++|++|++.+++ .|++||+.+....+. ..+..+..+.++++++.++|. +..+..+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 142 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA--- 142 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc---
Confidence 7642 234567999999998888 999999988754331 123344456788999999997 5555544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++
T Consensus 143 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 143 --LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 58999999999999999999999999999999999999999999999876 489999999975 46778999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 677777764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=332.61 Aligned_cols=205 Identities=27% Similarity=0.369 Sum_probs=172.2
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCCCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHIP 241 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~~ 241 (1427)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999875 899999999875421 2467999999998888
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
.+||+||+.++....+.. ..+ ....+++.++.+||++..+.
T Consensus 96 ~~t~~e~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~l~~~~~~---- 136 (233)
T cd03258 96 SRTVFENVALPLEIAGVP-----------KAE------------------------IEERVLELLELVGLEDKADA---- 136 (233)
T ss_pred CCcHHHHHHHHHHHcCCC-----------HHH------------------------HHHHHHHHHHHCCChhhhhc----
Confidence 999999998865432210 000 01135678899999754443
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ ..++.+++|++++|
T Consensus 137 -~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-~~~~~~~~d~i~~l 214 (233)
T cd03258 137 -YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE-MEVVKRICDRVAVM 214 (233)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 4457999999999999999999999999999999999999999999999876568899987655 56778899999999
Q ss_pred eCCeEEEecChHHHH
Q 000555 402 SEGHLVYQGPRAEVL 416 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~ 416 (1427)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (233)
T cd03258 215 EKGEVVEEGTVEEVF 229 (233)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=339.58 Aligned_cols=215 Identities=27% Similarity=0.393 Sum_probs=180.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ .++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 589999998763 12458999999999999999999999999999999999865 3589999999876
Q ss_pred Cc-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000555 906 EQ-----STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGL 979 (1427)
Q Consensus 906 ~~-----~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 979 (1427)
.. ..+++.+||++|++. .+...||+||+.+..... ..+.++..+.++++++.++|.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 31 235567999999873 334689999998864321 2344455567899999999998877765 589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEE
Q 000555 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058 (1427)
Q Consensus 980 SgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1058 (1427)
|||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ ++...+|++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 899999999975 46668999999986 678
Q ss_pred EEccCC
Q 000555 1059 IYGGKL 1064 (1427)
Q Consensus 1059 ~~~g~~ 1064 (1427)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 888875
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=333.02 Aligned_cols=215 Identities=26% Similarity=0.394 Sum_probs=172.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
.++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 46999999999999999999999999999999999999875 899999999876432 13569999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.++....... . ..+. . ..... ......++++++.+||++..+ +
T Consensus 90 ~tv~~~l~~~~~~~~~~-~---~~~~-------~-~~~~~-------------~~~~~~~~~~l~~~~l~~~~~-----~ 139 (236)
T cd03219 90 LTVLENVMVAAQARTGS-G---LLLA-------R-ARREE-------------REARERAEELLERVGLADLAD-----R 139 (236)
T ss_pred CCHHHHHHHHHhhcccc-c---cccc-------c-ccccH-------------HHHHHHHHHHHHHcCccchhh-----C
Confidence 99999999875432110 0 0000 0 00000 001123677889999975443 4
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|+ ..++.++||++++|+
T Consensus 140 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~-~~~~~~~~d~i~~l~ 217 (236)
T cd03219 140 PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHD-MDVVMSLADRVTVLD 217 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecC-HHHHHHhCCEEEEEe
Confidence 4567999999999999999999999999999999999999999999999876 58899887554 567788999999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|++++.|+++++.
T Consensus 218 ~G~i~~~~~~~~~~ 231 (236)
T cd03219 218 QGRVIAEGTPDEVR 231 (236)
T ss_pred CCEEEeecCHHHhc
Confidence 99999999988764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=351.14 Aligned_cols=207 Identities=22% Similarity=0.331 Sum_probs=175.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-------ccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-------VQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~~ 239 (1427)
..+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|++.+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 46899999999999999999999999999999999999886 999999999876432 13579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++.+||+||+.|+.+..+... .+ ...+++++++.+||++..
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~-----------~~------------------------~~~~~~e~L~~~gL~~~~---- 158 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA-----------EE------------------------RREKALDALRQVGLENYA---- 158 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH-----------HH------------------------HHHHHHHHHHHcCCChhh----
Confidence 999999999999765433200 00 011356789999997544
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
++.++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.++|+|++. |...++.+++|+|+
T Consensus 159 -~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivT-Hd~~~~~~~~Dri~ 236 (400)
T PRK10070 159 -HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS-HDLDEAMRIGDRIA 236 (400)
T ss_pred -hcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEE-CCHHHHHHhCCEEE
Confidence 3455679999999999999999999999999999999999999999999998766689999875 45678889999999
Q ss_pred EEeCCeEEEecChHHHHH
Q 000555 400 LLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~~ 417 (1427)
+|++|+++..|+++++..
T Consensus 237 vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 237 IMQNGEVVQVGTPDEILN 254 (400)
T ss_pred EEECCEEEecCCHHHHHh
Confidence 999999999999988753
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=334.56 Aligned_cols=214 Identities=22% Similarity=0.295 Sum_probs=179.1
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 378999987663 2468999999999999999999999999999999999865 3579999999865
Q ss_pred Cc----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHh-ccCCcCCCHHHHHHHHHHHHHHcCCcccc-
Q 000555 906 EQ----------------STFARISGYVEQNDIHSPQVTVEESLWFSAN-LRLSKEVSKNQRHEFVEEVMRLVELDSLR- 967 (1427)
Q Consensus 906 ~~----------------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~v~~~l~~l~L~~~~- 967 (1427)
.. ..+++.++|++|++.+++.+||+||+.+... .. .....+..+.+.++++.+++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1345679999999999999999999987532 21 123344556788999999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Q 000555 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047 (1427)
Q Consensus 968 ~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1047 (1427)
+..+ ..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ .+...+|
T Consensus 147 ~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 5443 589999999999999999999999999999999999999999999999877999999999975 4666799
Q ss_pred eEEEEecCcEEEEccCC
Q 000555 1048 ELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1048 ~v~~l~~gg~~~~~g~~ 1064 (1427)
++++|++ |++++.|+.
T Consensus 221 ~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999986 677787764
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=312.72 Aligned_cols=212 Identities=24% Similarity=0.426 Sum_probs=191.2
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
+++++|+-+. +++.+++|+||.++||++.|++|+|||||||.+++|.|... +.+|.|.++|.+.+
T Consensus 3 L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 5677775433 46789999999999999999999999999999999999876 35899999999886
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000555 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKR 986 (1427)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqr 986 (1427)
.. .+.+|||.|.+.-++|.+||.|.|.|-+.++ .++.++....++.+|+.+++.......| +.||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHH
Confidence 53 4567899999999999999999999999986 5677888888999999999999888877 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 987 l~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
+.+-.+++++|++++||||+|||||.+.+.+-+.+.++.+.|.|||+++|++. .+.++||++++|++ |+.+..|++
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 99999999999999999999999999999999999999999999999999986 68999999999986 677777876
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=342.77 Aligned_cols=229 Identities=21% Similarity=0.267 Sum_probs=183.8
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++..++................+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 489999987775321100000011235799999999999999999999999999999999998653 579999999876
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000555 906 EQS------TFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGS 976 (1427)
Q Consensus 906 ~~~------~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 976 (1427)
... .+++.++||+|++ .++|.+||.|++.+...... ...+.++..+.++++++.++|. +..+...
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p----- 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYP----- 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCc-----
Confidence 431 2456799999997 58899999999988654321 1234556667788999999994 3455544
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
..||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++||+++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 589999999999999999999999999999999999999999999999764 899999999976 46678999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 688888875
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=331.85 Aligned_cols=212 Identities=24% Similarity=0.344 Sum_probs=176.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478999987652 2468999999999999999999999999999999999865 3579999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 000555 906 EQS----TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV-ELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 906 ~~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LS 980 (1427)
... ..++.++|++|+..+++.+||.||+.+..... ..++..+.++++++.+ ++.+..+..+ ..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCC
Confidence 432 23567999999999999999999998764221 1222334567777777 4665555543 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999998877999999999975 57888999999986 68888
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 8875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=333.64 Aligned_cols=214 Identities=25% Similarity=0.335 Sum_probs=178.8
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 36788887652 2468999999999999999999999999999999999865 35799999998653
Q ss_pred c----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccccccc
Q 000555 907 Q----------------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970 (1427)
Q Consensus 907 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ 970 (1427)
. ..+++.++|++|++.+++..|+.||+.+..... ......+..+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 124567999999999999999999998753211 1123344456688999999998777765
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceE
Q 000555 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1049 (1427)
Q Consensus 971 vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v 1049 (1427)
. ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++...+|++
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4 579999999999999999999999999999999999999999999998764 899999999986 466789999
Q ss_pred EEEecCcEEEEccCC
Q 000555 1050 LLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1050 ~~l~~gg~~~~~g~~ 1064 (1427)
++|++ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 678887764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=342.51 Aligned_cols=205 Identities=25% Similarity=0.390 Sum_probs=174.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~lT 244 (1427)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.+||++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999876 99999999987542 23567999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.|.+++.+... . +...+++++++.+||++..+.. +
T Consensus 92 v~e~l~~~~~~~~~~~-----------~------------------------~~~~~~~~~l~~~gl~~~~~~~-----~ 131 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG-----------Q------------------------LLKQRVEEMIELVGLRPEQHKK-----I 131 (301)
T ss_pred HHHHHHHHHHHcCCCH-----------H------------------------HHHHHHHHHHHHCCCchHhcCc-----h
Confidence 9999998765543200 0 0011357789999998765544 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
+.|||||||||+||+||+++|++++|||||+|||+.++..+.+.|+++. + ++|||++. |..+++.++||+|++|++|
T Consensus 132 ~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~s-H~l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 132 GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILST-HIMQEVEAICDRVIIINKG 208 (301)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEc-CCHHHHHHhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999984 3 68988875 5567899999999999999
Q ss_pred eEEEecChHHHHH
Q 000555 405 HLVYQGPRAEVLE 417 (1427)
Q Consensus 405 ~iv~~G~~~~~~~ 417 (1427)
++++.|+.+++..
T Consensus 209 ~i~~~g~~~~~~~ 221 (301)
T TIGR03522 209 KIVADKKLDELSA 221 (301)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=326.91 Aligned_cols=200 Identities=25% Similarity=0.400 Sum_probs=167.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV 245 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++..||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 36999999999999999999999999999999999999875 999999999875432 23579999999888888999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.++.+..+.. ..+ ....++++++.+||++..+. .++
T Consensus 90 ~~~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~l~~~~~~-----~~~ 129 (213)
T cd03301 90 YDNIAFGLKLRKVP-----------KDE------------------------IDERVREVAELLQIEHLLDR-----KPK 129 (213)
T ss_pred HHHHHHHHHhcCCC-----------HHH------------------------HHHHHHHHHHHcCCHHHHhC-----Chh
Confidence 99998865432210 000 01135678889999765444 445
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ ..++.++||++++|++|+
T Consensus 130 ~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~-~~~~~~~~d~i~~l~~g~ 208 (213)
T cd03301 130 QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD-QVEAMTMADRIAVMNDGQ 208 (213)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCeEEEEECCE
Confidence 6999999999999999999999999999999999999999999999876568899987655 567888999999999999
Q ss_pred EEEec
Q 000555 406 LVYQG 410 (1427)
Q Consensus 406 iv~~G 410 (1427)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03301 209 IQQIG 213 (213)
T ss_pred EEecC
Confidence 99876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=330.88 Aligned_cols=205 Identities=23% Similarity=0.364 Sum_probs=170.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999999875 899999999875432 23569999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.+.....+.. .. .....++.+++.+||++..+ +
T Consensus 90 ~tv~~~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~-----~ 129 (232)
T cd03218 90 LTVEENILAVLEIRGLS-----------KK------------------------EREEKLEELLEEFHITHLRK-----S 129 (232)
T ss_pred CcHHHHHHHHHHhcCCC-----------HH------------------------HHHHHHHHHHHHcCChhhhh-----C
Confidence 99999998864322110 00 00113567888999975444 3
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++.|+ ..++.+++|++++|+
T Consensus 130 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~-~~~~~~~~d~i~~l~ 207 (232)
T cd03218 130 KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHN-VRETLSITDRAYIIY 207 (232)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEEE
Confidence 4557999999999999999999999999999999999999999999999875 48898887554 558889999999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|++++.|+.+++.
T Consensus 208 ~G~i~~~~~~~~~~ 221 (232)
T cd03218 208 EGKVLAEGTPEEIA 221 (232)
T ss_pred CCeEEEEeCHHHhh
Confidence 99999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=338.06 Aligned_cols=216 Identities=25% Similarity=0.347 Sum_probs=181.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++.. ..+.+|+|+|++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37899998876311 12458999999999999999999999999999999999865 3589999999876
Q ss_pred Cc---ccccceEEEEccCC-CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQND-IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.+||++|++ ..++..||+||+.|..... ..+.++..+.++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 23456799999997 3677889999998875322 2345555667899999999998777765 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||++||+||+.+|++|+|||||+|||+.+...+++.|++++++ |+|||+++|++. .+ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999975 34 57999999986 68888
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8775
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=325.98 Aligned_cols=208 Identities=25% Similarity=0.379 Sum_probs=176.0
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 5677776542 2468999999999999999999999999999999999865 358999999987643
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000555 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRL 987 (1427)
Q Consensus 908 ~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl 987 (1427)
.. .+.++|++|++.+++.+|++||+.+....+. .. .+.+.++++.+++++..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2568999999998999999999987654321 11 234778899999988777765 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCC
Q 000555 988 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 988 ~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~ 1065 (1427)
+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. .+.+.+|++++|++ |++++.|+..
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999999777899999999986 46778999999986 6888888763
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=331.39 Aligned_cols=219 Identities=22% Similarity=0.272 Sum_probs=175.1
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35788877652 24689999999999999999999999999999999997311135799999998754
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhccCC--c--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000555 907 QS---T-FARISGYVEQNDIHSPQVTVEESLWFSANLRLS--K--EVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSS 977 (1427)
Q Consensus 907 ~~---~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~--~--~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 977 (1427)
.. . .+..++|++|++.+++.+|++|++.+....... . ..+..+..+.++++++.++|. ...+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 1 223489999999999999999999876432211 0 112233345688999999997 45555442 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hceEEEEecCc
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRGG 1056 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~gg 1056 (1427)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 59999999999999999999999999999999999999999999999877899999999975 45555 799999986 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 78888764
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=347.32 Aligned_cols=209 Identities=23% Similarity=0.318 Sum_probs=175.6
Q ss_pred ccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCe----ecCcc---c---c-cceEEEE
Q 000555 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY----KLDEF---H---V-QRTSAYI 233 (1427)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~----~~~~~---~---~-~~~~~yv 233 (1427)
....+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+ ++... . . ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3567999999999999999999999999999999999999886 899999996 33221 1 1 2579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcc
Q 000555 234 SQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDL 313 (1427)
Q Consensus 234 ~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 313 (1427)
+|++.+++.+||+||+.|+....+... .+ ...+++++++.+||++
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~-----------~~------------------------~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE-----------AE------------------------RRKRVDEQLELVGLAQ 156 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH-----------HH------------------------HHHHHHHHHHHcCCch
Confidence 999999999999999999865433210 00 0123577899999976
Q ss_pred ccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHh
Q 000555 314 CSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFD 393 (1427)
Q Consensus 314 ~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~ 393 (1427)
..+. .+..|||||||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.++.++|+|++. |...++.+
T Consensus 157 ~~~~-----~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iT-Hdl~e~~~ 230 (382)
T TIGR03415 157 WADK-----KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVS-HDLDEALK 230 (382)
T ss_pred hhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHH
Confidence 5444 45569999999999999999999999999999999999999999999998776689999965 55678889
Q ss_pred hcCcEEEEeCCeEEEecChHHHHH
Q 000555 394 LFDDLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 394 ~~D~vilL~~G~iv~~G~~~~~~~ 417 (1427)
++|+|++|++|+++..|+++++..
T Consensus 231 l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 231 IGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred hCCEEEEEECCEEEEecCHHHHhh
Confidence 999999999999999999998853
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=328.93 Aligned_cols=195 Identities=25% Similarity=0.351 Sum_probs=162.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999875 899999999875321 346799999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+.+||+||+.++.+..+.. .. ....+++++++.+||++..+.
T Consensus 93 ~~~tv~e~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~~--- 134 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVP-----------PR------------------------DANERVSAALEKVGLEGKAHA--- 134 (216)
T ss_pred ccccHHHHHHHHHHhcCCC-----------HH------------------------HHHHHHHHHHHHcCChhhhhC---
Confidence 9999999999875432210 00 001235678899999754443
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++.| ..+++.++||++++
T Consensus 135 --~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH-~~~~~~~~~d~i~~ 210 (216)
T TIGR00960 135 --LPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATH-DINLVETYRHRTLT 210 (216)
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 4457999999999999999999999999999999999999999999999865 4889888654 45677789999999
Q ss_pred EeCCeE
Q 000555 401 LSEGHL 406 (1427)
Q Consensus 401 L~~G~i 406 (1427)
|++|++
T Consensus 211 l~~G~i 216 (216)
T TIGR00960 211 LSRGRL 216 (216)
T ss_pred EeCCcC
Confidence 999975
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=324.64 Aligned_cols=222 Identities=24% Similarity=0.368 Sum_probs=193.6
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-------ccceEEEEccCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-------VQRTSAYISQTDN 238 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~ 238 (1427)
...-++|+|++|+.||++.|||-||||||||+++|.++.+|+ +|+|+++|.++.... .++.++.|+|+-.
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 456789999999999999999999999999999999999986 999999999886532 3468999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
++|..||.||..|+.+.+|... .| .+.+..+.|+..||+...
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~-----------~e------------------------r~~~a~~~l~~VgL~~~~--- 158 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPK-----------AE------------------------REERALEALELVGLEGYA--- 158 (386)
T ss_pred cccchhHhhhhhcceeecCCCH-----------HH------------------------HHHHHHHHHHHcCchhhh---
Confidence 9999999999999999888632 11 122467789999998654
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
+.++++||||+||||.|||||+.+|+|||||||+|+|||--+.++.+.|.++.++.++|||+ ++|+.+|.+++.|||
T Consensus 159 --~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvF-itHDLdEAlriG~rI 235 (386)
T COG4175 159 --DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVF-ITHDLDEALRIGDRI 235 (386)
T ss_pred --hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEE-EecCHHHHHhccceE
Confidence 45667899999999999999999999999999999999999999999998888889999999 478899999999999
Q ss_pred EEEeCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHh
Q 000555 399 LLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEV 439 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 439 (1427)
.+|.+|+|+..|+++|++. .|...-+++|..++
T Consensus 236 aimkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EEecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 9999999999999999974 45655567777654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=338.46 Aligned_cols=219 Identities=26% Similarity=0.353 Sum_probs=179.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367899987663110 012468999999999999999999999999999999999865 3589999999875
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000555 906 EQ-------STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGS 976 (1427)
Q Consensus 906 ~~-------~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 976 (1427)
.. ...++.+||++|++. .+..+||+||+.+..... ....++..++++++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 124567999999962 333589999998765322 233445556789999999997 5667665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|.|||+++|+++ .+.+.+|++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 489999999999999999999999999999999999999999999999777999999999975 47788999999986 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 78888764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=330.59 Aligned_cols=214 Identities=26% Similarity=0.374 Sum_probs=178.8
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEec
Confidence 367889887653 2458999999999999999999999999999999999865 3579999999864
Q ss_pred C---------cccccceEEEEccCCCCCCCCCHHHHHHHH-HhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000555 906 E---------QSTFARISGYVEQNDIHSPQVTVEESLWFS-ANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG 975 (1427)
Q Consensus 906 ~---------~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 975 (1427)
. ....++.++|++|++.+++.+||.||+.+. .... .....+..+.+.++++.+|+.+..+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 012356799999999999999999999753 2221 1223334556889999999987777765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
..||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~- 216 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN- 216 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999998777999999999975 46677999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|++++.|+.
T Consensus 217 g~i~~~~~~ 225 (242)
T PRK11124 217 GHIVEQGDA 225 (242)
T ss_pred CEEEEeCCH
Confidence 688888764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=331.46 Aligned_cols=217 Identities=24% Similarity=0.284 Sum_probs=177.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 378899987652 245899999999999999999999999999999999976421 3589999999
Q ss_pred ccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccCCC
Q 000555 903 YPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGFPG 975 (1427)
Q Consensus 903 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~ 975 (1427)
.++.. ..+++.+||++|++.+++.+||+||+.+....+.. .....+..+.++++++.++|.+ ..++.+
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---- 144 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA---- 144 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc----
Confidence 87642 23456799999999888999999999886543211 1123344566888999999854 234433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. .+.+.+|++++|++
T Consensus 145 -~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 145 -GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 58999999999999999999999999999999999999999999999864 899999999986 46778999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|++...|+.
T Consensus 221 G~i~~~g~~ 229 (250)
T PRK14247 221 GQIVEWGPT 229 (250)
T ss_pred CeEEEECCH
Confidence 678887764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=332.16 Aligned_cols=214 Identities=27% Similarity=0.403 Sum_probs=171.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999875 899999999875432 346799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+.+||+||+.++...... ...... +..+ ......++.+++.+||.+..+
T Consensus 91 ~~~tv~~~l~~~~~~~~~--~~~~~~----------~~~~---------------~~~~~~~~~~l~~~~l~~~~~---- 139 (241)
T cd03256 91 ERLSVLENVLSGRLGRRS--TWRSLF----------GLFP---------------KEEKQRALAALERVGLLDKAY---- 139 (241)
T ss_pred ccCcHHHHHHhhhcccch--hhhhhc----------ccCc---------------HHHHHHHHHHHHHcCChhhhC----
Confidence 999999999875321100 000000 0000 000123567889999975433
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++++.|+|+|++.|+ ..++.++||++++
T Consensus 140 -~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~-~~~~~~~~d~v~~ 217 (241)
T cd03256 140 -QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ-VDLAREYADRIVG 217 (241)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEE
Confidence 34567999999999999999999999999999999999999999999999876568899987554 5678889999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|++++.|+++++.
T Consensus 218 l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 218 LKDGRIVFDGPPAELT 233 (241)
T ss_pred EECCEEEeecCHHHhh
Confidence 9999999999998764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=329.22 Aligned_cols=201 Identities=21% Similarity=0.312 Sum_probs=165.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------c-cceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------V-QRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~-~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|+++|+++.... . ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999875 999999999876432 1 2569999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++.+||+||+.+.....+.. .. ..+.+++++++.+||++..++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~gl~~~~~~-- 141 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK-----------PA------------------------EINSRALEMLAAVGLEHRANH-- 141 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC-----------HH------------------------HHHHHHHHHHHHcCCchhhhC--
Confidence 89999999999865432110 00 001235678899999754443
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
.+..|||||||||+||++++.+|+++||||||+|||+.+...+.+.|+++.++.|+|+|++.|++ .++. .+|+++
T Consensus 142 ---~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~-~~~~~~ 216 (233)
T PRK11629 142 ---RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAK-RMSRQL 216 (233)
T ss_pred ---ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHH-hhCEEE
Confidence 34579999999999999999999999999999999999999999999998765588999976654 4544 468999
Q ss_pred EEeCCeEEEecCh
Q 000555 400 LLSEGHLVYQGPR 412 (1427)
Q Consensus 400 lL~~G~iv~~G~~ 412 (1427)
+|++|++++.|+.
T Consensus 217 ~l~~G~i~~~~~~ 229 (233)
T PRK11629 217 EMRDGRLTAELSL 229 (233)
T ss_pred EEECCEEEEEecc
Confidence 9999999988764
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=341.30 Aligned_cols=219 Identities=21% Similarity=0.325 Sum_probs=175.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCc-----------------------
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE----------------------- 223 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------------------- 223 (1427)
.++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 36999999999999999999999999999999999999886 8999999875421
Q ss_pred ----ccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcc
Q 000555 224 ----FHVQRTSAYISQTD-NHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKH 298 (1427)
Q Consensus 224 ----~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 298 (1427)
...++.+|||+|++ ..+...||+|||.|+....+.. . .+ .
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~-----------~----------~~--------------~ 141 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS-----------K----------EE--------------A 141 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC-----------H----------HH--------------H
Confidence 12356799999985 3455679999999976543220 0 00 0
Q ss_pred cccHHHHHHHhCCc-cccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 000555 299 SVSTDYVLKVLGLD-LCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMD 377 (1427)
Q Consensus 299 ~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~ 377 (1427)
..+++++++.+||+ +.. ++.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|
T Consensus 142 ~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g 215 (305)
T PRK13651 142 KKRAAKYIELVGLDESYL-----QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QG 215 (305)
T ss_pred HHHHHHHHHHcCCChhhh-----hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CC
Confidence 12367789999996 323 455667999999999999999999999999999999999999999999999864 58
Q ss_pred cEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHHH---HHHhcCCCCCCCC
Q 000555 378 ATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLE---FFESLGFQLPPRK 430 (1427)
Q Consensus 378 ~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~---~f~~~G~~~p~~~ 430 (1427)
+|||++. |..+++.++||+|++|++|++++.|+++++.. .+...|...|...
T Consensus 216 ~tiiivt-Hd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~ 270 (305)
T PRK13651 216 KTIILVT-HDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPPKLL 270 (305)
T ss_pred CEEEEEe-eCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCChHH
Confidence 9998864 55667889999999999999999999998753 3344555544433
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=331.73 Aligned_cols=215 Identities=23% Similarity=0.287 Sum_probs=175.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 589999987663 235899999999999999999999999999999999976531 2479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD----SLRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 973 (1427)
.++.. ..+++.++|++|++.+++ +||+||+.+...... .....+..+.++++++.+++. +..++.+
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 148 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA-- 148 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--
Confidence 87531 234667999999988775 899999988754321 112233456678888888873 3344443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
+.||||||||++|||+|+.+|++|+|||||+|||+.+...+++.|+++. +++|||+++|+++ .+.+.+|++++|+
T Consensus 149 ---~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 149 ---LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 5899999999999999999999999999999999999999999999986 4799999999986 4677899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 6 688888764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=327.25 Aligned_cols=203 Identities=27% Similarity=0.413 Sum_probs=167.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 36999999999999999999999999999999999999875 899999998875432 24569999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHh-CCcccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVL-GLDLCSETVVGN 321 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~ 321 (1427)
+||+||+.++...... . .....++.+++.+ +++...+
T Consensus 90 ~t~~~~l~~~~~~~~~----~---------------------------------~~~~~~~~~l~~~~~l~~~~~----- 127 (222)
T cd03224 90 LTVEENLLLGAYARRR----A---------------------------------KRKARLERVYELFPRLKERRK----- 127 (222)
T ss_pred CcHHHHHHHHhhhcCc----h---------------------------------hHHHHHHHHHHHHHhhhhhhh-----
Confidence 9999999886432210 0 0001234556666 4554333
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
..++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++.| ...++.++||++++|
T Consensus 128 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH-~~~~~~~~~d~i~~l 205 (222)
T cd03224 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQ-NARFALEIADRAYVL 205 (222)
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC-CHHHHHHhccEEEEe
Confidence 34557999999999999999999999999999999999999999999999865 5789998755 456788999999999
Q ss_pred eCCeEEEecChHHHH
Q 000555 402 SEGHLVYQGPRAEVL 416 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~ 416 (1427)
++|++++.|+.+++.
T Consensus 206 ~~G~i~~~~~~~~~~ 220 (222)
T cd03224 206 ERGRVVLEGTAAELL 220 (222)
T ss_pred eCCeEEEeCCHHHHh
Confidence 999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=327.72 Aligned_cols=203 Identities=30% Similarity=0.431 Sum_probs=169.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~lT 244 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999999875 99999999987532 23567999999988888999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.+..+..+... .+ ....++++++.+||++..++. +
T Consensus 92 v~~~l~~~~~~~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~-----~ 131 (220)
T cd03263 92 VREHLRFYARLKGLPK-----------SE------------------------IKEEVELLLRVLGLTDKANKR-----A 131 (220)
T ss_pred HHHHHHHHHHHcCCCH-----------HH------------------------HHHHHHHHHHHcCCHHHHhCh-----h
Confidence 9999998654432100 00 011356788899997655444 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|++.|+ ..++.++||++++|++|
T Consensus 132 ~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~-~~~~~~~~d~i~~l~~g 208 (220)
T cd03263 132 RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHS-MDEAEALCDRIAIMSDG 208 (220)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCC-HHHHHHhcCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999864 5888887554 45777899999999999
Q ss_pred eEEEecChHHH
Q 000555 405 HLVYQGPRAEV 415 (1427)
Q Consensus 405 ~iv~~G~~~~~ 415 (1427)
++++.|+++++
T Consensus 209 ~i~~~~~~~~~ 219 (220)
T cd03263 209 KLRCIGSPQEL 219 (220)
T ss_pred EEEecCCHHHc
Confidence 99999998764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=325.23 Aligned_cols=198 Identities=24% Similarity=0.386 Sum_probs=165.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVR 246 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1427)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 46999999999999999999999999999999999999875 9999999987754 3456799999999888899999
Q ss_pred HHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCC
Q 000555 247 ETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG 326 (1427)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 326 (1427)
||+.+..+..+... .+ ....++++++.+||+...++ .++.
T Consensus 89 e~l~~~~~~~~~~~---------------------~~--------------~~~~~~~~l~~~~l~~~~~~-----~~~~ 128 (210)
T cd03269 89 DQLVYLAQLKGLKK---------------------EE--------------ARRRIDEWLERLELSEYANK-----RVEE 128 (210)
T ss_pred HHHHHHHHHcCCCh---------------------HH--------------HHHHHHHHHHHcCChHHHhC-----cHhh
Confidence 99988654332100 00 01135678889999765444 3456
Q ss_pred CChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeE
Q 000555 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHL 406 (1427)
Q Consensus 327 LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~i 406 (1427)
|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.++ ++|+|++.| ...++.+++|++++|++|++
T Consensus 129 LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH-~~~~~~~~~d~i~~l~~g~i 206 (210)
T cd03269 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTH-QMELVEELCDRVLLLNKGRA 206 (210)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECC-CHHHHHHhhhEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999998654 789988654 45677889999999999999
Q ss_pred EEec
Q 000555 407 VYQG 410 (1427)
Q Consensus 407 v~~G 410 (1427)
++.|
T Consensus 207 ~~~~ 210 (210)
T cd03269 207 VLYG 210 (210)
T ss_pred EecC
Confidence 8764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=336.10 Aligned_cols=215 Identities=24% Similarity=0.320 Sum_probs=173.3
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEEEccCCC-CCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDN-HIPEL 243 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~l 243 (1427)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 5999999999999999999999999999999999999876 999999999875432 3467999999863 45678
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||+||+.|+.+..+.. .. ....+++++++.+||.+..+. .
T Consensus 96 tv~e~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~L~~~~~~-----~ 135 (274)
T PRK13647 96 TVWDDVAFGPVNMGLD-----------KD------------------------EVERRVEEALKAVRMWDFRDK-----P 135 (274)
T ss_pred cHHHHHHhhHHHcCCC-----------HH------------------------HHHHHHHHHHHHCCCHHHhcC-----C
Confidence 9999999865432210 00 001235678999999754444 4
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
+..|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|++++++ ++|+|++.| ..+++.++||+|++|++
T Consensus 136 ~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH-~~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 136 PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATH-DVDLAAEWADQVIVLKE 213 (274)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeC-CHHHHHHhCCEEEEEEC
Confidence 5579999999999999999999999999999999999999999999998754 889998754 45677789999999999
Q ss_pred CeEEEecChHHHH--HHHHhcCCCCC
Q 000555 404 GHLVYQGPRAEVL--EFFESLGFQLP 427 (1427)
Q Consensus 404 G~iv~~G~~~~~~--~~f~~~G~~~p 427 (1427)
|++++.|+++++. +.++..|+.+|
T Consensus 214 G~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 214 GRVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred CEEEEECCHHHhcCHHHHHHcCCCCC
Confidence 9999999987542 22334454443
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=323.80 Aligned_cols=193 Identities=27% Similarity=0.392 Sum_probs=163.2
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc-ccccceEEEEccCCCCCCCCCHHHHHHH
Q 000555 857 NVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFARISGYVEQNDIHSPQVTVEESLWF 935 (1427)
Q Consensus 857 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 935 (1427)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999865 357999999987643 1234679999999999999999999987
Q ss_pred HHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000555 936 SANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015 (1427)
Q Consensus 936 ~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~ 1015 (1427)
....+. .. .++.++.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 1233456889999999988777765 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 1016 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 1016 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
.+++.|+++++ .|+|||+++|++. ++.+.+|++++|++ |+++..
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 210 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQ 210 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeec
Confidence 99999999875 4899999999975 46678999999986 566654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=331.67 Aligned_cols=214 Identities=27% Similarity=0.331 Sum_probs=175.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+. .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588999987652 24589999999999999999999999999999999997642 12589999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD----SLRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 973 (1427)
.+... ..+++.+||++|++.+++ +|++||+.+..... ..+.++..+.++++++.+++. +..++.+
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 152 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA-- 152 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh--
Confidence 87532 134567999999988887 89999999875432 123334445678899999884 3334433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++.+.+|++++|+
T Consensus 153 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 153 ---LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 57999999999999999999999999999999999999999999999864 799999999975 4667899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 6 688888764
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=327.21 Aligned_cols=207 Identities=34% Similarity=0.574 Sum_probs=168.4
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCH
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1427)
.+++|+|+|+++++||+++|+||||||||||+++|+|.+++..+.+|+|.++|+++.....++.++|++|++.+++.+||
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 35799999999999999999999999999999999999982111389999999987654556789999999989999999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHH-HHHHhCCccccccccccccC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDY-VLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~t~vg~~~~ 324 (1427)
+||+.|+........ . .+.. .....+. .++.+++++. .++.+
T Consensus 99 ~enl~~~~~~~~~~~-~-------~~~~------------------------~~~~~~~~~l~~~~l~~~-----~~~~~ 141 (226)
T cd03234 99 RETLTYTAILRLPRK-S-------SDAI------------------------RKKRVEDVLLRDLALTRI-----GGNLV 141 (226)
T ss_pred HHHHHHHHHhhcccc-c-------chHH------------------------HHHHHHHHHHHhhcchhh-----hcccc
Confidence 999998754332100 0 0000 0011233 6778887643 34556
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ ++|+|++.|++..++.++||++++|++|
T Consensus 142 ~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 142 KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 679999999999999999999999999999999999999999999998654 8899998777656899999999999999
Q ss_pred eEEEec
Q 000555 405 HLVYQG 410 (1427)
Q Consensus 405 ~iv~~G 410 (1427)
+++++|
T Consensus 221 ~i~~~g 226 (226)
T cd03234 221 EIVYSG 226 (226)
T ss_pred EEEecC
Confidence 999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=331.42 Aligned_cols=217 Identities=26% Similarity=0.304 Sum_probs=177.1
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478999987663 245899999999999999999999999999999999986532 3489999999
Q ss_pred ccCC-----cccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKE-----QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ..+.++..+.++++++.+++.. ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 123456799999999999999999999886543210 1123334456788899998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+...+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 699999999975 4677899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 6 688887764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=332.27 Aligned_cols=217 Identities=21% Similarity=0.250 Sum_probs=178.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478999987652 2468999999999999999999999999999999999865 3579999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhccCC----------c--CCCHHHHHHHHHHHHHHcCCcccccc
Q 000555 906 EQS---T-FARISGYVEQNDIHSPQVTVEESLWFSANLRLS----------K--EVSKNQRHEFVEEVMRLVELDSLRDA 969 (1427)
Q Consensus 906 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~----------~--~~~~~~~~~~v~~~l~~l~L~~~~~~ 969 (1427)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.++++++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233589999999999999999999986432110 0 00112233567888999999877776
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhce
Q 000555 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1048 (1427)
Q Consensus 970 ~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~ 1048 (1427)
.+ ..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|++. ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 65 479999999999999999999999999999999999999999999998775 899999999976 56788999
Q ss_pred EEEEecCcEEEEccCC
Q 000555 1049 LLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1049 v~~l~~gg~~~~~g~~ 1064 (1427)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999986 678888775
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=332.19 Aligned_cols=213 Identities=27% Similarity=0.419 Sum_probs=177.7
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|+++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67889887653 2468999999999999999999999999999999999865 35799999998653
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000555 907 Q---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 983 (1427)
. ..+++.++|++|++.+++.+||+||+.+..... ....++..+.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 224467899999988888899999998764321 1122233456788999999988777765 4799999
Q ss_pred HHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 984 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 984 rqrl~ia~aL~------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|+++. ++|+|||+++|++. .+...+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 57899999999975 46678999999986 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 77777764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=324.97 Aligned_cols=198 Identities=28% Similarity=0.441 Sum_probs=165.6
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCCCCH
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~lTV 245 (1427)
++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999875 99999999987532 235679999999988888999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.+.....+.. .. ....+++++++.+||++..+. .++
T Consensus 96 ~e~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~ 135 (218)
T cd03266 96 RENLEYFAGLYGLK-----------GD------------------------ELTARLEELADRLGMEELLDR-----RVG 135 (218)
T ss_pred HHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHHcCCHHHHhh-----hhh
Confidence 99998864432210 00 001235678899999754444 455
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++.|+ ..++.+++|++++|++|+
T Consensus 136 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~-~~~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHI-MQEVERLCDRVVVLHRGR 213 (218)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999865 48899987554 567888999999999999
Q ss_pred EEEec
Q 000555 406 LVYQG 410 (1427)
Q Consensus 406 iv~~G 410 (1427)
+++.|
T Consensus 214 i~~~~ 218 (218)
T cd03266 214 VVYEG 218 (218)
T ss_pred EeecC
Confidence 98764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=330.56 Aligned_cols=204 Identities=23% Similarity=0.333 Sum_probs=166.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-----CCCCCceeEEEECCeecCcc-----cccceEEEEccC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKL-----DSSLKKSGNITYNGYKLDEF-----HVQRTSAYISQT 236 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~-----~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~ 236 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ +|. +|+|.++|+++... ..++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 36999999999999999999999999999999999998 664 89999999987532 235679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccc
Q 000555 237 DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316 (1427)
Q Consensus 237 ~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 316 (1427)
+.++ .+||+||+.++.+..+... .. ....+++++++.+||.+..+
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~ 134 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL----------KE------------------------ELDERVEEALRKAALWDEVK 134 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc----------HH------------------------HHHHHHHHHHHHcCCChHHh
Confidence 8777 7999999998754322100 00 00123567888999975443
Q ss_pred cccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcC
Q 000555 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 317 t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D 396 (1427)
.... +..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++ +|+|++.|+ .+++.++||
T Consensus 135 ~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~-~~~~~~~~d 208 (227)
T cd03260 135 DRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHN-MQQAARVAD 208 (227)
T ss_pred ccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEecc-HHHHHHhCC
Confidence 3220 4679999999999999999999999999999999999999999999998653 788886554 567788999
Q ss_pred cEEEEeCCeEEEecChHH
Q 000555 397 DLLLLSEGHLVYQGPRAE 414 (1427)
Q Consensus 397 ~vilL~~G~iv~~G~~~~ 414 (1427)
++++|++|++++.|++++
T Consensus 209 ~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 209 RTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEEeCCEEEEecCccc
Confidence 999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=340.20 Aligned_cols=214 Identities=21% Similarity=0.286 Sum_probs=175.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------cc-ceEEEEccCC--
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQ-RTSAYISQTD-- 237 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~yv~Q~~-- 237 (1427)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|....+|+|.++|+++.... .+ +.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 56999999999999999999999999999999999999874224899999999885432 12 4799999997
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccc
Q 000555 238 NHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSET 317 (1427)
Q Consensus 238 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 317 (1427)
.+.+.+||.+++.+....... ..+.+ ...++.++++.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~----------~~~~~------------------------~~~~~~~~L~~vgL~~~~~~ 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG----------MSKAE------------------------AFEESVRMLDAVKMPEARKR 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC----------CCHHH------------------------HHHHHHHHHHHcCCCChHHH
Confidence 578899999999876433210 00000 01235678889999753222
Q ss_pred ccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCc
Q 000555 318 VVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 318 ~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~ 397 (1427)
-++.+.+|||||||||+||+||+.+|+++++||||+|||..++.+|++.|+++.++.+.|+|++. |....+.+++|+
T Consensus 155 --~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iT-Hdl~~~~~~~Dr 231 (330)
T PRK09473 155 --MKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMIT-HDLGVVAGICDK 231 (330)
T ss_pred --hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEE-CCHHHHHHhCCE
Confidence 24567889999999999999999999999999999999999999999999999876788999864 556677889999
Q ss_pred EEEEeCCeEEEecChHHHHH
Q 000555 398 LLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 398 vilL~~G~iv~~G~~~~~~~ 417 (1427)
|++|++|+|++.|+.+++.+
T Consensus 232 i~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 232 VLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998863
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=334.67 Aligned_cols=213 Identities=25% Similarity=0.367 Sum_probs=178.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ +++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 57888887652 12358999999999999999999999999999999999865 35799999998764
Q ss_pred c----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 907 Q----STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 907 ~----~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
. ...++.+||++|++. .++..|+.||+.+..... ..+..+..+.++++++.++|.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 466789999998765322 2344455567889999999988877765 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++ ..+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999998877999999999976 34 66999999986 678888
Q ss_pred cCC
Q 000555 1062 GKL 1064 (1427)
Q Consensus 1062 g~~ 1064 (1427)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 875
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=376.26 Aligned_cols=207 Identities=24% Similarity=0.373 Sum_probs=169.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|++++||+.++|+||||||||||+++|+|++ |. +|+|.+||+++++. ..++.++||+|++.+|. .
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-G 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-c
Confidence 46999999999999999999999999999999999999 75 89999999998765 35788999999987665 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
|++|||.++.. .. . ++++++..+.+ ..++.++ .|++..||.+|+++
T Consensus 438 TI~eNI~~g~~--~~---~------------------~eei~~al~~a---------~l~~~i~--~lp~G~dT~vge~G 483 (588)
T PRK11174 438 TLRDNVLLGNP--DA---S------------------DEQLQQALENA---------WVSEFLP--LLPQGLDTPIGDQA 483 (588)
T ss_pred CHHHHhhcCCC--CC---C------------------HHHHHHHHHHh---------CHHHHHH--hcccccccccccCC
Confidence 99999998621 00 0 01111111111 0122222 35667899999986
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
. .||||||||++||||++++|+||+||||||+||+.++..|.+.|+++.+ ++|+|++.|++ +..+.||+|++|++
T Consensus 484 ~-~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl--~~i~~aD~Iivl~~ 558 (588)
T PRK11174 484 A-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQL--EDLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCh--HHHHhCCEEEEEeC
Confidence 5 5999999999999999999999999999999999999999999998753 78998877776 66788999999999
Q ss_pred CeEEEecChHHHHH
Q 000555 404 GHLVYQGPRAEVLE 417 (1427)
Q Consensus 404 G~iv~~G~~~~~~~ 417 (1427)
|+++++|+++++.+
T Consensus 559 G~i~e~G~~~eL~~ 572 (588)
T PRK11174 559 GQIVQQGDYAELSQ 572 (588)
T ss_pred CeEeecCCHHHHHh
Confidence 99999999999874
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=341.51 Aligned_cols=221 Identities=21% Similarity=0.351 Sum_probs=175.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-------------------ccc
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-------------------HVQ 227 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------------------~~~ 227 (1427)
.++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999876 99999999887432 235
Q ss_pred ceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHH
Q 000555 228 RTSAYISQTDN-HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVL 306 (1427)
Q Consensus 228 ~~~~yv~Q~~~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l 306 (1427)
+.++||+|++. .+...||+||+.|+....+.. .. +...++++++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~-----------~~------------------------~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK-----------KS------------------------EAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC-----------HH------------------------HHHHHHHHHH
Confidence 67999999862 333469999999875322110 00 0012356788
Q ss_pred HHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Q 000555 307 KVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQ 386 (1427)
Q Consensus 307 ~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q 386 (1427)
+.+||+.. ..++.+..|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ .++|||++.|+
T Consensus 161 ~~~gL~~~----~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd 235 (320)
T PRK13631 161 NKMGLDDS----YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHT 235 (320)
T ss_pred HHcCCChh----HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecC
Confidence 99999621 12445567999999999999999999999999999999999999999999999865 48899987544
Q ss_pred CchhHHhhcCcEEEEeCCeEEEecChHHHHH---HHHhcCCCCCCCCC
Q 000555 387 PPPETFDLFDDLLLLSEGHLVYQGPRAEVLE---FFESLGFQLPPRKG 431 (1427)
Q Consensus 387 ~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~---~f~~~G~~~p~~~~ 431 (1427)
..++.++||+|++|++|++++.|+++++.. .++..|+..|....
T Consensus 236 -~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 282 (320)
T PRK13631 236 -MEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRVIQ 282 (320)
T ss_pred -HHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChHHH
Confidence 556788999999999999999999998752 34556666554333
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=330.57 Aligned_cols=208 Identities=25% Similarity=0.400 Sum_probs=172.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 46999999999999999999999999999999999999875 89999999987542 2346799999999899899
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||+||+.++.+..+.. .. .....++++++.+||+.. ...++.
T Consensus 91 tv~e~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~l~l~~~---~~~~~~ 132 (242)
T cd03295 91 TVEENIALVPKLLKWP-----------KE------------------------KIRERADELLALVGLDPA---EFADRY 132 (242)
T ss_pred cHHHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHHcCCCcH---HHHhcC
Confidence 9999999865432210 00 001135678889999740 023445
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ ..++.+++|+|++|++
T Consensus 133 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~-~~~~~~~~d~i~~l~~ 211 (242)
T cd03295 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD-IDEAFRLADRIAIMKN 211 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC-HHHHHHhCCEEEEEEC
Confidence 567999999999999999999999999999999999999999999999876558899887655 4577889999999999
Q ss_pred CeEEEecChHHHH
Q 000555 404 GHLVYQGPRAEVL 416 (1427)
Q Consensus 404 G~iv~~G~~~~~~ 416 (1427)
|++++.|+.+++.
T Consensus 212 G~i~~~~~~~~~~ 224 (242)
T cd03295 212 GEIVQVGTPDEIL 224 (242)
T ss_pred CEEEEecCHHHHH
Confidence 9999999988764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=347.21 Aligned_cols=201 Identities=24% Similarity=0.308 Sum_probs=173.5
Q ss_pred ceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcc---c----ccceEEEEccCCCCC
Q 000555 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS---T----FARISGYVEQNDIHS 924 (1427)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~~~ 924 (1427)
..+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... . .++.+|||+|+..++
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 458999999999999999999999999999999999865 3579999999876431 1 235799999999999
Q ss_pred CCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000555 925 PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDE 1004 (1427)
Q Consensus 925 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDE 1004 (1427)
+++||+||+.+....+ ..+.++..+.++++++.++|.+..+..+ ..||||||||++|||||+.+|++|||||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999876543 2234455567889999999998877765 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1005 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1005 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 9999999999999999999875 5899999999976 57788999999986 688887764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=349.31 Aligned_cols=209 Identities=23% Similarity=0.400 Sum_probs=174.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|+++++||+++|+||||||||||||+|+|.++|. +|+|.++|+++... ..++.+|||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999886 99999999987653 3457899999999888899
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||+||+.++...... . .... ......+++++++.+||.+..+ +.
T Consensus 93 tv~e~v~~~~~~~~~---~---~~~~-------------------------~~~~~~~v~~~le~vgl~~~~~-----~~ 136 (402)
T PRK09536 93 DVRQVVEMGRTPHRS---R---FDTW-------------------------TETDRAAVERAMERTGVAQFAD-----RP 136 (402)
T ss_pred CHHHHHHhccchhcc---c---ccCC-------------------------CHHHHHHHHHHHHHcCCchhhc-----CC
Confidence 999999986321100 0 0000 0001234678899999976544 44
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
++.|||||||||.|||||+++|++|||||||+|||+.++.++.+.|+++++ .++|+|+++ |..+++.++||++++|++
T Consensus 137 ~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivs-Hdl~~~~~~adrii~l~~ 214 (402)
T PRK09536 137 VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAI-HDLDLAARYCDELVLLAD 214 (402)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEE-CCHHHHHHhCCEEEEEEC
Confidence 567999999999999999999999999999999999999999999999975 488999875 556788899999999999
Q ss_pred CeEEEecChHHHH
Q 000555 404 GHLVYQGPRAEVL 416 (1427)
Q Consensus 404 G~iv~~G~~~~~~ 416 (1427)
|++++.|+++++.
T Consensus 215 G~iv~~G~~~ev~ 227 (402)
T PRK09536 215 GRVRAAGPPADVL 227 (402)
T ss_pred CEEEEecCHHHHh
Confidence 9999999999875
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=329.02 Aligned_cols=215 Identities=24% Similarity=0.340 Sum_probs=177.2
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 67888876552 2468999999999999999999999999999999999765 35799999998754
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhccCC--c---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000555 907 QS----TFARISGYVEQNDIHSPQVTVEESLWFSANLRLS--K---EVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977 (1427)
Q Consensus 907 ~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~--~---~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 977 (1427)
.. ..++.++|++|++.+++.+||+||+.+....... . ....++..+.++++++.+++.+..+..+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 31 1234699999999999999999999886432100 0 0112334456889999999988777665 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999876 789999999975 46678999999986 67
Q ss_pred EEEccCC
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~g~~ 1064 (1427)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 7777764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=327.52 Aligned_cols=195 Identities=26% Similarity=0.411 Sum_probs=161.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-------ccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-------VQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999875 999999999875432 23579999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++.+||+||+.++....+.. ..+ ....++++++.+||++..+.
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~l~~~~~~-- 136 (218)
T cd03255 94 LPDLTALENVELPLLLAGVP-----------KKE------------------------RRERAEELLERVGLGDRLNH-- 136 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCC-----------HHH------------------------HHHHHHHHHHHcCCchhhhc--
Confidence 99999999999875433210 000 01235678899999754443
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
.++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|++ .++. .||+++
T Consensus 137 ---~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~ 211 (218)
T cd03255 137 ---YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRII 211 (218)
T ss_pred ---ChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEE
Confidence 44579999999999999999999999999999999999999999999998764588999976665 4554 999999
Q ss_pred EEeCCeE
Q 000555 400 LLSEGHL 406 (1427)
Q Consensus 400 lL~~G~i 406 (1427)
+|++|++
T Consensus 212 ~l~~G~i 218 (218)
T cd03255 212 ELRDGKI 218 (218)
T ss_pred EeeCCcC
Confidence 9999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=317.84 Aligned_cols=183 Identities=46% Similarity=0.791 Sum_probs=157.5
Q ss_pred ccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCC
Q 000555 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~ 242 (1427)
..+.+|+|+|+++++||+++|+||||||||||+++|+|.++|..+.+|+|.++|+++... ..++.++|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 345799999999999999999999999999999999999983222499999999987643 245679999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.++.+.. .+.
T Consensus 98 ~tv~~~l~~~~~~~---------------------------------------------------------------~~~ 114 (202)
T cd03233 98 LTVRETLDFALRCK---------------------------------------------------------------GNE 114 (202)
T ss_pred CcHHHHHhhhhhhc---------------------------------------------------------------ccc
Confidence 99999998753210 122
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++.+.|+|+++||+.+++.+.+|++++|+
T Consensus 115 ~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~ 194 (202)
T cd03233 115 FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY 194 (202)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE
Confidence 34569999999999999999999999999999999999999999999998765567877777888788999999999999
Q ss_pred CCeEEEec
Q 000555 403 EGHLVYQG 410 (1427)
Q Consensus 403 ~G~iv~~G 410 (1427)
+|++++.|
T Consensus 195 ~G~i~~~g 202 (202)
T cd03233 195 EGRQIYYG 202 (202)
T ss_pred CCEEEecC
Confidence 99998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=341.93 Aligned_cols=210 Identities=23% Similarity=0.285 Sum_probs=175.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCC--C
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTD--N 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~--~ 238 (1427)
.++|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 57999999999999999999999999999999999999875 899999999886432 356799999997 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
+++.+||.||+.+..+.... + +.+.+ ...+++++++.+||.. .
T Consensus 111 l~p~~tv~~~i~~~l~~~~~--~-------~~~~~------------------------~~~~~~~~l~~vgl~~----~ 153 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHP--K-------LSRQE------------------------VKDRVKAMMLKVGLLP----N 153 (331)
T ss_pred cCCCCCHHHHHHHHHHHhcc--C-------CCHHH------------------------HHHHHHHHHHHcCCCh----H
Confidence 78899999999986543210 0 00000 0123567899999942 1
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
+.++.+..|||||||||+||+||+.+|+++++||||+|||..++.++++.|+++.++.+.|+|++ +|....+.+++|+|
T Consensus 154 ~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~i-THdl~~~~~~~dri 232 (331)
T PRK15079 154 LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFI-AHDLAVVKHISDRV 232 (331)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEE
Confidence 34556678999999999999999999999999999999999999999999999977668899886 56667888899999
Q ss_pred EEEeCCeEEEecChHHHHH
Q 000555 399 LLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~~ 417 (1427)
++|++|++++.|+.+++.+
T Consensus 233 ~vl~~G~ive~g~~~~i~~ 251 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVYH 251 (331)
T ss_pred EEEECCEEEEEcCHHHHHc
Confidence 9999999999999988753
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.41 Aligned_cols=214 Identities=26% Similarity=0.389 Sum_probs=179.3
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ +++.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67889987663 12358999999999999999999999999999999999865 35899999998754
Q ss_pred c---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 907 Q---STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
. ..+++.+||++|++. .+...||.||+.+..... ..+.++..+.++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999963 344689999998765321 2344445567889999999988777765 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999986 56788999999986 678888
Q ss_pred cCC
Q 000555 1062 GKL 1064 (1427)
Q Consensus 1062 g~~ 1064 (1427)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=334.18 Aligned_cols=213 Identities=25% Similarity=0.371 Sum_probs=176.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 57888887652 2458999999999999999999999999999999999765 35799999998753
Q ss_pred c-----ccccceEEEEccCCCC-CCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 Q-----STFARISGYVEQNDIH-SPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~-----~~~~~~~gyv~Q~~~~-~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
. ..+++.+||++|++.. +...|+.||+.+..... ....++..+.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1345679999998753 34568999998764322 2233444556788999999988777765 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999998877899999999975 46678999999986 67888
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 7764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=330.65 Aligned_cols=217 Identities=24% Similarity=0.323 Sum_probs=177.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 902 (1427)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 478899988763 235899999999999999999999999999999999976421 2589999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD----SLRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++.+||+||+.+....+. ..+.++..+.++++++.+++. +..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 146 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPG-- 146 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc--
Confidence 87531 2345679999999999999999999988754321 112334455678899999884 2334333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 147 ---GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 57999999999999999999999999999999999999999999999864 689999999975 4678899999997
Q ss_pred c-----CcEEEEccCC
Q 000555 1054 R-----GGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~-----gg~~~~~g~~ 1064 (1427)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 2 4788888874
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=337.96 Aligned_cols=207 Identities=21% Similarity=0.308 Sum_probs=170.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-------cccceEEEEccCCC-
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-------HVQRTSAYISQTDN- 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~~- 238 (1427)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+|||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 46999999999999999999999999999999999999886 89999999987531 24568999999852
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCc-ccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD-LCSET 317 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t 317 (1427)
.+...||.||+.|+....+.. .. + ....++++++.+||. ...
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~gL~~~~~-- 139 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMN-----------LD----------E--------------VKNYAHRLLMDLGFSRDVM-- 139 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCC-----------HH----------H--------------HHHHHHHHHHHcCCChhhh--
Confidence 333469999999875432210 00 0 011356788999995 333
Q ss_pred ccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCc
Q 000555 318 VVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 318 ~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~ 397 (1427)
+..++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.++.|+|||++.| ..+++.++||+
T Consensus 140 ---~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH-~~~~~~~~~dr 215 (286)
T PRK13646 140 ---SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH-DMNEVARYADE 215 (286)
T ss_pred ---hCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec-CHHHHHHhCCE
Confidence 34566799999999999999999999999999999999999999999999987666899999754 45678889999
Q ss_pred EEEEeCCeEEEecChHHHHH
Q 000555 398 LLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 398 vilL~~G~iv~~G~~~~~~~ 417 (1427)
|++|++|++++.|+++++..
T Consensus 216 i~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=322.73 Aligned_cols=192 Identities=27% Similarity=0.357 Sum_probs=160.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCC-CCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDN-HIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~-~~~~lTV 245 (1427)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999999875 9999999998754344567999999864 3456799
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.++....+. ...+++++++.+||++..++ .+.
T Consensus 90 ~e~l~~~~~~~~~---------------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~ 125 (205)
T cd03226 90 REELLLGLKELDA---------------------------------------GNEQAETVLKDLDLYALKER-----HPL 125 (205)
T ss_pred HHHHhhhhhhcCc---------------------------------------cHHHHHHHHHHcCCchhcCC-----Cch
Confidence 9999875422100 00135678899999765444 445
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|+ ..++.++||++++|++|+
T Consensus 126 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~-~~~~~~~~d~i~~l~~G~ 203 (205)
T cd03226 126 SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHD-YEFLAKVCDRVLLLANGA 203 (205)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999865 48899987554 566778999999999999
Q ss_pred EE
Q 000555 406 LV 407 (1427)
Q Consensus 406 iv 407 (1427)
++
T Consensus 204 iv 205 (205)
T cd03226 204 IV 205 (205)
T ss_pred EC
Confidence 75
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=334.37 Aligned_cols=215 Identities=27% Similarity=0.365 Sum_probs=180.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3789999876631 124589999999999999999999999999999999998653 589999999876
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ...++.+||++|++. .++..||+||+.+..... ..+.++..+.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 677789999998865332 2234455567899999999998888776 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. .+ ..+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999976 34 46999999986 67888
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 8875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=322.38 Aligned_cols=195 Identities=27% Similarity=0.423 Sum_probs=164.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-cccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-HVQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~~~~~~~lTV 245 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999875 99999999876432 234679999999888889999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.+.....+. .+.+++++++.+||++..++ .+.
T Consensus 90 ~e~l~~~~~~~~~---------------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~ 125 (208)
T cd03268 90 RENLRLLARLLGI---------------------------------------RKKRIDEVLDVVGLKDSAKK-----KVK 125 (208)
T ss_pred HHHHHHHHHhcCC---------------------------------------cHHHHHHHHHHcCCHHHHhh-----hHh
Confidence 9999886432110 01135667888899764444 345
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++.| ...++.+++|++++|++|+
T Consensus 126 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH-~~~~~~~~~d~v~~l~~g~ 203 (208)
T cd03268 126 GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSH-LLSEIQKVADRIGIINKGK 203 (208)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcC-CHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999876 5889988754 4567778999999999999
Q ss_pred EEEec
Q 000555 406 LVYQG 410 (1427)
Q Consensus 406 iv~~G 410 (1427)
+++.|
T Consensus 204 i~~~g 208 (208)
T cd03268 204 LIEEG 208 (208)
T ss_pred EEecC
Confidence 98765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=327.16 Aligned_cols=206 Identities=28% Similarity=0.389 Sum_probs=169.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc--ccceEEEEccCCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH--VQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lT 244 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... ..+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999875 999999998875422 2357999999988888999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.+.....+.. ..+ ....++++++.+||+...++. +
T Consensus 91 ~~~~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~-----~ 130 (236)
T TIGR03864 91 VRQNLRYHAALHGLS-----------RAE------------------------ARERIAALLARLGLAERADDK-----V 130 (236)
T ss_pred HHHHHHHHHHhcCCC-----------HHH------------------------HHHHHHHHHHHcCChhhhcCC-----h
Confidence 999998764432110 000 011256688889997654443 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|++++++.++|+|++.|++ +++. .+|++++|++|
T Consensus 131 ~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G 208 (236)
T TIGR03864 131 RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRG 208 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCC
Confidence 569999999999999999999999999999999999999999999998765588999876654 4554 59999999999
Q ss_pred eEEEecChHHHHH
Q 000555 405 HLVYQGPRAEVLE 417 (1427)
Q Consensus 405 ~iv~~G~~~~~~~ 417 (1427)
++++.|+.+++..
T Consensus 209 ~i~~~~~~~~~~~ 221 (236)
T TIGR03864 209 RVLADGAAAELRG 221 (236)
T ss_pred eEEEeCCHHHHHH
Confidence 9999999887754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=333.88 Aligned_cols=207 Identities=21% Similarity=0.350 Sum_probs=171.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1427)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35999999999999999999999999999999999999875 899999998875321 245799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+.+||.||+.++...... ....+ ....++.+++.+||++..+.
T Consensus 97 ~~~tv~enl~~~~~~~~~----------~~~~~------------------------~~~~~~~~l~~~gl~~~~~~--- 139 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ----------LPAPL------------------------LHSTVMMKLEAVGLRGAAKL--- 139 (269)
T ss_pred CCCCHHHHHHHHHHHccC----------CCHHH------------------------HHHHHHHHHHHcCChhhhhC---
Confidence 899999999886432110 00000 01125667889999765544
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
.+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.++.|+|+|++. |...++.++||++++
T Consensus 140 --~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs-H~~~~~~~~~d~v~~ 216 (269)
T PRK11831 140 --MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVS-HDVPEVLSIADHAYI 216 (269)
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-cCHHHHHHhhCEEEE
Confidence 34569999999999999999999999999999999999999999999998765588998875 455678899999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|++++.|+++++.
T Consensus 217 l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 217 VADKKIVAHGSAQALQ 232 (269)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=317.80 Aligned_cols=196 Identities=33% Similarity=0.607 Sum_probs=162.8
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc-eeEEEEEECCcc
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 904 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 904 (1427)
.++|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57999999988642 13457999999999999999999999999999999999976522 468999999987
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 905 KEQ--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 905 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
... ...++.++|++|++.+++.+||+||+.+..... .+..+ ..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~-----~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFV-----RGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccch-----hhCCHH
Confidence 643 235667999999999999999999998754211 22222 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ ++|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 678777776654467788999999986 577665
Q ss_pred c
Q 000555 1062 G 1062 (1427)
Q Consensus 1062 g 1062 (1427)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=375.47 Aligned_cols=220 Identities=25% Similarity=0.408 Sum_probs=182.0
Q ss_pred hhccccCCccccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEE
Q 000555 155 TGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSA 231 (1427)
Q Consensus 155 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~ 231 (1427)
.++.+.+|.+++.+||+|+|+++++|+.+||+|||||||||.+.+|-..++|+ +|+|.++|+++++.+ +|+++|
T Consensus 991 ~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 991 RNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred eeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcc
Confidence 34556678888999999999999999999999999999999999999999986 999999999998765 578999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCC
Q 000555 232 YISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGL 311 (1427)
Q Consensus 232 yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL 311 (1427)
.|+|+|.+|. .|+||||.||.+ ... ..+ +.+..|.+. ..+. ..+|
T Consensus 1068 lVsQEP~LF~-~TIrENI~YG~~--~vs------~~e---------------Ii~Aak~AN--------aH~F---I~sL 1112 (1228)
T KOG0055|consen 1068 LVSQEPVLFN-GTIRENIAYGSE--EVS------EEE---------------IIEAAKLAN--------AHNF---ISSL 1112 (1228)
T ss_pred eeccCchhhc-ccHHHHHhccCC--CCC------HHH---------------HHHHHHHhh--------hHHH---HhcC
Confidence 9999998775 599999999821 110 011 111111110 0111 2369
Q ss_pred ccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhH
Q 000555 312 DLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPET 391 (1427)
Q Consensus 312 ~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~ 391 (1427)
++.+||.||+++. +||||||||++||||+++||+||||||.||+||+++.+.+.+.|++... |+|.|+.-|. ..+
T Consensus 1113 P~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHR--LST 1187 (1228)
T KOG0055|consen 1113 PQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHR--LST 1187 (1228)
T ss_pred cCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecc--hhh
Confidence 9999999999987 5999999999999999999999999999999999999999999999753 6666554454 578
Q ss_pred HhhcCcEEEEeCCeEEEecChHHHHH
Q 000555 392 FDLFDDLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 392 ~~~~D~vilL~~G~iv~~G~~~~~~~ 417 (1427)
.+.||.|+|+++|+|+++|++++++.
T Consensus 1188 IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1188 IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hhcCCEEEEEECCEEEecccHHHHHh
Confidence 89999999999999999999999985
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=331.55 Aligned_cols=216 Identities=25% Similarity=0.373 Sum_probs=178.4
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67888887652 2468999999999999999999999999999999999765 35799999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCC-cCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 907 Q---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
. ..+++.++|++|+..+++.+|+.||+.++...... .....+...+.++++++.+++.+..++.+ ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 23455699999999888889999999875311000 01111233456788999999988777765 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||||++||+||+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777899999999986 57788999999986 6777877
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
+.
T Consensus 221 ~~ 222 (255)
T PRK11231 221 TP 222 (255)
T ss_pred CH
Confidence 65
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=365.22 Aligned_cols=209 Identities=29% Similarity=0.357 Sum_probs=176.1
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+||+|+++. .++++|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 36999999998742 23568999999999999999999999999999999999876 358999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 974 (1427)
.++ ..+++.+|||+|++.+++ .|++||+.++.. .++ +.+.++++..++.+ -.||.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 654 457889999999998886 599999987521 233 23566777776654 346777754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 4679999999999999999999999999999999999999999999886 589999999975 5678999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 688888875
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=329.88 Aligned_cols=213 Identities=23% Similarity=0.338 Sum_probs=170.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc------cccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF------HVQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~~~~~~~yv~Q~~~~~ 240 (1427)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999875 89999999887532 1356799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+.+||+||+.++...... ....... ..+ .....+++++++.+||....+
T Consensus 92 ~~~tv~~~l~~~~~~~~~--~~~~~~~----------~~~---------------~~~~~~~~~~l~~~~l~~~~~---- 140 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKP--TWRSLLG----------RFS---------------EEDKERALSALERVGLADKAY---- 140 (243)
T ss_pred ccccHHHHHhhccccccc--chhhhhc----------ccc---------------HHHHHHHHHHHHHcCcHhhhc----
Confidence 999999999875321000 0000000 000 001123567889999975443
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
+.+..|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.++.++|+|++.|+ ..++.++||++++
T Consensus 141 -~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~-~~~~~~~~d~v~~ 218 (243)
T TIGR02315 141 -QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-VDLAKKYADRIVG 218 (243)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCeEEE
Confidence 34567999999999999999999999999999999999999999999999876568899887554 5677889999999
Q ss_pred EeCCeEEEecChHHH
Q 000555 401 LSEGHLVYQGPRAEV 415 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~ 415 (1427)
|++|++++.|+++++
T Consensus 219 l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 219 LKAGEIVFDGAPSEL 233 (243)
T ss_pred EECCEEEecCCHHHh
Confidence 999999999998875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=315.68 Aligned_cols=190 Identities=61% Similarity=0.969 Sum_probs=161.1
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++.+ ..++++|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899998876421 012468999999999999999999999999999999999643223589999999876
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
. ..+++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 4 345667999999999999999999998653110 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887789999999998644677899999998647888765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=334.04 Aligned_cols=218 Identities=26% Similarity=0.367 Sum_probs=176.2
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++... ...+++|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 368899988763110 011458999999999999999999999999999999999865 3589999999875
Q ss_pred Cc-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000555 906 EQ-------STFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPG 975 (1427)
Q Consensus 906 ~~-------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 975 (1427)
.. ..+++.++|++|++ .+++ .||+||+.+..... ..+.++..+.++++++.++|. ...+..+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP---- 143 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc----
Confidence 42 22456799999986 3444 69999998764322 123344455678899999997 3455554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+|++++|++
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~- 220 (280)
T PRK13649 144 -FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK- 220 (280)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998777899999999975 46678999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|++++.|+.
T Consensus 221 G~i~~~g~~ 229 (280)
T PRK13649 221 GKLVLSGKP 229 (280)
T ss_pred CEEEEeCCH
Confidence 677777764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=334.33 Aligned_cols=216 Identities=26% Similarity=0.378 Sum_probs=175.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCC-CCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDN-HIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~-~~~~ 242 (1427)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35999999999999999999999999999999999999886 99999999988643 23567999999873 6777
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
.||+||+.++.+..+.. .. + ...+++++++.+||++..++
T Consensus 97 ~tv~enl~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~----- 136 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP-----------RE----------E--------------MVERVDQALRQVGMEDFLNR----- 136 (279)
T ss_pred ccHHHHHhhhHhhCCCC-----------HH----------H--------------HHHHHHHHHHHcCChhhhhC-----
Confidence 89999999865432210 00 0 01236778899999765444
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.++.++|||++.|++ .++. .||++++|+
T Consensus 137 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~ 214 (279)
T PRK13635 137 EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMN 214 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEE
Confidence 34579999999999999999999999999999999999999999999999776689999976664 4554 699999999
Q ss_pred CCeEEEecChHHHHH---HHHhcCCCCC
Q 000555 403 EGHLVYQGPRAEVLE---FFESLGFQLP 427 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~---~f~~~G~~~p 427 (1427)
+|++++.|+.+++.. .+...++.+|
T Consensus 215 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 215 KGEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CCEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 999999999988753 3444455443
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=332.09 Aligned_cols=217 Identities=29% Similarity=0.392 Sum_probs=178.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478999987652 2468999999999999999999999999999999999765 3579999999865
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCC-cCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.++|++|+..+++.+|+.||+.+....... .........+.++++++.+++.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456799999998888999999999875321100 00111223456789999999987777765 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998764 899999999976 57788999999986 67777
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 7764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=330.82 Aligned_cols=223 Identities=23% Similarity=0.329 Sum_probs=178.6
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++.....+ ..+++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67899987764210000 0113569999999999999999999999999999999999865 35799999998764
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000555 907 QS------TFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSS 977 (1427)
Q Consensus 907 ~~------~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 977 (1427)
.. .+++.++|++|++ .+.+.+||+|++.+..... ......+..+.++++++.+++. ...+..+ .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 31 1356799999996 4667899999997654311 1122334456688999999996 5666654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999975 46678999999985 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 88888875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=322.54 Aligned_cols=212 Identities=26% Similarity=0.385 Sum_probs=174.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++.. .....+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 47899998765310 011358999999999999999999999999999999999865 3579999999876
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000555 906 EQST------F-ARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSG 978 (1427)
Q Consensus 906 ~~~~------~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 978 (1427)
.... . ++.++|++|++.+++.+|++||+.+....+ ..+..+..+.++++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 256999999999999999999998765432 1233444567889999999987777665 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 979 LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999976 34 56999999986 56
Q ss_pred EE
Q 000555 1058 VI 1059 (1427)
Q Consensus 1058 ~~ 1059 (1427)
++
T Consensus 224 i~ 225 (228)
T PRK10584 224 LQ 225 (228)
T ss_pred EE
Confidence 54
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=332.37 Aligned_cols=217 Identities=23% Similarity=0.313 Sum_probs=179.8
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.+.++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 588999988763 2468999999999999999999999999999999999865 3579999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCC-cCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.++|++|++.+++..|++|++.+......+ .....+...+.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCh
Confidence 33 23345799999999999999999999865211100 00011233456789999999987777765 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57888999999986 67888
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 225 ~g~~ 228 (265)
T PRK10253 225 QGAP 228 (265)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=372.85 Aligned_cols=207 Identities=25% Similarity=0.315 Sum_probs=173.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCC--C
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTD--N 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~--~ 238 (1427)
.++|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 46999999999999999999999999999999999999875 899999999875421 346799999986 4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCc-ccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD-LCSET 317 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t 317 (1427)
+++.+||.|++.+.....+.. .+.+ ...+++++|+.+||+ ...
T Consensus 414 l~~~~tv~~~l~~~~~~~~~~----------~~~~------------------------~~~~~~~~L~~~gL~~~~~-- 457 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHGLL----------PGKA------------------------AAARVAWLLERVGLLPEHA-- 457 (623)
T ss_pred cCCCCCHHHHHHHHHHHcCCC----------CHHH------------------------HHHHHHHHHHHcCCCHHHh--
Confidence 888999999998865432210 0000 012366789999995 323
Q ss_pred ccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCc
Q 000555 318 VVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 318 ~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~ 397 (1427)
++.+..|||||||||+|||||+.+|++|||||||+|||..++.++.+.|+++.++.|.|+|++ +|....+.++||+
T Consensus 458 ---~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~i-sHdl~~v~~~~dr 533 (623)
T PRK10261 458 ---WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFI-SHDMAVVERISHR 533 (623)
T ss_pred ---hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCE
Confidence 445667999999999999999999999999999999999999999999999987668899986 5566788899999
Q ss_pred EEEEeCCeEEEecChHHHH
Q 000555 398 LLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 398 vilL~~G~iv~~G~~~~~~ 416 (1427)
|++|++|++++.|+++++.
T Consensus 534 i~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 534 VAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEEECCEEEEecCHHHHh
Confidence 9999999999999999875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=338.40 Aligned_cols=214 Identities=21% Similarity=0.242 Sum_probs=173.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC-CceeEEEECCeecCccc---c----cceEEEEccCC-
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSL-KKSGNITYNGYKLDEFH---V----QRTSAYISQTD- 237 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~---~----~~~~~yv~Q~~- 237 (1427)
.++|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++.... . ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987421 24899999999875432 1 24699999987
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccc
Q 000555 238 -NHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316 (1427)
Q Consensus 238 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 316 (1427)
.+.+.+||.+++....+.... ..+. +...+++++|+.+||++..
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~----------~~~~------------------------~~~~~~~~~L~~~gL~~~~- 144 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG----------GNKK------------------------TRRQRAIDLLNQVGIPDPA- 144 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC----------CCHH------------------------HHHHHHHHHHHHCCCCChH-
Confidence 478899999998765432210 0000 0112367789999996421
Q ss_pred cccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcC
Q 000555 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 317 t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D 396 (1427)
..-++.+..|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++.|.|+|+++ |....+.+++|
T Consensus 145 -~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iT-Hdl~~~~~~ad 222 (326)
T PRK11022 145 -SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLIT-HDLALVAEAAH 222 (326)
T ss_pred -HHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCC
Confidence 1234567789999999999999999999999999999999999999999999999876789999864 55667788999
Q ss_pred cEEEEeCCeEEEecChHHHHH
Q 000555 397 DLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 397 ~vilL~~G~iv~~G~~~~~~~ 417 (1427)
+|++|++|++++.|+.+++.+
T Consensus 223 ri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 223 KIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEEECCEEEEECCHHHHhh
Confidence 999999999999999998853
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=323.61 Aligned_cols=213 Identities=29% Similarity=0.406 Sum_probs=179.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
+.++|++++++ .+.+|+|+|++++|||+++|+|+||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 35788877653 24689999999999999999999999999999999998653 4799999998764
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 907 QS-TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 907 ~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
.. ..++.++|++|++..++.+|++||+.+....+ ........+.++++++.+++.+..++.+ ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 32 23467999999999998999999998765433 1223334556788999999988877765 589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++.+.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999998764 899999999975 46788999999986 677777753
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=329.50 Aligned_cols=217 Identities=25% Similarity=0.316 Sum_probs=176.5
Q ss_pred CceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-ceeEEEEEE
Q 000555 824 PLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKI 900 (1427)
Q Consensus 824 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i 900 (1427)
+..++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.+
T Consensus 11 ~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 34689999988663 2358999999999999999999999999999999999753 1 135799999
Q ss_pred CCccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 000555 901 SGYPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALV 971 (1427)
Q Consensus 901 ~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v 971 (1427)
+|.+... ..+++.++|++|+..+++ .|++||+.+...... ..+.++..++++++++.+++.+ ..+..+
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 154 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSG 154 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC
Confidence 9987532 234567999999988887 899999987653221 2233444566889999999843 233333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEE
Q 000555 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1051 (1427)
Q Consensus 972 g~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1051 (1427)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. .+.+.+|++++
T Consensus 155 -----~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 227 (260)
T PRK10744 155 -----YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAF 227 (260)
T ss_pred -----CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 5799999999999999999999999999999999999999999999986 4789999999975 46678999999
Q ss_pred EecCcEEEEccCC
Q 000555 1052 MKRGGRVIYGGKL 1064 (1427)
Q Consensus 1052 l~~gg~~~~~g~~ 1064 (1427)
|++ |+++..|+.
T Consensus 228 l~~-G~i~~~g~~ 239 (260)
T PRK10744 228 MYL-GELIEFGNT 239 (260)
T ss_pred EEC-CEEEEeCCH
Confidence 986 678777764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=330.62 Aligned_cols=220 Identities=26% Similarity=0.354 Sum_probs=179.8
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc-eeEEEEEECCcc
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 904 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 904 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478899987652 346899999999999999999999999999999999976532 236999999987
Q ss_pred CCc--------ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCc-----CCCHHHHHHHHHHHHHHcCCcccccccc
Q 000555 905 KEQ--------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSK-----EVSKNQRHEFVEEVMRLVELDSLRDALV 971 (1427)
Q Consensus 905 ~~~--------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~l~L~~~~~~~v 971 (1427)
... ...++.++|++|++.+++.+||+||+.+......+. ....++..+.++++++.+++.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123456899999999999999999998753211000 0112334457889999999987777765
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEE
Q 000555 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELL 1050 (1427)
Q Consensus 972 g~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~ 1050 (1427)
..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.+ .|+|||+++|++. .+...+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 47999999999999999999999999999999999999999999999976 4899999999976 4678899999
Q ss_pred EEecCcEEEEccCCC
Q 000555 1051 LMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 1051 ~l~~gg~~~~~g~~~ 1065 (1427)
+|++ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9986 6778887753
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=368.72 Aligned_cols=135 Identities=23% Similarity=0.298 Sum_probs=107.7
Q ss_pred CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000555 923 HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL-RDALVGFPGSSGLSTEQRKRLTIAVELV---ANPS 998 (1427)
Q Consensus 923 ~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~---~~p~ 998 (1427)
.+...||.|+|.++..-........++..+.+ ++++.+||.+. .+..+ ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999887542211111233444555 47888999875 56654 479999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCcEEEEccCCC
Q 000555 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYGGKLG 1065 (1427)
Q Consensus 999 illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~g~~~ 1065 (1427)
+++|||||+|||+.+...+++.|+++.++|.|||+++|++. ....+|++++|. +||+++..|+..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999975 348899999995 357888888763
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=330.70 Aligned_cols=205 Identities=25% Similarity=0.342 Sum_probs=169.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCC-CCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDN-HIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~-~~~~ 242 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999875 89999999987542 24567999999964 6778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.++....+.. .. +....++++++.+||++..++
T Consensus 99 ~tv~enl~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~~----- 138 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP-----------PK------------------------KMKDIIDDLAKKVGMEDYLDK----- 138 (271)
T ss_pred ccHHHHHHhHHHHcCCC-----------HH------------------------HHHHHHHHHHHHcCCHHHhhC-----
Confidence 89999998864322110 00 001135678899999765444
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|++. ++ ..||++++|+
T Consensus 139 ~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~ 216 (271)
T PRK13632 139 EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFS 216 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEE
Confidence 445799999999999999999999999999999999999999999999987654589998876653 44 4799999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|+++..|+.+++.
T Consensus 217 ~G~i~~~g~~~~~~ 230 (271)
T PRK13632 217 EGKLIAQGKPKEIL 230 (271)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999988765
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=327.84 Aligned_cols=219 Identities=26% Similarity=0.336 Sum_probs=174.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC---CceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~---~~~~~G~i~i~g 902 (1427)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... ..+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 589999988663 2358999999999999999999999999999999999642 113579999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 977 (1427)
.+... ..+++.++|++|++.+++ .||+||+.+....+. ....+...+.++++++.+++.+....... ..+.
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 148 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-ESAL 148 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87642 134567999999988887 599999988754321 11223334567888999998542111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-GK 225 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999854 799999999975 46678999999986 67
Q ss_pred EEEccCC
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~g~~ 1064 (1427)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14242 226 LIEVGPT 232 (253)
T ss_pred EEEeCCH
Confidence 7777764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=331.45 Aligned_cols=215 Identities=26% Similarity=0.378 Sum_probs=179.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 5789999876521 23468999999999999999999999999999999999865 3579999999876
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.+||++|++. .++.+||+||+.+..... ..+.++..+.++++++.++|.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 235677999999974 677899999998864321 1233444567889999999988777765 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ ++|||+++|+++. + ..+|++++|++ |++..
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 5899999999863 4 47999999986 67777
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 7764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=334.04 Aligned_cols=207 Identities=28% Similarity=0.373 Sum_probs=171.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCc-----ccccceEEEEccCCC-CC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE-----FHVQRTSAYISQTDN-HI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~~~~~~~yv~Q~~~-~~ 240 (1427)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. ...++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35999999999999999999999999999999999999875 9999999998741 124567999999863 34
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
...||+||+.++....+.. ..+ ....++++++.+||....
T Consensus 96 ~~~tv~e~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~gL~~~~----- 135 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP-----------EDE------------------------VRKRVDNALKRTGIEHLK----- 135 (283)
T ss_pred ccccHHHHHHhHHHHcCCC-----------HHH------------------------HHHHHHHHHHHCCChhhh-----
Confidence 5679999999865432210 000 012367788999997544
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
++.++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++. |..+++.++||++++
T Consensus 136 ~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvs-H~~~~~~~~~dri~~ 214 (283)
T PRK13636 136 DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIAT-HDIDIVPLYCDNVFV 214 (283)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-cCHHHHHHhCCEEEE
Confidence 4456679999999999999999999999999999999999999999999999776688999875 555677789999999
Q ss_pred EeCCeEEEecChHHHHH
Q 000555 401 LSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~~ 417 (1427)
|++|++++.|+.+++..
T Consensus 215 l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 215 MKEGRVILQGNPKEVFA 231 (283)
T ss_pred EECCEEEEeCCHHHHhc
Confidence 99999999999988763
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=331.19 Aligned_cols=214 Identities=28% Similarity=0.374 Sum_probs=177.7
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.+. .++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 57889887652 12358999999999999999999999999999999999765 35799999998763
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 Q-----STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~-----~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
. ...++.++|++|++. .+...||.||+.+..... ....++..+.+.++++.++|.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999963 334579999998764221 2234445567889999999988888775 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. .+.+.+|++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 46678999999986 67888
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=324.66 Aligned_cols=211 Identities=27% Similarity=0.365 Sum_probs=172.7
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++++|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 35778876552 2468999999999999999999999999999999999865 35799999998754
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCH
Q 000555 907 QS----TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE-LDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 907 ~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..++.++|++|++.+++.+|++||+.+....+. .. ..+.++++++.++ +.+..+..+ ..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCH
Confidence 31 124569999999999999999999988654321 11 1233567777776 555556654 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|++ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999975 46667999999986 67888
Q ss_pred ccCCC
Q 000555 1061 GGKLG 1065 (1427)
Q Consensus 1061 ~g~~~ 1065 (1427)
.|+..
T Consensus 213 ~~~~~ 217 (230)
T TIGR03410 213 SGAGD 217 (230)
T ss_pred ECCHH
Confidence 88753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=329.35 Aligned_cols=205 Identities=23% Similarity=0.371 Sum_probs=169.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-----------cccceEEEEcc
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-----------HVQRTSAYISQ 235 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----------~~~~~~~yv~Q 235 (1427)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 35999999999999999999999999999999999999875 89999999887531 23467999999
Q ss_pred CCCCCCCCCHHHHHHHHHHh-cCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccc
Q 000555 236 TDNHIPELTVRETFDFAARW-QGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLC 314 (1427)
Q Consensus 236 ~~~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 314 (1427)
++.+++.+||+||+.++... ++.. .. .....++.+++.+||+..
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~gl~~~ 137 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGEP-----------KE------------------------EATARARELLAKVGLAGK 137 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCCC-----------HH------------------------HHHHHHHHHHHHcCCcch
Confidence 98888889999999886421 1100 00 001235678888999754
Q ss_pred cccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhh
Q 000555 315 SETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL 394 (1427)
Q Consensus 315 ~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~ 394 (1427)
.+ ..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++. |...++.++
T Consensus 138 ~~-----~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~t-H~~~~~~~~ 210 (250)
T PRK11264 138 ET-----SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVT-HEMSFARDV 210 (250)
T ss_pred hh-----CChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHh
Confidence 43 34567999999999999999999999999999999999999999999999865 488988865 455678889
Q ss_pred cCcEEEEeCCeEEEecChHHHH
Q 000555 395 FDDLLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 395 ~D~vilL~~G~iv~~G~~~~~~ 416 (1427)
||++++|++|++++.|+.+++.
T Consensus 211 ~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 211 ADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred cCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999988764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=324.49 Aligned_cols=198 Identities=26% Similarity=0.369 Sum_probs=166.4
Q ss_pred ccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 000555 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLW 934 (1427)
Q Consensus 855 L~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 934 (1427)
|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999865 35799999998764322 12489999999999999999998
Q ss_pred HHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000555 935 FSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014 (1427)
Q Consensus 935 ~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~ 1014 (1427)
+...... ......+..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7632111 12333444566889999999988777765 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1015 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1015 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 57788999999986 677777654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=366.59 Aligned_cols=282 Identities=18% Similarity=0.263 Sum_probs=207.7
Q ss_pred CCCcceeeecccccch-hhhHHHHHHhhhcCccCHHHHHHHHHHHHhhcCC----CCCccEEEEeeeEEEEEEecCCCcC
Q 000555 65 GGEAKTETIDVRKLNR-SRRELVVSKALATNDQDNYKLLSAIKERLDRVGI----EVPKVEVRFQNLKVVADVQTGSRAL 139 (1427)
Q Consensus 65 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~v~~~~l~~~~~~~~~~~~~ 139 (1427)
|.++.+++||.+.+.. +||..+|+++.....+++++++.+....+.+..- +.+..-++++|+++.
T Consensus 219 g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------- 288 (520)
T TIGR03269 219 GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKR---------- 288 (520)
T ss_pred CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHhhchhhccccccCCCCceEEEeccEEE----------
Confidence 5567778899998865 8999999998877777888776653222211110 000111222332221
Q ss_pred CchhHHhHHHHHHHhhhccccCC--ccccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEC
Q 000555 140 PTLVNATRDVFERILTGLRIFKP--KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYN 217 (1427)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~ 217 (1427)
+. +...+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++
T Consensus 289 ---------------------~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~ 344 (520)
T TIGR03269 289 ---------------------YISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVR 344 (520)
T ss_pred ---------------------eccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEe
Confidence 11 112246999999999999999999999999999999999999875 8999996
Q ss_pred -Cee---cCcc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHH
Q 000555 218 -GYK---LDEF------HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287 (1427)
Q Consensus 218 -G~~---~~~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 287 (1427)
|.+ +... ..++.++|++|++.+++.+||+||+.+...+ ... ..+
T Consensus 345 ~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~-----------~~~-------------- 398 (520)
T TIGR03269 345 VGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELP-----------DEL-------------- 398 (520)
T ss_pred cCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCC-----------HHH--------------
Confidence 532 2211 1245699999998888999999999875322 100 000
Q ss_pred HhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHH
Q 000555 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVK 367 (1427)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~ 367 (1427)
.+.+++.+++.+||+.......-++.+..|||||||||+||+||+.+|++|||||||+|||+.+...+.+
T Consensus 399 ----------~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~ 468 (520)
T TIGR03269 399 ----------ARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH 468 (520)
T ss_pred ----------HHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0113567889999964100001244566799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHHH
Q 000555 368 CLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 368 ~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 417 (1427)
.|++++++.++|||++. |...++.++||++++|++|+++..|+++++.+
T Consensus 469 ~l~~l~~~~g~tvi~vs-Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 469 SILKAREEMEQTFIIVS-HDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHcCcEEEEEe-CCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99998776688998864 55678889999999999999999999888754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=326.75 Aligned_cols=219 Identities=22% Similarity=0.297 Sum_probs=174.1
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCC---CCceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK---TGGYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 902 (1427)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|.. .+.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 478899987652 245899999999999999999999999999999999952 2112479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 977 (1427)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ....+...+.++++++.+++.+....... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988887 699999988654321 11222344567889999998642211111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4799999999986 46788999999986 68
Q ss_pred EEEccCC
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~g~~ 1064 (1427)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 8888864
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=329.63 Aligned_cols=216 Identities=28% Similarity=0.392 Sum_probs=177.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 57788887652 2468999999999999999999999999999999999765 35799999998754
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHh-ccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 907 Q---STFARISGYVEQNDIHSPQVTVEESLWFSAN-LRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
. ...++.++|++|++.+++.+||+||+.+... .+........+..+.+.++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 2334568999999877888999999987521 100000111233456888999999987777765 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++|.|||+++|+++ .+.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999986 57788999999986 5777877
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
+.
T Consensus 220 ~~ 221 (256)
T TIGR03873 220 PP 221 (256)
T ss_pred CH
Confidence 65
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.18 Aligned_cols=205 Identities=20% Similarity=0.363 Sum_probs=170.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-----cccceEEEEccCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNHIP 241 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~ 241 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 46999999999999999999999999999999999999875 99999999987542 23567999999988888
Q ss_pred CCCHHHHHHHHHHh-cCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 242 ELTVRETFDFAARW-QGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
.+||+||+.++... .+. ... .....++++++.+||+...+
T Consensus 91 ~~tv~~~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~~l~~~gl~~~~~---- 131 (240)
T PRK09493 91 HLTALENVMFGPLRVRGA-----------SKE------------------------EAEKQARELLAKVGLAERAH---- 131 (240)
T ss_pred CCcHHHHHHhHHHHhcCC-----------CHH------------------------HHHHHHHHHHHHcCChHHHh----
Confidence 99999999886421 111 000 00113567888999975433
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
+.++.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++.|+ .+++.++||++++
T Consensus 132 -~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~-~~~~~~~~d~i~~ 208 (240)
T PRK09493 132 -HYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHE-IGFAEKVASRLIF 208 (240)
T ss_pred -cChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhCCEEEE
Confidence 34567999999999999999999999999999999999999999999999865 48899887555 5677889999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|++++.|+.+++.
T Consensus 209 l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 209 IDKGRIAEDGDPQVLI 224 (240)
T ss_pred EECCEEEeeCCHHHHh
Confidence 9999999999988764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=323.73 Aligned_cols=212 Identities=29% Similarity=0.436 Sum_probs=178.3
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 5778876552 2469999999999999999999999999999999999865 357999999987643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000555 908 S-TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKR 986 (1427)
Q Consensus 908 ~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqr 986 (1427)
. ..++.++|++|++.+++..|+.||+.+....+ ..+.....+.++++++.+++.+..++.. ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 23467999999999999999999998765432 1223334456789999999987777765 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 987 l~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
++||++|+++|++++|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998765 899999999975 46788999999986 677887774
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=294.61 Aligned_cols=200 Identities=30% Similarity=0.422 Sum_probs=176.8
Q ss_pred ceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcccccceEEEEccCCCCCCCCCHHH
Q 000555 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEE 931 (1427)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 931 (1427)
..+|+|+|++|.+||.++++||||||||||||+++|..++ ..|+|.+||.+++...- .-|.|+|++.++|.+||.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 4589999999999999999999999999999999998773 58999999998764322 2488999999999999999
Q ss_pred HHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000555 932 SLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011 (1427)
Q Consensus 932 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~ 1011 (1427)
|+.|+..++ .+++.++.+.+.+.+..+||.+..+..+ -.||||||||+.|||||+.+|+.|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999887 5788899999999999999999887766 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEec-CcEEEEccCC
Q 000555 1012 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYGGKL 1064 (1427)
Q Consensus 1012 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~g~~ 1064 (1427)
-+++.++++|-++.+ +|+.++++||+.. +..-.+++++||+. -|+++..=|+
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999988764 6999999999976 44446799999984 2567766555
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=335.72 Aligned_cols=221 Identities=19% Similarity=0.271 Sum_probs=179.1
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC-c-eeEEEEEECCc
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG-G-YIEGDIKISGY 903 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~-~-~~~G~i~i~g~ 903 (1427)
.++++|+++.+..+ .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + ..+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 36899998776421 1124699999999999999999999999999999999997542 2 35799999998
Q ss_pred cCCcc---c----ccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc---ccccc
Q 000555 904 PKEQS---T----FARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL---RDALV 971 (1427)
Q Consensus 904 ~~~~~---~----~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~v 971 (1427)
++... . .++.++||+|++ .+.|.+|+.+++....... .....++..+.+.++++.++|.+. .+..
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~- 150 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPASRLDVY- 150 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhCC-
Confidence 76431 1 123699999997 4789999999886654322 123445566778999999999753 3333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEE
Q 000555 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELL 1050 (1427)
Q Consensus 972 g~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~ 1050 (1427)
+..||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++||+++ .+.+.+|+|+
T Consensus 151 ----p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~ 225 (326)
T PRK11022 151 ----PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKII 225 (326)
T ss_pred ----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 358999999999999999999999999999999999999999999999976 5899999999976 4667899999
Q ss_pred EEecCcEEEEccCC
Q 000555 1051 LMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1051 ~l~~gg~~~~~g~~ 1064 (1427)
+|.+ |+++..|+.
T Consensus 226 vm~~-G~ive~g~~ 238 (326)
T PRK11022 226 VMYA-GQVVETGKA 238 (326)
T ss_pred EEEC-CEEEEECCH
Confidence 9986 688888875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=335.90 Aligned_cols=225 Identities=26% Similarity=0.301 Sum_probs=182.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+....... + ..+...+|+|||++|++||++||+|+||||||||+++|+|.... .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~--~-~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF--K-PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc--c-cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 478999997774321100 0 01235799999999999999999999999999999999998653 579999999876
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000555 906 EQS------TFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-LRDALVGFPGS 976 (1427)
Q Consensus 906 ~~~------~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 976 (1427)
... .+++.++||+|++ .+.|.+||.+++....... ......+..+.+.++++.++|.+ ..+...
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p----- 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRYP----- 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCCC-----
Confidence 431 3456799999997 5889999999987654332 12344556677899999999963 455554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
..||||||||++|||||+.+|++|++||||++||..++..+++.|+++.++ |.|||++||+++ .+...+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 589999999999999999999999999999999999999999999999764 999999999975 45668999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 688888875
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=360.41 Aligned_cols=221 Identities=22% Similarity=0.306 Sum_probs=184.1
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++++++ ++.+|+||||++++||+++|+||||||||||+++|+|...+++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378999987662 3469999999999999999999999999999999999765323589999999876
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQST----FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~~~----~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.... .++.+|||+|++.+++.+||+||+.+....+.....+.++..+.++++++.+++.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 4321 24569999999989999999999988654321111223344566889999999988777776 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
|||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|++. .+.+.+|++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999975 46678999999986 678888
Q ss_pred cCCCC
Q 000555 1062 GKLGV 1066 (1427)
Q Consensus 1062 g~~~~ 1066 (1427)
|+...
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 87653
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=341.33 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=174.5
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc----CCc---cc---c-cceEEEEc
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KEQ---ST---F-ARISGYVE 918 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~----~~~---~~---~-~~~~gyv~ 918 (1427)
+...+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+ ... .. + ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34568999999999999999999999999999999999865 357999999962 211 11 2 24799999
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000555 919 QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPS 998 (1427)
Q Consensus 919 Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~ 998 (1427)
|++.++|.+||+||+.|+...+ ..+.+++.+.++++++.++|.+..+..+ ..||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886442 2345566678899999999998888776 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 999 illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999764 899999999986 57788999999986 678888875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=323.12 Aligned_cols=196 Identities=22% Similarity=0.361 Sum_probs=161.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------cc-ceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQ-RTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~yv~Q~~~~ 239 (1427)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .+ +.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999875 999999999875432 12 579999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++.+||+||+.+........ ..+ ....++++++.+||++..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~l~~~~~--- 136 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS-----------VKE------------------------AKERAYEMLEKVGLEHRIN--- 136 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC-----------HHH------------------------HHHHHHHHHHHcCChhhhh---
Confidence 88999999999864322110 000 0112566888999975433
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
+.+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++++.++|+|++.|++ .++ +.+|+++
T Consensus 137 --~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~-~~~d~v~ 212 (221)
T TIGR02211 137 --HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELA-KKLDRVL 212 (221)
T ss_pred --CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-hhcCEEE
Confidence 345679999999999999999999999999999999999999999999998765688999876664 444 5589999
Q ss_pred EEeCCeEE
Q 000555 400 LLSEGHLV 407 (1427)
Q Consensus 400 lL~~G~iv 407 (1427)
+|++|+++
T Consensus 213 ~l~~G~i~ 220 (221)
T TIGR02211 213 EMKDGQLF 220 (221)
T ss_pred EEeCCEec
Confidence 99999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=328.57 Aligned_cols=216 Identities=25% Similarity=0.312 Sum_probs=175.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|++|+|||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 589999988663 24589999999999999999999999999999999997542 13579999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL----RDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++. ||.||+.+....+.. ..+..+..+.++++++.+++.+. .+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87642 2345679999999888875 999999987543211 11223334567889999999642 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+...+|++++|+
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 789999999976 4667899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 6 678887764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=318.58 Aligned_cols=198 Identities=24% Similarity=0.338 Sum_probs=166.2
Q ss_pred eccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc-ccccceEEEEccCCCCCCCCCHHHH
Q 000555 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFARISGYVEQNDIHSPQVTVEES 932 (1427)
Q Consensus 854 iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 932 (1427)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|++||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3579999999999999999999999999999999865 357999999987643 2345679999999999999999999
Q ss_pred HHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000555 933 LWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1427)
Q Consensus 933 l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~ 1012 (1427)
+.+...... . ...+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987542211 1 11223456788999999988777765 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccC
Q 000555 1013 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 1013 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~ 1063 (1427)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999975 46678999999986 67776653
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=357.26 Aligned_cols=123 Identities=25% Similarity=0.358 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEE
Q 000555 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL-RDALVGFPGSSGLSTEQRKRLTIAVELVANP---SIIF 1001 (1427)
Q Consensus 926 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p---~ill 1001 (1427)
.+||.|++.|...+. . .....+.++.++|... .+..+ ..||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988875442 1 1224578899999763 45544 479999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCcEEEEccCC
Q 000555 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYGGKL 1064 (1427)
Q Consensus 1002 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~g~~ 1064 (1427)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ....+|+++.|. +||++++.|+.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999974 456799999994 57899999875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=324.10 Aligned_cols=210 Identities=24% Similarity=0.281 Sum_probs=169.1
Q ss_pred eeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-CCceeEEEECCeecCcccc-cceEEEEccCCC--CCCCCC
Q 000555 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS-LKKSGNITYNGYKLDEFHV-QRTSAYISQTDN--HIPELT 244 (1427)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~--~~~~lT 244 (1427)
+|+|+|+++++|++++|+||||||||||+++|+|.++|. .+.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999999871 0138999999998764433 357999999974 556789
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
+.|++.+.....+.. .. ....+++++++.+||++. +...+..+
T Consensus 81 ~~~~~~~~~~~~~~~----------~~-------------------------~~~~~~~~~l~~~~l~~~--~~~~~~~~ 123 (230)
T TIGR02770 81 MGNHAIETLRSLGKL----------SK-------------------------QARALILEALEAVGLPDP--EEVLKKYP 123 (230)
T ss_pred HHHHHHHHHHHcCcc----------HH-------------------------HHHHHHHHHHHHcCCCch--HHHHhCCh
Confidence 999998754322110 00 001235678899999732 11234456
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++.++.++|+|++.| ..+++..++|++++|++|
T Consensus 124 ~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH-~~~~~~~~~d~i~~l~~G 202 (230)
T TIGR02770 124 FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH-DLGVVARIADEVAVMDDG 202 (230)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999987655889998755 456788899999999999
Q ss_pred eEEEecChHHHH
Q 000555 405 HLVYQGPRAEVL 416 (1427)
Q Consensus 405 ~iv~~G~~~~~~ 416 (1427)
+++..|+++++.
T Consensus 203 ~i~~~~~~~~~~ 214 (230)
T TIGR02770 203 RIVERGTVKEIF 214 (230)
T ss_pred EEEEeCCHHHHH
Confidence 999999998875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=323.51 Aligned_cols=201 Identities=29% Similarity=0.464 Sum_probs=169.0
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc--ccccceEEEEc-cCCCCCCC
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ--STFARISGYVE-QNDIHSPQ 926 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~~~~~~~ 926 (1427)
+.+++|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34679999999999999999999999999999999999765 357999999986432 23456799997 55677889
Q ss_pred CCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000555 927 VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1006 (1427)
Q Consensus 927 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPT 1006 (1427)
+|++|++.+...+. ....++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865442 2233444556788999999988888776 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 1007 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 1007 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
+|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999975 56778999999986 5776654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=318.32 Aligned_cols=189 Identities=24% Similarity=0.402 Sum_probs=162.1
Q ss_pred ceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC---c----ccccceEEEEccCCCCC
Q 000555 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE---Q----STFARISGYVEQNDIHS 924 (1427)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~~~~~ 924 (1427)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 468999999999999999999999999999999999865 35799999998742 1 12356799999999999
Q ss_pred CCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000555 925 PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDE 1004 (1427)
Q Consensus 925 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDE 1004 (1427)
+..|++||+.+..... .....+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 2233444567889999999988777765 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEE
Q 000555 1005 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1052 (1427)
Q Consensus 1005 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1052 (1427)
||+|||+.+...+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777899999999975 45679999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=325.41 Aligned_cols=219 Identities=22% Similarity=0.299 Sum_probs=174.3
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC-ceeEEEEEECCccC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPK 905 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 905 (1427)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.... .+.+|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 67888887663 24689999999999999999999999999999999997531 24579999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
.. ..+++.++|++|++.+++ .|++||+.+....+... .......+.++++++.+++.+....... .....||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHH
Confidence 43 234567999999998887 69999998865432110 0122334567889999999532111111 123579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999975 46778999999986 6788777
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 64
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=318.75 Aligned_cols=169 Identities=25% Similarity=0.350 Sum_probs=134.1
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHh
Q 000555 859 SGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSAN 938 (1427)
Q Consensus 859 s~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~ 938 (1427)
.++|..||+++++||||-||||+.++|+|..++ .+|+ .. .-.++|=||--.--.+.||++-|.-...
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhhh
Confidence 577888999999999999999999999997653 3454 11 1236888887555578899997754332
Q ss_pred ccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 000555 939 LRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018 (1427)
Q Consensus 939 l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~ 1018 (1427)
-+.. ..-...++.+-|.|+.+.+..+ .+|||||.|||+||.+|.+++++.+||||++.||.+.+..+-
T Consensus 428 ~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 428 SAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred hhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 2111 1123467888899999998887 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 1019 RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 1019 ~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
++||+... +++|.+++-||.-. +--..||++|..
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 99999875 47899999999653 222468888885
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=334.46 Aligned_cols=206 Identities=24% Similarity=0.347 Sum_probs=169.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-------cccceEEEEccCCC-
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-------HVQRTSAYISQTDN- 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~~- 238 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 46999999999999999999999999999999999999986 99999999987431 23457999999862
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
.+..+||+||+.|+....+.. .. +...+++++++.+||+. .
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~gL~~----~ 137 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS-----------ED------------------------EAKEKALKWLKKVGLSE----D 137 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHHcCCCh----h
Confidence 344689999999865432110 00 00123567889999952 1
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
..++.++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .|.|||++ +|...++.++||++
T Consensus 138 ~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvliv-sH~~~~~~~~~d~v 215 (287)
T PRK13641 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILV-THNMDDVAEYADDV 215 (287)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHHhCCEE
Confidence 23445667999999999999999999999999999999999999999999999864 48899886 45567788999999
Q ss_pred EEEeCCeEEEecChHHHH
Q 000555 399 LLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~ 416 (1427)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999998875
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=371.38 Aligned_cols=215 Identities=28% Similarity=0.448 Sum_probs=176.7
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+||+|.++. ++++|+|+|++++|||++||+||||||||||++.|.|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 45999999998752 45789999999999999999999999999999999998763 58999999988
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHH-HH--HcCCcccccccccCCCCCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEV-MR--LVELDSLRDALVGFPGSSG 978 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~-l~--~l~L~~~~~~~vg~~~~~~ 978 (1427)
++. ..+|+.++||+|++.+|. -||+||+.++.. +.++++..+.++.+ +. ..++.+..||.+| +++.+
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg-e~G~~ 465 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIANLPDGYDTIVG-ERGVN 465 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCcccccceec-CCCcc
Confidence 654 567889999999999987 899999998631 23444333222222 00 1133445789998 44567
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEE
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058 (1427)
Q Consensus 979 LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1058 (1427)
||||||||++||||++++|+||+||||||+||+.++..|++.++++. +++|+++++|+++ ....+|+|++|++ |++
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~-G~i 541 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN-GRI 541 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999876 5789999999986 4556999999987 578
Q ss_pred EEccCC
Q 000555 1059 IYGGKL 1064 (1427)
Q Consensus 1059 ~~~g~~ 1064 (1427)
+..|+.
T Consensus 542 ~e~G~h 547 (567)
T COG1132 542 VERGTH 547 (567)
T ss_pred EEecCH
Confidence 888875
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=293.41 Aligned_cols=203 Identities=26% Similarity=0.388 Sum_probs=175.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVR 246 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1427)
..+|+|+|+.|.+||.++++||||||||||||+++|..+|. .|+|.+||++++.. -..-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 56999999999999999999999999999999999999986 89999999988643 23459999999999999999
Q ss_pred HHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCC
Q 000555 247 ETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG 326 (1427)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 326 (1427)
||++|+.+++|..+. .| ..++.+.+..+||+... ++++-.
T Consensus 93 dNvafgL~l~Gi~k~--------~R---------------------------~~~a~q~l~~VgL~~~~-----~~~i~q 132 (259)
T COG4525 93 DNVAFGLQLRGIEKA--------QR---------------------------REIAHQMLALVGLEGAE-----HKYIWQ 132 (259)
T ss_pred HHHHHHHHhcCCCHH--------HH---------------------------HHHHHHHHHHhCccccc-----ccceEe
Confidence 999999999886321 01 12356788999998644 455567
Q ss_pred CChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe--CC
Q 000555 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS--EG 404 (1427)
Q Consensus 327 LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~--~G 404 (1427)
|||||||||.|||||..+|+.|+||||+++||.-+++++.+.|-++.+..|+.++++ +|...|..-+++++++|+ .|
T Consensus 133 LSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lli-TH~ieEAlflatrLvvlsp~pg 211 (259)
T COG4525 133 LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI-THDIEEALFLATRLVVLSPGPG 211 (259)
T ss_pred ecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEE-eccHHHHHhhhheeEEecCCCc
Confidence 999999999999999999999999999999999999999999998888889998885 567788888999999998 57
Q ss_pred eEEEecChHHH
Q 000555 405 HLVYQGPRAEV 415 (1427)
Q Consensus 405 ~iv~~G~~~~~ 415 (1427)
+|+..=+++-.
T Consensus 212 Rvv~~~~~df~ 222 (259)
T COG4525 212 RVVERLPLDFA 222 (259)
T ss_pred eeeEecCCCHH
Confidence 99987666533
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=363.72 Aligned_cols=211 Identities=23% Similarity=0.381 Sum_probs=175.1
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+||+|+++. ++++|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEE
Confidence 36899999998741 2468999999999999999999999999999999999866 357999999987
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 974 (1427)
..+ ..+++.+|||+|++.+++. |++||+.++.. .+.+++ .+.++++..++.+ -.|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQD----EIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCCHH----HHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 643 4578899999999988864 99999987521 123332 3455666655543 357778754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ +|+|+|+++|+++ ..+.+|+|++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4679999999999999999999999999999999999999999999875 4799999999975 5678999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 688888874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=363.21 Aligned_cols=210 Identities=30% Similarity=0.415 Sum_probs=175.1
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++++||+|+++. .++++|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 46999999998752 235689999999999999999999999999999999998663 57999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 974 (1427)
.++ ..+++.+|||+|++.+++ .|++||+.++. .+.+++ .+.++++..++.+ -.|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPDA----DLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCHH----HHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 643 457889999999998885 69999997641 123333 3556666666543 356777754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|+|++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999986 4899999999975 5677999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 688888875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=328.71 Aligned_cols=215 Identities=27% Similarity=0.348 Sum_probs=179.1
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4789999876631 12358999999999999999999999999999999999865 3579999999876
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.++|++|++. +++..|+.+|+.+..... ....++..+.++++++.+++.+..+..+ ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567999999974 678889999998864322 1233444566889999999988777665 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 354 4999999986 68888
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 223 ~g~~ 226 (269)
T PRK13648 223 EGTP 226 (269)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=335.35 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=181.1
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc-eeEEEEEECCcc
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 904 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 904 (1427)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47999998766421 12356999999999999999999999999999999999976531 237999999987
Q ss_pred CCcc---c---cc-ceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000555 905 KEQS---T---FA-RISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG 975 (1427)
Q Consensus 905 ~~~~---~---~~-~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 975 (1427)
+... . ++ +.++||+|++ .+.|.+|+.+++....... ...+.++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH--KGMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 6431 1 22 4799999998 6889999999987654432 1234455567788999999997543221 1 23
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+.+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999764 899999999976 46678999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 688888875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=322.69 Aligned_cols=202 Identities=26% Similarity=0.328 Sum_probs=167.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 36999999999999999999999999999999999999875 999999998875432 24579999999988999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhC-Ccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLG-LDLCSETVVGN 321 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~ 321 (1427)
+||+||+.++....+.. . ....+.+++.++ ++. ..+
T Consensus 90 ~tv~~~l~~~~~~~~~~-----------~---------------------------~~~~~~~l~~~~~l~~-----~~~ 126 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR-----------S---------------------------RKIPDEIYELFPVLKE-----MLG 126 (230)
T ss_pred CcHHHHHHHHHHhcCcc-----------h---------------------------HHHHHHHHHHHHhHHH-----Hhh
Confidence 99999998865332110 0 011344566665 333 234
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
+.++.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++.++.++|+|++.|+ ..++.++||++++|
T Consensus 127 ~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~v~~l 205 (230)
T TIGR03410 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY-LDFARELADRYYVM 205 (230)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC-HHHHHHhCCEEEEE
Confidence 45667999999999999999999999999999999999999999999999876558899987555 56788899999999
Q ss_pred eCCeEEEecChHHH
Q 000555 402 SEGHLVYQGPRAEV 415 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~ 415 (1427)
++|++++.|+.+++
T Consensus 206 ~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 206 ERGRVVASGAGDEL 219 (230)
T ss_pred ECCEEEEECCHHHc
Confidence 99999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=320.04 Aligned_cols=216 Identities=23% Similarity=0.324 Sum_probs=179.2
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-C-CCCceeEEEECCeecCccc-------ccceEEEEccC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLD-S-SLKKSGNITYNGYKLDEFH-------VQRTSAYISQT 236 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~-~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~ 236 (1427)
..++++||||++++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-... ..+.|+||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 4 3346799999999764332 12579999999
Q ss_pred C--CCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccc
Q 000555 237 D--NHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLC 314 (1427)
Q Consensus 237 ~--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 314 (1427)
+ .+-|.+||.+.+.-..+..... .++ ++...++.++|+.+||++-
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~---------~~~------------------------~ea~~~a~~~L~~Vgi~~~ 143 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKG---------LSK------------------------KEAKERAIELLELVGIPDP 143 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcc---------hhh------------------------HHHHHHHHHHHHHcCCCCH
Confidence 6 4788899998887654432110 000 0112346778999999853
Q ss_pred cccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhh
Q 000555 315 SETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL 394 (1427)
Q Consensus 315 ~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~ 394 (1427)
. .+.+.++.+|||||||||.||.||+.+|++|+.|||||+||..++.+|++.|+++.++.|.++|+ ++|+..-+.++
T Consensus 144 ~--~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiil-ITHDl~vva~~ 220 (316)
T COG0444 144 E--RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALIL-ITHDLGVVAEI 220 (316)
T ss_pred H--HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHh
Confidence 2 35577888999999999999999999999999999999999999999999999999888999988 46778889999
Q ss_pred cCcEEEEeCCeEEEecChHHHHH
Q 000555 395 FDDLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 395 ~D~vilL~~G~iv~~G~~~~~~~ 417 (1427)
||||+||+.|+||+.|+.+++..
T Consensus 221 aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 221 ADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred cceEEEEECcEEEEeCCHHHHhc
Confidence 99999999999999999998853
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=330.87 Aligned_cols=219 Identities=24% Similarity=0.329 Sum_probs=179.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++... +...+.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 378999988764210 0013469999999999999999999999999999999999865 3579999999876
Q ss_pred Cc----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 906 EQ----STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 906 ~~----~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
.. ...++.+||++|++. .+...||.|++.|..... ..+..+..+.++++++.++|.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 234677999999974 233469999998875322 2334455567899999999998888776 4899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1059 (1427)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999976 4999999999986 344 4999999986 6788
Q ss_pred EccCC
Q 000555 1060 YGGKL 1064 (1427)
Q Consensus 1060 ~~g~~ 1064 (1427)
..|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 88875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=341.65 Aligned_cols=196 Identities=24% Similarity=0.391 Sum_probs=169.1
Q ss_pred CeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-------cccceEEEEccCCCCCCCCC
Q 000555 172 DVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-------HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~~~~~~lT 244 (1427)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++||+|++.+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999876 99999999887431 23568999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.|+.+.. ...+++++++.+||++..+ +.+
T Consensus 93 v~enl~~~~~~~-----------------------------------------~~~~~~~~l~~~gl~~~~~-----~~~ 126 (352)
T PRK11144 93 VRGNLRYGMAKS-----------------------------------------MVAQFDKIVALLGIEPLLD-----RYP 126 (352)
T ss_pred HHHHHHhhhhhh-----------------------------------------hHHHHHHHHHHcCCchhhh-----CCc
Confidence 999998853200 0113567889999975444 345
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++. |...++.++||++++|++|
T Consensus 127 ~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vT-Hd~~~~~~~~d~i~~l~~G 205 (352)
T PRK11144 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVS-HSLDEILRLADRVVVLEQG 205 (352)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEe-cCHHHHHHhCCEEEEEeCC
Confidence 679999999999999999999999999999999999999999999999876688998865 4557889999999999999
Q ss_pred eEEEecChHHHHH
Q 000555 405 HLVYQGPRAEVLE 417 (1427)
Q Consensus 405 ~iv~~G~~~~~~~ 417 (1427)
+++..|+++++..
T Consensus 206 ~i~~~g~~~~i~~ 218 (352)
T PRK11144 206 KVKAFGPLEEVWA 218 (352)
T ss_pred EEEEecCHHHHHh
Confidence 9999999998853
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=328.80 Aligned_cols=218 Identities=25% Similarity=0.370 Sum_probs=176.3
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc------eeEEEEEE
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG------YIEGDIKI 900 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~------~~~G~i~i 900 (1427)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 57888887652 346899999999999999999999999999999999976531 12799999
Q ss_pred CCccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCC-cCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000555 901 SGYPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976 (1427)
Q Consensus 901 ~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 976 (1427)
+|.+... ..+++.++|++|++..++.+||+||+.+....... ......+..+.++++++.+++.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9987542 23455689999998766679999999875321100 01111233456788999999987776654
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhh
Q 000555 977 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1046 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~---------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 1046 (1427)
..||||||||++||++|+ .+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998765 899999999976 466789
Q ss_pred ceEEEEecCcEEEEccCC
Q 000555 1047 DELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1047 D~v~~l~~gg~~~~~g~~ 1064 (1427)
|++++|++ |+++..|+.
T Consensus 223 d~i~~l~~-G~i~~~g~~ 239 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAP 239 (272)
T ss_pred CEEEEEEC-CeEEEecCH
Confidence 99999986 678888875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=332.59 Aligned_cols=219 Identities=22% Similarity=0.325 Sum_probs=176.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++++++... .....+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 478999988763210 001358999999999999999999999999999999999865 3579999999875
Q ss_pred Cc--------ccccceEEEEccCCCC-CCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000555 906 EQ--------STFARISGYVEQNDIH-SPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPG 975 (1427)
Q Consensus 906 ~~--------~~~~~~~gyv~Q~~~~-~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 975 (1427)
.. ..+++.++|++|++.. +...||+||+.+..... ....++..+.++++++.++|. +..+..+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 31 2345679999999732 23469999998864321 123344445678899999994 5666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999876 4899999999976 57788999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 677777764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=336.35 Aligned_cols=209 Identities=17% Similarity=0.248 Sum_probs=174.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc------cccceEEEEccCC--C
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF------HVQRTSAYISQTD--N 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~~~~~~~yv~Q~~--~ 238 (1427)
+++|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 57999999999999999999999999999999999999875 89999999987543 2356799999997 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
+.+.+||.+++.+....... ..+. +...++.++++.+||+..
T Consensus 105 l~p~~~v~~~l~~~~~~~~~----------~~~~------------------------~~~~~~~~~l~~~gL~~~---- 146 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS----------LSAA------------------------ERREKALAMMAKVGLRPE---- 146 (327)
T ss_pred cCCccCHHHHHHHHHHHccC----------CCHH------------------------HHHHHHHHHHHHCCCChH----
Confidence 78889999999876443210 0000 011236778999999631
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
.-++.++.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.++.|.|+|++ +|+...+.+++|+|
T Consensus 147 ~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~i-THdl~~~~~~adrv 225 (327)
T PRK11308 147 HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFI-SHDLSVVEHIADEV 225 (327)
T ss_pred HhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEE
Confidence 22455678999999999999999999999999999999999999999999999977778899886 56667788899999
Q ss_pred EEEeCCeEEEecChHHHHH
Q 000555 399 LLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~~ 417 (1427)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999998853
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=324.49 Aligned_cols=220 Identities=22% Similarity=0.305 Sum_probs=176.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--Cc-eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478999987663 2458999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 977 (1427)
.++.. ..+++.++|++|+..+++.+|++||+.+..... ...+..+..+.++++++.+++......... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87632 234677999999999999999999998764322 111223334567888999998642111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999975 56788999999986 68
Q ss_pred EEEccCC
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~g~~ 1064 (1427)
+...|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 8887764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=326.58 Aligned_cols=201 Identities=25% Similarity=0.383 Sum_probs=166.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVR 246 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1427)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHH
Confidence 36999999999999999999999999999999999999875 9999999998753 234689999998888889999
Q ss_pred HHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCC
Q 000555 247 ETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG 326 (1427)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 326 (1427)
||+.++....+.. ..+ ....++++++.+||++..+. .+..
T Consensus 89 e~l~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~gl~~~~~~-----~~~~ 128 (255)
T PRK11248 89 DNVAFGLQLAGVE-----------KMQ------------------------RLEIAHQMLKKVGLEGAEKR-----YIWQ 128 (255)
T ss_pred HHHHhHHHHcCCC-----------HHH------------------------HHHHHHHHHHHcCChhHhhC-----Chhh
Confidence 9998864432210 000 01135678899999754443 4567
Q ss_pred CChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe--CC
Q 000555 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS--EG 404 (1427)
Q Consensus 327 LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~--~G 404 (1427)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++++.|+|+|++. |...++.++||+|++|+ +|
T Consensus 129 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivs-H~~~~~~~~~d~i~~l~~~~G 207 (255)
T PRK11248 129 LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT-HDIEEAVFMATELVLLSPGPG 207 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEeCCCc
Confidence 9999999999999999999999999999999999999999999998655588998865 45567889999999998 59
Q ss_pred eEEEecChH
Q 000555 405 HLVYQGPRA 413 (1427)
Q Consensus 405 ~iv~~G~~~ 413 (1427)
+++..++.+
T Consensus 208 ~i~~~~~~~ 216 (255)
T PRK11248 208 RVVERLPLN 216 (255)
T ss_pred EEEEEecCC
Confidence 999987754
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=333.63 Aligned_cols=220 Identities=20% Similarity=0.283 Sum_probs=177.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 902 (1427)
.++++|+++.+.. +.+.+|+|+|++|++||++||+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5899999987641 234689999999999999999999999999999999997531 23579999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHH-HHHHHHHHHHHcCCcccccccccCCCC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ-RHEFVEEVMRLVELDSLRDALVGFPGS 976 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~-~~~~v~~~l~~l~L~~~~~~~vg~~~~ 976 (1427)
.++.. ..+++.++||+|++.+++ .|++||+.|..... ..++++ ..+.++++++.++|.+..++.++. .+
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AG 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-Cc
Confidence 98742 235678999999998875 79999999864321 122222 234567888888875433334433 34
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
.+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999875 699999999975 46667999999986 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
+++..|+.
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 78887765
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=326.36 Aligned_cols=222 Identities=23% Similarity=0.283 Sum_probs=178.2
Q ss_pred CCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---ceeEEEEE
Q 000555 823 QPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIK 899 (1427)
Q Consensus 823 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~ 899 (1427)
.+..++++|++++++ .+++|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344689999988663 24689999999999999999999999999999999997542 13589999
Q ss_pred ECCccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000555 900 ISGYPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFP 974 (1427)
Q Consensus 900 i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 974 (1427)
++|.+... ...++.++|++|++.+++ .||+||+.+..... .....++..+.+.++++.++|.+..+.... .
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~ 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-K 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-C
Confidence 99987632 124567999999988887 69999998864321 112333445668889999998532222221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
.+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||+++|+++ ++.+.+|++++|++
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 235899999999999999999999999999999999999999999999985 4799999999986 57788999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 238 -G~i~~~g~~ 246 (267)
T PRK14237 238 -GDLIEYDKT 246 (267)
T ss_pred -CEEEEeCCH
Confidence 688888775
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=370.45 Aligned_cols=210 Identities=24% Similarity=0.394 Sum_probs=174.6
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+||++.+. +++++|+|+|++++|||++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999986442 1246899999999999999999999999999999999986 3 47999999988
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-------SLRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~ 974 (1427)
..+ ..+++.++||+|++.+++ .|++||+.++. .+.+++ .++++++..++. +-.||.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCHH----HHHHHHHHhCHHHHHHhcccccccccccC
Confidence 654 457889999999998886 59999998852 123433 345555555543 3457888865
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
| .+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|+++|+++ ..+.+|+|++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 4 5799999999999999999999999999999999999999999999875 5899999999975 5678999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 688888874
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=320.56 Aligned_cols=195 Identities=25% Similarity=0.363 Sum_probs=161.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc------cccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF------HVQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~~~~~~~yv~Q~~~~~ 240 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999875 99999999987542 1346799999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+.+||+||+.++....+.. .. ....+++++++.+||++..++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~~--- 132 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP-----------PR------------------------EIRKRVPAALELVGLSHKHRA--- 132 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHHcCCHHHhhC---
Confidence 9999999999875432210 00 001135678888999765444
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
.+.+||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++.|+ ..++.++||++++
T Consensus 133 --~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~-~~~~~~~~d~i~~ 208 (214)
T cd03292 133 --LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHA-KELVDTTRHRVIA 208 (214)
T ss_pred --ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhCCEEEE
Confidence 3457999999999999999999999999999999999999999999999865 48898887554 5677789999999
Q ss_pred EeCCeE
Q 000555 401 LSEGHL 406 (1427)
Q Consensus 401 L~~G~i 406 (1427)
|++|++
T Consensus 209 l~~G~~ 214 (214)
T cd03292 209 LERGKL 214 (214)
T ss_pred EeCCcC
Confidence 999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=356.97 Aligned_cols=212 Identities=27% Similarity=0.427 Sum_probs=176.8
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+||+|+++. .++++|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 36999999998842 234689999999999999999999999999999999998763 57999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-------SLRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~ 974 (1427)
.++ ..+++.++||+|++.+++ .|++||+.++. .+.+++ .+.++++..++. +-.||.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYADDE----EILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCCHH----HHHHHHHHcChHHHHHhCcccccceecCC
Confidence 654 457889999999998886 59999998652 123333 345566665554 3457778754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +++|+|+++|+++ ....+|+|++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 46799999999999999999999999999999999999999999999876 4799999999975 5678999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 688888874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=324.10 Aligned_cols=209 Identities=26% Similarity=0.363 Sum_probs=173.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 478899987652 2458999999999999999999999999999999999765 3579999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.++|++|++.+++ .||+||+.+....+ . .....++++++.+++. +..+..+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCH
Confidence 32 234567999999988876 69999988653321 1 1124577889999996 4555543 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||++||+||+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999976 46778999999986 57777
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 7654
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=329.63 Aligned_cols=217 Identities=25% Similarity=0.335 Sum_probs=179.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCce-eEEEEEECCcc
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYP 904 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~-~~G~i~i~g~~ 904 (1427)
.++++|+++.++. ..+.+|+|||++|++||+++|+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4789999886631 12458999999999999999999999999999999999765321 23899999988
Q ss_pred CCc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 905 KEQ---STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
... ...++.+||++|++. .++..||+||+.|..... ..+.++..+.++++++.++|.+..+..+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 643 234567999999974 677899999998764321 2344555667889999999988777765 5899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1059 (1427)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. + ..+|++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 8999999999863 4 57999999986 6788
Q ss_pred EccCC
Q 000555 1060 YGGKL 1064 (1427)
Q Consensus 1060 ~~g~~ 1064 (1427)
..|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 88875
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=331.65 Aligned_cols=213 Identities=24% Similarity=0.403 Sum_probs=174.8
Q ss_pred ccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCC
Q 000555 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIP 241 (1427)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~ 241 (1427)
.++++|+|+||.+.+|+-++|+||||||||||.|+|.|..+|. +|.|.+||-+++.. .+-+.|||.||+-.+|+
T Consensus 347 ~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~ 423 (580)
T COG4618 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD 423 (580)
T ss_pred CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC
Confidence 3468999999999999999999999999999999999999875 99999999887654 34588999999877776
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
-||.|||.= +. ++.|-++..+++...+ ++++ .+.|++.+||.||+
T Consensus 424 -GTIaeNIaR---f~-----------------------~~~d~~kIieAA~lAg------vHel--Il~lP~GYdT~iG~ 468 (580)
T COG4618 424 -GTIAENIAR---FG-----------------------EEADPEKVIEAARLAG------VHEL--ILRLPQGYDTRIGE 468 (580)
T ss_pred -CcHHHHHHh---cc-----------------------ccCCHHHHHHHHHHcC------hHHH--HHhCcCCccCccCC
Confidence 499999952 11 1111122222222111 2222 34689999999999
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
.+. +||||||||+++|||++++|.+++||||-|.||+.....+.+.|.+.. ..|.|+|+..|. +.+...+|+|++|
T Consensus 469 ~G~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHR--Ps~L~~~Dkilvl 544 (580)
T COG4618 469 GGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHR--PSALASVDKILVL 544 (580)
T ss_pred CCC-CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecC--HHHHhhcceeeee
Confidence 875 699999999999999999999999999999999999999999999975 457787776555 4789999999999
Q ss_pred eCCeEEEecChHHHHHHH
Q 000555 402 SEGHLVYQGPRAEVLEFF 419 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~~~f 419 (1427)
++|++-.+|+.+|++...
T Consensus 545 ~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 545 QDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cCChHHhcCCHHHHHHHh
Confidence 999999999999998754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=327.77 Aligned_cols=215 Identities=24% Similarity=0.290 Sum_probs=173.9
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---ceeEEEEEEC
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKIS 901 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 901 (1427)
..++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+. .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3589999987663 24589999999999999999999999999999999997542 1358999999
Q ss_pred CccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc----cccccccc
Q 000555 902 GYPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD----SLRDALVG 972 (1427)
Q Consensus 902 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg 972 (1427)
|.+... ..+++.++|++|++.+++ .||+||+.+....+. ... +..+.++++++.+++. +..+..+
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~- 152 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNESG- 152 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCCc-
Confidence 987531 234567999999998888 499999988764331 111 2234567788888764 2334333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEE
Q 000555 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1052 (1427)
Q Consensus 973 ~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1052 (1427)
..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|
T Consensus 153 ----~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 153 ----YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 57999999999999999999999999999999999999999999999854 789999999986 577889999999
Q ss_pred ec----------CcEEEEccCC
Q 000555 1053 KR----------GGRVIYGGKL 1064 (1427)
Q Consensus 1053 ~~----------gg~~~~~g~~ 1064 (1427)
++ +|++++.|+.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 85 2567887765
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=319.47 Aligned_cols=197 Identities=30% Similarity=0.463 Sum_probs=163.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEccCCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~lT 244 (1427)
.++|+|+|+++++| +++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 36999999999999 99999999999999999999999876 99999999876532 23567999999998899999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.+.....+.. +. + ....++.+++.+||++..++. +
T Consensus 89 v~~~l~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~-----~ 128 (211)
T cd03264 89 VREFLDYIAWLKGIP-----------SK----------E--------------VKARVDEVLELVNLGDRAKKK-----I 128 (211)
T ss_pred HHHHHHHHHHHhCCC-----------HH----------H--------------HHHHHHHHHHHCCCHHHHhCc-----h
Confidence 999999865432210 00 0 011356788899997655443 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ ++|+|++. |...++.+++|++++|++|
T Consensus 129 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vs-H~~~~~~~~~d~i~~l~~g 205 (211)
T cd03264 129 GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILST-HIVEDVESLCNQVAVLNKG 205 (211)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEc-CCHHHHHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999864 47888864 5556777899999999999
Q ss_pred eEEEec
Q 000555 405 HLVYQG 410 (1427)
Q Consensus 405 ~iv~~G 410 (1427)
++++.|
T Consensus 206 ~i~~~g 211 (211)
T cd03264 206 KLVFEG 211 (211)
T ss_pred EEEecC
Confidence 998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=310.92 Aligned_cols=190 Identities=53% Similarity=0.879 Sum_probs=161.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCC--CCceeEEEEEECCc
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK--TGGYIEGDIKISGY 903 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~--~~~~~~G~i~i~g~ 903 (1427)
.++++|+++.++.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 5789999987742100 01246999999999999999999999999999999999986 4 46899999999
Q ss_pred cCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000555 904 PKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983 (1427)
Q Consensus 904 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 983 (1427)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754445678999999999999999999997643110 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 984 rqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|++++|++ |++.+.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986557778999999986 5666543
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=324.90 Aligned_cols=206 Identities=21% Similarity=0.384 Sum_probs=170.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++.... .++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999875 899999999875432 24679999999988888
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.+..+.... .... .....++++++.+||+... +.
T Consensus 93 ~tv~enl~~~~~~~~~----------~~~~------------------------~~~~~~~~~l~~~~l~~~~-----~~ 133 (241)
T PRK10895 93 LSVYDNLMAVLQIRDD----------LSAE------------------------QREDRANELMEEFHIEHLR-----DS 133 (241)
T ss_pred CcHHHHHhhhhhcccc----------cCHH------------------------HHHHHHHHHHHHcCCHHHh-----hc
Confidence 9999999876432110 0000 0012356788889987533 44
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
..+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++.|+ ..++.++||++++|+
T Consensus 134 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~-~~~~~~~~d~v~~l~ 211 (241)
T PRK10895 134 MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHN-VRETLAVCERAYIVS 211 (241)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcC-HHHHHHhcCEEEEEe
Confidence 4567999999999999999999999999999999999999999999998864 58899987654 467889999999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (241)
T PRK10895 212 QGHLIAHGTPTEIL 225 (241)
T ss_pred CCeEEeeCCHHHHh
Confidence 99999999988764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=365.98 Aligned_cols=286 Identities=22% Similarity=0.296 Sum_probs=206.1
Q ss_pred CCCcceeeecccccch-hhhHHHHHHhhhcCccCHHHHHHH----HHHHHhhcCCCCCccEEEEeeeEEEEEEecCCCcC
Q 000555 65 GGEAKTETIDVRKLNR-SRRELVVSKALATNDQDNYKLLSA----IKERLDRVGIEVPKVEVRFQNLKVVADVQTGSRAL 139 (1427)
Q Consensus 65 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~v~~~~l~~~~~~~~~~~~~ 139 (1427)
|.++++++||++.+.. +||..+|+++....++.+++++.. ..+++.+. .|... . . ......
T Consensus 207 g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~----~--~----~~~~~~- 272 (529)
T PRK15134 207 NMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKLLNS---EPSGD----P--V----PLPEPA- 272 (529)
T ss_pred CCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhCCCCHHHHHHHHh---Ccccc----c--c----ccCCCC-
Confidence 5677778899998765 899999999988888788776531 01111110 01000 0 0 000000
Q ss_pred CchhHHhHHHHHHHhhhccccCCc--------cccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCce
Q 000555 140 PTLVNATRDVFERILTGLRIFKPK--------RHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKS 211 (1427)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~ 211 (1427)
+.+ ++ +.++...+++ ...+++|+|+|+++++|++++|+||||||||||+++|+|.++ . +
T Consensus 273 ~~~-------l~--~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~ 339 (529)
T PRK15134 273 SPL-------LD--VEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---Q 339 (529)
T ss_pred CCc-------cc--ccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---C
Confidence 000 00 1122221211 013579999999999999999999999999999999999984 3 8
Q ss_pred eEEEECCeecCccc------ccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChh
Q 000555 212 GNITYNGYKLDEFH------VQRTSAYISQTD--NHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283 (1427)
Q Consensus 212 G~V~~~G~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (1427)
|+|+++|+++.... .++.++|++|++ .+++.+||+||+.++....+. . ....
T Consensus 340 G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~--~-------~~~~----------- 399 (529)
T PRK15134 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP--T-------LSAA----------- 399 (529)
T ss_pred cEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc--c-------CChH-----------
Confidence 99999998875321 245699999986 477889999999986432210 0 0000
Q ss_pred HHHHHhhhhcCCCcccccHHHHHHHhCCc-cccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHH
Q 000555 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLD-LCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 362 (1427)
Q Consensus 284 ~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~ 362 (1427)
..+.+++++++.+||+ ... ++.+..|||||||||+||++|+.+|++|||||||+|||+.++
T Consensus 400 -------------~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 461 (529)
T PRK15134 400 -------------QREQQVIAVMEEVGLDPETR-----HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQ 461 (529)
T ss_pred -------------HHHHHHHHHHHHcCCCHHHH-----hcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHH
Confidence 0012356789999996 233 344567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHH
Q 000555 363 FQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 363 ~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~ 416 (1427)
..+.+.|++++++.++|||++ +|...++.++||+|++|++|+++.+|+.+++.
T Consensus 462 ~~l~~~l~~~~~~~~~tvi~v-sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 462 AQILALLKSLQQKHQLAYLFI-SHDLHVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred HHHHHHHHHHHHhhCCEEEEE-eCCHHHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 999999999987668899886 56667888999999999999999999998874
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=330.67 Aligned_cols=206 Identities=24% Similarity=0.347 Sum_probs=170.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc----cccceEEEEccCCC-CCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF----HVQRTSAYISQTDN-HIP 241 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~~~-~~~ 241 (1427)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999876 99999999987542 23567999999863 344
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
..||.||+.|+....+.. .. + ....++++++.+||+...++.
T Consensus 100 ~~~v~~~l~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~--- 141 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP-----------PE----------E--------------IRERVDESLKKVGMYEYRRHA--- 141 (280)
T ss_pred cccHHHHHHhhHhhcCCC-----------HH----------H--------------HHHHHHHHHHHCCCHhHhhCC---
Confidence 569999999875432210 00 0 012367789999997655544
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.++.+.|||++.|++ .++.. ||++++|
T Consensus 142 --~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~-~~~~~-~d~v~~l 217 (280)
T PRK13633 142 --PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM-EEAVE-ADRIIVM 217 (280)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHhc-CCEEEEE
Confidence 4579999999999999999999999999999999999999999999998765689999976665 45544 9999999
Q ss_pred eCCeEEEecChHHHHH
Q 000555 402 SEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~~ 417 (1427)
++|+++++|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 218 DSGKVVMEGTPKEIFK 233 (280)
T ss_pred ECCEEEEecCHHHHhc
Confidence 9999999999998753
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=320.56 Aligned_cols=199 Identities=29% Similarity=0.399 Sum_probs=170.2
Q ss_pred eccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcc-cccceEEEEccCCCCCCCCCHHHH
Q 000555 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS-TFARISGYVEQNDIHSPQVTVEES 932 (1427)
Q Consensus 854 iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~ 932 (1427)
+|+|+|++|+|||+++|+|+||||||||+++|+|... +.+|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999765 3579999999876431 234679999999999999999999
Q ss_pred HHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000555 933 LWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1427)
Q Consensus 933 l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~ 1012 (1427)
+.+..... ..+..+..+.+.++++.++|.+..++.+ ..||||||||++||+||+++|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1233444556788999999988777765 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1013 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1013 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
++..+.+.|++++.+ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998764 899999999975 46778999999986 677777764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=321.24 Aligned_cols=211 Identities=23% Similarity=0.344 Sum_probs=175.2
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++. + ..|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 578899877631 1 138999999999999999999999999999999865 35799999998754
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 907 QS-TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 907 ~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+...+.++++++.+++.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 224579999999999999999999987532111 11 1233556889999999988888776 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999976 46778999999986 688888874
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=326.11 Aligned_cols=194 Identities=24% Similarity=0.333 Sum_probs=164.7
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHHH
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRE 247 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1427)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5999999999999999999999999999999999999875 8999999987632 3567999999988888899999
Q ss_pred HHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCC
Q 000555 248 TFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV 327 (1427)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 327 (1427)
|+.++.. .. ....++.+++.+||.+..+ +.+..|
T Consensus 101 nl~~~~~--~~---------------------------------------~~~~~~~~l~~~gl~~~~~-----~~~~~L 134 (257)
T PRK11247 101 NVGLGLK--GQ---------------------------------------WRDAALQALAAVGLADRAN-----EWPAAL 134 (257)
T ss_pred HHHhccc--ch---------------------------------------HHHHHHHHHHHcCChhHhc-----CChhhC
Confidence 9987421 00 0012456788899975443 345679
Q ss_pred ChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEE
Q 000555 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLV 407 (1427)
Q Consensus 328 SGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv 407 (1427)
||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++.++.++|+|++.| ...++.++||+|++|++|+++
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsH-d~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTH-DVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987666889988654 455778899999999999999
Q ss_pred EecChH
Q 000555 408 YQGPRA 413 (1427)
Q Consensus 408 ~~G~~~ 413 (1427)
++|+.+
T Consensus 214 ~~~~~~ 219 (257)
T PRK11247 214 LDLTVD 219 (257)
T ss_pred eecccc
Confidence 988754
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=329.22 Aligned_cols=204 Identities=23% Similarity=0.356 Sum_probs=168.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc----cccceEEEEccCCC-CCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF----HVQRTSAYISQTDN-HIP 241 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~~~-~~~ 241 (1427)
.++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 35999999999999999999999999999999999999875 99999999987542 23567999999874 466
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
..||.||+.|+....+.. .. +....++++++.+||++..++
T Consensus 92 ~~tv~enl~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~gl~~~~~~---- 132 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP-----------PI------------------------EIRKRVDRALAEIGLEKYRHR---- 132 (274)
T ss_pred cchHHHHHHhhHHHcCCC-----------HH------------------------HHHHHHHHHHHHCCCHHHhcC----
Confidence 789999999865432210 00 001235678899999765444
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
.++.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.+ .|+|+|++.|++ .++ ..||++++|
T Consensus 133 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~-~~~-~~~d~v~~l 208 (274)
T PRK13644 133 -SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNL-EEL-HDADRIIVM 208 (274)
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHH-hhCCEEEEE
Confidence 4457999999999999999999999999999999999999999999999865 489999976554 455 679999999
Q ss_pred eCCeEEEecChHHHH
Q 000555 402 SEGHLVYQGPRAEVL 416 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~ 416 (1427)
++|++++.|+.+++.
T Consensus 209 ~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 209 DRGKIVLEGEPENVL 223 (274)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998875
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=324.03 Aligned_cols=203 Identities=22% Similarity=0.394 Sum_probs=166.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 36999999999999999999999999999999999999875 899999999875432 34679999999888888
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHh-CCcccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVL-GLDLCSETVVGN 321 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~ 321 (1427)
+||+||+.++...... .+ . ...++.+++.+ ++.+..+
T Consensus 95 ~tv~~~l~~~~~~~~~----~~-------------------~--------------~~~~~~~l~~~~~l~~~~~----- 132 (237)
T PRK11614 95 MTVEENLAMGGFFAER----DQ-------------------F--------------QERIKWVYELFPRLHERRI----- 132 (237)
T ss_pred CcHHHHHHHhhhccCh----hH-------------------H--------------HHHHHHHHHHHHHHHHHHh-----
Confidence 9999999885321100 00 0 01134455555 3543222
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++. |...++.++||++++|
T Consensus 133 ~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l 210 (237)
T PRK11614 133 QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVE-QNANQALKLADRGYVL 210 (237)
T ss_pred CchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CcHHHHHhhCCEEEEE
Confidence 24557999999999999999999999999999999999999999999999865 488998865 4556788999999999
Q ss_pred eCCeEEEecChHHHH
Q 000555 402 SEGHLVYQGPRAEVL 416 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~ 416 (1427)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 211 ENGHVVLEDTGDALL 225 (237)
T ss_pred eCCEEEeeCCHHHHh
Confidence 999999999998874
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=327.27 Aligned_cols=223 Identities=21% Similarity=0.296 Sum_probs=178.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++++..+.. +...+.+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 789999987742110 000112469999999999999999999999999999999999865 35799999998764
Q ss_pred cc---cccceEEEEccCCC--CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCC
Q 000555 907 QS---TFARISGYVEQNDI--HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~~---~~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LS 980 (1427)
.. ..++.++|++|++. +++.+|+.|++.+...... .....+..+.++++++.++|. +..+..+ ..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhcC
Confidence 21 22456999999874 5688899999987654331 123334455688999999994 5555544 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1059 (1427)
||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ ++...+|++++|++ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 56677999999986 6777
Q ss_pred EccCC
Q 000555 1060 YGGKL 1064 (1427)
Q Consensus 1060 ~~g~~ 1064 (1427)
..|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 77764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=340.58 Aligned_cols=200 Identities=27% Similarity=0.429 Sum_probs=169.6
Q ss_pred CeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-------cccceEEEEccCCCCCCCCC
Q 000555 172 DVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-------HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~~~~~~lT 244 (1427)
|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999876 89999999987432 23567999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.|+.+.... . ....+++++++.+||++..+. .+
T Consensus 92 v~enl~~~~~~~~~-------------~------------------------~~~~~~~~~l~~~gL~~~~~~-----~~ 129 (354)
T TIGR02142 92 VRGNLRYGMKRARP-------------S------------------------ERRISFERVIELLGIGHLLGR-----LP 129 (354)
T ss_pred HHHHHHHHhhccCh-------------h------------------------HHHHHHHHHHHHcCChhHhcC-----Ch
Confidence 99999986432100 0 001235678999999764444 45
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.++.++|+|++.| ...++.+++|+|++|++|
T Consensus 130 ~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH-~~~~~~~~~d~i~~l~~G 208 (354)
T TIGR02142 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSH-SLQEVLRLADRVVVLEDG 208 (354)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEec-CHHHHHHhCCEEEEEeCC
Confidence 6799999999999999999999999999999999999999999999997766889988755 456788999999999999
Q ss_pred eEEEecChHHHHH
Q 000555 405 HLVYQGPRAEVLE 417 (1427)
Q Consensus 405 ~iv~~G~~~~~~~ 417 (1427)
+++..|+++++..
T Consensus 209 ~i~~~g~~~~~~~ 221 (354)
T TIGR02142 209 RVAAAGPIAEVWA 221 (354)
T ss_pred EEEEECCHHHHhc
Confidence 9999999988753
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=326.53 Aligned_cols=206 Identities=30% Similarity=0.471 Sum_probs=169.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999999875 89999999887542 2346799999998887889
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||+||+.++....... .. .....++++++.+||++..++ .
T Consensus 92 tv~e~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~~-----~ 131 (258)
T PRK13548 92 TVEEVVAMGRAPHGLS-----------RA------------------------EDDALVAAALAQVDLAHLAGR-----D 131 (258)
T ss_pred CHHHHHHhhhcccCCC-----------cH------------------------HHHHHHHHHHHHcCCHhHhcC-----C
Confidence 9999998853211100 00 001135678889999754444 4
Q ss_pred CCCCChHHhHHHHHHHHHh------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCc
Q 000555 324 IRGVSGGQKKRVTTGEMIV------GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~------~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~ 397 (1427)
+..|||||||||+||++|+ .+|++++|||||+|||+.+...+.+.|+++.++.++|||++.| ...++.++||+
T Consensus 132 ~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH-~~~~~~~~~d~ 210 (258)
T PRK13548 132 YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLH-DLNLAARYADR 210 (258)
T ss_pred cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC-CHHHHHHhcCE
Confidence 5579999999999999999 5999999999999999999999999999987456889988754 45677889999
Q ss_pred EEEEeCCeEEEecChHHHH
Q 000555 398 LLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 398 vilL~~G~iv~~G~~~~~~ 416 (1427)
|++|++|++++.|+.+++.
T Consensus 211 i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 211 IVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEEECCEEEeeCCHHHHh
Confidence 9999999999999988764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=330.27 Aligned_cols=205 Identities=23% Similarity=0.366 Sum_probs=170.4
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCC-CCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDN-HIPEL 243 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~-~~~~l 243 (1427)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4999999999999999999999999999999999999876 99999999987542 23467999999863 34568
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||.||+.++....+.. .. .....++++++.+||.+..++.
T Consensus 95 tv~~~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~----- 134 (277)
T PRK13652 95 TVEQDIAFGPINLGLD-----------EE------------------------TVAHRVSSALHMLGLEELRDRV----- 134 (277)
T ss_pred cHHHHHHhHHHHcCCC-----------HH------------------------HHHHHHHHHHHHCCChhHhcCC-----
Confidence 9999998865432210 00 0012356789999997654444
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
++.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|+ .+++.+.||++++|++
T Consensus 135 ~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~-~~~~~~~~drv~~l~~ 213 (277)
T PRK13652 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ-LDLVPEMADYIYVMDK 213 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999876558899987554 5678899999999999
Q ss_pred CeEEEecChHHHH
Q 000555 404 GHLVYQGPRAEVL 416 (1427)
Q Consensus 404 G~iv~~G~~~~~~ 416 (1427)
|++++.|+++++.
T Consensus 214 G~i~~~g~~~~~~ 226 (277)
T PRK13652 214 GRIVAYGTVEEIF 226 (277)
T ss_pred CeEEEECCHHHHh
Confidence 9999999999875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=327.42 Aligned_cols=208 Identities=23% Similarity=0.338 Sum_probs=170.2
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCC--
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTD-- 237 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~-- 237 (1427)
.+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|+++|+++.... .++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999875 999999999875431 345799999986
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCc-cccc
Q 000555 238 NHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD-LCSE 316 (1427)
Q Consensus 238 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~ 316 (1427)
.+++.+||+||+.+....... ... .....+++++++.+||+ ...
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~----------~~~------------------------~~~~~~~~~~l~~~gl~~~~~- 144 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTS----------LDE------------------------SEQKARIAELLDMVGLRSEDA- 144 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcC----------CCH------------------------HHHHHHHHHHHHHcCCChhhh-
Confidence 466789999999875432100 000 00012356788999995 333
Q ss_pred cccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcC
Q 000555 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 317 t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D 396 (1427)
+..++.|||||||||+|||||+.+|+++||||||+|||+.+...+.+.|+++.++.++|+|++.| ....+.++||
T Consensus 145 ----~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH-~~~~~~~~~d 219 (265)
T TIGR02769 145 ----DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH-DLRLVQSFCQ 219 (265)
T ss_pred ----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC-CHHHHHHHhc
Confidence 34456799999999999999999999999999999999999999999999987655889988754 4567778999
Q ss_pred cEEEEeCCeEEEecChHHHH
Q 000555 397 DLLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 397 ~vilL~~G~iv~~G~~~~~~ 416 (1427)
++++|++|++++.|+.+++.
T Consensus 220 ~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 220 RVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEEeCCEEEEECCHHHHc
Confidence 99999999999999998875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=323.84 Aligned_cols=215 Identities=26% Similarity=0.304 Sum_probs=173.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 902 (1427)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... + ...+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999987663 2458999999999999999999999999999999999632 2 12479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++ .||+||+.+....+. ....+...+.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87532 234567999999988887 899999988653321 1122333456788888888743 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 689999999975 5778899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 677787764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=321.82 Aligned_cols=201 Identities=27% Similarity=0.347 Sum_probs=162.4
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc------cccceEEEEccCC--CC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF------HVQRTSAYISQTD--NH 239 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~~~~~~~yv~Q~~--~~ 239 (1427)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999875 99999999987542 2356799999997 46
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCc-cccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD-LCSETV 318 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 318 (1427)
++.+||+||+.+.....+.. .. .+. .....+++++.++|. ...
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~--~~--------~~~-----------------------~~~~~~~~l~~~~l~~~~~--- 139 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKL--SK--------KEA-----------------------RKEAVLLLLVGVGLPEEVL--- 139 (228)
T ss_pred CCcCCHHHHHHHHHHhccCC--cH--------HHH-----------------------HHHHHHHHHHHCCCChhHh---
Confidence 67899999998865432210 00 000 000124577888884 222
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
+..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++++.++|||++.|+ ..++.++||++
T Consensus 140 --~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~i 216 (228)
T cd03257 140 --NRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD-LGVVAKIADRV 216 (228)
T ss_pred --hCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCeE
Confidence 344567999999999999999999999999999999999999999999999876558899987655 45777899999
Q ss_pred EEEeCCeEEEec
Q 000555 399 LLLSEGHLVYQG 410 (1427)
Q Consensus 399 ilL~~G~iv~~G 410 (1427)
++|++|+++..|
T Consensus 217 ~~l~~G~i~~~g 228 (228)
T cd03257 217 AVMYAGKIVEEG 228 (228)
T ss_pred EEEeCCEEEecC
Confidence 999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=319.14 Aligned_cols=194 Identities=24% Similarity=0.389 Sum_probs=161.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1427)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 36999999999999999999999999999999999999875 999999999875431 346799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+.+||+||+.++....+.. .. ..+..++++++.+||++..++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~~--- 133 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKK-----------ER------------------------EIQRRVGAALRQVGLEHKADA--- 133 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC-----------HH------------------------HHHHHHHHHHHHcCChhhhhC---
Confidence 8999999999875432210 00 001135678889999754333
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++.|+ ..++.++||++++
T Consensus 134 --~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~-~~~~~~~~d~i~~ 209 (214)
T TIGR02673 134 --FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHD-LSLVDRVAHRVII 209 (214)
T ss_pred --ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhcCEEEE
Confidence 3457999999999999999999999999999999999999999999999865 48899887555 5678889999999
Q ss_pred EeCCe
Q 000555 401 LSEGH 405 (1427)
Q Consensus 401 L~~G~ 405 (1427)
|++|+
T Consensus 210 l~~G~ 214 (214)
T TIGR02673 210 LDDGR 214 (214)
T ss_pred ecCCC
Confidence 99985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=324.98 Aligned_cols=215 Identities=22% Similarity=0.316 Sum_probs=174.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--Cc-eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 902 (1427)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 479999987653 2458999999999999999999999999999999999753 11 1479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL----RDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 973 (1427)
.+... ...++.+||++|++.+++. ||+||+.+..... ....+++..+.++++++.+++.+. .+..
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87632 2345679999999888875 9999998764332 111233444567888999888532 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
..+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 358999999999999999999999999999999999999999999999865 799999999976 5677899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 229 ~-G~i~~~g~~ 238 (259)
T PRK14274 229 M-GELVECNDT 238 (259)
T ss_pred C-CEEEEECCH
Confidence 6 688887764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=323.23 Aligned_cols=215 Identities=24% Similarity=0.275 Sum_probs=174.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 902 (1427)
-++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478999987652 245899999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+... ...++.++|++|++.+++ .|++||+.|...... .....+..+.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 133567999999998887 899999988654321 1123344456788999998742 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
...||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 358999999999999999999999999999999999999999999999876 689999999975 5678899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 6 677777764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=370.46 Aligned_cols=205 Identities=26% Similarity=0.368 Sum_probs=167.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|++++|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++.. .++.++||+|++.+|+ .
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-G 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-c
Confidence 46999999999999999999999999999999999999986 999999999987653 5788999999987665 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
|++|||.++.. . . ++++.+..+.+ ..++.++ .+++..||.+|+.+
T Consensus 542 TI~eNi~~~~~---~--~-------------------~e~i~~al~~a---------~l~~~i~--~lp~G~dt~ige~G 586 (686)
T TIGR03797 542 SIFENIAGGAP---L--T-------------------LDEAWEAARMA---------GLAEDIR--AMPMGMHTVISEGG 586 (686)
T ss_pred cHHHHHhcCCC---C--C-------------------HHHHHHHHHHc---------CcHHHHH--hccccccccccCCC
Confidence 99999988521 0 0 01111111110 0111222 34567899999876
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
.+||||||||++||||++++|+|++||||||+||+.++.++.+.|+++ ++|+|++.|++ +..+.||+|++|++
T Consensus 587 -~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~ 659 (686)
T TIGR03797 587 -GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDA 659 (686)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999875 47888876765 66788999999999
Q ss_pred CeEEEecChHHHHH
Q 000555 404 GHLVYQGPRAEVLE 417 (1427)
Q Consensus 404 G~iv~~G~~~~~~~ 417 (1427)
|+++++|+++++.+
T Consensus 660 G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 660 GRVVQQGTYDELMA 673 (686)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=325.28 Aligned_cols=206 Identities=26% Similarity=0.374 Sum_probs=171.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc----------------cccceE
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF----------------HVQRTS 230 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------------~~~~~~ 230 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 36999999999999999999999999999999999999875 99999999887431 235679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHh-cCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHh
Q 000555 231 AYISQTDNHIPELTVRETFDFAARW-QGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVL 309 (1427)
Q Consensus 231 ~yv~Q~~~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l 309 (1427)
+|++|++.+++..||+||+.++... .+.. .. + ....++++++.+
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~ 134 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA-----------RA----------E--------------AEKRAMELLDMV 134 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC-----------HH----------H--------------HHHHHHHHHHHc
Confidence 9999999888899999999885321 1100 00 0 011356788899
Q ss_pred CCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCch
Q 000555 310 GLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPP 389 (1427)
Q Consensus 310 gL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~ 389 (1427)
|+++..+ +.+..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++.++|+|++.|+ .+
T Consensus 135 gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~-~~ 208 (252)
T TIGR03005 135 GLADKAD-----HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE-MG 208 (252)
T ss_pred CChhHhh-----cChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-HH
Confidence 9975443 34567999999999999999999999999999999999999999999999876568899987554 56
Q ss_pred hHHhhcCcEEEEeCCeEEEecChHHHH
Q 000555 390 ETFDLFDDLLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 390 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 416 (1427)
++.+++|++++|++|++++.|+.+++.
T Consensus 209 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 209 FAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 778899999999999999999988774
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=322.04 Aligned_cols=202 Identities=26% Similarity=0.327 Sum_probs=164.9
Q ss_pred eeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHHHHH
Q 000555 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETF 249 (1427)
Q Consensus 170 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l 249 (1427)
|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999875 9999999998754322 248999999889999999999
Q ss_pred HHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCCh
Q 000555 250 DFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSG 329 (1427)
Q Consensus 250 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG 329 (1427)
.++...... + .... .....++++++.+||++..++ .+..|||
T Consensus 76 ~~~~~~~~~--~-------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~~LSg 117 (230)
T TIGR01184 76 ALAVDRVLP--D-------LSKS------------------------ERRAIVEEHIALVGLTEAADK-----RPGQLSG 117 (230)
T ss_pred HHHHHhccc--C-------CCHH------------------------HHHHHHHHHHHHcCCHHHHcC-----ChhhCCH
Confidence 886321000 0 0000 001135678889999754444 3456999
Q ss_pred HHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEe
Q 000555 330 GQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQ 409 (1427)
Q Consensus 330 GqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~ 409 (1427)
||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ ..++.++||++++|++|+++..
T Consensus 118 G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~v~~l~~G~i~~~ 196 (230)
T TIGR01184 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD-VDEALLLSDRVVMLTNGPAANI 196 (230)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcCEEEEEeCCcEecc
Confidence 999999999999999999999999999999999999999999877668899987554 5678899999999999999998
Q ss_pred cChHHH
Q 000555 410 GPRAEV 415 (1427)
Q Consensus 410 G~~~~~ 415 (1427)
|+..++
T Consensus 197 ~~~~~~ 202 (230)
T TIGR01184 197 GQILEV 202 (230)
T ss_pred cCceec
Confidence 865543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=333.92 Aligned_cols=223 Identities=16% Similarity=0.220 Sum_probs=177.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--ceeEEEEEECCc
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--GYIEGDIKISGY 903 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~ 903 (1427)
.++++|++..+... .+...+|+|||++|++||++||+|+||||||||+++|+|.... ....|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37889998776421 1235699999999999999999999999999999999997542 235799999998
Q ss_pred cCCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHhccCCcC---CCHHHHHHHHHHHHHHcCCccc---cc
Q 000555 904 PKEQS---T----FARISGYVEQNDI--HSPQVTVEESLWFSANLRLSKE---VSKNQRHEFVEEVMRLVELDSL---RD 968 (1427)
Q Consensus 904 ~~~~~---~----~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l~~~~~---~~~~~~~~~v~~~l~~l~L~~~---~~ 968 (1427)
++... . .++.++||+|++. +.|.+||.+++........... ....+..+.+.++++.++|.+. .+
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 76421 1 1346999999975 6789999999976422110000 1113345678899999999753 23
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhc
Q 000555 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFD 1047 (1427)
Q Consensus 969 ~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D 1047 (1427)
... ..||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|||+|||+++ .+.+.+|
T Consensus 154 ~~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SFP-----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CCc-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 333 589999999999999999999999999999999999999999999999874 899999999975 4667899
Q ss_pred eEEEEecCcEEEEccCC
Q 000555 1048 ELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1048 ~v~~l~~gg~~~~~g~~ 1064 (1427)
++++|.+ |++++.|+.
T Consensus 228 ri~vm~~-G~ive~g~~ 243 (330)
T PRK15093 228 KINVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEEC-CEEEEECCH
Confidence 9999986 688888875
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=322.57 Aligned_cols=215 Identities=23% Similarity=0.323 Sum_probs=173.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 902 (1427)
.++++|+++.++ ++++|+|+|++|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478899987653 23589999999999999999999999999999999996431 12479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+... ...++.++|++|++.+++ .|++||+.+....+. ..+.++..+.++++++.+++.+ ..+..+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 144 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA-- 144 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC--
Confidence 87642 234567999999988887 899999998654321 1123344566788888888742 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. .+.+.+|++++|+
T Consensus 145 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 145 ---LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred ---CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 5799999999999999999999999999999999999999999999985 4799999999975 4777899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 577777753
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=316.68 Aligned_cols=209 Identities=26% Similarity=0.421 Sum_probs=175.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.+... .+.+.+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5788888765310 112569999999999999999999999999999999999765 35799999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 907 QS------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
.. .+++.++|++|++.+++..|+.||+.+...... ....++..+.++++++.++|.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 245679999999999999999999998754321 1234445567899999999987777765 5899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ..+.+|++++|++|
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g 217 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999876 5899999999974 46789999999864
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=338.52 Aligned_cols=194 Identities=25% Similarity=0.400 Sum_probs=168.1
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc-------ccccceEEEEccCCCCCCCCCH
Q 000555 857 NVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-------STFARISGYVEQNDIHSPQVTV 929 (1427)
Q Consensus 857 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 929 (1427)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999865 357999999987532 1245679999999999999999
Q ss_pred HHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000555 930 EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1427)
Q Consensus 930 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgL 1009 (1427)
+||+.|+.... ...+..+.++++++.++|.+..+..+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 12334556889999999998888765 489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1010 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|+.++..+.+.|+++.++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999998765 899999999986 57778999999986 678888764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=321.74 Aligned_cols=201 Identities=24% Similarity=0.335 Sum_probs=166.0
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--cccceEEEEc-cCCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYIS-QTDNHIPE 242 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~~~~~~~ 242 (1427)
.+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|++.... ..++.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 457999999999999999999999999999999999999875 99999999875332 2356799998 55667788
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.+.....+... .+ ....++.+++.+||++..++.+
T Consensus 110 ~tv~e~l~~~~~~~~~~~-----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~--- 151 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPP-----------AR------------------------FKKRLDELSELLDLEELLDTPV--- 151 (236)
T ss_pred CcHHHHHHHHHHHcCCCH-----------HH------------------------HHHHHHHHHHHcCChhHhcCCh---
Confidence 999999988654332100 00 0112566888899987666654
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ ..++.++||++++|+
T Consensus 152 --~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~-~~~~~~~~d~i~~l~ 228 (236)
T cd03267 152 --RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY-MKDIEALARRVLVID 228 (236)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC-HHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999999877668899987555 457788999999999
Q ss_pred CCeEEEec
Q 000555 403 EGHLVYQG 410 (1427)
Q Consensus 403 ~G~iv~~G 410 (1427)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=324.05 Aligned_cols=216 Identities=23% Similarity=0.306 Sum_probs=176.2
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc-e--eEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-Y--IEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~--~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+.. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478999987663 235899999999999999999999999999999999975421 2 479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++ .||+||+.+....+. ..++.+..+.++++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234567999999998887 899999987654321 1223334456788889888842 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
+..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 358999999999999999999999999999999999999999999999865 699999999986 5778899999997
Q ss_pred c----CcEEEEccCC
Q 000555 1054 R----GGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~----gg~~~~~g~~ 1064 (1427)
+ .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4788888875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=323.11 Aligned_cols=219 Identities=21% Similarity=0.316 Sum_probs=173.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--Cc-eeEEEEEECCc
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GG-YIEGDIKISGY 903 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~ 903 (1427)
-+++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 46788877652 2468999999999999999999999999999999999753 11 25799999998
Q ss_pred cCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000555 904 PKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSG 978 (1427)
Q Consensus 904 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 978 (1427)
+... ..+++.++|++|++.+++. |++||+.+....+. ......+.++.++++++.+++.+....... ..+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhh
Confidence 7532 1346679999999888885 99999988643321 111223344567889999998652211111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEE
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058 (1427)
Q Consensus 979 LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1058 (1427)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999976 56778999999986 678
Q ss_pred EEccCC
Q 000555 1059 IYGGKL 1064 (1427)
Q Consensus 1059 ~~~g~~ 1064 (1427)
++.|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 777764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=337.70 Aligned_cols=190 Identities=24% Similarity=0.380 Sum_probs=166.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc-------ccccceEEEEccCCCCCCCCCH
Q 000555 857 NVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-------STFARISGYVEQNDIHSPQVTV 929 (1427)
Q Consensus 857 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 929 (1427)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.+||++|+..++|++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999865 357999999987532 1245679999999999999999
Q ss_pred HHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000555 930 EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1427)
Q Consensus 930 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgL 1009 (1427)
+||+.|... ....+.++++++.++|.+..+..+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112345789999999988877765 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1010 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999998765 899999999985 57888999999986 678888875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=327.36 Aligned_cols=205 Identities=21% Similarity=0.281 Sum_probs=169.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCC-CCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDN-HIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~-~~~~ 242 (1427)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. +++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 35899999999999999999999999999999999999875 99999999987542 24567999999974 6788
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
.|+++|+.|.....+.. .. + ....++.+++.+||.+..+ .
T Consensus 99 ~~v~~~~~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~~l~~~~~-----~ 138 (269)
T PRK13648 99 SIVKYDVAFGLENHAVP-----------YD----------E--------------MHRRVSEALKQVDMLERAD-----Y 138 (269)
T ss_pred ccHHHHHHhhHHhcCCC-----------HH----------H--------------HHHHHHHHHHHcCCchhhh-----C
Confidence 89999998865432110 00 0 0113567889999975444 3
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.++.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|++ .++. .+|+|++|+
T Consensus 139 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~-~~d~i~~l~ 216 (269)
T PRK13648 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAM-EADHVIVMN 216 (269)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHh-cCCEEEEEE
Confidence 45679999999999999999999999999999999999999999999998765588999976665 4555 499999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|++++.|+++++.
T Consensus 217 ~G~i~~~g~~~~~~ 230 (269)
T PRK13648 217 KGTVYKEGTPTEIF 230 (269)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998874
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=323.92 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=168.1
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCcc-----cccceEEEEccCCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNHI 240 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1427)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ .+.+|+|+++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5999999999999999999999999999999999999753 12389999999987531 2356799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+ .||+||+.++.+..+... ..+ ....++.+++.+||...... .-
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~-~~ 138 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKD----------KKE------------------------LDEIVEESLKKAALWDEVKD-RL 138 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCC----------HHH------------------------HHHHHHHHHHHcCCCcchhh-Hh
Confidence 8 999999998754322100 000 01135678888998621100 11
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
+..+..|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|++.| ...++.+++|++++
T Consensus 139 ~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH-~~~~~~~~~d~i~~ 215 (247)
T TIGR00972 139 HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTH-NMQQAARISDRTAF 215 (247)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEec-CHHHHHHhCCEEEE
Confidence 344567999999999999999999999999999999999999999999999865 478888655 45678889999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|+++++|+++++.
T Consensus 216 l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 216 FYDGELVEYGPTEQIF 231 (247)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=315.56 Aligned_cols=191 Identities=27% Similarity=0.390 Sum_probs=162.1
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc-------ccccceEEEEccCCCCCCCCCH
Q 000555 857 NVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-------STFARISGYVEQNDIHSPQVTV 929 (1427)
Q Consensus 857 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 929 (1427)
|+|+++++ |+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999865 357999999987531 1235679999999999999999
Q ss_pred HHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000555 930 EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1427)
Q Consensus 930 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgL 1009 (1427)
+||+.+..... ......+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 22334456888999999987666654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 1010 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|+.+...+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999975 46678999999986 5666544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=320.10 Aligned_cols=288 Identities=23% Similarity=0.350 Sum_probs=229.6
Q ss_pred CCCcceeeecccccch-hhhHHHHHHhhhcCccCHHHHHHH-----HHHHHh--hcCCCCC-----ccEEEEeeeEEEEE
Q 000555 65 GGEAKTETIDVRKLNR-SRRELVVSKALATNDQDNYKLLSA-----IKERLD--RVGIEVP-----KVEVRFQNLKVVAD 131 (1427)
Q Consensus 65 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~p-----~~~v~~~~l~~~~~ 131 (1427)
|..+..++||..=.-. +||+.+|.+|..+-.++.+++|.. -+..++ --|-+.| .+-+.-+|++|.-.
T Consensus 208 gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~ 287 (534)
T COG4172 208 GMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFP 287 (534)
T ss_pred CcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEe
Confidence 3444557788776665 999999999999999999988832 122333 2333333 23455677776654
Q ss_pred EecCCCcCCchhHHhHHHHHHHhhhccccCCccccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCce
Q 000555 132 VQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKS 211 (1427)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~ 211 (1427)
...| +.++......++++||+++++||.++|+|.||||||||=.+|.+++++ +
T Consensus 288 i~~g-----------------------~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~ 340 (534)
T COG4172 288 IKGG-----------------------FLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----Q 340 (534)
T ss_pred cCCc-----------------------cccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----C
Confidence 4321 122233457899999999999999999999999999999999999876 6
Q ss_pred eEEEECCeecCccc------ccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChh
Q 000555 212 GNITYNGYKLDEFH------VQRTSAYISQTD--NHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283 (1427)
Q Consensus 212 G~V~~~G~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (1427)
|+|.++|++++... .++.+-.|+|+| .+-|.+||.+-|.-+.+...+. +++.|
T Consensus 341 G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~---------ls~~e---------- 401 (534)
T COG4172 341 GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPK---------LSAAE---------- 401 (534)
T ss_pred ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCC---------CCHHH----------
Confidence 99999999987542 467889999997 4789999999998887665431 11111
Q ss_pred HHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHH
Q 000555 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 363 (1427)
Q Consensus 284 ~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~ 363 (1427)
...++.++|+..||+. ...++++.+.|||||||++||||++.+|++++||||||+||-+...
T Consensus 402 --------------R~~rv~~aL~EVGLDp----~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQa 463 (534)
T COG4172 402 --------------RDQRVIEALEEVGLDP----ATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQA 463 (534)
T ss_pred --------------HHHHHHHHHHHcCCCh----hHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHH
Confidence 1235778899999975 3457888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEecChHHHHH
Q 000555 364 QIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 364 ~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 417 (1427)
+|+++|+++-++++.+-++ |.|+..-+-.+||+|+||.+|+||++|+.+++.+
T Consensus 464 Qvv~LLr~LQ~k~~LsYLF-ISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 464 QVLDLLRDLQQKHGLSYLF-ISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHHHhCCeEEE-EeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 9999999999999999988 5788888889999999999999999999999864
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=333.35 Aligned_cols=218 Identities=17% Similarity=0.206 Sum_probs=172.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-CCceeEEEECCeecCcccc-------cceEEEEccCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS-LKKSGNITYNGYKLDEFHV-------QRTSAYISQTDN 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~ 238 (1427)
..+|+|||++|++||+++|+|+||||||||+++|+|++++. ...+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 56999999999999999999999999999999999998642 1348999999998754321 247999999875
Q ss_pred --CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccc
Q 000555 239 --HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316 (1427)
Q Consensus 239 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 316 (1427)
+.+.+||.+++.+........ +. .. .+. . +...++.++|+.+||++..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~-~~--~~---~~~---------~--------------~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYK-GR--WW---QRF---------G--------------WRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcc-cc--cc---ccH---------H--------------HHHHHHHHHHHHCCCCChHH
Confidence 578899999997643211000 00 00 000 0 00123677899999974211
Q ss_pred cccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcC
Q 000555 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 317 t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D 396 (1427)
..++.+..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.++.|.|+|++ +|....+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~i-tHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI-SHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhCC
Confidence 23456678999999999999999999999999999999999999999999999977668999986 566778889999
Q ss_pred cEEEEeCCeEEEecChHHHH
Q 000555 397 DLLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 397 ~vilL~~G~iv~~G~~~~~~ 416 (1427)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998875
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=370.45 Aligned_cols=207 Identities=25% Similarity=0.394 Sum_probs=165.0
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEEEccCCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~ 242 (1427)
++++|+|+|++++|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++.. .++.++||+|++.+|.
T Consensus 493 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~- 568 (711)
T TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS- 568 (711)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-
Confidence 457999999999999999999999999999999999999986 999999999987643 5688999999987665
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
.|+||||.++... . . +.++.+..+.+. .++.++ .+++..||.+|+.
T Consensus 569 gTIreNI~~g~~~--~---~------------------~e~i~~al~~a~---------l~~~i~--~lp~GldT~ige~ 614 (711)
T TIGR00958 569 GSVRENIAYGLTD--T---P------------------DEEIMAAAKAAN---------AHDFIM--EFPNGYDTEVGEK 614 (711)
T ss_pred cCHHHHHhcCCCC--C---C------------------HHHHHHHHHHcC---------CHHHHH--hCCCccCCcccCC
Confidence 6999999885210 0 0 001111111100 111222 2456688999987
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
+. .||||||||++||||++++|+|++||||||+||+.++..+.+ .. ...++|+|++.|++ ++.+.+|+|++|+
T Consensus 615 G~-~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl--~~i~~aD~IivL~ 687 (711)
T TIGR00958 615 GS-QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRL--STVERADQILVLK 687 (711)
T ss_pred CC-cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccH--HHHHhCCEEEEEE
Confidence 54 699999999999999999999999999999999999998888 22 22478998876665 5678899999999
Q ss_pred CCeEEEecChHHHHH
Q 000555 403 EGHLVYQGPRAEVLE 417 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~ 417 (1427)
+|+++++|+++++.+
T Consensus 688 ~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 688 KGSVVEMGTHKQLME 702 (711)
T ss_pred CCEEEEeeCHHHHHh
Confidence 999999999999875
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=329.01 Aligned_cols=209 Identities=26% Similarity=0.340 Sum_probs=170.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCC-CCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDN-HIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~-~~~~ 242 (1427)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+...+|+|+++|.++... ..++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 3599999999999999999999999999999999999987511239999999988542 23467999999974 6778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
.||+||+.|..+..+.. ..+ ...+++.+++.+||++.. +.
T Consensus 100 ~tv~enl~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~L~~~~-----~~ 139 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP-----------RPE------------------------MIKIVRDVLADVGMLDYI-----DS 139 (282)
T ss_pred CCHHHHHHhhHHhCCCC-----------HHH------------------------HHHHHHHHHHHCCChhHh-----cC
Confidence 99999998864332210 000 012356788999997544 34
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++.|++ .++ ..||++++|+
T Consensus 140 ~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~ 217 (282)
T PRK13640 140 EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLD 217 (282)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEE
Confidence 45679999999999999999999999999999999999999999999998765688999986665 445 5899999999
Q ss_pred CCeEEEecChHHHHH
Q 000555 403 EGHLVYQGPRAEVLE 417 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~ 417 (1427)
+|++++.|+++++..
T Consensus 218 ~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 218 DGKLLAQGSPVEIFS 232 (282)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999988753
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=361.82 Aligned_cols=209 Identities=26% Similarity=0.422 Sum_probs=170.1
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~ 242 (1427)
++++|+|+|++++|||.+||+||||||||||++.|.|.++|. +|+|.+||+++++. .+++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 357999999999999999999999999999999999999985 99999999998765 46789999999987776
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
.||+|||.++..- . .++++.+..+.+ ..++.+.. |+++.||.+|++
T Consensus 417 ~TI~~NI~~g~~~-----a------------------t~eei~~a~k~a---------~~~d~I~~--lp~g~dt~vge~ 462 (567)
T COG1132 417 GTIRENIALGRPD-----A------------------TDEEIEEALKLA---------NAHEFIAN--LPDGYDTIVGER 462 (567)
T ss_pred ccHHHHHhcCCCC-----C------------------CHHHHHHHHHHh---------ChHHHHHh--CcccccceecCC
Confidence 7999999996310 0 001111111111 12222333 466789999976
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
+. .||||||||++||||++.+|+||+||||||+||+.+...|.+.++++.+ ++|+++..|++ .+...+|+|++|+
T Consensus 463 G~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl--sti~~aD~IiVl~ 537 (567)
T COG1132 463 GV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL--STIKNADRIIVLD 537 (567)
T ss_pred Cc-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH--hHHHhCCEEEEEE
Confidence 65 5999999999999999999999999999999999999999999998763 57877755554 4555699999999
Q ss_pred CCeEEEecChHHHHH
Q 000555 403 EGHLVYQGPRAEVLE 417 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~ 417 (1427)
+|++++.|+++++..
T Consensus 538 ~G~i~e~G~h~eLl~ 552 (567)
T COG1132 538 NGRIVERGTHEELLA 552 (567)
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999999975
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=319.43 Aligned_cols=198 Identities=29% Similarity=0.385 Sum_probs=163.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccc-------cceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-------QRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~ 239 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35999999999999999999999999999999999999876 9999999998754321 2579999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++.+||.||+.+.....+.. . + ....+++++++.+||.+..+.
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~-----------~----------~--------------~~~~~~~~~l~~~~l~~~~~~-- 142 (228)
T PRK10584 100 IPTLNALENVELPALLRGES-----------S----------R--------------QSRNGAKALLEQLGLGKRLDH-- 142 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCC-----------H----------H--------------HHHHHHHHHHHHcCCHhHhhC--
Confidence 89999999998864332110 0 0 001235678899999754443
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
.+..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++++++.++|||++.|++ .++ +.+|+++
T Consensus 143 ---~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~ 217 (228)
T PRK10584 143 ---LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRL 217 (228)
T ss_pred ---ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEE
Confidence 34579999999999999999999999999999999999999999999998766688999876665 455 5699999
Q ss_pred EEeCCeEEEe
Q 000555 400 LLSEGHLVYQ 409 (1427)
Q Consensus 400 lL~~G~iv~~ 409 (1427)
+|++|+++++
T Consensus 218 ~l~~g~i~~~ 227 (228)
T PRK10584 218 RLVNGQLQEE 227 (228)
T ss_pred EEECCEEEec
Confidence 9999999753
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=325.00 Aligned_cols=221 Identities=20% Similarity=0.276 Sum_probs=171.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .+..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999875 999999999875432 13458999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.++....... +........ ....+. ..+....++..++.+||+... ++
T Consensus 95 ~tv~enl~~~~~~~~~~----~~~~~~~~~---~~~~~~-------------~~~~~~~~~~~l~~~gl~~~~-----~~ 149 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT----GLFSGLLKT---PAFRRA-------------ESEALDRAATWLERVGLLEHA-----NR 149 (255)
T ss_pred CcHHHHHHHhhhccccc----hhhhhhccc---cccccc-------------hhHHHHHHHHHHHhCChhhhh-----hC
Confidence 99999999864311000 000000000 000000 000112356778889987533 34
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.++.++|||++.| ...++.++||++++|+
T Consensus 150 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH-~~~~~~~~~d~i~~l~ 228 (255)
T PRK11300 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH-DMKLVMGISDRIYVVN 228 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC-CHHHHHHhCCEEEEEE
Confidence 456799999999999999999999999999999999999999999999987655889998755 4567889999999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|++++.|+.+++.
T Consensus 229 ~g~i~~~~~~~~~~ 242 (255)
T PRK11300 229 QGTPLANGTPEEIR 242 (255)
T ss_pred CCeEEecCCHHHHh
Confidence 99999999988764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=324.69 Aligned_cols=206 Identities=20% Similarity=0.256 Sum_probs=169.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCc----------------ccccceE
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE----------------FHVQRTS 230 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------------~~~~~~~ 230 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. ...++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 46999999999999999999999999999999999999875 8999999987742 1234679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHH-hcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHh
Q 000555 231 AYISQTDNHIPELTVRETFDFAAR-WQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVL 309 (1427)
Q Consensus 231 ~yv~Q~~~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l 309 (1427)
+|++|++.+++.+||+||+.++.. ..... . + ....++.++++.+
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~-----------~----------~--------------~~~~~~~~~l~~~ 139 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS-----------K----------Q--------------EARERAVKYLAKV 139 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC-----------H----------H--------------HHHHHHHHHHHHc
Confidence 999999988888999999987532 11110 0 0 0012356788999
Q ss_pred CCccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCch
Q 000555 310 GLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPP 389 (1427)
Q Consensus 310 gL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~ 389 (1427)
||.+.. .++.++.|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+ .|+|+|++.| ...
T Consensus 140 gl~~~~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH-~~~ 213 (257)
T PRK10619 140 GIDERA----QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTH-EMG 213 (257)
T ss_pred CCChhh----hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeC-CHH
Confidence 996432 2345668999999999999999999999999999999999999999999999865 4899988755 456
Q ss_pred hHHhhcCcEEEEeCCeEEEecChHHHH
Q 000555 390 ETFDLFDDLLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 390 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 416 (1427)
++.++||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 777899999999999999999988764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=326.45 Aligned_cols=216 Identities=25% Similarity=0.345 Sum_probs=179.2
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++. .....+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 4789999887631 012358999999999999999999999999999999999865 3579999999876
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDI-HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234667999999974 577889999998764321 2234444567889999999988777765 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|+++. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 9999999999763 4 46999999986 57777
Q ss_pred ccCC
Q 000555 1061 GGKL 1064 (1427)
Q Consensus 1061 ~g~~ 1064 (1427)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 7764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=321.49 Aligned_cols=215 Identities=26% Similarity=0.356 Sum_probs=174.2
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 378999987652 246899999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL----RDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 973 (1427)
.+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.+++.++.+++.+. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 143 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKP--- 143 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87542 134567999999998887 899999988653321 11233344567888898888542 3333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
..+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 144 --~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~ 219 (250)
T PRK14262 144 --GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMY 219 (250)
T ss_pred --hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 358999999999999999999999999999999999999999999999865 799999999975 4778899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 220 ~-G~i~~~g~~ 229 (250)
T PRK14262 220 R-GELIEYGPT 229 (250)
T ss_pred C-CEEEEecCH
Confidence 6 577777764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=328.36 Aligned_cols=206 Identities=21% Similarity=0.305 Sum_probs=167.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-------cccceEEEEccCCC-
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-------HVQRTSAYISQTDN- 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~~- 238 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999875 99999999987532 23467999999862
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
.+...||+||+.|.....+.. .. + ....++++++.+||...
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~~l~~~---- 137 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS-----------QE----------E--------------AEALAREKLALVGISES---- 137 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC-----------HH----------H--------------HHHHHHHHHHHcCCChh----
Confidence 333479999999865432110 00 0 01125667888898631
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
..+..++.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.+ .++|||++.|+ ..++.++||++
T Consensus 138 ~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~-~~~~~~~~d~i 215 (280)
T PRK13649 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHL-MDDVANYADFV 215 (280)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecc-HHHHHHhCCEE
Confidence 12344567999999999999999999999999999999999999999999999865 48899987655 45778899999
Q ss_pred EEEeCCeEEEecChHHHH
Q 000555 399 LLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~ 416 (1427)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999998874
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=326.58 Aligned_cols=204 Identities=27% Similarity=0.384 Sum_probs=168.1
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-----cccceEEEEccCCC-CCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDN-HIP 241 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~-~~~ 241 (1427)
++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|+++... ..++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5999999999999999999999999999999999999875 89999999987421 23567999999863 344
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
..||+||+.++....+. .+.+ ...++.++++.+||.+..++
T Consensus 93 ~~tv~e~i~~~~~~~~~-----------~~~~------------------------~~~~~~~~l~~~~L~~~~~~---- 133 (275)
T PRK13639 93 APTVEEDVAFGPLNLGL-----------SKEE------------------------VEKRVKEALKAVGMEGFENK---- 133 (275)
T ss_pred cccHHHHHHHHHHHcCC-----------CHHH------------------------HHHHHHHHHHHCCCchhhcC----
Confidence 57999999886422111 0000 01135678899999755444
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
.++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++ ++|||++.| ...++.++||++++|
T Consensus 134 -~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH-~~~~~~~~~d~i~~l 210 (275)
T PRK13639 134 -PPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTH-DVDLVPVYADKVYVM 210 (275)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEec-CHHHHHHhCCEEEEE
Confidence 45579999999999999999999999999999999999999999999998754 889998754 456778899999999
Q ss_pred eCCeEEEecChHHHH
Q 000555 402 SEGHLVYQGPRAEVL 416 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~ 416 (1427)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 211 SDGKIIKEGTPKEVF 225 (275)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999875
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=363.71 Aligned_cols=209 Identities=23% Similarity=0.360 Sum_probs=169.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|++++|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 46999999999999999999999999999999999999986 899999999987643 5678999999987765 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
|++|||.++..- .. . +.++.+..+.+ ..++.++ .|++..||.+|+.+
T Consensus 432 Ti~~Ni~~~~~~-~~---~------------------~~~i~~al~~~---------~l~~~i~--~lp~Gldt~ig~~g 478 (582)
T PRK11176 432 TIANNIAYARTE-QY---S------------------REQIEEAARMA---------YAMDFIN--KMDNGLDTVIGENG 478 (582)
T ss_pred hHHHHHhcCCCC-CC---C------------------HHHHHHHHHHh---------CcHHHHH--hcccccCceeCCCC
Confidence 999999875210 00 0 00111111100 0111222 25667899999876
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
..||||||||++|||||+++|+|++||||||+||+.++..+.+.|+++.+ ++|+|++.|++ +..+.||+|++|++
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~ 553 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVED 553 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998743 68988876665 67889999999999
Q ss_pred CeEEEecChHHHHH
Q 000555 404 GHLVYQGPRAEVLE 417 (1427)
Q Consensus 404 G~iv~~G~~~~~~~ 417 (1427)
|+++++|+++++.+
T Consensus 554 g~i~e~g~~~~l~~ 567 (582)
T PRK11176 554 GEIVERGTHAELLA 567 (582)
T ss_pred CEEEEeCCHHHHHh
Confidence 99999999999864
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=316.62 Aligned_cols=198 Identities=27% Similarity=0.360 Sum_probs=167.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCCHH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVR 246 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999875 999999998875322 35799999998888889999
Q ss_pred HHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCC
Q 000555 247 ETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG 326 (1427)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 326 (1427)
||+.+.....+. ....++.+++.+||++..+. .+..
T Consensus 89 ~~~~~~~~~~~~---------------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~ 124 (223)
T TIGR03740 89 ENLKVHTTLLGL---------------------------------------PDSRIDEVLNIVDLTNTGKK-----KAKQ 124 (223)
T ss_pred HHHHHHHHHcCC---------------------------------------CHHHHHHHHHHcCCcHHHhh-----hHhh
Confidence 999876433211 00124567888999754443 4456
Q ss_pred CChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeE
Q 000555 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHL 406 (1427)
Q Consensus 327 LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~i 406 (1427)
||||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++.|+ ..++.+.||++++|++|++
T Consensus 125 LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~-~~~~~~~~d~i~~l~~g~i 202 (223)
T TIGR03740 125 FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHI-LSEVQQLADHIGIISEGVL 202 (223)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC-HHHHHHhcCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999865 48899887655 4567889999999999999
Q ss_pred EEecChHH
Q 000555 407 VYQGPRAE 414 (1427)
Q Consensus 407 v~~G~~~~ 414 (1427)
++.|++.+
T Consensus 203 ~~~~~~~~ 210 (223)
T TIGR03740 203 GYQGKINK 210 (223)
T ss_pred EEecChhh
Confidence 99998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=354.80 Aligned_cols=218 Identities=25% Similarity=0.364 Sum_probs=182.3
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|++++++ ++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 78999987663 24689999999999999999999999999999999998653 5799999998753
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhccCC-cCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 907 QS----TFARISGYVEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 907 ~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..++.+||++|++.+++.+||+|++.+....... ...+..+.++.++++++.++|.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1245699999999999999999999886432210 11223344556889999999998877766 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
|||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|.|||+++|++. ++...+|++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999985 57778999999986 678888
Q ss_pred cCCCC
Q 000555 1062 GKLGV 1066 (1427)
Q Consensus 1062 g~~~~ 1066 (1427)
|+...
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 77653
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=318.36 Aligned_cols=196 Identities=26% Similarity=0.332 Sum_probs=162.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 36999999999999999999999999999999999999875 999999999875421 356799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+.+||+||+.+.....+.. . . + ....++..++.+||.+..+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~--~---------~----------~--------------~~~~~~~~l~~~~l~~~~~---- 132 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGAS--G---------D----------D--------------IRRRVSAALDKVGLLDKAK---- 132 (222)
T ss_pred ccccHHHHHHhHHHhcCCC--H---------H----------H--------------HHHHHHHHHHHcCChhhhh----
Confidence 8999999999865432210 0 0 0 0112456788888875433
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
+.+..|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.++ +.|+|++. |...++.+.||+|++
T Consensus 133 -~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~s-H~~~~~~~~~d~i~~ 209 (222)
T PRK10908 133 -NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMAT-HDIGLISRRSYRMLT 209 (222)
T ss_pred -CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEe-CCHHHHHHhCCEEEE
Confidence 345679999999999999999999999999999999999999999999998654 78888865 455677889999999
Q ss_pred EeCCeEE
Q 000555 401 LSEGHLV 407 (1427)
Q Consensus 401 L~~G~iv 407 (1427)
|++|+++
T Consensus 210 l~~G~i~ 216 (222)
T PRK10908 210 LSDGHLH 216 (222)
T ss_pred EECCEEc
Confidence 9999985
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=326.56 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=167.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCc--c---cccceEEEEccCCC-CC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE--F---HVQRTSAYISQTDN-HI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~~~-~~ 240 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35999999999999999999999999999999999999876 9999999998742 1 23467999999864 34
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
...|+.||+.+.....+.. .. + ....++.+++.+||++..++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~--- 132 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP-----------EA----------E--------------ITRRVDEALTLVDAQHFRHQ--- 132 (271)
T ss_pred ccccHHHHHHHHHHHcCCC-----------HH----------H--------------HHHHHHHHHHHcCCHhHhcC---
Confidence 5568999998864432210 00 0 01125668888898754444
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
.+..||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++.+ .++|+|++. |...++.++||++++
T Consensus 133 --~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vt-H~~~~~~~~~d~i~~ 208 (271)
T PRK13638 133 --PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISS-HDIDLIYEISDAVYV 208 (271)
T ss_pred --CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEE
Confidence 4557999999999999999999999999999999999999999999999865 488988865 555677889999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|++++.|+++++.
T Consensus 209 l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 209 LRQGQILTHGAPGEVF 224 (271)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998874
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=327.61 Aligned_cols=205 Identities=22% Similarity=0.310 Sum_probs=169.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCC-CCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDN-HIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~-~~~~ 242 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 45999999999999999999999999999999999999875 99999999987542 23567999999974 6778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
.||.||+.++....+.. +.+ ...+++++++.+||....+ .
T Consensus 97 ~tv~eni~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~l~~~~~-----~ 136 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP-----------REE------------------------MIKRVDEALLAVNMLDFKT-----R 136 (277)
T ss_pred CCHHHHHHhhHHHcCCC-----------HHH------------------------HHHHHHHHHHHCCCHhHhh-----C
Confidence 89999998864322110 000 0113567888899975443 3
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.++.|+|+|++.|+. .++. .+|+|++|+
T Consensus 137 ~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~-~~~~-~~d~i~~l~ 214 (277)
T PRK13642 137 EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL-DEAA-SSDRILVMK 214 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH-hCCEEEEEE
Confidence 45679999999999999999999999999999999999999999999998765689999876554 4554 699999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|+++..|+++++.
T Consensus 215 ~G~i~~~g~~~~~~ 228 (277)
T PRK13642 215 AGEIIKEAAPSELF 228 (277)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998875
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=353.58 Aligned_cols=211 Identities=27% Similarity=0.403 Sum_probs=173.0
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+||+|+++.. +++++|+|+|++|+|||++||+||||||||||+++|+|..++ .+|+|.+||.|
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 368999999987521 235699999999999999999999999999999999998763 57999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 974 (1427)
.++ ..+++.++||+|++.+++ .|++||+.++. .+.++ +.+.++++..++.+ -.|+.+|..
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 654 456788999999998875 69999998752 12222 33566677766543 356777754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||++|||||+++|+||+||||||+||+++++.+++ .. ..+++|+|+++|+++ ..+.+|+|++|++
T Consensus 615 -G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~ 688 (711)
T TIGR00958 615 -GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK 688 (711)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999998 22 235899999999975 5678999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 689 -G~ive~Gt~ 697 (711)
T TIGR00958 689 -GSVVEMGTH 697 (711)
T ss_pred -CEEEEeeCH
Confidence 688888875
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=321.52 Aligned_cols=212 Identities=21% Similarity=0.321 Sum_probs=170.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc----ccceEEEEccCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~~~ 242 (1427)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 36999999999999999999999999999999999999876 899999998875432 23469999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.++...... ......... . ......++++++.+|+++..++
T Consensus 92 ~tv~~nl~~~~~~~~~---~~~~~~~~~-----------~-------------~~~~~~~~~~l~~~~l~~~~~~----- 139 (242)
T TIGR03411 92 LTVFENLELALPRDKS---VFASLFFRL-----------S-------------AEEKDRIEEVLETIGLADEADR----- 139 (242)
T ss_pred CCHHHHHHHhhhcccc---ccccccccc-----------H-------------HHHHHHHHHHHHHcCCchhhcC-----
Confidence 9999999986431100 000000000 0 0011236778999999764443
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.++.|||||||||+||||++.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|++.| ...++.++||++++|+
T Consensus 140 ~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH-~~~~~~~~~d~i~~l~ 216 (242)
T TIGR03411 140 LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEH-DMEFVRSIADKVTVLH 216 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEC-CHHHHHHhCCEEEEEE
Confidence 4557999999999999999999999999999999999999999999999854 689888755 4567888999999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|+++++|+.+++.
T Consensus 217 ~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 217 QGSVLAEGSLDQVQ 230 (242)
T ss_pred CCeEEeeCCHHHHh
Confidence 99999999988764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=320.98 Aligned_cols=216 Identities=25% Similarity=0.312 Sum_probs=173.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCce---eEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY---IEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~---~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 478889887652 2468999999999999999999999999999999999754321 379999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD----SLRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++.+|+.||+.+..... .....++..+.+++.++.+++. +..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 146 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKTPA-- 146 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCc--
Confidence 87642 134567999999999999999999998764322 1112233345566777777653 2334433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 147 ---TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 57999999999999999999999999999999999999999999999864 799999999986 4677899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 678887764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=285.07 Aligned_cols=198 Identities=28% Similarity=0.420 Sum_probs=169.6
Q ss_pred cccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc-------ccccceEEEEccCC
Q 000555 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-------STFARISGYVEQND 921 (1427)
Q Consensus 849 ~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~ 921 (1427)
.....||++|++.|++||.+||+|||||||||||-+|+|...+ .+|+|.+.|++... .-..+.+|+|+|..
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 4567899999999999999999999999999999999998663 57999999987543 12346799999999
Q ss_pred CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000555 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIF 1001 (1427)
Q Consensus 922 ~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~ill 1001 (1427)
.+.|++|..||+.....++-. +..+......+.++.+||.+..+.+. .+|||||+|||+||||++..|+|||
T Consensus 98 ~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 98 HLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEe
Confidence 999999999999988877642 22333445778899999987766654 5899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecCcEEE
Q 000555 1002 MDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 1002 lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1059 (1427)
-||||-+||..|...|.+++-.+.+ .|.|.|++||||. +...|||.+-|.+ |+++
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 9999999999999999999988764 5999999999975 5678999999986 5654
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=362.29 Aligned_cols=207 Identities=22% Similarity=0.278 Sum_probs=169.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
.++|+|+|++++|||.++|+|+||||||||+++|+|+++|. +|+|.+||+++++. ..++.++||+|++.+|+.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~- 429 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD- 429 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-
Confidence 35999999999999999999999999999999999999986 89999999998754 357899999999987765
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
|++|||.++. .. . +.++.+.++.+ -.++.++. |++..||.+|+.+
T Consensus 430 Ti~~NI~~~~---~~--~-------------------d~~i~~a~~~~---------gl~~~i~~--lp~Gldt~i~e~g 474 (592)
T PRK10790 430 TFLANVTLGR---DI--S-------------------EEQVWQALETV---------QLAELARS--LPDGLYTPLGEQG 474 (592)
T ss_pred hHHHHHHhCC---CC--C-------------------HHHHHHHHHHc---------CcHHHHHh--ccccccccccCCC
Confidence 9999999852 11 0 01111111111 01122222 5567789999865
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
. .||||||||++|||||+.+|+|++||||||+||+.++.+|.+.|+++.+ ++|+|++.|++ +....||+|++|++
T Consensus 475 ~-~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~ 549 (592)
T PRK10790 475 N-NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHR 549 (592)
T ss_pred C-CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEEC
Confidence 4 6999999999999999999999999999999999999999999998753 68888877776 66788999999999
Q ss_pred CeEEEecChHHHHH
Q 000555 404 GHLVYQGPRAEVLE 417 (1427)
Q Consensus 404 G~iv~~G~~~~~~~ 417 (1427)
|+++..|+++++.+
T Consensus 550 G~i~~~G~~~~L~~ 563 (592)
T PRK10790 550 GQAVEQGTHQQLLA 563 (592)
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999999874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.14 Aligned_cols=215 Identities=24% Similarity=0.291 Sum_probs=173.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 468889887652 245899999999999999999999999999999999975421 3579999999
Q ss_pred ccCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000555 903 YPKEQ----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGFP 974 (1427)
Q Consensus 903 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 974 (1427)
.+... ...++.++|++|++.+++ .||.||+.+..... .....+...+.+.++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 142 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSH---- 142 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcC----
Confidence 87531 234567999999998887 89999998764321 11122333456778888888753 22333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
...||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++
T Consensus 143 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~ 219 (249)
T PRK14253 143 -AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM 219 (249)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999875 689999999985 57778999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 220 -G~i~~~g~~ 228 (249)
T PRK14253 220 -GELVEHDDT 228 (249)
T ss_pred -CEEEEeCCH
Confidence 678887764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=313.54 Aligned_cols=201 Identities=25% Similarity=0.316 Sum_probs=181.1
Q ss_pred eeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc------cc-ccceEEEEccCCCCCC
Q 000555 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ------ST-FARISGYVEQNDIHSP 925 (1427)
Q Consensus 853 ~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~-~~~~~gyv~Q~~~~~~ 925 (1427)
.-++|+|++|+.||+..|||-||||||||+++|.+..+ +..|+|.++|.++.. .. .++.+++|+|+..++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 35789999999999999999999999999999999876 468999999987532 12 3457899999999999
Q ss_pred CCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000555 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005 (1427)
Q Consensus 926 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEP 1005 (1427)
+.||.||..|+..++ ..+++++++++.++++.+||....+... ++||||+||||.|||||+.+|+||+||||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998775 5788999999999999999999999876 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCC
Q 000555 1006 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 1006 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~ 1065 (1427)
+|+|||--+..+++-|.++.++ ++|||++|||.+ +.+..-|||.+|+ +|+++..|++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 9999999999999999888654 899999999987 6888999999997 47899988763
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=323.13 Aligned_cols=215 Identities=26% Similarity=0.332 Sum_probs=175.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 902 (1427)
.++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 589999998763 23589999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++. |++||+.+..... .....+...+.++++++.+++.+ ..+..
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 165 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRLHEN--- 165 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHhhCC---
Confidence 87642 1346789999999988886 9999998765432 11122233456788888888853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|+++ ++.+.+|++++|+
T Consensus 166 --~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 241 (272)
T PRK14236 166 --AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY 241 (272)
T ss_pred --cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999975 799999999975 4677899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 242 ~-G~i~~~g~~ 251 (272)
T PRK14236 242 M-GKLVEYGDT 251 (272)
T ss_pred C-CEEEecCCH
Confidence 6 678887764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=334.79 Aligned_cols=211 Identities=25% Similarity=0.407 Sum_probs=176.5
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++||+++++. ++.++|+|+|+++++||++||+|+||||||||++.|+|..+ +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 6899999998763 34579999999999999999999999999999999999765 3579999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR-------DALVGFPG 975 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~ 975 (1427)
.. ..+++.+++++|...+| .-|+++||.++. .+.+++ .+.++++.+||++.. |+.+|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~-----~~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN-----PDASDE----ELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC-----CCCCHH----HHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 43 34677889999977665 569999998653 233443 366788888887653 445664 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
++.||||||||++|||+|++|.++++|||||.|||+.|+++|++.+.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 578999999999999999999999999999999999999999999988764 899999999975 4678999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|+++..|..
T Consensus 548 Gkiie~G~~ 556 (573)
T COG4987 548 GKIIEEGTH 556 (573)
T ss_pred CeeeecCCH
Confidence 677777765
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=316.53 Aligned_cols=194 Identities=27% Similarity=0.424 Sum_probs=159.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCC-CCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDN-HIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~-~~~~ 242 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999875 99999999887542 23467999999874 4677
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
+||+||+.++....+.. .. + ....++++++.+||+...+ +
T Consensus 91 ~t~~~~l~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~~l~~~~~-----~ 130 (211)
T cd03225 91 PTVEEEVAFGLENLGLP-----------EE----------E--------------IEERVEEALELVGLEGLRD-----R 130 (211)
T ss_pred CcHHHHHHHHHHHcCCC-----------HH----------H--------------HHHHHHHHHHHcCcHhhhc-----C
Confidence 89999998864322110 00 0 0113566888899875443 3
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.++ ++|+|++.|+ ..++.++||+|++|+
T Consensus 131 ~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~-~~~~~~~~d~i~~l~ 208 (211)
T cd03225 131 SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHD-LDLLLELADRVIVLE 208 (211)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC-HHHHHHhCCEEEEEe
Confidence 45679999999999999999999999999999999999999999999998765 8899887554 567788899999999
Q ss_pred CCe
Q 000555 403 EGH 405 (1427)
Q Consensus 403 ~G~ 405 (1427)
+|+
T Consensus 209 ~G~ 211 (211)
T cd03225 209 DGK 211 (211)
T ss_pred CCC
Confidence 985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.95 Aligned_cols=202 Identities=23% Similarity=0.332 Sum_probs=172.2
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+++|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 478999987542 24589999999999999999999999999999999998653 579999999876
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
.....++.++|++|++.+++.+|++||+.+....+. . ...+.++++++.++|.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543345568999999988999999999988654321 1 12345678899999987777765 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
|++||++++.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|+++ ++.+.+|++++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999998888999999999986 57889999999863
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=325.66 Aligned_cols=216 Identities=24% Similarity=0.335 Sum_probs=171.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc--------cccceEEEEccCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--------HVQRTSAYISQTDN 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--------~~~~~~~yv~Q~~~ 238 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+...+|+|.++|+++... ..++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 4699999999999999999999999999999999999987522469999999887431 12457999999988
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
+++.+||+||+.++...... .. . +. .... . ...+.+++++++.+||++..+.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---~~---~---~~---~~~~-~--------------~~~~~~~~~~l~~~~l~~~~~~- 148 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---FW---R---TC---FSWF-T--------------REQKQRALQALTRVGMVHFAHQ- 148 (262)
T ss_pred cccCCcHHHHHHhhhccccc---ch---h---hh---cccc-c--------------HHHHHHHHHHHHHcCCHHHHhC-
Confidence 89999999999875321000 00 0 00 0000 0 0011246778999999754444
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
.+..|||||||||+|||||+.+|++++|||||+|||..+...+.+.|++++++.|+|+|++.|+ ..++.++||++
T Consensus 149 ----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~-~~~~~~~~d~i 223 (262)
T PRK09984 149 ----RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ-VDYALRYCERI 223 (262)
T ss_pred ----CccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEE
Confidence 4556999999999999999999999999999999999999999999999976568899987554 46678999999
Q ss_pred EEEeCCeEEEecChHHH
Q 000555 399 LLLSEGHLVYQGPRAEV 415 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~ 415 (1427)
++|++|++++.|+++++
T Consensus 224 ~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 224 VALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999998764
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=318.36 Aligned_cols=201 Identities=24% Similarity=0.328 Sum_probs=165.4
Q ss_pred eccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc--eeEEEEEECCccCCcccc-cceEEEEccCCC--CCCCCC
Q 000555 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG--YIEGDIKISGYPKEQSTF-ARISGYVEQNDI--HSPQVT 928 (1427)
Q Consensus 854 iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~lT 928 (1427)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999976521 157999999987654322 357999999974 557799
Q ss_pred HHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000555 929 VEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD---SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005 (1427)
Q Consensus 929 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEP 1005 (1427)
+.|++.+...... ....+..+.++++++.+++. +..+..+ ..||||||||++|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977643221 11233445688999999997 3445544 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1006 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1006 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|+|||+.+...+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999976 56778999999986 678877764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=320.59 Aligned_cols=201 Identities=22% Similarity=0.396 Sum_probs=167.0
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~lT 244 (1427)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5999999999999999999999999999999999999875 99999999987532 23567999999987776 69
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.++....+. ...+++.+++.+||+.. ..++.+
T Consensus 93 v~e~l~~~~~~~~~---------------------------------------~~~~~~~~l~~~~l~~~----~~~~~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKGE---------------------------------------KNVDVEYYLSIVGLNKE----YATRDV 129 (241)
T ss_pred HHHHHhcchhhcCc---------------------------------------HHHHHHHHHHHcCCCHH----HhhCCc
Confidence 99999875321100 00124567888898521 123455
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.++.|+|+|++.| ..+++.++||+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH-~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH-NMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec-cHHHHHHhCCEEEEEeCC
Confidence 6799999999999999999999999999999999999999999999987655889988654 556778899999999999
Q ss_pred eEEEecChHHHH
Q 000555 405 HLVYQGPRAEVL 416 (1427)
Q Consensus 405 ~iv~~G~~~~~~ 416 (1427)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999998764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=313.92 Aligned_cols=223 Identities=22% Similarity=0.324 Sum_probs=180.2
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC-C--ceeEEEEEECCc
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT-G--GYIEGDIKISGY 903 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~-~--~~~~G~i~i~g~ 903 (1427)
++.+|++.++... .+..++++||||++++||++||+|.|||||||+.++|.|... + ...+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 4678887655432 124579999999999999999999999999999999999764 2 346689999998
Q ss_pred cCCc---c---c-ccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCC-CHHHHHHHHHHHHHHcCCcccccccccC
Q 000555 904 PKEQ---S---T-FARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEV-SKNQRHEFVEEVMRLVELDSLRDALVGF 973 (1427)
Q Consensus 904 ~~~~---~---~-~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~vg~ 973 (1427)
++-. . . +.+.++|++|++ .+.|.+||.+-+.=..... ... +.++..+++.++++.++|.+.....-
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~-- 148 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPDPERRLK-- 148 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCCHHHHHh--
Confidence 6422 1 1 235799999996 5789999988776544332 112 34556778899999999986532221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEE
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLM 1052 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l 1052 (1427)
..+.+|||||||||.||.||+.+|++|+.||||++||...+.+|+++|+++.+ .|.|+|++|||+. -+.+.+|||+||
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 22468999999999999999999999999999999999999999999999986 6999999999987 488899999999
Q ss_pred ecCcEEEEccCC
Q 000555 1053 KRGGRVIYGGKL 1064 (1427)
Q Consensus 1053 ~~gg~~~~~g~~ 1064 (1427)
.. |++++.|+.
T Consensus 228 Ya-G~iVE~g~~ 238 (316)
T COG0444 228 YA-GRIVEEGPV 238 (316)
T ss_pred EC-cEEEEeCCH
Confidence 86 789998886
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=320.20 Aligned_cols=213 Identities=23% Similarity=0.334 Sum_probs=170.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCcc---cccceEEEEccCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIP 241 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~ 241 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. .+.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35999999999999999999999999999999999998742 12489999999987542 23567999999988888
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGN 321 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 321 (1427)
.+||+||+.++.+...... .. .+ ....++++++.+||.+..+. .-+
T Consensus 96 ~~tv~enl~~~~~~~~~~~---------~~----------~~--------------~~~~~~~~l~~~~l~~~~~~-~~~ 141 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVK---------SK----------KE--------------LQERVRWALEKAQLWDEVKD-RLD 141 (250)
T ss_pred CCcHHHHHHHHHHhccccC---------CH----------HH--------------HHHHHHHHHHHcCCCcchhh-hhc
Confidence 9999999998754321100 00 00 01135668888888542111 124
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. + ++|+|++.|+ ..++.+.||++++|
T Consensus 142 ~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~-~~~~~~~~d~i~~l 218 (250)
T PRK14247 142 APAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHF-PQQAARISDYVAFL 218 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCC-HHHHHHhcCEEEEE
Confidence 4566899999999999999999999999999999999999999999999984 3 6888886554 55778899999999
Q ss_pred eCCeEEEecChHHHH
Q 000555 402 SEGHLVYQGPRAEVL 416 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~ 416 (1427)
++|++++.|+.+++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 219 YKGQIVEWGPTREVF 233 (250)
T ss_pred ECCeEEEECCHHHHH
Confidence 999999999998874
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=315.44 Aligned_cols=195 Identities=24% Similarity=0.376 Sum_probs=162.0
Q ss_pred CeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCHHHHHH
Q 000555 172 DVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTVRETFD 250 (1427)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1427)
|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999875 899999999875432 2467999999998888999999998
Q ss_pred HHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChH
Q 000555 251 FAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330 (1427)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 330 (1427)
++...... ..+ ..+..++++++.+||++..++ .+..||||
T Consensus 93 ~~~~~~~~----------~~~-------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G 132 (211)
T cd03298 93 LGLSPGLK----------LTA-------------------------EDRQAIEVALARVGLAGLEKR-----LPGELSGG 132 (211)
T ss_pred cccccccC----------ccH-------------------------HHHHHHHHHHHHcCCHHHHhC-----CcccCCHH
Confidence 75321100 000 001235678899999754444 44579999
Q ss_pred HhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEec
Q 000555 331 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQG 410 (1427)
Q Consensus 331 qkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G 410 (1427)
||||++||++|+.+|++++|||||+|||..++..+.+.|+++.++.++|+|++. |...++.++||++++|++|+++..|
T Consensus 133 ~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~s-H~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVT-HQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999998766688999864 5566788899999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=364.77 Aligned_cols=213 Identities=26% Similarity=0.362 Sum_probs=176.8
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++++||+|+++. .++++|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 36999999998742 235699999999999999999999999999999999998763 57999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-------SLRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~ 974 (1427)
.++ ..+++.++||+|++.+++ .|++||+.++. +...+++ .++++++..++. +-.|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 654 456788999999998886 69999998642 1122333 355566666543 3457888754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+++||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||+|++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999999999875 4799999999974 5778999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 688888874
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=356.19 Aligned_cols=212 Identities=29% Similarity=0.437 Sum_probs=175.1
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++++||+|+++. +++.+|+|+|++++|||++||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEe
Confidence 46999999998741 234689999999999999999999999999999999998653 57999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 974 (1427)
.++ ..+++.++||+|++.+++ .|++||+.++. .+.+++ .+.++++..++.+ -.|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCHH----HHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 654 456788999999988876 69999997642 122332 3445555555433 357777754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 46899999999999999999999999999999999999999999999885 5899999999985 4567999999986
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 688888874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=321.87 Aligned_cols=215 Identities=27% Similarity=0.323 Sum_probs=173.9
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc-
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP- 904 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 904 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478999987653 2458999999999999999999999999999999999765 357999999986
Q ss_pred ----CCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000555 905 ----KEQS---T----FARISGYVEQNDI--HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-LRDAL 970 (1427)
Q Consensus 905 ----~~~~---~----~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 970 (1427)
+... . .++.++|++|++. +.+.+|+.||+.+..... ......+..+.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV--GARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999973 577889999987643211 11122234556788999999963 45554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceE
Q 000555 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1049 (1427)
Q Consensus 971 vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v 1049 (1427)
+ ..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. .+...+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4 579999999999999999999999999999999999999999999998764 899999999975 466689999
Q ss_pred EEEecCcEEEEccCC
Q 000555 1050 LLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1050 ~~l~~gg~~~~~g~~ 1064 (1427)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 688888764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=282.85 Aligned_cols=201 Identities=30% Similarity=0.411 Sum_probs=172.3
Q ss_pred ccccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-------ccceEEEEcc
Q 000555 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-------VQRTSAYISQ 235 (1427)
Q Consensus 163 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q 235 (1427)
.....+||++|++.|++||-++|+|||||||||||-+|+|+.+|+ +|+|.+-|+++.... ..+.+|+|+|
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 345678999999999999999999999999999999999999886 999999999886542 2478999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccc
Q 000555 236 TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCS 315 (1427)
Q Consensus 236 ~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 315 (1427)
.-.++|++|-.||+...+.+++-. .. +........|+.+||.+-.
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~--~~---------------------------------~~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGES--SA---------------------------------DSRAGAKALLEAVGLGKRL 140 (228)
T ss_pred eeeccccchhhhhccchhhhcCCc--cc---------------------------------cHHHHHHHHHHHhCccccc
Confidence 999999999999999987776521 00 0011245678999997533
Q ss_pred ccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhc
Q 000555 316 ETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLF 395 (1427)
Q Consensus 316 ~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~ 395 (1427)
+.++.+|||||+|||+||||+...|+|||-||||-.||..|..+|.+.|-.+.++.|.|.|+++|.| .+...|
T Consensus 141 -----~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc 213 (228)
T COG4181 141 -----THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARC 213 (228)
T ss_pred -----ccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhh
Confidence 2356689999999999999999999999999999999999999999999999899999999987665 678899
Q ss_pred CcEEEEeCCeEEE
Q 000555 396 DDLLLLSEGHLVY 408 (1427)
Q Consensus 396 D~vilL~~G~iv~ 408 (1427)
||.+-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999974
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=320.91 Aligned_cols=214 Identities=21% Similarity=0.296 Sum_probs=173.3
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc--eeEEEEEECC
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG--YIEGDIKISG 902 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~--~~~G~i~i~g 902 (1427)
..++++|+++.++ +.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3588999987651 24899999999999999999999999999999999976531 1579999999
Q ss_pred ccCCcccc-cceEEEEccCCC--CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCC
Q 000555 903 YPKEQSTF-ARISGYVEQNDI--HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS---LRDALVGFPGS 976 (1427)
Q Consensus 903 ~~~~~~~~-~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~ 976 (1427)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ... ..+.++++++.++|.+ ..+..+
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~----- 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLYP----- 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcCC-----
Confidence 87643322 357999999974 4567899998876433211 111 2256788999999976 334443
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999975 46678999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 678888764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=331.56 Aligned_cols=211 Identities=20% Similarity=0.275 Sum_probs=170.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
.++|+|+|++|++||+++|+|||||||||||++|+|+.++. .+.+|+|.++|+++... ..++.++||+|+++.
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35999999999999999999999999999999999998631 12489999999998532 346789999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
+ +.||+||+.|+....+.. ..+. .+..++.+++.++|.+..++.+
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~-----------~~~~-----------------------~~~~~~~~l~~~~L~~~l~~~~ 219 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIN-----------DRKI-----------------------LEKIVEKSLKSAALWDEVKDDL 219 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCC-----------hHHH-----------------------HHHHHHHHHHHcCCcchhhhhh
Confidence 6 579999999875432110 0000 0012455677788765545555
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
+. ...+|||||||||+|||||+.+|+|++|||||+|||+.+...+.++|+++.+ ++|+|++.|+ ...+.+.||+|+
T Consensus 220 ~~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~-l~~i~~~~Drii 295 (329)
T PRK14257 220 DK-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHS-MAQAQRISDETV 295 (329)
T ss_pred hC-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCC-HHHHHHhCCEEE
Confidence 54 4557999999999999999999999999999999999999999999999864 6898887555 556778899999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|++++.|+++++.
T Consensus 296 vl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 296 FFYQGWIEEAGETKTIF 312 (329)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999999985
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=317.33 Aligned_cols=206 Identities=25% Similarity=0.360 Sum_probs=172.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV 245 (1427)
+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|++..++.+|+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999875 899999999876432 34679999999988888999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.++....+... . .....++.+++.+||++..++. +.
T Consensus 90 ~~nl~~~~~~~~~~~----------------------~-------------~~~~~~~~~l~~~~l~~~~~~~-----~~ 129 (232)
T cd03300 90 FENIAFGLRLKKLPK----------------------A-------------EIKERVAEALDLVQLEGYANRK-----PS 129 (232)
T ss_pred HHHHHHHHHhcCCCH----------------------H-------------HHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 999988654332100 0 0011356788999997654443 45
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|+ ..++.++||++++|++|+
T Consensus 130 ~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~-~~~~~~~~d~i~~l~~G~ 208 (232)
T cd03300 130 QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD-QEEALTMSDRIAVMNKGK 208 (232)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999876558899997655 466788999999999999
Q ss_pred EEEecChHHHH
Q 000555 406 LVYQGPRAEVL 416 (1427)
Q Consensus 406 iv~~G~~~~~~ 416 (1427)
+++.|+.+++.
T Consensus 209 ~~~~~~~~~~~ 219 (232)
T cd03300 209 IQQIGTPEEIY 219 (232)
T ss_pred EEecCCHHHHH
Confidence 99999987764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=321.37 Aligned_cols=221 Identities=23% Similarity=0.296 Sum_probs=176.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 902 (1427)
.++++|+++.+. ...+|+|+||++++||+++|+|+||||||||+++|+|..++. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999988763 235899999999999999999999999999999999975431 1369999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 977 (1427)
.+... ..+++.++|++|+..+++ .|++||+.+...... ..+..+..+.+.++++.+++.+..+...+ ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87531 234567999999988888 899999987643221 11233344567889999988542211111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEecC-
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG- 1055 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~g- 1055 (1427)
.||||||||++|||+|+++|++|+|||||+|||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 577889999999863
Q ss_pred ---cEEEEccCC
Q 000555 1056 ---GRVIYGGKL 1064 (1427)
Q Consensus 1056 ---g~~~~~g~~ 1064 (1427)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 788888875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=329.92 Aligned_cols=206 Identities=22% Similarity=0.339 Sum_probs=167.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCc--------ccccceEEEEccCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE--------FHVQRTSAYISQTDN 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--------~~~~~~~~yv~Q~~~ 238 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. ...++.++|++|++.
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 35999999999999999999999999999999999999875 8999999988642 123567999999863
Q ss_pred -CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCc-cccc
Q 000555 239 -HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD-LCSE 316 (1427)
Q Consensus 239 -~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~ 316 (1427)
.+...||+||+.|+....+.. ..+ ....++.+++.++|+ ...+
T Consensus 101 ~~~~~~tv~enl~~~~~~~~~~-----------~~~------------------------~~~~~~~ll~~~~L~~~~~~ 145 (289)
T PRK13645 101 YQLFQETIEKDIAFGPVNLGEN-----------KQE------------------------AYKKVPELLKLVQLPEDYVK 145 (289)
T ss_pred hhhhhhHHHHHHHHHHHHcCCC-----------HHH------------------------HHHHHHHHHHHcCCChhHhc
Confidence 233469999999864322110 000 001256678888884 3333
Q ss_pred cccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcC
Q 000555 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 317 t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D 396 (1427)
+.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++.++|+|++.| ..+++.++||
T Consensus 146 -----~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH-~~~~~~~~~d 219 (289)
T PRK13645 146 -----RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTH-NMDQVLRIAD 219 (289)
T ss_pred -----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec-CHHHHHHhCC
Confidence 3456799999999999999999999999999999999999999999999987656889998755 4567889999
Q ss_pred cEEEEeCCeEEEecChHHHH
Q 000555 397 DLLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 397 ~vilL~~G~iv~~G~~~~~~ 416 (1427)
++++|++|++++.|+.+++.
T Consensus 220 ~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 220 EVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988874
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=318.14 Aligned_cols=204 Identities=27% Similarity=0.411 Sum_probs=171.2
Q ss_pred eeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCHHH
Q 000555 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTVRE 247 (1427)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~E 247 (1427)
+|+|+|++++|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999876 899999999876432 3467999999998898999999
Q ss_pred HHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCC
Q 000555 248 TFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV 327 (1427)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 327 (1427)
|+.++....+.. . .+. ...+.+.++.+||.+..++. ++.|
T Consensus 91 ~l~~~~~~~~~~--~-------------------~~~--------------~~~~~~~l~~~~l~~~~~~~-----~~~L 130 (235)
T cd03299 91 NIAYGLKKRKVD--K-------------------KEI--------------ERKVLEIAEMLGIDHLLNRK-----PETL 130 (235)
T ss_pred HHHHHHHHcCCC--H-------------------HHH--------------HHHHHHHHHHcCChhHHhcC-----cccC
Confidence 998864332110 0 000 11245678889997654443 4569
Q ss_pred ChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEE
Q 000555 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLV 407 (1427)
Q Consensus 328 SGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv 407 (1427)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++.++||++++|++|+++
T Consensus 131 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~-~~~~~~~~d~i~~l~~G~i~ 209 (235)
T cd03299 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD-FEEAWALADKVAIMLNGKLI 209 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999876568899997665 46778899999999999999
Q ss_pred EecChHHHH
Q 000555 408 YQGPRAEVL 416 (1427)
Q Consensus 408 ~~G~~~~~~ 416 (1427)
+.|+.+++.
T Consensus 210 ~~~~~~~~~ 218 (235)
T cd03299 210 QVGKPEEVF 218 (235)
T ss_pred EecCHHHHH
Confidence 999988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=323.32 Aligned_cols=210 Identities=21% Similarity=0.305 Sum_probs=167.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|++|++||+++|+||||||||||+++|+|.+++. .+.+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 35999999999999999999999999999999999998752 02489999999887431 235679999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++ +||+||+.|+.+..+.. ..+ ....++++++.+|+...... .
T Consensus 105 ~~-~tv~enl~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~l~~~~~~-~ 147 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN-----------KKD------------------------LDGVVENALRSAALWDETSD-R 147 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC-----------HHH------------------------HHHHHHHHHHHcCCCcchhh-h
Confidence 77 89999999875432210 000 00125667888887421111 1
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-+..+..|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++. + ++|+|++.|+ ..++.++||+|+
T Consensus 148 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~-~~~~~~~~d~i~ 224 (258)
T PRK14268 148 LKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHN-MQQAARISDYTG 224 (258)
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECC-HHHHHHhCCEEE
Confidence 134556799999999999999999999999999999999999999999999985 3 6898887554 567788999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|++++.|+++++.
T Consensus 225 ~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 225 FFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999998774
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=311.15 Aligned_cols=195 Identities=28% Similarity=0.346 Sum_probs=166.1
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 5678876552 24689999999999999999999999999999999998653 57999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 908 --STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 908 --~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
..+++.++|++|++.+++.+|++||+.+.... . ..+.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23566799999999888999999999875311 1 2345788999999988777665 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEE
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1052 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1052 (1427)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|+|+++|++. +....+|+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998777999999999975 577788998877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=324.78 Aligned_cols=207 Identities=21% Similarity=0.272 Sum_probs=169.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEEEccCCC--CCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDN--HIP 241 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~--~~~ 241 (1427)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999876 999999999875321 2356999999864 567
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCc-cccccccc
Q 000555 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD-LCSETVVG 320 (1427)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg 320 (1427)
.+||.|++.+..+.... .... + ....++.+++.+||. ...+
T Consensus 103 ~~tv~~~l~~~~~~~~~----------~~~~----------~--------------~~~~~~~~l~~~~l~~~~~~---- 144 (267)
T PRK15112 103 RQRISQILDFPLRLNTD----------LEPE----------Q--------------REKQIIETLRQVGLLPDHAS---- 144 (267)
T ss_pred chhHHHHHHHHHHhccC----------CCHH----------H--------------HHHHHHHHHHHcCCChHHHh----
Confidence 88999999886543210 0000 0 011356789999994 3333
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.++.++|||++.| ...++.++||++++
T Consensus 145 -~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH-~~~~~~~~~d~i~~ 222 (267)
T PRK15112 145 -YYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ-HLGMMKHISDQVLV 222 (267)
T ss_pred -cCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC-CHHHHHHhcCEEEE
Confidence 3456799999999999999999999999999999999999999999999987656889988755 45678889999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|++++.|+.+++.
T Consensus 223 l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 223 MHQGEVVERGSTADVL 238 (267)
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=322.48 Aligned_cols=215 Identities=21% Similarity=0.300 Sum_probs=173.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478999987663 2468999999999999999999999999999999999632 1 13579999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++. |++||+.+..... ........++.+.+.++.+++.+ ..+..+
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 162 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSSA-- 162 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--
Confidence 87642 1345679999999988875 9999998764322 11122223455777888888752 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 163 ---~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 163 ---LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 57999999999999999999999999999999999999999999999865 689999999975 4777899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 6 678887764
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=370.68 Aligned_cols=206 Identities=23% Similarity=0.327 Sum_probs=166.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++. ..++.++||+|++.+| +.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EG 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hc
Confidence 46999999999999999999999999999999999999986 99999999998664 3578999999998766 46
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
|++|||.++.. .. . +.++.+..+.+ ..++.++ .++...||.+|+.+
T Consensus 568 Ti~eNi~l~~~--~~---~------------------~~~i~~al~~~---------~l~~~i~--~lp~gl~t~i~e~G 613 (710)
T TIGR03796 568 TVRDNLTLWDP--TI---P------------------DADLVRACKDA---------AIHDVIT--SRPGGYDAELAEGG 613 (710)
T ss_pred cHHHHhhCCCC--CC---C------------------HHHHHHHHHHh---------CCHHHHH--hCcCcccceeccCC
Confidence 99999987410 00 0 00111111110 0111222 25567789999876
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
.+||||||||++||||++++|+|++||||||+||+.++.+|.+.|++ .++|+|++.|++ +....||+|++|++
T Consensus 614 -~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~ 686 (710)
T TIGR03796 614 -ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLER 686 (710)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeC
Confidence 47999999999999999999999999999999999999999999875 378998876665 56788999999999
Q ss_pred CeEEEecChHHHHH
Q 000555 404 GHLVYQGPRAEVLE 417 (1427)
Q Consensus 404 G~iv~~G~~~~~~~ 417 (1427)
|+++++|+++++.+
T Consensus 687 G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 687 GKVVQRGTHEELWA 700 (710)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=311.28 Aligned_cols=199 Identities=24% Similarity=0.312 Sum_probs=165.5
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 56788877652 2468999999999999999999999999999999999865 35799999998754
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000555 907 Q--STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 907 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 984 (1427)
. ..+++.++|++|++.+++.+|+.||+.+...... . ...+.++++++.++|.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345678999999999999999999988754321 1 22356788999999987777665 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEE
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1052 (1427)
Q Consensus 985 qrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1052 (1427)
||++||+||+++|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++. .+-..-++++++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999975 344444566555
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.72 Aligned_cols=210 Identities=21% Similarity=0.288 Sum_probs=165.7
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEECCeecCcc-----cccceEEEEccCCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSL--KKSGNITYNGYKLDEF-----HVQRTSAYISQTDNHI 240 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1427)
++|+|+|+++++||+++|+||||||||||+++|+|.++|.. +.+|+|.++|+++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 58999999999999999999999999999999999988631 2489999999886421 2356799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+ +||+||+.|+....+... . .+ ....++..++.+++.+... ..-
T Consensus 101 ~-~tv~eni~~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~l~-~~~ 144 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKD----------K----------KK--------------LDEIVEQSLKKSALWNEVK-DKL 144 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCC----------H----------HH--------------HHHHHHHHHHHhCCchhhH-HHH
Confidence 4 899999998754322100 0 00 0112456677777632110 112
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
+..++.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. + ++|+|++.| ...++.+++|++++
T Consensus 145 ~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH-~~~~~~~~~d~i~~ 221 (254)
T PRK14273 145 NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTH-NMQQAGRISDRTAF 221 (254)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeC-CHHHHHHhCCEEEE
Confidence 33456799999999999999999999999999999999999999999999985 3 688888655 45677889999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|+++.+|+++++.
T Consensus 222 l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 222 FLNGCIEEESSTDELF 237 (254)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999998874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=354.35 Aligned_cols=218 Identities=25% Similarity=0.334 Sum_probs=181.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 378999987652 2468999999999999999999999999999999999865 3579999999876
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhcc--C-Cc-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000555 906 EQST----FARISGYVEQNDIHSPQVTVEESLWFSANLR--L-SK-EVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977 (1427)
Q Consensus 906 ~~~~----~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~--~-~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 977 (1427)
.... .++.+||++|++.+++.+||+||+.++.... . .. ..+.++..+.++++++.++|.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 4311 2356999999999999999999998753211 0 00 0123344567889999999988878776 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
+||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. .+...+|++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999878999999999975 46678999999986 67
Q ss_pred EEEccCCC
Q 000555 1058 VIYGGKLG 1065 (1427)
Q Consensus 1058 ~~~~g~~~ 1065 (1427)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (510)
T PRK09700 223 SVCSGMVS 230 (510)
T ss_pred Eeeecchh
Confidence 88888764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=320.58 Aligned_cols=204 Identities=25% Similarity=0.327 Sum_probs=167.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCc---------ccccceEEEEccCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE---------FHVQRTSAYISQTD 237 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~---------~~~~~~~~yv~Q~~ 237 (1427)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. ...++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 35999999999999999999999999999999999999875 8999999987631 12346799999999
Q ss_pred CCCCCCCHHHHHHHH-HHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccc
Q 000555 238 NHIPELTVRETFDFA-ARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316 (1427)
Q Consensus 238 ~~~~~lTV~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 316 (1427)
.+++.+||+||+.+. ....+.. .. + ....++..++.+||+...+
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~gl~~~~~ 136 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLS-----------KD----------Q--------------ALARAEKLLERLRLKPYAD 136 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCC-----------HH----------H--------------HHHHHHHHHHHcCChhhhh
Confidence 899999999999753 2221110 00 0 0113567888999975444
Q ss_pred cccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcC
Q 000555 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 317 t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D 396 (1427)
. .++.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++.|+ ..++.+++|
T Consensus 137 ~-----~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~-~~~~~~~~d 209 (242)
T PRK11124 137 R-----FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHE-VEVARKTAS 209 (242)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhcC
Confidence 3 4567999999999999999999999999999999999999999999999864 48898887555 457778999
Q ss_pred cEEEEeCCeEEEecChHHH
Q 000555 397 DLLLLSEGHLVYQGPRAEV 415 (1427)
Q Consensus 397 ~vilL~~G~iv~~G~~~~~ 415 (1427)
++++|++|+++++|+++++
T Consensus 210 ~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 210 RVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEEECCEEEEeCCHHHh
Confidence 9999999999999998764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=324.86 Aligned_cols=215 Identities=23% Similarity=0.310 Sum_probs=173.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 902 (1427)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999987663 2358999999999999999999999999999999999632 1 12579999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD----SLRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++. ||+||+.+....+. ..+.....+.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988875 99999998654321 112223345677888888874 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
+..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. .+.+.+|++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 358999999999999999999999999999999999999999999999865 689999999976 4677899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 6 678888764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.17 Aligned_cols=210 Identities=22% Similarity=0.307 Sum_probs=166.0
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCeecCcc-----cccceEEEEccCCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLD--SSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNHI 240 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1427)
++|+|+|+++++||+++|+|||||||||||++|+|..+ +..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 59999999999999999999999999999999999864 1112489999999987531 2356799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+ .||+||+.++....+.. .. . .....++..++.+||.....+. -
T Consensus 100 ~-~tv~enl~~~~~~~~~~--~~--------~------------------------~~~~~~~~~l~~~~l~~~~~~~-~ 143 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVK--DK--------A------------------------YLAERVERSLRHAALWDEVKDR-L 143 (253)
T ss_pred c-CcHHHHHHHHHHHcCCC--CH--------H------------------------HHHHHHHHHHHHcCCchhhhHH-h
Confidence 7 59999999875432210 00 0 0011245677778875321111 2
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
++.++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. + ++|+|++.| ...++.++||+|++
T Consensus 144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH-~~~~~~~~~d~v~~ 220 (253)
T PRK14242 144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTH-NMQQAARVSDVTAF 220 (253)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEe-cHHHHHHhCCEEEE
Confidence 34566899999999999999999999999999999999999999999999984 3 688888755 45677889999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|+++..|+++++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 221 FYMGKLIEVGPTEQIF 236 (253)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=347.35 Aligned_cols=123 Identities=24% Similarity=0.349 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 000555 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL-RDALVGFPGSSGLSTEQRKRLTIAVELVA---NPSIIF 1001 (1427)
Q Consensus 926 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~~---~p~ill 1001 (1427)
++||.|.+.|...+. . .....++++.+||... .+..+ ..||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467778777765432 1 1124577888999753 44443 5799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCcEEEEccCC
Q 000555 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYGGKL 1064 (1427)
Q Consensus 1002 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~g~~ 1064 (1427)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ....+|++++|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 456799999994 57899998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=357.86 Aligned_cols=201 Identities=28% Similarity=0.423 Sum_probs=168.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|++||.++++.. .++.++||+|++.+|+ .
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-A 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-c
Confidence 36999999999999999999999999999999999999986 999999999987643 5678999999987665 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCC------cccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGL------DLCSET 317 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~~t 317 (1427)
|++||+.++..- . .+++ +.++++..|+ ++..||
T Consensus 429 ti~~Ni~~~~~~--~---------------------~~~~------------------i~~al~~~~l~~~i~~p~GldT 467 (574)
T PRK11160 429 TLRDNLLLAAPN--A---------------------SDEA------------------LIEVLQQVGLEKLLEDDKGLNA 467 (574)
T ss_pred cHHHHhhcCCCc--c---------------------CHHH------------------HHHHHHHcCCHHHHcCccccCc
Confidence 999999885210 0 0011 2223333333 456789
Q ss_pred ccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCc
Q 000555 318 VVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 318 ~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~ 397 (1427)
.+|+.+. .||||||||++|||+++.+|++++||||||+||+.++..|.+.|+++. .++|+|++.|++ +..+.||+
T Consensus 468 ~vge~g~-~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~--~~~~~~d~ 542 (574)
T PRK11160 468 WLGEGGR-QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRL--TGLEQFDR 542 (574)
T ss_pred hhcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCh--hHHHhCCE
Confidence 9998754 699999999999999999999999999999999999999999999874 378988877776 45677999
Q ss_pred EEEEeCCeEEEecChHHHHH
Q 000555 398 LLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 398 vilL~~G~iv~~G~~~~~~~ 417 (1427)
|++|++|++++.|+++++.+
T Consensus 543 i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 543 ICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999864
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=319.40 Aligned_cols=215 Identities=24% Similarity=0.310 Sum_probs=172.8
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--c-eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 902 (1427)
.++++|+++++. .+++|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478999988663 24589999999999999999999999999999999997541 1 2579999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+... ...++.++|++|++.+++ .||+||+.+...... ....+...+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 124567999999988876 799999987643221 1112233456788889888842 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 358999999999999999999999999999999999999999999999854 789999999975 4677899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 6 577777764
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=296.42 Aligned_cols=206 Identities=25% Similarity=0.403 Sum_probs=179.3
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc---ccccceEEEEccCCCCCCC
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQNDIHSPQ 926 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 926 (1427)
+.+.+|+++|..|++|.+++|+|||||||||||.++++... ..+|+|.++|.+... ..+++.++...|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 46789999999999999999999999999999999998765 358999999998643 4567778899999988899
Q ss_pred CCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000555 927 VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1006 (1427)
Q Consensus 927 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPT 1006 (1427)
+||+|-+.|+..-. ......++.+..+++.++.++|+++.|... .+||||||||.-||+.++++.+.++||||.
T Consensus 90 lTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 99999999974322 223334556678999999999999999987 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCC
Q 000555 1007 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 1007 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~ 1065 (1427)
++||...+..+|+.||+++++ |+||+++.||.+. .-.+.|+|+-|++ |+++..|++.
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~ 221 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPD 221 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHH
Confidence 999999999999999999875 9999999999874 4456799999986 7999999875
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=320.40 Aligned_cols=209 Identities=20% Similarity=0.277 Sum_probs=166.4
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCeecCcc-----cccceEEEEccCCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLD--SSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNHI 240 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1427)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 59999999999999999999999999999999999986 2113489999999987421 2356799999998777
Q ss_pred CCCCHHHHHHHHHHhc-CCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 241 PELTVRETFDFAARWQ-GANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
+ .||+||+.++.... +.. .. + ...+++++++.+|+........
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~-----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~ 150 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS-----------RA----------E--------------MDERVEWALTKAALWNEVKDKL 150 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC-----------HH----------H--------------HHHHHHHHHHHcCCChhhHHHH
Confidence 7 89999998865432 110 00 0 0113566788888743211111
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
++....|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. + ++|+|++.|+ ..++.+++|+++
T Consensus 151 -~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~-~~~~~~~~d~i~ 226 (260)
T PRK10744 151 -HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHN-MQQAARCSDYTA 226 (260)
T ss_pred -hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCC-HHHHHHhCCEEE
Confidence 34456799999999999999999999999999999999999999999999984 3 6788886554 567778999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|+++..|+.+++.
T Consensus 227 ~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 227 FMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988874
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=319.55 Aligned_cols=215 Identities=27% Similarity=0.305 Sum_probs=173.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478999987653 246899999999999999999999999999999999964311 1479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+... ...++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+ ..+..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87642 2345679999999988874 99999998754331 1122333456778888888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
...||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ ++|||+++|++. .+.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999875 689999999975 4667899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14261 223 L-GKLIEFDKT 232 (253)
T ss_pred C-CEEEEcCCH
Confidence 6 678887764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=312.66 Aligned_cols=199 Identities=22% Similarity=0.331 Sum_probs=164.5
Q ss_pred eeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-cccceEEEEccCCCCCCCCCHHH
Q 000555 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-HVQRTSAYISQTDNHIPELTVRE 247 (1427)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~~~~~~~lTV~E 247 (1427)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 457999999999999999999999999999999999876 99999999987542 23567999999998898999999
Q ss_pred HHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCC
Q 000555 248 TFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV 327 (1427)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 327 (1427)
|+.+....... . . ...+..++++++.+||++..+ +.++.|
T Consensus 90 n~~~~~~~~~~---~------------------~--------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~L 129 (213)
T TIGR01277 90 NIGLGLHPGLK---L------------------N--------------AEQQEKVVDAAQQVGIADYLD-----RLPEQL 129 (213)
T ss_pred HHHhHhhccCC---c------------------c--------------HHHHHHHHHHHHHcCcHHHhh-----CCcccC
Confidence 99875321100 0 0 000123567889999975443 345679
Q ss_pred ChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEE
Q 000555 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLV 407 (1427)
Q Consensus 328 SGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv 407 (1427)
|||||||++||++++.+|++++|||||+|||..++..+.+.|+++.++.++|+|++.|+ ..++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~-~~~~~~~~d~v~~l~~g~i~ 208 (213)
T TIGR01277 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH-LSDARAIASQIAVVSQGKIK 208 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHhhcCeEEEEECCeEE
Confidence 99999999999999999999999999999999999999999999876557899886554 56778899999999999999
Q ss_pred EecC
Q 000555 408 YQGP 411 (1427)
Q Consensus 408 ~~G~ 411 (1427)
..|.
T Consensus 209 ~~~~ 212 (213)
T TIGR01277 209 VVSD 212 (213)
T ss_pred EecC
Confidence 8875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=324.83 Aligned_cols=210 Identities=20% Similarity=0.338 Sum_probs=171.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 36999999999999999999999999999999999999875 89999999987542 2345799999999888889
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||+||+.++..-... .... . .+ .....++++++.+||++.. ++.
T Consensus 97 tv~~~~~~~~~~~~~------~~~~-----------~-~~-------------~~~~~~~~~l~~~~l~~~~-----~~~ 140 (265)
T PRK10253 97 TVQELVARGRYPHQP------LFTR-----------W-RK-------------EDEEAVTKAMQATGITHLA-----DQS 140 (265)
T ss_pred cHHHHHHhCcccccc------cccC-----------C-CH-------------HHHHHHHHHHHHcCCHHHh-----cCC
Confidence 999999874210000 0000 0 00 0012356788999997543 445
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
++.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|+ ..++.++||++++|++
T Consensus 141 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~-~~~~~~~~d~i~~l~~ 219 (265)
T PRK10253 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD-LNQACRYASHLIALRE 219 (265)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 667999999999999999999999999999999999999999999999876558899887554 5678899999999999
Q ss_pred CeEEEecChHHHH
Q 000555 404 GHLVYQGPRAEVL 416 (1427)
Q Consensus 404 G~iv~~G~~~~~~ 416 (1427)
|++++.|+++++.
T Consensus 220 G~i~~~g~~~~~~ 232 (265)
T PRK10253 220 GKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988765
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=318.35 Aligned_cols=219 Identities=24% Similarity=0.312 Sum_probs=172.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCc---eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 902 (1427)
.++++|+++.+. ++.+|+|+|++|++|++++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 378899987653 245899999999999999999999999999999999975431 2369999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 977 (1427)
.+... ..+++.++|++|++.+++. |++||+.+....+.. ...+...+.++++++.+++.+....... ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 2346779999999988875 999999987543211 1122234556778888887532111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ .+.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 899999999999999999999999999999999999999999999985 5899999999976 46778899999986 67
Q ss_pred EEEccCC
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~g~~ 1064 (1427)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 7777764
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=359.34 Aligned_cols=212 Identities=27% Similarity=0.434 Sum_probs=177.4
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+||+|+++. +++++|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46999999998742 22468999999999999999999999999999999999865 357999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc------ccccccCCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL------RDALVGFPG 975 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~------~~~~vg~~~ 975 (1427)
..+ ..+++.++||+|++.+++ .|++||+.++.. +.++ +.++++++..++.+. .||.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAP-----NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCC-----ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 654 456788999999998876 599999987531 2222 346777888887654 46777654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
+..||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-
Confidence 46799999999999999999999999999999999999999999999885 4899999999986 3567999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 549 G~i~~~g~~ 557 (574)
T PRK11160 549 GQIIEQGTH 557 (574)
T ss_pred CeEEEeCCH
Confidence 688888874
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=319.34 Aligned_cols=212 Identities=19% Similarity=0.261 Sum_probs=168.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+++..+.+|+|+++|+++... ..++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 3699999999999999999999999999999999999753113489999999987643 23567999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||+||+.++...++... .++ ....+++.+++.+||....... -++.
T Consensus 94 tv~eni~~~~~~~~~~~--------------------~~~-------------~~~~~~~~~l~~~~l~~~~~~~-~~~~ 139 (246)
T PRK14269 94 SIYENISYAPKLHGMIK--------------------NKD-------------EEEALVVDCLQKVGLFEEVKDK-LKQN 139 (246)
T ss_pred cHHHHhhhHHhhcCccc--------------------ChH-------------HHHHHHHHHHHHcCCChhhhHH-hcCC
Confidence 99999998654322100 000 0011256678888885321111 2345
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
.+.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. + ++|+|++.| ...++.+.+|++++|++
T Consensus 140 ~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH-~~~~~~~~~d~i~~l~~ 216 (246)
T PRK14269 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTH-NMQQGKRVADYTAFFHL 216 (246)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEec-CHHHHHhhCcEEEEEEC
Confidence 56899999999999999999999999999999999999999999999985 3 789888655 45678889999999999
Q ss_pred CeEEEecChHHHH
Q 000555 404 GHLVYQGPRAEVL 416 (1427)
Q Consensus 404 G~iv~~G~~~~~~ 416 (1427)
|++++.|+.+++.
T Consensus 217 G~i~~~g~~~~~~ 229 (246)
T PRK14269 217 GELIEFGESKEFF 229 (246)
T ss_pred CEEEEECCHHHHH
Confidence 9999999988764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=321.78 Aligned_cols=213 Identities=24% Similarity=0.320 Sum_probs=172.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 902 (1427)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999987662 24589999999999999999999999999999999997542 13579999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++. ||+||+.+....+. ... ...+.++++++.+++.+ ..+..+
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~-- 178 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSG-- 178 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCc--
Confidence 87532 2346789999999888875 99999988654321 122 23456788999998853 334333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEE-EE
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL-LM 1052 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~-~l 1052 (1427)
..||||||||++||++|+.+|+||||||||+|||+.+...+.+.|+++++ ++|||+++|++. .+...+|+++ +|
T Consensus 179 ---~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 179 ---LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 58999999999999999999999999999999999999999999999976 489999999975 4667899976 56
Q ss_pred ecCcEEEEccCC
Q 000555 1053 KRGGRVIYGGKL 1064 (1427)
Q Consensus 1053 ~~gg~~~~~g~~ 1064 (1427)
++ |+++..|+.
T Consensus 254 ~~-G~i~~~g~~ 264 (285)
T PRK14254 254 TG-GELVEFDDT 264 (285)
T ss_pred eC-CEEEEeCCH
Confidence 65 677777764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=324.36 Aligned_cols=210 Identities=23% Similarity=0.348 Sum_probs=170.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 36999999999999999999999999999999999999875 89999999887432 2346799999998788889
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||.||+.++...... . .. .... .....++.+++.+||++..++ .
T Consensus 101 tv~e~l~~~~~~~~~---~---~~-----------~~~~--------------~~~~~~~~~l~~~~l~~~~~~-----~ 144 (265)
T PRK10575 101 TVRELVAIGRYPWHG---A---LG-----------RFGA--------------ADREKVEEAISLVGLKPLAHR-----L 144 (265)
T ss_pred cHHHHHHhCcccccc---c---cc-----------CCCH--------------HHHHHHHHHHHHcCCHHHhcC-----C
Confidence 999999875310000 0 00 0000 001235678899999754444 3
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
+..|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++.+.||+|++|++
T Consensus 145 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~-~~~i~~~~d~i~~l~~ 223 (265)
T PRK10575 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD-INMAARYCDYLVALRG 223 (265)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 456999999999999999999999999999999999999999999999876558898887554 5678899999999999
Q ss_pred CeEEEecChHHHH
Q 000555 404 GHLVYQGPRAEVL 416 (1427)
Q Consensus 404 G~iv~~G~~~~~~ 416 (1427)
|++++.|+.+++.
T Consensus 224 G~i~~~~~~~~~~ 236 (265)
T PRK10575 224 GEMIAQGTPAELM 236 (265)
T ss_pred CeEEEecCHHHhc
Confidence 9999999988764
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=313.60 Aligned_cols=192 Identities=27% Similarity=0.426 Sum_probs=159.2
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcccccceEEEEccCCCCCCCCCH
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTV 929 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 929 (1427)
+++++|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 45679999999999999999999999999999999999765 358999999976421 1112334578999
Q ss_pred HHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000555 930 EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1427)
Q Consensus 930 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgL 1009 (1427)
+||+.+..... ..+..+..+.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 102 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99998765432 1233444556788999999988877766 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
|+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998777899999999975 46678999999986 6776654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=319.78 Aligned_cols=211 Identities=21% Similarity=0.277 Sum_probs=169.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. .+.+|+|.++|+++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 36999999999999999999999999999999999998642 13589999999987532 235679999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++ .||+||+.++....+... +. + ....++++++.++|.++.+..
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~i~~~- 156 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD----------KK----------V--------------LDEIVETSLKQAALWDQVKDD- 156 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC----------HH----------H--------------HHHHHHHHHHHcCCCchhhhh-
Confidence 77 699999998643221100 00 0 011355678888885432222
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-++.++.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. + +.|+|++.|+ .+++.++||+++
T Consensus 157 ~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~-~~~~~~~~d~i~ 233 (267)
T PRK14237 157 LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHN-MQQAARASDYTA 233 (267)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecC-HHHHHHhcCEEE
Confidence 245567899999999999999999999999999999999999999999999984 3 6888887655 457889999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|++++.|+.+++.
T Consensus 234 ~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 234 FFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999998874
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=317.09 Aligned_cols=202 Identities=25% Similarity=0.390 Sum_probs=167.6
Q ss_pred CeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCHHHHHH
Q 000555 172 DVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTVRETFD 250 (1427)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1427)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999875 899999999875432 2457999999998899999999998
Q ss_pred HHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChH
Q 000555 251 FAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330 (1427)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 330 (1427)
++... .. . ... ....+++++++.+||++..++ .+..||||
T Consensus 94 ~~~~~-~~--~-------~~~-------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G 133 (232)
T PRK10771 94 LGLNP-GL--K-------LNA-------------------------AQREKLHAIARQMGIEDLLAR-----LPGQLSGG 133 (232)
T ss_pred ccccc-cc--C-------CCH-------------------------HHHHHHHHHHHHcCcHHHHhC-----CcccCCHH
Confidence 75321 00 0 000 001235678899999754444 44579999
Q ss_pred HhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCeEEEec
Q 000555 331 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQG 410 (1427)
Q Consensus 331 qkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~iv~~G 410 (1427)
|||||+||++++.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|+ ..++.+++|++++|++|++++.|
T Consensus 134 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~-~~~~~~~~d~i~~l~~g~i~~~g 212 (232)
T PRK10771 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS-LEDAARIAPRSLVVADGRIAWDG 212 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999876668899987554 55778899999999999999999
Q ss_pred ChHHHHH
Q 000555 411 PRAEVLE 417 (1427)
Q Consensus 411 ~~~~~~~ 417 (1427)
+.+++.+
T Consensus 213 ~~~~~~~ 219 (232)
T PRK10771 213 PTDELLS 219 (232)
T ss_pred CHHHHHh
Confidence 9887753
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=316.85 Aligned_cols=206 Identities=26% Similarity=0.404 Sum_probs=171.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-ccceEEEEccCCCCCCCCCH
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-VQRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV 245 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++..|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 36999999999999999999999999999999999999875 899999999875432 24679999999988888999
Q ss_pred HHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCC
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 325 (1427)
+||+.+..+..+.. ..+ ....++++++.+++....+ +.++
T Consensus 90 ~enl~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~~l~~~~~-----~~~~ 129 (237)
T TIGR00968 90 RDNIAFGLEIRKHP-----------KAK------------------------IKARVEELLELVQLEGLGD-----RYPN 129 (237)
T ss_pred HHHHHhHHHhcCCC-----------HHH------------------------HHHHHHHHHHHcCCHhHhh-----CChh
Confidence 99998865432210 000 0012466788888864443 4456
Q ss_pred CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCCe
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 ~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G~ 405 (1427)
.||||||||++||++|+.+|++++|||||+|||..+...+.+.|+++.++.++|+|++.|++ .++.++||++++|++|+
T Consensus 130 ~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~ 208 (237)
T TIGR00968 130 QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGK 208 (237)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998665578999976654 56788999999999999
Q ss_pred EEEecChHHHH
Q 000555 406 LVYQGPRAEVL 416 (1427)
Q Consensus 406 iv~~G~~~~~~ 416 (1427)
+++.|+.+++.
T Consensus 209 i~~~~~~~~~~ 219 (237)
T TIGR00968 209 IEQIGSPDEVY 219 (237)
T ss_pred EEEecCHHHHH
Confidence 99999988874
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=321.55 Aligned_cols=219 Identities=24% Similarity=0.304 Sum_probs=176.8
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 902 (1427)
.+.++|++++++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 579999998763 24689999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000555 903 YPKEQ----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSG 978 (1427)
Q Consensus 903 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 978 (1427)
.+... ..+++.++|++|++.+++ .|++||+.+..... ...+.++..+.+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87542 234667999999988887 89999998764322 112334444566788899998653221111 12358
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEE
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058 (1427)
Q Consensus 979 LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1058 (1427)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999975 56788999999986 688
Q ss_pred EEccCC
Q 000555 1059 IYGGKL 1064 (1427)
Q Consensus 1059 ~~~g~~ 1064 (1427)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 888764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=315.56 Aligned_cols=200 Identities=30% Similarity=0.412 Sum_probs=158.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCC--CCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHI--PELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~--~~lT 244 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+. ..+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999876 999999998764 2456799999987653 3479
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+||+.++...... . ... ... .....++.+++.+||++..++ .+
T Consensus 87 v~e~l~~~~~~~~~---~---~~~-----------~~~--------------~~~~~~~~~l~~~~l~~~~~~-----~~ 130 (213)
T cd03235 87 VRDVVLMGLYGHKG---L---FRR-----------LSK--------------ADKAKVDEALERVGLSELADR-----QI 130 (213)
T ss_pred HHHHHHhccccccc---c---ccC-----------CCH--------------HHHHHHHHHHHHcCCHHHHhC-----Cc
Confidence 99999885321100 0 000 000 001235678899999754443 45
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.| ...++.++||++++|++|
T Consensus 131 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH-~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 131 GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTH-DLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeC-CHHHHHHhcCEEEEEcCc
Confidence 57999999999999999999999999999999999999999999999876 5889888755 456778899999999886
Q ss_pred eEEEec
Q 000555 405 HLVYQG 410 (1427)
Q Consensus 405 ~iv~~G 410 (1427)
+++.|
T Consensus 209 -~~~~g 213 (213)
T cd03235 209 -VVASG 213 (213)
T ss_pred -EeecC
Confidence 66544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=333.44 Aligned_cols=210 Identities=26% Similarity=0.383 Sum_probs=172.0
Q ss_pred ccccCCccccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEE
Q 000555 157 LRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYI 233 (1427)
Q Consensus 157 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv 233 (1427)
+++.++. ++.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++... .+++.++.+
T Consensus 342 vsF~y~~-~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 342 VSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred ceeecCC-CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhh
Confidence 3444443 2457999999999999999999999999999999999999986 99999999987654 356789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCC--
Q 000555 234 SQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGL-- 311 (1427)
Q Consensus 234 ~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL-- 311 (1427)
+|.. |+...|+|+||..+.. +..- +..-++++.+||
T Consensus 418 ~Qr~-hlF~~Tlr~NL~lA~~--------------------------~AsD---------------Eel~~aL~qvgL~~ 455 (573)
T COG4987 418 TQRV-HLFSGTLRDNLRLANP--------------------------DASD---------------EELWAALQQVGLEK 455 (573)
T ss_pred ccch-HHHHHHHHHHHhhcCC--------------------------CCCH---------------HHHHHHHHHcCHHH
Confidence 9976 5556799999988521 1000 012234444444
Q ss_pred -----ccccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Q 000555 312 -----DLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQ 386 (1427)
Q Consensus 312 -----~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q 386 (1427)
++..||.+|+.+. .||||||||++|||+|+++.++++|||||.|||+.|+.++++.|.+-++ |+|+++++|+
T Consensus 456 l~~~~p~gl~t~lge~G~-~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHr 532 (573)
T COG4987 456 LLESAPDGLNTWLGEGGR-RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHR 532 (573)
T ss_pred HHHhChhhhhchhccCCC-cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecc
Confidence 3466788988765 5999999999999999999999999999999999999999999988654 8999998776
Q ss_pred CchhHHhhcCcEEEEeCCeEEEecChHHHHH
Q 000555 387 PPPETFDLFDDLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 387 ~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 417 (1427)
-. -.+.||+|++|++|+++++|++++++.
T Consensus 533 L~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 533 LR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred cc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 53 468999999999999999999999874
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=322.40 Aligned_cols=210 Identities=23% Similarity=0.326 Sum_probs=171.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++. +...+|+|||++|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999887641 23458999999999999999999999999999999999864 369999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF------PGS 976 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~ 976 (1427)
.. ..+++.++||+|++.+++. |++||+.... ..+. +.+.+.++.++|.+..+...+. +++
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 3456789999999999874 9999995321 1122 3456778888887655544321 134
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
..||||||||++|||||+.+|+||+|||||++||+.+...+++.|++.. .++|||+++|+++ ....+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEecC-C
Confidence 6799999999999999999999999999999999999999999999875 4899999999974 3456999999986 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
++++.|++
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 77888875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=322.44 Aligned_cols=212 Identities=22% Similarity=0.300 Sum_probs=168.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|. .+.+|+|+++|+++... ..++.++|++|++..
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 35999999999999999999999999999999999998741 12489999999987531 235679999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++. ||+||+.|+.+.++... . + .+ ....++++++.+||.+.....
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~-~--------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~- 156 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLAR-S--------K----------AE--------------LDEIVETSLRKAGLWEEVKDR- 156 (267)
T ss_pred CCC-cHHHHHHHHHHhccccc-c--------h----------HH--------------HHHHHHHHHHHcCCchhhhHH-
Confidence 774 99999998754322100 0 0 00 011356678888885421111
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-+..++.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|++.|+ ..++.++||+++
T Consensus 157 ~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~-~~~~~~~~d~v~ 233 (267)
T PRK14235 157 LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHS-MQQAARVSQRTA 233 (267)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcC-HHHHHhhCCEEE
Confidence 1344667999999999999999999999999999999999999999999999854 6788887554 567788999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|+++.+|+.+++.
T Consensus 234 ~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 234 FFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=350.70 Aligned_cols=219 Identities=21% Similarity=0.353 Sum_probs=179.6
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|...+++.+|+|.++|.+..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 57888887652 24689999999999999999999999999999999997653224799999998764
Q ss_pred ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhccCCc-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCC
Q 000555 907 QST----FARISGYVEQNDIHSPQVTVEESLWFSANLRLSK-EVSKNQRHEFVEEVMRLVELDSLR-DALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~~~----~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LS 980 (1427)
... .++.+|||+|++.+++.+||+||+.+........ ....++..+.++++++.+++.+.. +..+ ..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 321 2356999999998999999999998864332111 122334456788999999997654 3444 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. .+.+.+|++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999975 46778999999986 57777
Q ss_pred ccCCC
Q 000555 1061 GGKLG 1065 (1427)
Q Consensus 1061 ~g~~~ 1065 (1427)
.|+..
T Consensus 222 ~~~~~ 226 (500)
T TIGR02633 222 TKDMS 226 (500)
T ss_pred ecCcc
Confidence 77664
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=317.60 Aligned_cols=215 Identities=24% Similarity=0.312 Sum_probs=171.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--Cc-eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478999987653 2458999999999999999999999999999999999643 11 2479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++ .|++||+.+....+.. ...+...+.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 234567999999988888 6999999886543211 112222345667788877642 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. .+.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 589999999986 4677899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 677777764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=358.97 Aligned_cols=210 Identities=25% Similarity=0.358 Sum_probs=177.2
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+|++|.++. ++++|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 46899999998741 23589999999999999999999999999999999998763 47999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 974 (1427)
.++ ..+++.++||+|++.+++. |++||+.++. +.++ +.++++++.+|+.+ -.|+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 4578899999999999885 9999998752 1222 33667777777653 346777653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1054 (1427)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|+++|+++ ....+|+|++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999998864 699999999974 5677999999985
Q ss_pred CcEEEEccCC
Q 000555 1055 GGRVIYGGKL 1064 (1427)
Q Consensus 1055 gg~~~~~g~~ 1064 (1427)
|+++..|+.
T Consensus 550 -G~i~~~G~~ 558 (592)
T PRK10790 550 -GQAVEQGTH 558 (592)
T ss_pred -CEEEEEcCH
Confidence 788888875
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=301.39 Aligned_cols=168 Identities=28% Similarity=0.441 Sum_probs=148.0
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++ ...+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 5778876552 2358999999999999999999999999999999999765 357999999987543
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 908 --STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 908 --~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
..+++.++|++|++.+++..|++||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998899999999863 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877899999999975 566789999999875
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=320.08 Aligned_cols=213 Identities=24% Similarity=0.338 Sum_probs=169.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCc--c---cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDE--F---HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~~~~ 239 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ .+.+|+|+++|+++.. . ..++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 35999999999999999999999999999999999998762 1248999999998752 1 235679999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++.+||+||+.++....+... . . .+ ....++++++.+||...... .
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~-~--------~----------~~--------------~~~~~~~~l~~~~l~~~~~~-~ 142 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVK-S--------K----------KE--------------LDERVEWALKKAALWDEVKD-R 142 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccC-C--------H----------HH--------------HHHHHHHHHHHcCCccchhh-h
Confidence 999999999998654321100 0 0 00 01124567788887432111 1
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-++.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|+ ..++.++||+|+
T Consensus 143 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~-~~~~~~~~d~i~ 219 (253)
T PRK14267 143 LNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHS-PAQAARVSDYVA 219 (253)
T ss_pred hccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECC-HHHHHhhCCEEE
Confidence 2345668999999999999999999999999999999999999999999999854 5888887554 567788999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|++++.|+++++.
T Consensus 220 ~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 220 FLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998774
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=317.75 Aligned_cols=219 Identities=20% Similarity=0.249 Sum_probs=175.8
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--c-eeEEEEEEC
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--G-YIEGDIKIS 901 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~ 901 (1427)
..+..+++++++ +++.+|+|+|++++|||+++|+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 457777777654 235699999999999999999999999999999999997642 1 257999999
Q ss_pred CccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000555 902 GYPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976 (1427)
Q Consensus 902 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 976 (1427)
|.+... ..+++.++|++|++.++ .+|+.||+.+....+. . ..+..+.++++++.+++.+..+...+ ...
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987532 23456799999998877 5999999998765431 1 12234568889999998643222221 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe---
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK--- 1053 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~--- 1053 (1427)
+.||||||||++|||||+++|++|+|||||+|||+.+...+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 4778899999996
Q ss_pred ----cCcEEEEccCC
Q 000555 1054 ----RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ----~gg~~~~~g~~ 1064 (1427)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 35788888874
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=366.05 Aligned_cols=208 Identities=23% Similarity=0.409 Sum_probs=170.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc---ccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~l 243 (1427)
.++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++.. .++.++||+|++.+|. .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 46999999999999999999999999999999999999986 999999999987653 5789999999987665 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
|++|||.++... . . +.++.+..+.+ ..++.++ .|++..||.+|+.+
T Consensus 554 TI~eNi~~~~~~--~---~------------------~~~i~~a~~~~---------~l~~~i~--~lp~gl~T~i~e~G 599 (694)
T TIGR03375 554 TLRDNIALGAPY--A---D------------------DEEILRAAELA---------GVTEFVR--RHPDGLDMQIGERG 599 (694)
T ss_pred hHHHHHhCCCCC--C---C------------------HHHHHHHHHHc---------ChHHHHH--hCcccccceecCCC
Confidence 999999875210 0 0 01111111111 0122222 35667899999876
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
. +||||||||++||||++.+|++++||||||+||+.++.+|.+.|+++.+ ++|+|++.|++ ++.+.||+|++|++
T Consensus 600 ~-~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~iivl~~ 674 (694)
T TIGR03375 600 R-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDRIIVMDN 674 (694)
T ss_pred C-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEEeC
Confidence 4 6999999999999999999999999999999999999999999998753 78988877765 56789999999999
Q ss_pred CeEEEecChHHHHH
Q 000555 404 GHLVYQGPRAEVLE 417 (1427)
Q Consensus 404 G~iv~~G~~~~~~~ 417 (1427)
|+++++|+++++.+
T Consensus 675 G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 675 GRIVADGPKDQVLE 688 (694)
T ss_pred CEEEeeCCHHHHHH
Confidence 99999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=321.97 Aligned_cols=218 Identities=25% Similarity=0.395 Sum_probs=173.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 588999987662 12468999999999999999999999999999999999865 3579999999876
Q ss_pred CcccccceEEEEccCCCCC--CCCCHHHHHHHHHhccCC-cCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 906 EQSTFARISGYVEQNDIHS--PQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
.....++.++|++|++.+. ...+++|++.+....... .........+.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997542 235788888653210000 01111223455788899999988877766 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||||++||+||+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999975 577889999777 5 6888887
Q ss_pred CCC
Q 000555 1063 KLG 1065 (1427)
Q Consensus 1063 ~~~ 1065 (1427)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 753
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=313.66 Aligned_cols=195 Identities=23% Similarity=0.385 Sum_probs=160.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCc-----ccccceEEEEccCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE-----FHVQRTSAYISQTDNHIP 241 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~~~~~~~yv~Q~~~~~~ 241 (1427)
.++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. ...++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 46999999999999999999999999999999999999875 9999999998742 123567999999998888
Q ss_pred CCCHHHHHHHHHH-hcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 242 ELTVRETFDFAAR-WQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 242 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
.+||+||+.++.. .++.. .. +....++.+++.+||++..+.
T Consensus 90 ~~t~~e~l~~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~~--- 131 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS-----------KA------------------------EAEERALELLEKVGLADKADA--- 131 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC-----------HH------------------------HHHHHHHHHHHHcCCHhHhhh---
Confidence 8999999988642 11100 00 001135667888898754443
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
.+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++. |...++.++||++++
T Consensus 132 --~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~s-h~~~~~~~~~d~i~~ 207 (213)
T cd03262 132 --YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVT-HEMGFAREVADRVIF 207 (213)
T ss_pred --CccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhCCEEEE
Confidence 4567999999999999999999999999999999999999999999999875 478988865 555678889999999
Q ss_pred EeCCeE
Q 000555 401 LSEGHL 406 (1427)
Q Consensus 401 L~~G~i 406 (1427)
|++|++
T Consensus 208 l~~g~i 213 (213)
T cd03262 208 MDDGRI 213 (213)
T ss_pred EeCCcC
Confidence 999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=350.46 Aligned_cols=211 Identities=21% Similarity=0.352 Sum_probs=179.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999988763 2468999999999999999999999999999999999865 3579999999875
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQS---T-FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
... . .++.+||++|++.+++.+||+|++.+.... ..+.++.++++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 124589999999999999999999875311 1233456889999999988777766 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. .+.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999975 46778999999986 677888
Q ss_pred cCCC
Q 000555 1062 GKLG 1065 (1427)
Q Consensus 1062 g~~~ 1065 (1427)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 8764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=316.58 Aligned_cols=220 Identities=24% Similarity=0.335 Sum_probs=174.5
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|||+++++||++||+|+||||||||+++|+|.....+..|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478999987652 2358999999999999999999999999999999999621113579999999875
Q ss_pred Ccc---cccc-eEEEEccCCCCCCCCCHHHHHHHHHhccCC----cCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000555 906 EQS---TFAR-ISGYVEQNDIHSPQVTVEESLWFSANLRLS----KEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGS 976 (1427)
Q Consensus 906 ~~~---~~~~-~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 976 (1427)
... ..++ .++|++|++.+++.+|+.+++.+....... ......+..+.++++++.+++. ...+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999998875432110 0111223345678889999996 34555442
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hceEEEEecC
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRG 1055 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~g 1055 (1427)
..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|+++. +... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-
Confidence 2599999999999999999999999999999999999999999999988779999999999753 4444 799999975
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 688888875
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=313.55 Aligned_cols=204 Identities=21% Similarity=0.343 Sum_probs=167.4
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478999987652 3468999999999999999999999999999999999754 3579999999865
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.++|++|++.+++ .|++||+.+....+.. . ...+.++++++.+++. ...+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 32 224567899999988887 4999999876443211 1 1124567899999995 4555554 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEEe-cCcE
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMK-RGGR 1057 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~-~gg~ 1057 (1427)
|||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .|.|||+++|++. .+ +.+|++++|+ ++|+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~ 216 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGE 216 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccch
Confidence 999999999999999999999999999999999999999999876 4899999999976 34 5699999995 4444
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=320.74 Aligned_cols=215 Identities=23% Similarity=0.252 Sum_probs=171.2
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 489999988663 2358999999999999999999999999999999999753 1 13589999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD----SLRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 973 (1427)
.+... ..+++.++|++|++.+++ .||+||+.+....+ ...+.....+.+.+.++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87632 234567999999988887 49999998865332 1111222334567777776542 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
+..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 358999999999999999999999999999999999999999999999865 799999999975 4677899999998
Q ss_pred cCcEEEEccCC
Q 000555 1054 RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~gg~~~~~g~~ 1064 (1427)
+ |+++..|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 6 677777764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=318.07 Aligned_cols=212 Identities=21% Similarity=0.272 Sum_probs=168.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLD--SSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|++|++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999986 3212489999999987431 235679999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++.+||+||+.++.+..+.. . .. + ....++++++.+|+.......
T Consensus 97 ~~~~tv~enl~~~~~~~~~~--~--------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~- 141 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRV--N--------RS----------E--------------ADEIVESSLKRVALWDEVKDR- 141 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCC--C--------HH----------H--------------HHHHHHHHHHHcCCchhhhHH-
Confidence 99999999998764322110 0 00 0 011356678888875311111
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-+..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|++.|+ ..++.++||+++
T Consensus 142 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~-~~~~~~~~d~i~ 218 (252)
T PRK14256 142 LKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHN-MQQAARVSDYTA 218 (252)
T ss_pred hhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECC-HHHHHhhCCEEE
Confidence 1234667999999999999999999999999999999999999999999999864 5788886554 567789999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|+++..|+.+++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 219 FFYMGDLVECGETKKIF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=317.48 Aligned_cols=209 Identities=22% Similarity=0.270 Sum_probs=167.8
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC-CceeEEEECCeecCcccc-cceEEEEccCCC--CCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSL-KKSGNITYNGYKLDEFHV-QRTSAYISQTDN--HIPEL 243 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~--~~~~l 243 (1427)
++|+|+|+++++||+++|+||||||||||+++|+|.++|.. +.+|+|.++|++++.... ++.++||+|++. +.+..
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 58999999999999999999999999999999999998721 148999999998754333 357999999874 44567
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
|+.+++.+.++..+.. . ....++++++.+||.+.. + .-+..
T Consensus 97 ~~~~~~~~~~~~~~~~-----------~--------------------------~~~~~~~~l~~~~l~~~~-~-~~~~~ 137 (254)
T PRK10418 97 TMHTHARETCLALGKP-----------A--------------------------DDATLTAALEAVGLENAA-R-VLKLY 137 (254)
T ss_pred cHHHHHHHHHHHcCCC-----------h--------------------------HHHHHHHHHHHcCCCChh-h-hhhcC
Confidence 9999987654322110 0 001356788888986410 1 12344
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++.|+ ..++.+.+|++++|++
T Consensus 138 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~-~~~~~~~~d~v~~l~~ 216 (254)
T PRK10418 138 PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD-MGVVARLADDVAVMSH 216 (254)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecC-HHHHHHhCCEEEEEEC
Confidence 567999999999999999999999999999999999999999999999876668899987554 5667789999999999
Q ss_pred CeEEEecChHHHH
Q 000555 404 GHLVYQGPRAEVL 416 (1427)
Q Consensus 404 G~iv~~G~~~~~~ 416 (1427)
|++++.|+.+++.
T Consensus 217 G~i~~~~~~~~~~ 229 (254)
T PRK10418 217 GRIVEQGDVETLF 229 (254)
T ss_pred CEEEEecCHHHHh
Confidence 9999999998874
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=318.50 Aligned_cols=210 Identities=19% Similarity=0.282 Sum_probs=167.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC---CCCCCceeEEEECCeecCcc-----cccceEEEEccCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKL---DSSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDN 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~---~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~ 238 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.. ++. +.+|+|.++|+++... ..++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 45999999999999999999999999999999999973 331 2489999999987532 23567999999987
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
+++ .||+||+.++.+..+... . + .....++++++.+||.+...+.
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~--~---------~-----------------------~~~~~~~~~l~~~~l~~~~~~~ 139 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKD--N---------A-----------------------FIRQRVEETLKGAALWDEVKDK 139 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCc--H---------H-----------------------HHHHHHHHHHHHcCCCcchhhh
Confidence 776 699999998754322100 0 0 0011356778888886432222
Q ss_pred cccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcE
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~v 398 (1427)
. +..++.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. + ++|||++.|+ ..++.++||++
T Consensus 140 ~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~-~~~~~~~~d~v 215 (250)
T PRK14245 140 L-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHN-MQQAARVSDKT 215 (250)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCC-HHHHHhhCCEE
Confidence 2 34566799999999999999999999999999999999999999999999984 3 6888886554 56778999999
Q ss_pred EEEeCCeEEEecChHHHH
Q 000555 399 LLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 399 ilL~~G~iv~~G~~~~~~ 416 (1427)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 216 AFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999999875
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=317.15 Aligned_cols=212 Identities=26% Similarity=0.311 Sum_probs=167.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEECCeecCccc----ccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKL--DSSLKKSGNITYNGYKLDEFH----VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~ 240 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.... .+..++|++|++..+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 454 899999999875432 123489999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcc-cccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDL-CSETVV 319 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~v 319 (1427)
+.+|++|++.+..+........ ... +. .+....++.+++.+||+. ..+
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~~----~~~-------------~~-----------~~~~~~~~~~l~~~~l~~~~~~--- 138 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARGE----EPL-------------DL-----------LDFLKLLKAKLALLGMDEEFLN--- 138 (243)
T ss_pred CCcCHHHHHHHHHHHhhccccc----ccc-------------cH-----------HHHHHHHHHHHHHcCCchhhcc---
Confidence 9999999998864322100000 000 00 000123677899999963 333
Q ss_pred ccccCC-CCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhh-cCc
Q 000555 320 GNDMIR-GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDL-FDD 397 (1427)
Q Consensus 320 g~~~~~-~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~-~D~ 397 (1427)
+.+. .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|||++.|+ ..++... ||+
T Consensus 139 --~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~-~~~~~~~~~d~ 214 (243)
T TIGR01978 139 --RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHY-QRLLNYIKPDY 214 (243)
T ss_pred --cccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEec-HHHHHhhcCCe
Confidence 3333 4999999999999999999999999999999999999999999999865 57899887655 4566677 899
Q ss_pred EEEEeCCeEEEecChHHHH
Q 000555 398 LLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 398 vilL~~G~iv~~G~~~~~~ 416 (1427)
+++|++|++++.|+++++.
T Consensus 215 i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 215 VHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEEeCCEEEEecCHHHhc
Confidence 9999999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=349.47 Aligned_cols=216 Identities=27% Similarity=0.356 Sum_probs=179.0
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 378899987663 2458999999999999999999999999999999999865 3579999999875
Q ss_pred Cc----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 906 EQ----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 906 ~~----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
.. ..+++.+||++|++.+++.+||+||+.+.............+..+.++++++.++|.+..+..+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 42 1235679999999999999999999988532111111223344567889999999987766665 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEc
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1061 (1427)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++...+|++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999976 56778999999986 566655
Q ss_pred cC
Q 000555 1062 GK 1063 (1427)
Q Consensus 1062 g~ 1063 (1427)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 54
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=323.98 Aligned_cols=209 Identities=28% Similarity=0.423 Sum_probs=173.0
Q ss_pred cceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCC
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~ 242 (1427)
.+++|+||||++.||+.+|++||||+||||+|++|....+-+ +|.|+++|++++.. ..|+.||.|||+..+|.
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN- 625 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN- 625 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeec-
Confidence 467999999999999999999999999999999999998865 99999999998654 46789999999887665
Q ss_pred CCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
.|+..||.|+. +. . .++++.+..||+. ..| ++++.++..+|.||++
T Consensus 626 dTI~yNIryak----~~-A------------------sneevyaAAkAA~--------IHd---rIl~fPegY~t~VGER 671 (790)
T KOG0056|consen 626 DTILYNIRYAK----PS-A------------------SNEEVYAAAKAAQ--------IHD---RILQFPEGYNTRVGER 671 (790)
T ss_pred ceeeeheeecC----CC-C------------------ChHHHHHHHHHhh--------HHH---HHhcCchhhhhhhhhc
Confidence 59999999862 10 0 1122222222221 112 4678999999999999
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
+.+ |||||||||+|||+++..|.|++|||.||+||..+.++|..+|.+++.. .+|||++ |. -.+.-.+|.|++++
T Consensus 672 GLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~-RTtIVvA-HR--LSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 672 GLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCAN-RTTIVVA-HR--LSTIVNADLILVIS 746 (790)
T ss_pred ccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-CceEEEe-ee--ehheecccEEEEEe
Confidence 997 9999999999999999999999999999999999999999999999863 4455554 43 35666899999999
Q ss_pred CCeEEEecChHHHHH
Q 000555 403 EGHLVYQGPRAEVLE 417 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~~ 417 (1427)
+|+|++.|.++|++.
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999999975
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=319.99 Aligned_cols=211 Identities=19% Similarity=0.303 Sum_probs=166.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLD--SSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|++|++||+++|+||||||||||+++|+|.++ |+.+.+|+|+++|+++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 359999999999999999999999999999999999986 3222489999999987421 235679999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++. ||+||+.|+.+..+... +.+ ...+++.+++.+|+.+.....
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~- 148 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKN----------KKK------------------------LQEIVEKSLKDVALWDEVKDR- 148 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCC----------HHH------------------------HHHHHHHHHHHcCCchhhhhh-
Confidence 775 99999988644322100 000 011245677777875321111
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-+...++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. + ++|+|++.|+ ..++.++||+++
T Consensus 149 l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~-~~~~~~~~d~i~ 225 (259)
T PRK14274 149 LHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHN-MQQAARVSDQTA 225 (259)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcC-HHHHHHhCCEEE
Confidence 134566899999999999999999999999999999999999999999999985 3 6888887555 567788999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|+++.+|+++++.
T Consensus 226 ~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 226 FFYMGELVECNDTNKMF 242 (259)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999999874
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=319.10 Aligned_cols=224 Identities=25% Similarity=0.356 Sum_probs=178.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.+.... . .+ ...++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~-~--~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG-L--SG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc-c--cc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 68889987663100 0 00 0013569999999999999999999999999999999999765 35899999998754
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000555 907 QS------TFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSS 977 (1427)
Q Consensus 907 ~~------~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 977 (1427)
.. ..++.++|++|++ .+.+..|+.|++.+..... ......+....++++++.+++. ...+..+ .
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 21 2456799999997 3667899999987653211 1123344455788999999996 4556554 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999975 46678999999985 6
Q ss_pred EEEEccCCC
Q 000555 1057 RVIYGGKLG 1065 (1427)
Q Consensus 1057 ~~~~~g~~~ 1065 (1427)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 888888754
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=305.69 Aligned_cols=196 Identities=27% Similarity=0.410 Sum_probs=171.2
Q ss_pred CeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc-------ccceEEEEccCCCCCCCCC
Q 000555 172 DVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-------VQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~~~~~lT 244 (1427)
++++..+.-.+|||-|+||||||||+|+|+|+.+|+ +|.|.+||..+.+.. -+|.+|||+|+..+||.+|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 577777775799999999999999999999999987 999999998764321 2688999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|+-||.|+...-. ....|++...||+++.. ++++
T Consensus 93 VrgNL~YG~~~~~-----------------------------------------~~~fd~iv~lLGI~hLL-----~R~P 126 (352)
T COG4148 93 VRGNLRYGMWKSM-----------------------------------------RAQFDQLVALLGIEHLL-----DRYP 126 (352)
T ss_pred Eecchhhhhcccc-----------------------------------------hHhHHHHHHHhCcHHHH-----hhCC
Confidence 9999999753210 11257789999998744 4567
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..|||||||||+|||||++.|++|+||||.+.||-....+|+-.|.++.++.+.-|+.+ +|-..|+.+++|+|++|++|
T Consensus 127 ~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYV-SHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV-SHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEE-ecCHHHHHhhhheEEEecCC
Confidence 78999999999999999999999999999999999999999999999998888888885 56678999999999999999
Q ss_pred eEEEecChHHHHH
Q 000555 405 HLVYQGPRAEVLE 417 (1427)
Q Consensus 405 ~iv~~G~~~~~~~ 417 (1427)
++...|+.+++..
T Consensus 206 kV~A~g~~e~v~~ 218 (352)
T COG4148 206 KVKASGPLEEVWG 218 (352)
T ss_pred eEEecCcHHHHhc
Confidence 9999999999864
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=318.27 Aligned_cols=211 Identities=24% Similarity=0.337 Sum_probs=166.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLD--SSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 359999999999999999999999999999999999853 4222489999999987421 235679999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++ .||+||+.++....+... . .. ....++.+++.+++.....+ .
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~--~------------------~~--------------~~~~~~~~l~~~~l~~~~~~-~ 141 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKD--K------------------QV--------------LDEAVEKSLKGASIWDEVKD-R 141 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCc--H------------------HH--------------HHHHHHHHHHHcCCchhHHH-H
Confidence 76 899999998754322100 0 00 01124556777777432111 1
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-++.++.|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|++.|+ .+++.+.||+++
T Consensus 142 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~-~~~~~~~~d~i~ 218 (252)
T PRK14239 142 LHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRS-MQQASRISDRTG 218 (252)
T ss_pred HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECC-HHHHHHhCCEEE
Confidence 2445668999999999999999999999999999999999999999999999854 5788886554 567889999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|++++.|+.+++.
T Consensus 219 ~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 219 FFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998874
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.25 Aligned_cols=210 Identities=27% Similarity=0.434 Sum_probs=161.3
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++. .++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehH
Confidence 357788765521 12468999999999999999999999999999999999865 35799999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCC
Q 000555 907 Q---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHE-----FVEEVMRLV--ELDSLRDALVGFPGS 976 (1427)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~vg~~~~ 976 (1427)
. ..+++.++|++|++.+++ .||+||+.+... ........+ ..++.++.+ ++....+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----G 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----C
Confidence 2 234567999999987765 699999976421 111111110 112233333 333333332 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. +|+|||+++|++. .+ ..+|++++|++ |
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-G 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-C
Confidence 5899999999999999999999999999999999999999999999986 4899999999986 34 56999999986 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
++++.|+.
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 78887764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=319.48 Aligned_cols=214 Identities=21% Similarity=0.272 Sum_probs=172.6
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 902 (1427)
.+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 20 ~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 589999988663 24689999999999999999999999999999999997431 12479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD----SLRDALVGF 973 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 973 (1427)
.+... ..+++.++|++|+..+++. ||.||+.+....+. .. ....+.+++.++.+++. +..+..
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 158 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK--- 158 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC---
Confidence 87532 2345679999999888875 99999987643321 11 12234466778887764 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
+..||||||||++|||||+.+|++|||||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 159 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 234 (274)
T PRK14265 159 --GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFN 234 (274)
T ss_pred --cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 357999999999999999999999999999999999999999999999865 799999999986 5778899999997
Q ss_pred --------cCcEEEEccCC
Q 000555 1054 --------RGGRVIYGGKL 1064 (1427)
Q Consensus 1054 --------~gg~~~~~g~~ 1064 (1427)
+.|++++.|+.
T Consensus 235 ~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 235 TEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccccccCceEEEeCCH
Confidence 24788888875
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=320.31 Aligned_cols=208 Identities=25% Similarity=0.405 Sum_probs=169.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999875 89999999886532 2345799999998888889
Q ss_pred CHHHHHHHHHH-hcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 244 TVRETFDFAAR-WQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 244 TV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
||.||+.++.. .... ..... ......++++++.+||++..++
T Consensus 92 tv~~~i~~~~~~~~~~-------~~~~~-------------------------~~~~~~~~~~l~~~~l~~~~~~----- 134 (255)
T PRK11231 92 TVRELVAYGRSPWLSL-------WGRLS-------------------------AEDNARVNQAMEQTRINHLADR----- 134 (255)
T ss_pred cHHHHHHhccchhhhh-------ccCCC-------------------------HHHHHHHHHHHHHcCCHHHHcC-----
Confidence 99999988521 0000 00000 0001235678888999754444
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++.|+ ..++.+++|++++|+
T Consensus 135 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~-~~~~~~~~d~i~~l~ 212 (255)
T PRK11231 135 RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHD-LNQASRYCDHLVVLA 212 (255)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHhcCEEEEEE
Confidence 4567999999999999999999999999999999999999999999999865 48898887554 567889999999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|+++..|+.+++.
T Consensus 213 ~G~i~~~~~~~~~~ 226 (255)
T PRK11231 213 NGHVMAQGTPEEVM 226 (255)
T ss_pred CCeEEEEcCHHHhc
Confidence 99999999988764
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=305.45 Aligned_cols=179 Identities=27% Similarity=0.351 Sum_probs=151.0
Q ss_pred cceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc-----ccccceEEEEccCCC-CC
Q 000555 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-----STFARISGYVEQNDI-HS 924 (1427)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~ 924 (1427)
++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3568999999999999999999999999999999999865 358999999987531 134567999999973 33
Q ss_pred CCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000555 925 PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDE 1004 (1427)
Q Consensus 925 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDE 1004 (1427)
...||+||+.+..... ..+.++..+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998865322 2233444556889999999988777765 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000555 1005 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1039 (1427)
Q Consensus 1005 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1039 (1427)
||+|||+.+...+.+.|+++.++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999974
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=318.29 Aligned_cols=210 Identities=22% Similarity=0.319 Sum_probs=165.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCc-----ccccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDE-----FHVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~-----~~~~~~~~yv~Q~~~~ 239 (1427)
.++|+|+|++|++||+++|+||||||||||+++|+|.+++. .+.+|+|.++|+++.. ...++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 35999999999999999999999999999999999997631 0248999999988642 1235679999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++ .||+||+.++....+.. . + .+..++.+++.+++....+. .
T Consensus 106 ~~-~tv~enl~~~~~~~~~~-------~---------------~--------------~~~~~~~~l~~~~l~~~l~~-~ 147 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYT-------G---------------D--------------MDELVERSLRKAAVWDECKD-K 147 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCc-------H---------------H--------------HHHHHHHHHHHhCCcchhhh-h
Confidence 77 49999999875432210 0 0 00123456677766421111 2
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-+..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.| ...++.++||+++
T Consensus 148 ~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH-~~~~~~~~~d~i~ 224 (269)
T PRK14259 148 LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTH-NMQQAVRVSDMTA 224 (269)
T ss_pred hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeC-CHHHHHHhcCEEE
Confidence 2445668999999999999999999999999999999999999999999999843 688888655 4568889999999
Q ss_pred EEeC-----------CeEEEecChHHHHH
Q 000555 400 LLSE-----------GHLVYQGPRAEVLE 417 (1427)
Q Consensus 400 lL~~-----------G~iv~~G~~~~~~~ 417 (1427)
+|++ |++++.|+++++.+
T Consensus 225 ~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 225 FFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEeccccccccccccceEEEeCCHHHHHh
Confidence 9996 67899999998853
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=297.33 Aligned_cols=209 Identities=23% Similarity=0.373 Sum_probs=182.8
Q ss_pred ccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCC
Q 000555 165 HSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 244 (1427)
.++++++|+||.++||+|++++|||||||||.+++|+|++.|+ +|+|+++|.+++.. .+.+|||.|.+.-+++.+|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMT 88 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhh-hhhhcccChhhhccCccCc
Confidence 4578999999999999999999999999999999999999986 99999999987543 4567999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
|.|.|.|-++++|.+. . +.....+..|+.+++.... .+.+
T Consensus 89 v~dql~yla~LkGm~~--~---------------------------------e~~~~~~~wLer~~i~~~~-----~~kI 128 (300)
T COG4152 89 VEDQLKYLAELKGMPK--A---------------------------------EIQKKLQAWLERLEIVGKK-----TKKI 128 (300)
T ss_pred HHHHHHHHHHhcCCcH--H---------------------------------HHHHHHHHHHHhccccccc-----cchH
Confidence 9999999999988621 0 1122366788888886432 3456
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..||.|.+|++.+-.+++++|++++||||+|||||-+++.+-+.+.++. ..|.|||.|. |.+..+.++||++++|++|
T Consensus 129 k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk-~~GatIifSs-H~Me~vEeLCD~llmL~kG 206 (300)
T COG4152 129 KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK-EEGATIIFSS-HRMEHVEELCDRLLMLKKG 206 (300)
T ss_pred HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH-hcCCEEEEec-chHHHHHHHhhhhheecCC
Confidence 7899999999999999999999999999999999999999999999985 4699999985 5688999999999999999
Q ss_pred eEEEecChHHHHHHH
Q 000555 405 HLVYQGPRAEVLEFF 419 (1427)
Q Consensus 405 ~iv~~G~~~~~~~~f 419 (1427)
+.|.+|+.+++...|
T Consensus 207 ~~V~~G~v~~ir~~~ 221 (300)
T COG4152 207 QTVLYGTVEDIRRSF 221 (300)
T ss_pred ceEEeccHHHHHHhc
Confidence 999999999998743
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=318.49 Aligned_cols=212 Identities=23% Similarity=0.319 Sum_probs=168.3
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEECCeecCc-----ccccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSL--KKSGNITYNGYKLDE-----FHVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~-----~~~~~~~~yv~Q~~~~ 239 (1427)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|.. +.+|+|.++|+++.. ...++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 359999999999999999999999999999999999986421 248999999988742 1235679999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++.+||+||+.++....+.. ... + ....++.+++.+||...... .
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~----------~~~----------~--------------~~~~~~~~l~~~~l~~~~~~-~ 141 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVR----------NKK----------D--------------LDELVEKSLRGANLWNEVKD-R 141 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------CHH----------H--------------HHHHHHHHHHHcCCchhhhh-H
Confidence 99999999998875432110 000 0 01135667888887421111 1
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-+..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.| ...++.++||+|+
T Consensus 142 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH-~~~~~~~~~d~i~ 218 (258)
T PRK14241 142 LDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTH-NMQQAARVSDQTA 218 (258)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEec-CHHHHHHhCCEEE
Confidence 1345667999999999999999999999999999999999999999999999853 578888655 4567889999999
Q ss_pred EEe------CCeEEEecChHHHH
Q 000555 400 LLS------EGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~------~G~iv~~G~~~~~~ 416 (1427)
+|+ +|++++.|+++++.
T Consensus 219 ~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 219 FFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEecccCCCCceEEecCCHHHHH
Confidence 997 79999999998874
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=308.50 Aligned_cols=197 Identities=27% Similarity=0.361 Sum_probs=164.6
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|++..++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67888886552 2458999999999999999999999999999999999765 35799999998753
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000555 907 QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKR 986 (1427)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqr 986 (1427)
...+++.++|++|++.+++.+||+||+.+...... .. .+.++++++.++|.+..+..+ ..||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22256678999999888899999999987654321 11 234788999999987666655 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 987 l~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++ .. |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEeec
Confidence 99999999999999999999999999999999999998778999999999975 33 33 8887774
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=317.09 Aligned_cols=210 Identities=21% Similarity=0.334 Sum_probs=165.8
Q ss_pred eeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEECCeecCcc-----cccceEEEEccCCCCC
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDS--SLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNHI 240 (1427)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1427)
++|+|+|+++++||+++|+||||||||||+++|+|..++ ..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 599999999999999999999999999999999998753 212489999999987531 2356799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+ +||+||+.++....+... . .+ ....++++++.+++.+.... .-
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~--~------------------~~--------------~~~~~~~~l~~~~l~~~l~~-~~ 140 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKD--K------------------KK--------------LDEIVEKSLKGAALWDEVKD-RL 140 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCC--H------------------HH--------------HHHHHHHHHHHcCCchhhHH-HH
Confidence 7 899999998754332100 0 00 01124556677776421111 11
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
++.+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. + ++|+|++.|+ ..++.+.+|++++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~-~~~~~~~~d~v~~ 217 (250)
T PRK14240 141 KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHN-MQQASRISDKTAF 217 (250)
T ss_pred hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeC-HHHHHhhCCEEEE
Confidence 34566899999999999999999999999999999999999999999999984 3 6898887554 5678889999999
Q ss_pred EeCCeEEEecChHHHH
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~iv~~G~~~~~~ 416 (1427)
|++|+++..|+.+++.
T Consensus 218 l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 218 FLNGEIVEFGDTVDLF 233 (250)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=318.49 Aligned_cols=208 Identities=28% Similarity=0.417 Sum_probs=169.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 36999999999999999999999999999999999999875 89999999987543 2345699999998778889
Q ss_pred CHHHHHHHHHH-hcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccc
Q 000555 244 TVRETFDFAAR-WQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 244 TV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 322 (1427)
||+||+.++.. .... .. .+.. ....+++++++.+||.+..+ +
T Consensus 91 tv~e~l~~~~~~~~~~-------~~-----------~~~~--------------~~~~~~~~~l~~~~l~~~~~-----~ 133 (256)
T TIGR03873 91 TVRDVVALGRIPHRSL-------WA-----------GDSP--------------HDAAVVDRALARTELSHLAD-----R 133 (256)
T ss_pred CHHHHHHhcchhhhhh-------cc-----------CCCH--------------HHHHHHHHHHHHcCcHhhhc-----C
Confidence 99999988521 0000 00 0000 00123567888899865433 4
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEe
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~ 402 (1427)
.+..|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++.|+ ..++.++||+|++|+
T Consensus 134 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~-~~~~~~~~d~i~~l~ 211 (256)
T TIGR03873 134 DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHD-LNLAASYCDHVVVLD 211 (256)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhCCEEEEEe
Confidence 4567999999999999999999999999999999999999999999999864 47898887554 567789999999999
Q ss_pred CCeEEEecChHHHH
Q 000555 403 EGHLVYQGPRAEVL 416 (1427)
Q Consensus 403 ~G~iv~~G~~~~~~ 416 (1427)
+|+++..|+.+++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 212 GGRVVAAGPPREVL 225 (256)
T ss_pred CCCEEEecCHHHhh
Confidence 99999999988764
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=310.07 Aligned_cols=192 Identities=27% Similarity=0.410 Sum_probs=159.7
Q ss_pred CeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-------cccceEEEEccCCCCCCCCC
Q 000555 172 DVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-------HVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~~~~~~lT 244 (1427)
|+|+++++ |+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999875 99999999886421 13467999999998888999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
++||+.+....... .. ...++++.++.+||++..+ ..+
T Consensus 92 ~~~~l~~~~~~~~~------------~~-------------------------~~~~~~~~l~~~~l~~~~~-----~~~ 129 (214)
T cd03297 92 VRENLAFGLKRKRN------------RE-------------------------DRISVDELLDLLGLDHLLN-----RYP 129 (214)
T ss_pred HHHHHHHHHhhCCH------------HH-------------------------HHHHHHHHHHHcCCHhHhh-----cCc
Confidence 99999876421100 00 0112566888899875433 345
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++++++.++|+|++.| ...++.+++|++++|++|
T Consensus 130 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH-~~~~~~~~~d~i~~l~~G 208 (214)
T cd03297 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTH-DLSEAEYLADRIVVMEDG 208 (214)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEec-CHHHHHHhcCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999987655889888654 456778899999999999
Q ss_pred eEEEec
Q 000555 405 HLVYQG 410 (1427)
Q Consensus 405 ~iv~~G 410 (1427)
+++.+|
T Consensus 209 ~i~~~g 214 (214)
T cd03297 209 RLQYIG 214 (214)
T ss_pred EEEecC
Confidence 998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=382.64 Aligned_cols=219 Identities=23% Similarity=0.353 Sum_probs=173.9
Q ss_pred CCccccceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---------------------------------
Q 000555 161 KPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--------------------------------- 207 (1427)
Q Consensus 161 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--------------------------------- 207 (1427)
++.+++.+||+|+|++|+||+.+||+||||||||||+++|+|+++|.
T Consensus 1175 Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 (1466)
T PTZ00265 1175 YISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKN 1254 (1466)
T ss_pred CCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccc
Confidence 44333457999999999999999999999999999999999999972
Q ss_pred ------------------CCceeEEEECCeecCccc---ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCcchhhHh
Q 000555 208 ------------------LKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYI 266 (1427)
Q Consensus 208 ------------------~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 266 (1427)
.+.+|+|++||+++++.. +++.+|||+|++.+| +.|++|||.|+.. . .
T Consensus 1255 ~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~--~---a----- 1323 (1466)
T PTZ00265 1255 VNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE--D---A----- 1323 (1466)
T ss_pred ccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC--C---C-----
Confidence 014899999999987653 578999999998766 5799999999621 0 0
Q ss_pred hhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccCCCCChHHhHHHHHHHHHhCCCc
Q 000555 267 NDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRK 346 (1427)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~ 346 (1427)
.+.++++..+.+. .++.+ ..|++..||.||+.+. .||||||||++|||||+++|+
T Consensus 1324 -------------t~eeI~~A~k~A~---------l~~fI--~~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ 1378 (1466)
T PTZ00265 1324 -------------TREDVKRACKFAA---------IDEFI--ESLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPK 1378 (1466)
T ss_pred -------------CHHHHHHHHHHcC---------CHHHH--HhCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCC
Confidence 0111111111110 11122 2478889999998765 599999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC----CeEE-EecChHHHHH
Q 000555 347 TLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE----GHLV-YQGPRAEVLE 417 (1427)
Q Consensus 347 illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~----G~iv-~~G~~~~~~~ 417 (1427)
||+||||||+||+.++..|.+.|+++....++|+|++.|++ ++.+.||+|++|++ |+++ ++|+++++++
T Consensus 1379 ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1379 ILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999987533478988876654 67789999999999 9955 8999999863
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=314.77 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=173.1
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--ce--eEEEEEECC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--GY--IEGDIKISG 902 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~~--~~G~i~i~g 902 (1427)
+.++|+++++. ++.+|+|+||++++||+++|+|+||||||||+++|+|...+ |. +.|++.++|
T Consensus 11 i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 11 FNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFG 77 (257)
T ss_pred eeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECC
Confidence 78899887652 35689999999999999999999999999999999997542 21 236676766
Q ss_pred ccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccCCC
Q 000555 903 YPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGFPG 975 (1427)
Q Consensus 903 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~ 975 (1427)
.+... ..+++.++|++|++.+++.+|++||+.+..... .....++..+.++++++.+++.+ ..+..
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 150 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRLNSP----- 150 (257)
T ss_pred cccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhhcCC-----
Confidence 65432 234667999999999999999999998874322 11123344566889999999864 23333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
+..||+|||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ ++|||+++|++. .+.+.+|++++|++
T Consensus 151 ~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~- 227 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN- 227 (257)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999864 699999999975 46678999999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|++...|+.
T Consensus 228 g~i~~~g~~ 236 (257)
T PRK14246 228 GELVEWGSS 236 (257)
T ss_pred CEEEEECCH
Confidence 677777764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=317.65 Aligned_cols=214 Identities=22% Similarity=0.289 Sum_probs=171.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--c-eeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 902 (1427)
.++++|+++.++ ++++|+|+|++|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478999987663 23589999999999999999999999999999999996431 1 2579999999
Q ss_pred ccCC-----cccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000555 903 YPKE-----QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS----LRDALVGF 973 (1427)
Q Consensus 903 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 973 (1427)
.+.. ...+++.++|++|++.+++ .|++||+.+....+. .. .+..+.++++++.+++.+ ..+..
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 148 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQS--- 148 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCC---
Confidence 8753 1234567999999988887 499999988653321 11 123345667778777743 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
+..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 149 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~ 224 (264)
T PRK14243 149 --GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFN 224 (264)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 357999999999999999999999999999999999999999999999875 589999999986 5788899999997
Q ss_pred c--------CcEEEEccCC
Q 000555 1054 R--------GGRVIYGGKL 1064 (1427)
Q Consensus 1054 ~--------gg~~~~~g~~ 1064 (1427)
+ .|+++..|+.
T Consensus 225 ~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 225 VELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccccccCceEEEeCCH
Confidence 2 4688888764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=315.58 Aligned_cols=215 Identities=27% Similarity=0.311 Sum_probs=171.7
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc-
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP- 904 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 904 (1427)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 378899987653 2358999999999999999999999999999999999865 357999999876
Q ss_pred ----CCcc-------cccceEEEEccCCC--CCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 000555 905 ----KEQS-------TFARISGYVEQNDI--HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-SLRDAL 970 (1427)
Q Consensus 905 ----~~~~-------~~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ 970 (1427)
.... ..++.++|++|++. +.+..|+.||+.+..... .. ....+..+.++++++.+++. ...+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3221 12346899999974 456789999987542211 10 11123346678999999996 355555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceE
Q 000555 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1049 (1427)
Q Consensus 971 vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v 1049 (1427)
+ +.||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 146 ~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 P-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4 579999999999999999999999999999999999999999999998754 899999999975 466689999
Q ss_pred EEEecCcEEEEccCC
Q 000555 1050 LLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1050 ~~l~~gg~~~~~g~~ 1064 (1427)
++|++ |+++..|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99986 678887764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=317.60 Aligned_cols=207 Identities=23% Similarity=0.323 Sum_probs=166.8
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCee-----cCccc-------ccceEEEEc
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYK-----LDEFH-------VQRTSAYIS 234 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~-------~~~~~~yv~ 234 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +.... .++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 35999999999999999999999999999999999999875 8999999987 54321 134699999
Q ss_pred cCCC--CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCc
Q 000555 235 QTDN--HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD 312 (1427)
Q Consensus 235 Q~~~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~ 312 (1427)
|++. +++.+|+.||+.+........ . . ++ ....++++++.+|+.
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~-~---------~----------~~--------------~~~~~~~~l~~~~l~ 141 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGAR-H---------Y----------GD--------------IRATAGDWLERVEID 141 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccC-c---------H----------HH--------------HHHHHHHHHHHcCCC
Confidence 9863 567789999997643211100 0 0 00 011356788889986
Q ss_pred c-ccccccccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhH
Q 000555 313 L-CSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPET 391 (1427)
Q Consensus 313 ~-~~~t~vg~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~ 391 (1427)
. ..+ +.+..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.++.+.|+|++. |...++
T Consensus 142 ~~~~~-----~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~is-H~~~~~ 215 (258)
T PRK11701 142 AARID-----DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT-HDLAVA 215 (258)
T ss_pred hhHHh-----CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-CCHHHH
Confidence 3 222 345679999999999999999999999999999999999999999999998765688998865 455677
Q ss_pred HhhcCcEEEEeCCeEEEecChHHHH
Q 000555 392 FDLFDDLLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 392 ~~~~D~vilL~~G~iv~~G~~~~~~ 416 (1427)
.+.+|+|++|++|++++.|+++++.
T Consensus 216 ~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 216 RLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 7899999999999999999998764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=284.26 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=173.3
Q ss_pred ccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc----------------ccccce
Q 000555 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ----------------STFARI 913 (1427)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~ 913 (1427)
+...+||+||+..+.|+++.|+|.|||||||+|+||.-..+ +..|.|.+||..+.. ..+|.+
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 45679999999999999999999999999999999986554 357999999875321 123446
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000555 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVEL 993 (1427)
Q Consensus 914 ~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL 993 (1427)
.|+|+|+..+++++||.||+.-+---- -..++.+..++.+..++.+|+.+.+|... ..|||||+||++|||||
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARaL 167 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARAL 167 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHHH
Confidence 799999999999999999986432111 13456677788899999999999888664 47999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 994 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 994 ~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||.... ..+...+|+.|.+ |.+...||+
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P 236 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPP 236 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCCh
Confidence 99999999999999999999999999999999999999999998763 4556789999986 799999987
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=314.10 Aligned_cols=219 Identities=23% Similarity=0.314 Sum_probs=170.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 57888887653 24589999999999999999999999999999999997321135799999998754
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHH-hccCC---cCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000555 907 QS---T-FARISGYVEQNDIHSPQVTVEESLWFSA-NLRLS---KEVSKNQRHEFVEEVMRLVELD-SLRDALVGFPGSS 977 (1427)
Q Consensus 907 ~~---~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~-~l~~~---~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 977 (1427)
.. . .++.++|++|++.+++.+|+.+++.+.. .++.. .........+.+++.++.+++. +..+..+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 21 1 2346899999998888888777665332 11110 0011223345678889999985 34444431 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hceEEEEecCc
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRGG 1056 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~gg 1056 (1427)
.||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++++.|+|||+++|++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999998877899999999975 34444 799999975 6
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 78888875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=308.62 Aligned_cols=196 Identities=27% Similarity=0.413 Sum_probs=162.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCccc------ccceEEEEccCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999875 999999999875322 346799999999888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccc
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 320 (1427)
+.+|+.||+.++...... .... +....++++++.+||.+..+.
T Consensus 95 ~~~t~~~n~~~~~~~~~~----------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~--- 137 (220)
T TIGR02982 95 GFLTARQNVQMALELQPN----------LSYQ------------------------EARERARAMLEAVGLGDHLDY--- 137 (220)
T ss_pred CCCCHHHHHHHHHHhccC----------CCHH------------------------HHHHHHHHHHHHcCChhhhhc---
Confidence 889999999986532210 0000 001235678899999754443
Q ss_pred cccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEE
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vil 400 (1427)
.++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|++ +..+.||+|++
T Consensus 138 --~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~--~~~~~~d~v~~ 213 (220)
T TIGR02982 138 --YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN--RILDVADRIVH 213 (220)
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH--HHHhhCCEEEE
Confidence 44579999999999999999999999999999999999999999999998765689999987765 35689999999
Q ss_pred EeCCeE
Q 000555 401 LSEGHL 406 (1427)
Q Consensus 401 L~~G~i 406 (1427)
|++|++
T Consensus 214 l~~g~~ 219 (220)
T TIGR02982 214 MEDGKL 219 (220)
T ss_pred EECCEE
Confidence 999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=364.36 Aligned_cols=208 Identities=27% Similarity=0.399 Sum_probs=168.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||+++++. .+++.++||+|++.+|+ .
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-G 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-H
Confidence 46999999999999999999999999999999999999986 99999999998654 35788999999987665 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 323 (1427)
||+|||.++.+.. . +++++.+..+.+ ..++.++ .++...||.+|+.+
T Consensus 563 TI~eNi~l~~~~~-~---------------------~~~~i~~a~~~a---------~l~~~i~--~lp~gldt~i~e~G 609 (708)
T TIGR01193 563 SILENLLLGAKEN-V---------------------SQDEIWAACEIA---------EIKDDIE--NMPLGYQTELSEEG 609 (708)
T ss_pred HHHHHHhccCCCC-C---------------------CHHHHHHHHHHh---------CCHHHHH--hcccccCcEecCCC
Confidence 9999998852100 0 001111111111 0112222 35667899999866
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeC
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~ 403 (1427)
.+||||||||++||||++.+|+||+||||||+||+.++..+.+.|+++ .++|+|++.|++ ++.+.||+|++|++
T Consensus 610 -~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i~~l~~ 683 (708)
T TIGR01193 610 -SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999874 268988876665 56789999999999
Q ss_pred CeEEEecChHHHHH
Q 000555 404 GHLVYQGPRAEVLE 417 (1427)
Q Consensus 404 G~iv~~G~~~~~~~ 417 (1427)
|++++.|+++++.+
T Consensus 684 G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 684 GKIIEQGSHDELLD 697 (708)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=347.15 Aligned_cols=206 Identities=25% Similarity=0.337 Sum_probs=172.7
Q ss_pred ceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCcc----cccceEEEEccCCCCCCCC
Q 000555 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS----TFARISGYVEQNDIHSPQV 927 (1427)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~l 927 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.... ..++.++|++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 468999999999999999999999999999999999765 3579999999876421 2346799999999889999
Q ss_pred CHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000555 928 TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1427)
Q Consensus 928 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTs 1007 (1427)
||+||+.+..........+.++..+.++++++.+++.+..+..+ ..|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532110101123334567889999999987777765 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCCCC
Q 000555 1008 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGV 1066 (1427)
Q Consensus 1008 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~~~ 1066 (1427)
|||+.+...+.+.|++++++|+|||+++|++. ++...||++++|++ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999878999999999975 56778999999986 68888887643
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=314.69 Aligned_cols=212 Identities=20% Similarity=0.301 Sum_probs=167.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLD--SSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|..+ |..+.+|+|+++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 2212489999999886432 235679999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++. ||+||+.++...++.... .. + ....++.+++.+||.+...+..
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~ 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKN---------KK----------K--------------LDEIVEKSLTSVGLWEELGDRL 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCC---------HH----------H--------------HHHHHHHHHHHcCCCchhhhHh
Confidence 775 999999886433211000 00 0 0112566788888864222222
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
+..++.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. + ++|+|++.|+ ..++.++||+++
T Consensus 144 -~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~-~~~~~~~~d~i~ 219 (251)
T PRK14244 144 -KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHS-MKQAKKVSDRVA 219 (251)
T ss_pred -hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCC-HHHHHhhcCEEE
Confidence 33456799999999999999999999999999999999999999999999984 3 7899987655 457788999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|++++.|+++++.
T Consensus 220 ~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 220 FFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=324.45 Aligned_cols=224 Identities=28% Similarity=0.424 Sum_probs=185.7
Q ss_pred cCcccCCCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeE
Q 000555 816 KGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 895 (1427)
Q Consensus 816 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~ 895 (1427)
..+.+|.....+..+++++.. +..++++|+||||.+.|||.+||+||||||||||.++|.|.-. +..
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~P-----------Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~ 390 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAAP-----------PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTS 390 (580)
T ss_pred CCCCCCCCCceeeEeeeeecC-----------CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCC
Confidence 346677777789999998732 2246789999999999999999999999999999999999755 357
Q ss_pred EEEEECCccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHH-----HHHHHHHHHHHcCCcccc
Q 000555 896 GDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ-----RHEFVEEVMRLVELDSLR 967 (1427)
Q Consensus 896 G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~l~L~~~~ 967 (1427)
|.|.+||.+.++ +.+-+++||.||+-.+|+. ||.||+. |...+.+++. +.+.+.|++ +.+.+-.
T Consensus 391 G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelI--l~lP~GY 462 (580)
T COG4618 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELI--LRLPQGY 462 (580)
T ss_pred CcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH-----hccccCCHHHHHHHHHHcChHHHH--HhCcCCc
Confidence 999999998754 5577899999999888875 9999995 2222333322 122233332 4667778
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Q 000555 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047 (1427)
Q Consensus 968 ~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1047 (1427)
||.+|.. +.+||||||||+++||||-.+|.+++||||-|+||...+..+.+.|....++|+|+|+++|+|+ +...+|
T Consensus 463 dT~iG~~-G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~D 539 (580)
T COG4618 463 DTRIGEG-GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVD 539 (580)
T ss_pred cCccCCC-CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcc
Confidence 9999964 4689999999999999999999999999999999999999999999999999999999999986 678899
Q ss_pred eEEEEecCcEEEEccCC
Q 000555 1048 ELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1048 ~v~~l~~gg~~~~~g~~ 1064 (1427)
+|++|++ |++..+||.
T Consensus 540 kilvl~~-G~~~~FG~r 555 (580)
T COG4618 540 KILVLQD-GRIAAFGPR 555 (580)
T ss_pred eeeeecC-ChHHhcCCH
Confidence 9999975 789999986
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=316.12 Aligned_cols=212 Identities=21% Similarity=0.329 Sum_probs=168.1
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 35999999999999999999999999999999999998741 12489999999887531 235679999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++ .||+||+.++....+.. . . .. .+..+++.++.+|+....+. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~--~--------~----------~~--------------~~~~~~~~l~~~~l~~~~~~-~ 139 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVK--S--------K----------HK--------------LDRIVEESLKKAALWDEVKS-E 139 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCC--c--------H----------HH--------------HHHHHHHHHHHcCCCchhHH-H
Confidence 77 89999999865432110 0 0 00 01124556777777532111 2
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
.++.+.+||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|++.|+ ..++.+++|+++
T Consensus 140 ~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~-~~~~~~~~d~i~ 216 (250)
T PRK14262 140 LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHN-IGQAIRIADYIA 216 (250)
T ss_pred HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCC-HHHHHHhCCEEE
Confidence 3455678999999999999999999999999999999999999999999999853 6888887555 456788999999
Q ss_pred EEeCCeEEEecChHHHHH
Q 000555 400 LLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~~ 417 (1427)
+|++|+++..|+.+++.+
T Consensus 217 ~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 217 FMYRGELIEYGPTREIVE 234 (250)
T ss_pred EEECCEEEEecCHHHHHh
Confidence 999999999999988753
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=314.59 Aligned_cols=219 Identities=25% Similarity=0.328 Sum_probs=173.9
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-ceeEEEEEECC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 902 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 902 (1427)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 478899987652 2458999999999999999999999999999999999643 1 12579999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000555 903 YPKEQ-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977 (1427)
Q Consensus 903 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 977 (1427)
.++.. ...++.++|++|++.+++. |++||+.+..... ...+.+...+.+.+.++.+++.+....... ....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87542 1345679999999988875 9999998764322 111223345667888999888542211111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
.||+|||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999864 899999999986 57788999999986 68
Q ss_pred EEEccCC
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~g~~ 1064 (1427)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 8888764
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=315.10 Aligned_cols=197 Identities=25% Similarity=0.375 Sum_probs=167.3
Q ss_pred eccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc---ccccceEEEEccCCCCCCCCCHH
Q 000555 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTVE 930 (1427)
Q Consensus 854 iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 930 (1427)
+|+|+||++++||+++|+|+||||||||+++|+|... .+|+|.++|.+... ..+++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6999999999999999999999999999999999764 27999999987643 22345689999998888899999
Q ss_pred HHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 000555 931 ESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1003 (1427)
Q Consensus 931 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~-------~p~illlD 1003 (1427)
||+.+.... ..+.++..+.++++++.++|.+..+..+ ..||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122333556889999999987777665 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEccCC
Q 000555 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g~~ 1064 (1427)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877899999999975 47788999999986 678887764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=323.76 Aligned_cols=218 Identities=27% Similarity=0.383 Sum_probs=179.1
Q ss_pred CCCceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEEC
Q 000555 822 FQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS 901 (1427)
Q Consensus 822 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~ 901 (1427)
.....++|+||++.++ .++++|+||||++.||+.+||+|||||||||+|++|.+.-+ ..+|.|.||
T Consensus 533 ~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~iD 598 (790)
T KOG0056|consen 533 VTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITID 598 (790)
T ss_pred ccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEEc
Confidence 4456899999999885 35789999999999999999999999999999999998654 347999999
Q ss_pred CccCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHH--HHH-HHHcCCcccccccccCCC
Q 000555 902 GYPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFV--EEV-MRLVELDSLRDALVGFPG 975 (1427)
Q Consensus 902 g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v--~~~-l~~l~L~~~~~~~vg~~~ 975 (1427)
|++++. ..+|+.+|.||||..+|. .|+..|+.|+.. +.++++..+.+ ..+ -+.++..+..++.||..|
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak~-----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERG 672 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAKP-----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERG 672 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecCC-----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcc
Confidence 998754 567889999999988875 588888887631 22333332211 111 123567777889999766
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 976 ~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
- .|||||||||+|||+++++|.|++|||+||+||..+++.|+..|.+++. ++|-|+++|+.|. .-.+|.|+++++
T Consensus 673 L-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~- 747 (790)
T KOG0056|consen 673 L-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISN- 747 (790)
T ss_pred c-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeC-
Confidence 5 4999999999999999999999999999999999999999999999875 7999999999874 446799999986
Q ss_pred cEEEEccCC
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~g~~ 1064 (1427)
|++++.|..
T Consensus 748 G~IvErG~H 756 (790)
T KOG0056|consen 748 GRIVERGRH 756 (790)
T ss_pred CeEeecCcH
Confidence 688888864
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=302.19 Aligned_cols=171 Identities=45% Similarity=0.730 Sum_probs=152.2
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEECCeecCcccccceEEEEccCCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKL--DSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 244 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999998 765 8999999998765445678999999988888999
Q ss_pred HHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccccccccC
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 324 (1427)
++||+.++.++
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------- 109 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------- 109 (194)
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 99999764210
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEEeCC
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 ~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL~~G 404 (1427)
..||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ .++|+|++.|++..++.+.||++++|++|
T Consensus 110 ~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCC
Confidence 04999999999999999999999999999999999999999999999865 48999998777655788899999999999
Q ss_pred eEEEec
Q 000555 405 HLVYQG 410 (1427)
Q Consensus 405 ~iv~~G 410 (1427)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=304.62 Aligned_cols=194 Identities=24% Similarity=0.323 Sum_probs=160.9
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 5677776542 3468999999999999999999999999999999999765 357999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000555 908 --STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 908 --~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 985 (1427)
..+++.++|++|++.+++.+|+.||+.+....+. .+ .+.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-----GA--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC-----Cc--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2245678999999888889999999987654321 11 235788999999988777765 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEE
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1051 (1427)
Q Consensus 986 rl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1051 (1427)
|++||++++.+|++++|||||+|||+.+...+++.|++++++|.|||+++|++. ++ .+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-cc--cceEEee
Confidence 999999999999999999999999999999999999998777999999999975 22 3466553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=315.59 Aligned_cols=211 Identities=21% Similarity=0.295 Sum_probs=167.7
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+|. .+.+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35999999999999999999999999999999999998641 12489999999987532 235679999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++ +|++||+.|+....+.. .. .+ ...+++.+++.+||...... .
T Consensus 97 ~~-~tv~enl~~~~~~~~~~--~~--------~~------------------------~~~~~~~~l~~~~l~~~~~~-~ 140 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIK--DK--------KE------------------------LDKIVEWALKKAALWDEVKD-D 140 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCC--cH--------HH------------------------HHHHHHHHHHHcCCchhhhh-H
Confidence 77 89999999875432210 00 00 01124567788887421111 1
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-+..++.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|+ ..++.++||+++
T Consensus 141 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~-~~~~~~~~d~v~ 217 (251)
T PRK14270 141 LKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHN-MQQASRVSDYTA 217 (251)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcC-HHHHHHhcCEEE
Confidence 2345668999999999999999999999999999999999999999999999864 5788887655 567788999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|++++.|+.+++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 218 FFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEECCeEEEeCCHHHHh
Confidence 99999999999998874
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=311.13 Aligned_cols=208 Identities=26% Similarity=0.439 Sum_probs=165.9
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.+. ...+.+|+|+|+++++|++++|+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-----------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcC-----------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 67888876542 112458999999999999999999999999999999999865 35799999998653
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000555 907 Q---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG------FPGSS 977 (1427)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~ 977 (1427)
. ...++.++|++|++.+++ .||.|++.+... ... .+.+.++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567999999988776 699999876421 111 2235677888888776655321 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ +|||+++|++. ..+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEeC-Ce
Confidence 89999999999999999999999999999999999999999999998764 89999999976 3478999999986 56
Q ss_pred EEEc
Q 000555 1058 VIYG 1061 (1427)
Q Consensus 1058 ~~~~ 1061 (1427)
+++.
T Consensus 216 i~~~ 219 (220)
T cd03245 216 IVAD 219 (220)
T ss_pred Eeec
Confidence 6554
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=303.58 Aligned_cols=200 Identities=21% Similarity=0.303 Sum_probs=153.1
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCcc
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
-.+-.+||+|.++ +.++++++++|-|.-...+||+||||.||||||++|.|..++ ..|+..-|
T Consensus 585 PvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn--- 647 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN--- 647 (807)
T ss_pred CeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc---
Confidence 3577888887653 356789999999999999999999999999999999998764 34544322
Q ss_pred CCcccccceEEEEccCC--CCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000555 905 KEQSTFARISGYVEQND--IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982 (1427)
Q Consensus 905 ~~~~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 982 (1427)
.+-++|+..|+. .+-...|.-|.|.-..++ +. +.....|-.+||...++|+- ...||||
T Consensus 648 -----hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl------py----q~ARK~LG~fGL~sHAHTik----ikdLSGG 708 (807)
T KOG0066|consen 648 -----HRLRIGWFDQHANEALNGEETPVEYLQRKFNL------PY----QEARKQLGTFGLASHAHTIK----IKDLSGG 708 (807)
T ss_pred -----ceeeeechhhhhHHhhccccCHHHHHHHhcCC------Ch----HHHHHHhhhhhhhhccceEe----eeecCCc
Confidence 223578888764 344455666666432222 21 22456788899999898873 3689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEEcc
Q 000555 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062 (1427)
Q Consensus 983 qrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~g 1062 (1427)
||-||++|.--+..|+||+|||||++||.++...+-+.|++. ...||+++|+-+. +.+.-..++|+.+.|.-.-.|
T Consensus 709 QKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdG 784 (807)
T KOG0066|consen 709 QKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEIDG 784 (807)
T ss_pred chHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhccc
Confidence 999999999999999999999999999999999999999876 5689999999764 455556788887766655566
Q ss_pred CC
Q 000555 1063 KL 1064 (1427)
Q Consensus 1063 ~~ 1064 (1427)
..
T Consensus 785 dF 786 (807)
T KOG0066|consen 785 DF 786 (807)
T ss_pred cH
Confidence 54
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=300.46 Aligned_cols=171 Identities=30% Similarity=0.428 Sum_probs=148.8
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35778876552 2458999999999999999999999999999999999765 35899999998754
Q ss_pred c-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000555 907 Q-----STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981 (1427)
Q Consensus 907 ~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 981 (1427)
. ..+++.++|++|++.+++..|++|++.+. |||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23457899999999888889999987531 899
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 982 Gqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1055 (1427)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.+|++++|++|
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999876 899999999975 466689999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=316.54 Aligned_cols=210 Identities=26% Similarity=0.384 Sum_probs=162.8
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCC
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|+++.++. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhh
Confidence 357788765531 12358999999999999999999999999999999999865 35799999998653
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCC
Q 000555 907 Q---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRH-----EFVEEVMRLV--ELDSLRDALVGFPGS 976 (1427)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~ 976 (1427)
. ..+++.++|++|++.+++ .||+||+.+.... ....... ..+++.++.+ ++.+..+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~ 136 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----G 136 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----C
Confidence 2 234567999999988876 6999999765321 1111111 1233444444 454444433 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCc
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1056 (1427)
..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++. +++|||+++|++. ++ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G 212 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-G 212 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-C
Confidence 5899999999999999999999999999999999999999999999986 4899999999986 34 45999999987 5
Q ss_pred EEEEccCC
Q 000555 1057 RVIYGGKL 1064 (1427)
Q Consensus 1057 ~~~~~g~~ 1064 (1427)
+++..|+.
T Consensus 213 ~i~~~~~~ 220 (234)
T cd03251 213 KIVERGTH 220 (234)
T ss_pred eEeeeCCH
Confidence 77777653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=318.12 Aligned_cols=213 Identities=27% Similarity=0.410 Sum_probs=169.0
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-----CCceeEEEECCeecCcc---cccceEEEEccCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS-----LKKSGNITYNGYKLDEF---HVQRTSAYISQTDN 238 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~ 238 (1427)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ ...+|+|.++|.++... ..++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 36999999999999999999999999999999999999763 01279999999987542 23456899999976
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCccccccc
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 318 (1427)
.++.+||+||+.++........+ ... . .....++.+++.+||+...+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~------~~~-----------~--------------~~~~~~~~~l~~~~l~~~~~-- 140 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRAG------ALT-----------H--------------RDGEIAWQALALAGATALVG-- 140 (272)
T ss_pred CCCCCcHHHHHhhcccccccccc------cCC-----------H--------------HHHHHHHHHHHHcCcHhhhc--
Confidence 66679999999875211000000 000 0 00123567888999974333
Q ss_pred cccccCCCCChHHhHHHHHHHHHh---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCch
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIV---------GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPP 389 (1427)
Q Consensus 319 vg~~~~~~LSGGqkqRvsia~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~ 389 (1427)
+.+..|||||||||+||++|+ .+|++++|||||+|||+.+...+.+.|+++.++.++|+|++.|+ ..
T Consensus 141 ---~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~-~~ 216 (272)
T PRK13547 141 ---RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD-PN 216 (272)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-HH
Confidence 445679999999999999999 59999999999999999999999999999876558899887555 56
Q ss_pred hHHhhcCcEEEEeCCeEEEecChHHHH
Q 000555 390 ETFDLFDDLLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 390 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 416 (1427)
++.++||++++|++|++++.|+.+++.
T Consensus 217 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 217 LAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 778899999999999999999988764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=311.94 Aligned_cols=218 Identities=19% Similarity=0.264 Sum_probs=174.4
Q ss_pred ceEEEeeeeeEEeCcc----chhc--cCC-CcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEE
Q 000555 825 LAMTFHNVNYYVDMPQ----AMRS--QGI-PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 897 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~----~~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~ 897 (1427)
+.+..+|++..++... .++. .++ ....+.+|+|+|++|+|||+++|+||||||||||+++|+|..+ +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 4678888864443321 1111 111 2245679999999999999999999999999999999999865 35799
Q ss_pred EEECCccCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000555 898 IKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977 (1427)
Q Consensus 898 i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 977 (1427)
|.++|. ++++.|+..+.+.+|+.||+.+..... ..+.++..+.++++++.+++.+..+..+ .
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence 999984 356777777778899999998764332 2234444556778888889987777655 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+.|+|||+++|++. .+.+.+|++++|++ |+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999998777999999999975 46678999999986 67
Q ss_pred EEEccCC
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~g~~ 1064 (1427)
+...|+.
T Consensus 221 i~~~g~~ 227 (264)
T PRK13546 221 LKDYGEL 227 (264)
T ss_pred EEEeCCH
Confidence 7777764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=326.52 Aligned_cols=229 Identities=25% Similarity=0.389 Sum_probs=193.3
Q ss_pred eEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccC
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
-++++|++.++ +..++|+||||+++|||++||+|.||||||||+|+|+|... +.+|+|.+||.+.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 46788887554 34679999999999999999999999999999999999765 4689999999976
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhccC-CcCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000555 906 EQS----TFARISGYVEQNDIHSPQVTVEESLWFSANLRL-SKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 906 ~~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 980 (1427)
... ....-++.|.|+..+.|++||.||+.++...+. ..-++.....+...++++.+++....++.++ +||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 432 234568999999999999999999988765543 2335666677788999999999654777775 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcEEEE
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060 (1427)
Q Consensus 981 gGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1060 (1427)
+||||.|.|||||..+++||+||||||+|+......+.+.++++.++|.+||.++|++. ++++.||++.||.+ |+++.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999986 89999999999987 57777
Q ss_pred ccCC-C-CCchhHHHHHH
Q 000555 1061 GGKL-G-VHSKTMIDYFQ 1076 (1427)
Q Consensus 1061 ~g~~-~-~~~~~~~~yf~ 1076 (1427)
.++. + ...++++...-
T Consensus 226 ~~~~~~~~~~~~lv~~Mv 243 (500)
T COG1129 226 TRPTAAETSEDELVRLMV 243 (500)
T ss_pred ecccccCCCHHHHHHHhh
Confidence 7773 3 33345555543
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=308.46 Aligned_cols=210 Identities=23% Similarity=0.285 Sum_probs=166.0
Q ss_pred EEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEEC--Cc-
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS--GY- 903 (1427)
Q Consensus 827 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~--g~- 903 (1427)
++++|+++.++.... ...++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ ..|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 578888876642100 00124699999999999999999999999999999999998653 47999998 42
Q ss_pred -cCCc---cc----ccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 000555 904 -PKEQ---ST----FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL-RDALVGFP 974 (1427)
Q Consensus 904 -~~~~---~~----~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~ 974 (1427)
+... .. .++.+||++|++.+++.+||+|++.+..... ........+.+.++++.+++.+. .+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 147 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP--- 147 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc---
Confidence 3211 11 1346899999999999999999998764321 12233344567889999999753 35443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 975 ~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1053 (1427)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+...+|+++.+.
T Consensus 148 --~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 148 --ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 579999999999999999999999999999999999999999999999777999999999954 3556899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=314.60 Aligned_cols=215 Identities=26% Similarity=0.314 Sum_probs=172.6
Q ss_pred ceEEEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--c-eeEEEEEEC
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--G-YIEGDIKIS 901 (1427)
Q Consensus 825 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~ 901 (1427)
..++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3589999988663 23689999999999999999999999999999999997542 1 258999999
Q ss_pred CccCC-------cccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCC-HHHHHHHHHHHHHHcCCcc----cccc
Q 000555 902 GYPKE-------QSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVS-KNQRHEFVEEVMRLVELDS----LRDA 969 (1427)
Q Consensus 902 g~~~~-------~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~l~L~~----~~~~ 969 (1427)
|.+.. ...+++.++|++|++.+++. |++||+.+..... ... ....++.++++++.+++.+ ..+.
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 87642 12345679999999988886 9999998764322 111 1222355777888887742 2333
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceE
Q 000555 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1427)
Q Consensus 970 ~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1049 (1427)
.+ ..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++
T Consensus 158 ~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 158 LA-----FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEE
Confidence 33 57999999999999999999999999999999999999999999999865 689999999975 467789999
Q ss_pred EEEecCcEEEEccCC
Q 000555 1050 LLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1050 ~~l~~gg~~~~~g~~ 1064 (1427)
++|++ |+++..|+.
T Consensus 231 ~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 231 AYMYM-GELIEFGAT 244 (265)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 677777764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=316.02 Aligned_cols=210 Identities=29% Similarity=0.444 Sum_probs=160.1
Q ss_pred EEeeeeeEEeCccchhccCCCcccceeccceeeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCceeEEEEEECCccCCc
Q 000555 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907 (1427)
Q Consensus 828 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 907 (1427)
+++|+++.++. .+++.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 57788765521 012468999999999999999999999999999999999865 357999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhccCCcCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCCCC
Q 000555 908 ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD-------ALVGFPGSS 977 (1427)
Q Consensus 908 ---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~~~~~ 977 (1427)
...++.++|++|++.+++ .||+|++.+....+ ..++ .++.++..++.+..+ +... ..+.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEE----VEEAAKKANIHDFIMSLPDGYDTLVG-ERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHH----HHHHHHHcChHHHHHhhccccceeec-cCCc
Confidence 223467999999988776 69999997643211 1111 222233333322111 1111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEEecCcE
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 978 ~LSgGqrqrl~ia~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1057 (1427)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++ +.+|++++|++ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999987 7899999999975 34 47999999986 67
Q ss_pred EEEccCC
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~g~~ 1064 (1427)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 8887764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.76 Aligned_cols=212 Identities=21% Similarity=0.300 Sum_probs=165.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSL--KKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999987631 1379999999987531 235679999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++.+|++||+.++....+.. .. + +. ....+..++.+++...... .
T Consensus 97 ~~~~t~~enl~~~~~~~~~~--~~---------~---------~~--------------~~~~~~~l~~~~l~~~l~~-~ 141 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIR--DR---------D---------HL--------------MEVAERSLRGAALWDEVKD-R 141 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCC--CH---------H---------HH--------------HHHHHHHHHHcCcchhhhh-h
Confidence 99899999998764322110 00 0 00 0112334455554321111 1
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
.+..++.||||||||++||++|+.+|++++|||||+|||..+...+.+.|+++. + ++|+|++.|+ ..++.+.||+++
T Consensus 142 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~-~~~~~~~~d~i~ 218 (252)
T PRK14272 142 LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHN-MHQAARVSDTTS 218 (252)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCC-HHHHHHhCCEEE
Confidence 134466799999999999999999999999999999999999999999999985 3 6888887554 567888999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|++++.|+++++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 219 FFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=313.67 Aligned_cols=211 Identities=20% Similarity=0.299 Sum_probs=164.5
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLD--SSLKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
.++|+|+|+++++||+++|+||||||||||+++|+|..+ +..+.+|+|.++|+++... ..++.++|++|++.+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 359999999999999999999999999999999999864 2112489999999987531 235679999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++. ||+||+.++....+.. .. .. .+..++..++.+++...... .
T Consensus 114 ~~~-tv~enl~~~~~~~~~~--~~------------------~~--------------~~~~~~~~l~~~~l~~~~~~-~ 157 (268)
T PRK14248 114 FPK-SIYNNITHALKYAGER--RK------------------SV--------------LDEIVEESLTKAALWDEVKD-R 157 (268)
T ss_pred Ccc-cHHHHHHHHHHhcCCC--cH------------------HH--------------HHHHHHHHHHHcCCCcchHH-H
Confidence 775 9999998864322110 00 00 00123456677776421111 1
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
-++.+..||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|||++.|+ ..++.++||+++
T Consensus 158 ~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~-~~~~~~~~d~v~ 234 (268)
T PRK14248 158 LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHN-MQQALRVSDRTA 234 (268)
T ss_pred HhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeC-HHHHHHhCCEEE
Confidence 2345668999999999999999999999999999999999999999999999854 5788887555 567888999999
Q ss_pred EEeCCeEEEecChHHHH
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~iv~~G~~~~~~ 416 (1427)
+|++|++++.|+.+++.
T Consensus 235 ~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 235 FFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=314.61 Aligned_cols=206 Identities=23% Similarity=0.393 Sum_probs=160.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.++ ..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 46999999999999999999999999999999999999875 89999999886532 2356799999998665 47
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHh--CCcccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVL--GLDLCSETVVGN 321 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~ 321 (1427)
||+||+.+... .. .... . +..++ ....+..++.+ +++ +.. +
T Consensus 91 tv~~nl~~~~~--~~--~~~~----~---------------~~~~~---------~~~~~~~l~~l~~~~~----~~~-~ 133 (237)
T cd03252 91 SIRDNIALADP--GM--SMER----V---------------IEAAK---------LAGAHDFISELPEGYD----TIV-G 133 (237)
T ss_pred hHHHHhhccCC--CC--CHHH----H---------------HHHHH---------HcCcHHHHHhCccccc----chh-h
Confidence 99999987421 10 0000 0 00000 00123344444 333 222 3
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
+.+..|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. + ++|+|++.|++ .++ +.||++++|
T Consensus 134 ~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~-~~~d~v~~l 209 (237)
T cd03252 134 EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRL-STV-KNADRIIVM 209 (237)
T ss_pred cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCH-HHH-HhCCEEEEE
Confidence 4566899999999999999999999999999999999999999999999985 3 78999877665 345 579999999
Q ss_pred eCCeEEEecChHHHHH
Q 000555 402 SEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~~ 417 (1427)
++|++++.|+.+++.+
T Consensus 210 ~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 210 EKGRIVEQGSHDELLA 225 (237)
T ss_pred ECCEEEEEcCHHHHHh
Confidence 9999999999988754
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.59 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=167.6
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCeecCcc-----cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYNGYKLDEF-----HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1427)
.++|+|+|++++|||+++|+||||||||||+++|+|+++|. ...+|+|+++|+++... ..++.++|++|++.+
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 56999999999999999999999999999999999999752 12489999999987431 235679999999876
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
+ .+|++||+.++....+.. ++ ....++++++.++|.+..+...
T Consensus 101 ~-~~tv~enl~~~~~~~~~~----------------------~~--------------~~~~~~~~l~~~~l~~~i~~~~ 143 (261)
T PRK14263 101 F-SMSIFDNVAFGLRLNRYK----------------------GD--------------LGDRVKHALQGAALWDEVKDKL 143 (261)
T ss_pred c-cccHHHHHHHHHhhcCch----------------------HH--------------HHHHHHHHHHHcCCchhhhhhh
Confidence 6 599999999875432110 00 0112566778888754322222
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
+...+.||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++. + ++|+|++.| ...++.++||+|+
T Consensus 144 -~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH-~~~~i~~~~d~v~ 219 (261)
T PRK14263 144 -KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTH-NMQQAIRVADTTA 219 (261)
T ss_pred -hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeC-CHHHHHHhCCEEE
Confidence 23566899999999999999999999999999999999999999999999984 3 678888654 4567889999999
Q ss_pred EEe--------CCeEEEecChHHHH
Q 000555 400 LLS--------EGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~--------~G~iv~~G~~~~~~ 416 (1427)
+|+ +|++++.|+.+++.
T Consensus 220 ~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 220 FFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEecccccccCCceEEEeCCHHHHH
Confidence 996 89999999998875
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=305.77 Aligned_cols=189 Identities=24% Similarity=0.343 Sum_probs=155.4
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc-------cccceEEEEccCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF-------HVQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~~~ 239 (1427)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 46999999999999999999999999999999999999875 89999999985321 134679999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHhCCcccccccc
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 319 (1427)
++.+||+||+.++....+.. .. .....++++++.+||++..+.
T Consensus 88 ~~~~t~~e~~~~~~~~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~~-- 130 (206)
T TIGR03608 88 IENETVEENLDLGLKYKKLS-----------KK------------------------EKREKKKEALEKVGLNLKLKQ-- 130 (206)
T ss_pred ccCCcHHHHHHHHHHhcCCC-----------HH------------------------HHHHHHHHHHHHcCchhhhcC--
Confidence 88899999999865432210 00 001235678899999754444
Q ss_pred ccccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEE
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 g~~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vi 399 (1427)
.++.||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++.++ ++|+|++.|++ . ..+.||+++
T Consensus 131 ---~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~-~-~~~~~d~i~ 204 (206)
T TIGR03608 131 ---KIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDP-E-VAKQADRVI 204 (206)
T ss_pred ---ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCH-H-HHhhcCEEE
Confidence 44579999999999999999999999999999999999999999999998654 88999876665 3 457899998
Q ss_pred EE
Q 000555 400 LL 401 (1427)
Q Consensus 400 lL 401 (1427)
+|
T Consensus 205 ~l 206 (206)
T TIGR03608 205 EL 206 (206)
T ss_pred eC
Confidence 75
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=315.09 Aligned_cols=206 Identities=23% Similarity=0.352 Sum_probs=158.9
Q ss_pred ceeeeCeeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCeecCcc---cccceEEEEccCCCCCCCC
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~~~~~~~l 243 (1427)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 46999999999999999999999999999999999999875 99999999887532 23456999999987665 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhHhhhhhHHHHhhcCCCChhHHHHHhhhhcCCCcccccHHHHHHHh--CCcccccccccc
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVL--GLDLCSETVVGN 321 (1427)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~ 321 (1427)
||+||+.+...... ..+ . +...+ .......++.+ |++ +.. +
T Consensus 92 tv~e~l~~~~~~~~----~~~----~---------------~~~~~---------~~~~~~~~~~l~~~~~----~~~-~ 134 (238)
T cd03249 92 TIAENIRYGKPDAT----DEE----V---------------EEAAK---------KANIHDFIMSLPDGYD----TLV-G 134 (238)
T ss_pred hHHHHhhccCCCCC----HHH----H---------------HHHHH---------HcChHHHHHhhccccc----eee-c
Confidence 99999987421110 000 0 00000 00112223333 332 222 3
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCchhHHhhcCcEEEE
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~q~~~~~~~~~D~vilL 401 (1427)
..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .++|+|++.|++ +++ +.||++++|
T Consensus 135 ~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~-~~~-~~~d~v~~l 210 (238)
T cd03249 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRL-STI-RNADLIAVL 210 (238)
T ss_pred cCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH-HHH-hhCCEEEEE
Confidence 3456799999999999999999999999999999999999999999999985 488999876654 455 489999999
Q ss_pred eCCeEEEecChHHHHH
Q 000555 402 SEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 402 ~~G~iv~~G~~~~~~~ 417 (1427)
++|++++.|+.+++.+
T Consensus 211 ~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 211 QNGQVVEQGTHDELMA 226 (238)
T ss_pred ECCEEEEeCCHHHHhh
Confidence 9999999999887754
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1427 | ||||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-12 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-12 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-11 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-11 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-11 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-11 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-11 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-11 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-11 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-11 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-11 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-10 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-10 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 8e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 8e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 8e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 9e-10 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-09 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 9e-09 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-08 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-08 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-07 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-07 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-06 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-06 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 7e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 8e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 1e-04 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 4e-04 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-04 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-04 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 7e-04 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 9e-04 |
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 870 LVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KEQSTFARISGYVEQNDIHSP 925
L+G +GAGKTT + +++ + + G + + G +E ++ Y+ +
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 101
Query: 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985
+ E L F A S ++ E VE + L V S +
Sbjct: 102 NMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVR 153
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1045
+L IA L+ NP + +DEPTSGLD A V + ++ G T++ + H ++ E
Sbjct: 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH--NMLEVEF 211
Query: 1046 F-DELLLMKRGGRVIYGG-----KLGVHSKTMIDYFQALDG 1080
D + L+ G ++ G K ++ + + F+ +
Sbjct: 212 LCDRIALIHN-GTIVETGTVEELKERYKAQNIEEVFEEVVK 251
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 46/219 (21%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL--DE 223
IL +S ++ G + L+GP +GK+T L ++ + S SG +T G + +
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 83
Query: 224 FHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
V++ +Y+ + + E F A + E E +
Sbjct: 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAG-----------FYASSSSEIEEMV----- 127
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVG 343
+ ++ GL D + S G +++ ++
Sbjct: 128 -------------------ERATEIAGL-----GEKIKDRVSTYSKGMVRKLLIARALMV 163
Query: 344 PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
+ +DE ++GLD ++ K L+ Q TIL+
Sbjct: 164 NPRLAILDEPTSGLDVLNAREVRKILKQAS-QEGLTILV 201
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 34/237 (14%)
Query: 838 MPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG-RKTGGYIE- 895
M M+ Q + E L +SG G + LVG +GAGK+TL+ +AG G I+
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58
Query: 896 GDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVE 955
+ + + A Y+ Q V L + K R E +
Sbjct: 59 AGQPLEAWSATK--LALHRAYLSQQQTPPFATPVWHYLTLH---QHDK-----TRTELLN 108
Query: 956 EVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSG 1008
+V + LD + LS + +R+ +A + ++ +DEP +
Sbjct: 109 DVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 1009 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYGG 1062
LD + + + + G +V + H D+ L+K GG+++ G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASG 215
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
T L +SG V+ G + L+GP +GKSTLL +AG G+I + G L+ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 228 ---RTSAYISQTDNHIPE-LTVRE 247
AY+SQ P V
Sbjct: 70 KLALHRAYLSQ-QQTPPFATPVWH 92
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 23/103 (22%)
Query: 328 SGGQKKRV--------TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDAT 379
SGG+ +RV T + + L +DE LD + + K L Q
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQ-LLLLDEPMNSLDVAQQSALDKILSALSQQ-GLA 185
Query: 380 ILMALLQPPPETFDL------FDDLLLLSEGHLVYQGPRAEVL 416
I+M+ DL LL G ++ G R EVL
Sbjct: 186 IVMSS-------HDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 7e-27
Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 27/218 (12%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKE 906
+ + L ++ + G + A++G +G GK+TL+D+L G R G IE
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----------- 63
Query: 907 QSTFARISGYVEQNDIHSPQVTVEESLWF--SANLRLSKEVSKNQRHEFVEEVMRLVELD 964
+ G+V Q +V + + S ++ + + + + + + L
Sbjct: 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY-QVAMQALDYLNLT 119
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1023
L + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
TVV T HQP+ + ++ LL+ +G
Sbjct: 175 AQSQNMTVVFTTHQPNQ-VVAIANKTLLLN-KQNFKFG 210
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 8e-14
Identities = 44/253 (17%), Positives = 87/253 (34%), Gaps = 59/253 (23%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
+ ++ + G + +LG GKSTLL L G G I V
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIE----------VY 65
Query: 228 RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287
++ ++ Q + +V D G + +IN + + +
Sbjct: 66 QSIGFVPQFFSSPFAYSV---LDIVLM------GRSTHINTFAKPKSH-------DYQVA 109
Query: 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI----VG 343
M+A L L L ++ + +SGGQ++ + +I
Sbjct: 110 MQA---------------LDYLNLTHLAKREFTS-----LSGGQRQLI----LIARAIAS 145
Query: 344 PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403
K + +DE ++ LD + ++ L + + T++ Q P + + + LLL++
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ-PNQVVAIANKTLLLNK 204
Query: 404 GHLVYQGPRAEVL 416
G +L
Sbjct: 205 Q-NFKFGETRNIL 216
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-24
Identities = 40/208 (19%), Positives = 86/208 (41%), Gaps = 25/208 (12%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L ++ G + G +G GKTTL+ ++ + +G+I +G P + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPITK-VKGK 79
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
I ++ + I +++VE+ L A+L V N+ + + + VE+ L+ L
Sbjct: 80 I-FFLPEEIIVPRKISVEDYLKAVASL---YGVKVNKNE--IMDALESVEVLDLKKKLGE 133
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1031
S G +R+ +A L+ N I +D+P +D + V++++ + + G +
Sbjct: 134 L--SQG----TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 1032 VCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
+ + D + + I
Sbjct: 188 ISSRE-----ELSYCDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 3e-15
Identities = 33/249 (13%), Positives = 78/249 (31%), Gaps = 55/249 (22%)
Query: 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD 222
+ +L ++ ++ G + GP GK+TLL ++ L G I YNG +
Sbjct: 18 VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT 74
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
+ V+ ++ + +++V + A + + + E
Sbjct: 75 K--VKGKIFFLPEEIIVPRKISVEDYLKAVAS-----------LYGVKVNKNE------- 114
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGL-DLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
L+ + + DL + +S G +RV +
Sbjct: 115 -------------------IMDALESVEVLDL-------KKKLGELSQGTIRRVQLASTL 148
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401
+ + +D+ +D + +++K + + + I+ + E D L
Sbjct: 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS-----REELSYCDVNENL 203
Query: 402 SEGHLVYQG 410
+
Sbjct: 204 HKYSTKIDK 212
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 31/227 (13%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKEQSTF 910
+L +S + G L G +GAGKTTL+++L T G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 911 ------ARISGYVEQNDIHSPQVTVEESLW------FSANLRLSKEVSKNQRHEFVEEVM 958
I G+V + + E + ++ + +++ R +++
Sbjct: 91 SAETVRQHI-GFVSHS--LLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQLL 146
Query: 959 RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
+LV + + +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 147 KLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLL 201
Query: 1019 RTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ + ++ H +I F ++LL+K G+ I G
Sbjct: 202 SILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 52/274 (18%), Positives = 90/274 (32%), Gaps = 72/274 (26%)
Query: 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL- 221
+ TIL +S + G +L G +GK+TLL L SG + G
Sbjct: 30 MKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPG 86
Query: 222 ----DEFHVQRTSAYISQ--TDNHIPELTVRET-----FDFAARWQGANEGFAAYINDLN 270
V++ ++S + V + F +Q
Sbjct: 87 KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQ-------------- 132
Query: 271 RLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGL-DLCSETVVGNDMIRGVSG 329
EI +A +LK++G+ I +S
Sbjct: 133 --------DIDDEIRN--EA------------HQLLKLVGMSAK------AQQYIGYLST 164
Query: 330 GQKKRVTTGEMI----VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDA-TILMAL 384
G+K+RV MI +G + L +DE + GLD ++ L + ++
Sbjct: 165 GEKQRV----MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVT 220
Query: 385 --LQPPPETFDLFDDLLLLSEGHLVYQGPRAEVL 416
++ E F +LLL +G + QG ++L
Sbjct: 221 HFIE---EITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-22
Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 911
+L+ G FS + ++G +G GKTTL+ +LAG + G + +S
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS---------- 416
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
Q TV + F +R + Q F +V++ + +D + D
Sbjct: 417 ----MKPQKIAPKFPGTVRQ--LFFKKIR--GQFLNPQ---FQTDVVKPLRIDDIIDQ-- 463
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1030
LS + +R+ I + L I +DEP++ LD+ I + +R + +T
Sbjct: 464 -EVQH--LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520
Query: 1031 VV 1032
Sbjct: 521 AF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-18
Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 31/215 (14%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKE--QSTFARISGYVEQ 919
PG + LVG++G GK+T + +LAG + G + + K S + +
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 920 NDIHS---PQV------TVEESLWFSA-NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
+DI + PQ ++ + L+L E + E V+ +++++L+++
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLENVLKR 217
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1029
LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 ---DIEK--LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1030 TVVCTIHQPSIDIFEA---FDELLLMKRGGRVIYG 1061
V+C H D+ D + ++ G +YG
Sbjct: 273 YVICVEH----DLSVLDYLSDFVCIIY-GVPSVYG 302
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 44/250 (17%), Positives = 69/250 (27%), Gaps = 60/250 (24%)
Query: 136 SRALPTLVNATRDVFERILTGLRIFKP---KRHSLTILNDVSGVVKPGRMTLLLGPPASG 192
+ AL + + + P K +LN G + +++G +G
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTG 390
Query: 193 KSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFA 252
K+TL+ LAG L G + Q TVR+ F
Sbjct: 391 KTTLIKLLAGALKPD---EGQDIPKL----------NVSMKPQKIAPKFPGTVRQLFFKK 437
Query: 253 ARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD 312
R Q N F + R++ +
Sbjct: 438 IRGQFLNPQFQTDVVKPLRIDDIIDQEVQ------------------------------H 467
Query: 313 LCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNF 372
L SGG+ +RV + P +DE S LDS K +R F
Sbjct: 468 L--------------SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 373 VHQMDATILM 382
+ T +
Sbjct: 514 ILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 38/216 (17%), Positives = 71/216 (32%), Gaps = 29/216 (13%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
+ +PG++ L+G GKST L LAGK +L + + + F
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150
Query: 228 RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287
Y ++ + ++ + + +L +L E++
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP--VQKVGELLKLRMEKSPE-------- 200
Query: 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKT 347
+K+L L E V+ D I +SGG+ +R G V
Sbjct: 201 -------------DVKRYIKILQL----ENVLKRD-IEKLSGGELQRFAIGMSCVQEADV 242
Query: 348 LFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
DE S+ LD + +R+ + ++
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICV 277
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 2e-22
Identities = 37/206 (17%), Positives = 79/206 (38%), Gaps = 31/206 (15%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAG-RKTGGYIEGDIKISGYPKEQSTFARISGYVEQN-D 921
G ++G +G+GKTTL+ ++G G+I I+G E Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL-DSLRDALVGFPGSSGLS 980
+ VTV + ++ L + + + E+++ ++L + + LS
Sbjct: 83 AYEIGVTVNDIVYLY--EELKG-LDR----DLFLEMLKALKLGEEILRR---KLYK--LS 130
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH---- 183
Query: 1041 DIFEAF---DELLLMKRGGRVIYGGK 1063
++ + G R+
Sbjct: 184 ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 47/268 (17%), Positives = 90/268 (33%), Gaps = 71/268 (26%)
Query: 159 IFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG 218
K + L +++ V G ++LGP SGK+TLL A++G L SGNI NG
Sbjct: 10 TLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING 64
Query: 219 YKLDEFHVQRTSAYISQ-TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERN 277
++ + ++ Y + + + +TV + L L+++
Sbjct: 65 MEVRK--IRNYIRYSTNLPEAYEIGVTVNDIVYLYEE--------------LKGLDRDL- 107
Query: 278 IRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTT 337
+LK L L + + +S GQ V T
Sbjct: 108 ------------------------FLEMLKALKLG----EEILRRKLYKLSAGQSVLVRT 139
Query: 338 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRN------FV-HQMDATILMALLQPPPE 390
+ + + +DE +D++ I + ++ V H++D
Sbjct: 140 SLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELD------------M 187
Query: 391 TFDLFDDLLLLSEGHLVYQ-GPRAEVLE 417
+ G+ + +E+LE
Sbjct: 188 LNLYKEYKAYFLVGNRLQGPISVSELLE 215
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 3e-22
Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 40/249 (16%)
Query: 826 AMTFHNVNY-YVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDV 884
+ NV++ + +G P +K + L NVS V + G + G++G+GK+TL+ +
Sbjct: 2 RIEVVNVSHIF--------HRGTPLEK-KALENVSLVINEGECLLVAGNTGSGKSTLLQI 52
Query: 885 LAG--RKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSP--QV---TVEESLWFSA 937
+AG T GD+ G K+ R G Q P Q V + + F+
Sbjct: 53 VAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQY----PEDQFFAERVFDEVAFAV 104
Query: 938 -NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS--GLSTEQRKRLTIAVELV 994
N ++ V++ M V LD F LS +++R+ IA +V
Sbjct: 105 KNFYPDRDPVPL-----VKKAMEFVGLDFD-----SFKDRVPFFLSGGEKRRVAIASVIV 154
Query: 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054
P I+ +DEP GLD ++R V G+TV+ H + D ++++++
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK 213
Query: 1055 GGRVIYGGK 1063
G+ ++ G
Sbjct: 214 -GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 56/267 (20%), Positives = 99/267 (37%), Gaps = 71/267 (26%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRT 229
L +VS V+ G L+ G SGKSTLL +AG + SG++ Y+G + + ++R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGERKKGYEIRRN 79
Query: 230 SAYISQT-DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFM 288
Q ++ V + + A FA +N P +
Sbjct: 80 IGIAFQYPEDQFFAERVFD--EVA---------FAV-----------KNFYPDRDPVP-- 115
Query: 289 KASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV-----SGGQKKRVTTGEMIVG 343
++ +GLD D + SGG+K+RV I
Sbjct: 116 ------------LVKKAMEFVGLDF--------DSFKDRVPFFLSGGEKRRVA----IAS 151
Query: 344 -----PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA---LLQPPPETFDLF 395
P L +DE GLD +++ + + + T+++ + +
Sbjct: 152 VIVHEP-DILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDI----ETVINHV 205
Query: 396 DDLLLLSEGHLVYQGPRAEVLEFFESL 422
D +++L +G V+ G R E LE ++
Sbjct: 206 DRVVVLEKGKKVFDGTRMEFLEKYDPR 232
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-22
Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 37/233 (15%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L +G G + ++G +G GKTT +L G G + + +I Y K Q
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQ----- 337
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
+ N TV++ L + + + + F EEV + + L L ++
Sbjct: 338 ---RIFPN----YDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLES--- 381
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
LS + ++L IA L + +D+P+S LD IV + ++ + V
Sbjct: 382 NVND--LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 1033 CTI-HQPSIDIFEAF---DELLLMKRGGRVIYGGKLGVHSKT--MIDYFQALD 1079
I H D+ D +++ K G G + M ++ + L+
Sbjct: 440 FIIDH----DLSIHDYIADRIIVFK-GEPEKAGLATSPVTLKTGMNEFLRELE 487
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-16
Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 29/215 (13%)
Query: 861 VFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTF--ARISGYVE 918
+ ++G +G GKTT++ +LAG + + + K+ G + F I Y +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGKEIYNYFK 79
Query: 919 ------QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
+H Q S + + + ++K +EV L+ + +L +
Sbjct: 80 ELYSNELKIVHKIQYVEYASKFLKGTVN--EILTKIDERGKKDEVKELLNMTNLWNK--- 134
Query: 973 FPG--SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
S G +RL +A L+ + D+P+S LD R + + +R + +
Sbjct: 135 DANILSGG----GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKY 189
Query: 1031 VVCTIHQPSIDIF---EAFDELLLMKRGGRVIYGG 1062
V+ H D+ D + ++ G +YG
Sbjct: 190 VIVVDH----DLIVLDYLTDLIHIIY-GESSVYGR 219
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 7e-11
Identities = 37/219 (16%), Positives = 72/219 (32%), Gaps = 55/219 (25%)
Query: 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD 222
K+ L +G K G + +LGP GK+T L G++ + G++T L
Sbjct: 277 KKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL- 332
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
+Y Q + TV++ + A++ + S
Sbjct: 333 --------SYKPQRIFPNYDGTVQQYLENASK---------------------DALSTSS 363
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
+ V K L L E+ V + +SGG+ +++ +
Sbjct: 364 WF-----------------FEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLA 401
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
+D+ S+ LD + + K ++ + A
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 30/213 (14%), Positives = 65/213 (30%), Gaps = 45/213 (21%)
Query: 176 VVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQ 235
K + +LG GK+T+L LAG++ + + L F + Y +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 236 TDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGG 295
+ N+L + K + + + + +
Sbjct: 81 ---------LYS-------------------NELKIVHKIQYVEYASKFLKGTVNEILTK 112
Query: 296 KKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI-----VGPRKTLFM 350
D V ++L + + D +SGG +R+ ++
Sbjct: 113 IDERGKKDEVKELLNM----TNLWNKD-ANILSGGGLQRL----LVAASLLREA-DVYIF 162
Query: 351 DEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
D+ S+ LD + K +R + +++
Sbjct: 163 DQPSSYLDVRERMNMAKAIRELLKNK--YVIVV 193
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-21
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L G G + +VG +G GKTT + +LAG T G IE D+ ++
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA----------- 350
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
Y Q + TV E L + SK + + E+++ + + L D
Sbjct: 351 ---YKPQYIKADYEGTVYELL-------SKIDASKLNSNFYKTELLKPLGIIDLYDR--- 397
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1031
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 398 EVNE--LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1032 V 1032
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-15
Identities = 56/288 (19%), Positives = 105/288 (36%), Gaps = 50/288 (17%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGR----KTGGYIEGDIKISGYPKE--QSTFARISG-- 915
G++ +VG +G GK+T + +LAG+ G D I + Q+ F ++
Sbjct: 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 916 --------YVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
YV+ P+ + + + + K +EEV++ +EL+++
Sbjct: 106 IRPVVKPQYVDLI----PKAVKGK---------VIELLKKADETGKLEEVVKALELENVL 152
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+ + S G + +R+ IA L+ N + F DEP+S LD R R +R +
Sbjct: 153 EREI-QHLSGG----ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE 207
Query: 1028 GRTVVCTIHQPSIDIF---EAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSI 1084
G++V+ H D+ D + ++ G +YG +GI
Sbjct: 208 GKSVLVVEH----DLAVLDYLSDIIHVV-YGEPGVYG--------IFSQPKGTRNGINEF 254
Query: 1085 PSGYNPATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSV 1132
GY + K G + Y + + +
Sbjct: 255 LRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRL 302
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 43/222 (19%), Positives = 72/222 (32%), Gaps = 63/222 (28%)
Query: 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD 222
K + L G +K G + ++GP GK+T + LAG + + G I ++
Sbjct: 295 KDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDL---- 347
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
T AY Q E TV E ++ + N
Sbjct: 348 ------TVAYKPQYIKADYEGTVYELLS-----------------KIDASKLNSNFY--- 381
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV---SGGQKKRVTTGE 339
+LK LG+ + R V SGG+ +RV
Sbjct: 382 -------------------KTELLKPLGII--------DLYDREVNELSGGELQRVAIAA 414
Query: 340 MIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
++ +DE S LD + + +R+ + + + T L
Sbjct: 415 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-06
Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 68/232 (29%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSL---KKSGNITYNGYKLDEF 224
+ VVK G + ++GP +GKST + LAG+L +L S + ++ +E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 225 HVQRTSAYI--------SQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKER 276
Q + IP+ + E L + ++
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKV----------IEL-------LKKADETG 137
Query: 277 NIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVT 336
+ + V+K L L E V+ + I+ +SGG+ +RV
Sbjct: 138 KL------------------------EEVVKALEL----ENVLERE-IQHLSGGELQRV- 167
Query: 337 TGEMI-----VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
I F DE S+ LD + +R + ++L+
Sbjct: 168 ---AIAAALLRNA-TFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVV 214
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-21
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L G G + +VG +G GKTT + +LAG T G +E D+ ++
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA----------- 420
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
Y Q + TV E L + SK + + E+++ + + L D
Sbjct: 421 ---YKPQYIKAEYEGTVYELL-------SKIDSSKLNSNFYKTELLKPLGIIDLYDR--- 467
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1031
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 468 NVED--LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 1032 V 1032
+
Sbjct: 526 L 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 5e-16
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 28/220 (12%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR----KTGGYIEGDIKISGYP--KEQ 907
+ + G++ +VG +G GKTT + +LAG+ D I + + Q
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 908 STFARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL 966
+ F R+ G + + PQ +R + + K EEV++ +EL+++
Sbjct: 166 NYFERLKNGEIRP--VVKPQYVDLLPKAVKGKVR--ELLKKVDEVGKFEEVVKELELENV 221
Query: 967 RDALVGFPG--SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
D S G + +R+ IA L+ F DEP+S LD R V R +R
Sbjct: 222 LDR---ELHQLSGG----ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274
Query: 1025 VDTGRTVVCTIHQPSIDIF---EAFDELLLMKRGGRVIYG 1061
+ G+ V+ H D+ D + ++ G +YG
Sbjct: 275 ANEGKAVLVVEH----DLAVLDYLSDVIHVVY-GEPGVYG 309
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 3e-12
Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 57/219 (26%)
Query: 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD 222
K + L G ++ G + ++GP GK+T + LAG + + G + ++
Sbjct: 365 KDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL---- 417
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
T AY Q E TV E ++ ++ + N
Sbjct: 418 ------TVAYKPQYIKAEYEGTVYE-----------------LLSKIDSSKLNSNFY--- 451
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
+LK LG+ + V + +SGG+ +RV ++
Sbjct: 452 -------------------KTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLL 487
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
+DE S LD + + +R+ + + + T L
Sbjct: 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 8e-09
Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 58/227 (25%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSL---KKSGNITYNGYKLDEF 224
+ +VK G + ++GP +GK+T + LAG+L +L S + ++ +E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 225 HVQRTSAYI--------SQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKER 276
Q + +P+ + +L + E
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVK------------------GKVRELLKKVDEV 206
Query: 277 NIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVT 336
+ V+K L L E V+ + + +SGG+ +RV
Sbjct: 207 GK-----------------------FEEVVKELEL----ENVLDRE-LHQLSGGELQRVA 238
Query: 337 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
++ F DE S+ LD ++ + +R ++ +L+
Sbjct: 239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVV 284
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 2e-20
Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 33/223 (14%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KEQSTF 910
L ++ G +TA++G +G GK+TL G + + G I P +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 911 ARIS---GYVEQNDIHSP--QV---TVEESLWFS-ANLRLSKEVSKNQRHEFVEEVMRLV 961
++ G V Q+ P Q+ +V + + F N++L ++ + +R V+ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPEDEIR-KR---VDNALKRT 131
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
++ L+D LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 GIEHLKDK---PTHC--LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 1022 RN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ G T++ H + D + +MK GRVI G
Sbjct: 187 VEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 4e-08
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 20/122 (16%)
Query: 328 SGGQKKRVTTGEMIVG-----PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
S GQKKRV I G P K L +DE + GLD +I+K L ++ TI++
Sbjct: 145 SFGQKKRVA----IAGVLVMEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199
Query: 383 A---LLQPPPETFDLFDDLLLLSEGHLVYQGPRAEVL---EFFESLGFQLPPRKGVADFL 436
A + D++ ++ EG ++ QG EV E + +LP + + L
Sbjct: 200 ATHDI----DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEIL 255
Query: 437 QE 438
+E
Sbjct: 256 KE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE 223
L ++ +K G +T +LG GKSTL G L S SG I ++ +D
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY 74
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 25/202 (12%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG-YIEGDIKISGYPKE 906
+ ++L +S G +++G+SG+GK+TL+ +L T G ++ ++
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK 74
Query: 907 QSTFAR---ISGYVEQ--NDIHSPQVTVEESLWFSANLRLS---KEVSKNQRHEFVEEVM 958
+ + R + G+V Q I P++T E N+ + K + E E ++
Sbjct: 75 ELSLLRNRKL-GFVFQFHYLI--PELTALE------NVIVPMLKMGKPKKEAKERGEYLL 125
Query: 959 RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
+ L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 126 SELGLGDKLSR---KP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 1019 RTVRNTVDTGRTVVCTIHQPSI 1040
+ G ++V H+ +
Sbjct: 181 DIFLKINEGGTSIVMVTHEREL 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 7e-16
Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 18/208 (8%)
Query: 843 RSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG-YIEGDIK 899
++ + E+ + L NV+ G +++G SG+GK+T+++++ + T G +IK
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 900 ISGYPKEQSTFAR---ISGYVEQ--NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFV 954
+ ++ T R I G+V Q N I P +T E++ + +S +R +
Sbjct: 69 TNDLDDDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRA 125
Query: 955 EEVMRLVEL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013
E +++ EL + + P + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 126 LECLKMAELEERFANHK---P--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180
Query: 1014 AAIVMRTVRN-TVDTGRTVVCTIHQPSI 1040
+M+ ++ + G+TVV H ++
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 49/239 (20%), Positives = 80/239 (33%), Gaps = 60/239 (25%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYN 217
+ +K + L +V+ +K G ++GP SGKST +L + G LD G
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKP--TEGE---- 61
Query: 218 GYKLDEFHVQRTSA------------YISQTDNHIPELTVRETFDFAARWQGAN-EGFAA 264
+D ++ Q N IP LT E N E
Sbjct: 62 -VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALE-----------NVELPLI 109
Query: 265 YINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324
+ +ER R LK+ L+ N +
Sbjct: 110 FKYRGAMSGEERRKR----------------------ALECLKMAELEERFANHKPNQL- 146
Query: 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG-LDSSTTFQIVKCLRNFVHQMDATILM 382
SGGQ++RV + + D+ T LDS T +I++ L+ + T+++
Sbjct: 147 ---SGGQQQRVAIARALANNPPIILADQ-PTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 37/203 (18%)
Query: 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQS 908
+ L VS + G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 909 -------TFARISGYVEQNDIHS-PQVTVEE-----------SLWFSANLRLSKEVSKNQ 949
TF Q ++TV E S S + +
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 950 RHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
E +++ ++L L D G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 V-EKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 1010 DARAAAIVMRTVRNTVDTGRTVV 1032
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 46/224 (20%), Positives = 75/224 (33%), Gaps = 43/224 (19%)
Query: 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV 226
L+ VS V G +TL++GP SGKSTL+ + G L + G + + +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 227 -QRTSAYISQTDNHI---PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
+ I +T E+TV E + ++E + +
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENL-LIGEICPGESPLNSLFYKKWIPKEEEMVEKAF 135
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE--- 339
+I L+ L L + G +SGGQ K V E
Sbjct: 136 KI---------------------LEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGR 166
Query: 340 -MIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
++ P K + MDE G+ I + + T L+
Sbjct: 167 ALMTNP-KMIVMDEPIAGVAPGLAHDIFNHVLE-LKAKGITFLI 208
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 3e-15
Identities = 89/411 (21%), Positives = 155/411 (37%), Gaps = 78/411 (18%)
Query: 804 INTTSAPESGKKKGMILPFQPLAMTFHNVNY-YVDMPQAMRSQGIPEKKLQLLSNVSGVF 862
I+ + +S K G + F N+++ Y + Q+L ++
Sbjct: 365 IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEV-----------QILKGLNLKV 413
Query: 863 SPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYP-KE-QSTFAR--ISGY 916
G ALVG+SG GK+T + ++ Y ++G + I G + + R I G
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSIDGQDIRTINVRYLREII-GV 468
Query: 917 VEQNDIHSPQVTVEESLWFSA----NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL-- 970
V Q E + F+ N+R +E + + +E+ ++ L
Sbjct: 469 VSQ-----------EPVLFATTIAENIRYGRE---DVTMDEIEKAVKEANAYDFIMKLPH 514
Query: 971 -----VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
VG G+ LS Q++R+ IA LV NP I+ +DE TS LD + A+V +
Sbjct: 515 QFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-A 572
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIP 1085
GRT + H+ S + A D + GG ++ G H + M GI
Sbjct: 573 REGRTTIVIAHRLST-VRNA-DVIAGFD-GGVIVEQGN---HDELM-----REKGI---- 617
Query: 1086 SGYN------PATWMLEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEP 1139
Y A +E+ A + K +D D+ ++ S+ P +
Sbjct: 618 --YFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQD 675
Query: 1140 LKFSSTYSQDPLSQFFICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVF 1190
K S+ + D FW+ ++ S ++ + A+I G +
Sbjct: 676 RKLSTKEALDEDVPPA-SFWR--ILKLNSTEWPY--FVVGIFCAIINGGLQ 721
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 44/205 (21%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYP- 904
+L +S G ALVGSSG GK+T++ D +AG + + G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEI 1097
Query: 905 KEQSTF---ARISGYVEQNDIHSP---QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVM 958
K+ + A++ G V Q P ++ E N+ S+ +E +
Sbjct: 1098 KQLNVQWLRAQL-GIVSQE----PILFDCSIAE------NIAYGDN-SRVVSYEEIVRAA 1145
Query: 959 RLVELD----SLRDAL---VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
+ + SL D VG G+ LS Q++R+ IA LV P I+ +DE TS LD
Sbjct: 1146 KEANIHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Query: 1012 RAAAIVMRTVRNTVDTGRTVVCTIH 1036
+ +V + + GRT + H
Sbjct: 1205 ESEKVVQEAL-DKAREGRTCIVIAH 1228
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 7e-15
Identities = 103/645 (15%), Positives = 192/645 (29%), Gaps = 181/645 (28%)
Query: 8 EYFEVEIDGTARESFTRASNAESLEEDEDELMWAAIARLPSQKQGNFALLKTTTPRNGGE 67
+ F D + + + S EE + I G L T
Sbjct: 27 DAFVDNFDCKDVQDMPK--SILSKEEIDH------IIMSKDAVSGTLRLFWTL------- 71
Query: 68 AKTETIDVRKLNRSRRELVVSKALATNDQDNYK-LLSAIK-ERLDRVGIEVPKVEVRFQN 125
S++E +V K + + NYK L+S IK E+ + +E R
Sbjct: 72 ------------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--- 116
Query: 126 LKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLL 185
+ ++ N +R + LR +L L V+ +
Sbjct: 117 ----DRLYNDNQVFAKY-NVSR---LQPYLKLR------QALLELRPAKNVL-------I 155
Query: 186 LGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYIS----QTDNHIP 241
G SGK+ + L + K I F +++ + +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKI---------F-------WLNLKNCNSPETVL 199
Query: 242 ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVS 301
E+ + + W ++ + ++ ++ E +K+ K +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--------LLKS-----KPYENC 246
Query: 302 TDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE------MIVGPRKTLFMDEIST 355
L VL L++ + + K +TT + + +D S
Sbjct: 247 ----LLVL-LNVQNAKA-----WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 356 GLDSSTTFQIV-KCLRNFV----HQMDAT------ILMALLQPPPETFD-----LFDDLL 399
L ++ K L ++ T I+ ++ T+D D L
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 400 LLSEGHLVYQGPRAEVLEFFESLG-FQLPPRKGV---ADFLQEVTSKKDQAQYWADPSKP 455
+ E L P AE + F+ L F L W D K
Sbjct: 357 TIIESSLNVLEP-AEYRKMFDRLSVF----PPSAHIPTILLS---------LIWFDVIKS 402
Query: 456 YVFLPVSEIAK---AFKDSRFGKALKSSLSVP--YDKSKCHPS---ALSKT---RYAVSK 504
V + V+++ K K + +S++S+P Y + K AL ++ Y + K
Sbjct: 403 DVMVVVNKLHKYSLVEKQPK-----ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 505 WELFRTCFAREILLIQRHSFLYIFRTCQVAFVGF--VACTMFLRTRLHPTDEKNGNLYLS 562
F + L+ + Y + + +G R L ++L
Sbjct: 458 ------TFDSDDLIPP-YLDQYFY-----SHIGHHLKNIEHPERMTLFR------MVFLD 499
Query: 563 CLFFA--VVH--MMFNGFSELPIMITRLPVFYKQ--RDNYFHPAW 601
F + H +N + + +L FYK DN P +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDN--DPKY 541
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 1e-10
Identities = 110/793 (13%), Positives = 209/793 (26%), Gaps = 288/793 (36%)
Query: 131 DVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPA 190
D +TG +D+ F + + ++ + ++
Sbjct: 8 DFETGEHQY-----QYKDILSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 191 SGKSTLLLALAGKLDSSLKKSGNITY----NGYKLD-EFHVQRTSAYISQTDNHIPELTV 245
+ TL L + L K + +++ +F + +T+ P +
Sbjct: 60 AVSGTLRL-----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-----KTEQRQPSMMT 109
Query: 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIR-------PSPEIDAF-MKASSVGGKK 297
R + R N+ FA Y +++RL+ +R P+ + + S GK
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKT 164
Query: 298 HSVSTDYVLKVLGLDLCSETVVGNDMIRGV---SGGQKKRVTTGEMIVGPRKTLFMD--- 351
+ LD+C V M + + E ++ + L
Sbjct: 165 ----------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQKLLYQIDP 211
Query: 352 EISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQGP 411
++ D S+ ++ +H + A + L P E + LL+L V
Sbjct: 212 NWTSRSDHSSN------IKLRIHSIQAELRRLLKSKPYE-----NCLLVLLN---VQ--- 254
Query: 412 RAEVLEFFESLGFQ----LPPR-KGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAK 466
A+ F L R K V DFL T+ + + +
Sbjct: 255 NAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTH---------------ISLDHHSM 296
Query: 467 AFKDSR----FGKALKSSLS-VPYDKSKCHPSALS----KTRYAVSKWELFRTCFAREIL 517
K L +P + +P LS R ++ W+ ++ ++
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 518 LIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVVHMMFNGFS 577
I S L P + + ++ F
Sbjct: 357 TIIESSL----------------------NVLEPAEYRK--MFDRLSVF----------- 381
Query: 578 ELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETG 637
+ + I P +L ++W V+ V
Sbjct: 382 ---------------PPS-----------AHI---PTILLS-LIWFDVIKSDV------- 404
Query: 638 RFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPW 697
MVV N SL+ +
Sbjct: 405 -----------------------------MVVVNKLHKYSLV---------------EKQ 420
Query: 698 WSWAYWVSPLSYAQSAISVNEFAAARWKKKSVIGDNTIGYNVL-----HTHSLPSGD-YW 751
+ P Y + + + A +S++ YN+ P D Y+
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALH---RSIVDH----YNIPKTFDSDDLIPPYLDQYF 473
Query: 752 YW-IGVGALLLYSL----------LFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQ 800
Y IG + L LF V +L+ R ++ K
Sbjct: 474 YSHIG------HHLKNIEHPERMTLFRMV------FLD-FR----FLEQK---------- 506
Query: 801 QFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSG 860
I S + G IL T + +Y + E+ + + +
Sbjct: 507 ---IRHDSTAWNA--SGSILN------TLQQLKFYKP--YICDNDPKYERLVNAILD--- 550
Query: 861 VFSPGVLTALVGS 873
F P + L+ S
Sbjct: 551 -FLPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 3e-10
Identities = 99/703 (14%), Positives = 197/703 (28%), Gaps = 190/703 (27%)
Query: 760 LLYSLLFNSVVTLALAYLNPLRKSQVVID---DKEENSVKMA-----KQQFE-INTTSAP 810
+ S+L + + + + + + K+E V+ + ++ + +
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 811 ESGKKKGMILPFQPLAMTFHNVN-----YYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPG 865
E + M + +N N Y V Q + L L V
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLELRPAKNVL--- 154
Query: 866 VLTALVGSSGAGKTTL-MDVLAGRKTGGYIEGDI---KISGYPKEQSTFARISGYVEQND 921
+ G G+GKT + +DV K ++ I + ++ + + Q D
Sbjct: 155 ----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQ-RHEFVEEVMR--LVELDSLRDALV--GF-PG 975
P T S+N++L + + R + L+ L ++++A F
Sbjct: 211 ---PNWTSRSD--HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCT 1034
L T + K++T + A + I +D + L +++++ + V T
Sbjct: 266 CKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 1035 IHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATWM 1094
+ + I + D ATW
Sbjct: 325 TNPRRLSIIAES------------------------IRD---------------GLATW- 344
Query: 1095 LEVTTAATEEKLGVDFADVYRSSEQYRVVESSIKNLSVPPPGSEPLKFSSTYSQDPLSQF 1154
D + ++ESS+ L EP ++ + +
Sbjct: 345 --------------DNWKHVNCDKLTTIIESSLNVL-------EPAEYRKMFDR-----L 378
Query: 1155 FICFWKQNLIYWRSPQYNAVRLAFTVAAALILGSVFWDIGSKRSSTQGLFMVMGALYASC 1214
+ F I P L S+ W + +V+ L+
Sbjct: 379 SV-FPPSAHI----P-----------TILL---SLIWF----DVIKSDVMVVVNKLHKYS 415
Query: 1215 LFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIPYAVAQGLVEMPYVFVQTIIFGFITF 1274
L S++ I SI + K Y A+ + +V+ Y
Sbjct: 416 LVEKQPKESTIS-IPSIYLE--LKVKLENEY-----ALHRSIVDH-Y------------- 453
Query: 1275 FMINFERTARKFFLFLVFMFLTFSYFTFYGMMAVGLTPNQHLAAVISS---AFYSLWNLQ 1331
+ F + YF + +G HL + + + L
Sbjct: 454 ------NIPKTFDSDDLIPPYLDQYFYSH----IG----HHLKNIEHPERMTLFRMVFLD 499
Query: 1332 SGFL---IPRPSIPGWWIWFYYISPVAWTLRGIVSSQLGDVET---MIV--EPTFRGTVK 1383
FL I S AW G + + L ++ I +P + V
Sbjct: 500 FRFLEQKIRHDST-------------AWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 1384 EYLEESLGFGPGMVGVSAAVLVAFSLLFFGSFAFSVKFLNFQK 1426
L+ ++ L+ +L+ F Q+
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 65/257 (25%), Positives = 105/257 (40%), Gaps = 69/257 (26%)
Query: 828 TFHNVN--YYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM--- 882
TF N+ Y D P +L N++ G + +VG SG+GK+TL
Sbjct: 9 TFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
Query: 883 ----DVLAGRKTGGYIEGDIKISGYPKEQSTFA---RISGYVEQNDIHSPQVTVEESLWF 935
G+ + I G+ + R G V Q +++
Sbjct: 56 QRFYIPENGQ---------VLIDGHDLALADPNWLRRQVGVVLQ-----------DNVLL 95
Query: 936 SA----NLRLSK------EVSKNQR----HEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
+ N+ L+ +V + H+F+ E L + +VG G+ LS
Sbjct: 96 NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAG-LSG 148
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1041
QR+R+ IA LV NP I+ DE TS LD + ++MR + GRTV+ H+ S
Sbjct: 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST- 206
Query: 1042 IFEAFDELLLMKRGGRV 1058
+ A D +++M++G V
Sbjct: 207 VKNA-DRIIVMEKGKIV 222
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 3e-13
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 56/229 (24%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYP- 904
+ L +VS PG ALVG SGAGK+T++ D+ +G I+I G
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDI 118
Query: 905 ---KEQSTFARISGYVEQ-----NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEE 956
+ S + I G V Q ND T+ + N+R + ++ VE
Sbjct: 119 SQVTQASLRSHI-GVVPQDTVLFND------TIAD------NIRYGRV---TAGNDEVEA 162
Query: 957 VMRLVELDSLRDALVGFP-------GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTS 1007
+ + DA++ FP G G LS +++R+ IA ++ P II +DE TS
Sbjct: 163 AAQAAGIH---DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATS 219
Query: 1008 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056
LD + ++ V RT + H+ S + A D++L++K G
Sbjct: 220 ALDTSNERAIQASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 869 ALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFARISGYVEQNDIHSP 925
L+G +GAGK+ ++++AG + G + I+ P E+ R G+V Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985
++V ++ + LR V + +R V E+ + + L D P LS +R+
Sbjct: 84 HLSVYRNIAYG--LR---NVERVERDRRVREMAEKLGIAHLLDR---KPAR--LSGGERQ 133
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDAR 1012
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 45/227 (19%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYP--- 904
+ + L +++ G ALVG +G+GK+T+ +L R Y EGDIKI G
Sbjct: 30 QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNK 85
Query: 905 -KEQSTFARISGYVEQ-----NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVM 958
S + I G V Q N+ T++ N+ K + + EEV+
Sbjct: 86 YNRNSIRSII-GIVPQDTILFNE------TIKY------NILYGKLDATD------EEVI 126
Query: 959 RLVELDSLRDALVGFP-------GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
+ + L D + P G+ G LS +R+R+ IA L+ +P I+ DE TS L
Sbjct: 127 KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSL 186
Query: 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056
D++ + + V + + RT++ H+ S I A + ++L+ +G
Sbjct: 187 DSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 911
+ VS G + L+G SG+GKTT++ ++AG R T G + G +++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
R G V QN +TV +++ F LR + V K++ V E++R + L+S +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFG--LREKR-VPKDEMDARVRELLRFMRLESYANR-- 141
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
FP LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 142 -FPHE--LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 37/182 (20%)
Query: 855 LSNVSGVFSPGVLTA---------------LVGSSGAGKTTLMDVLAG--RKTGGYIE-G 896
+ NVS VF G + A ++G SGAGKTT M ++AG + G +
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65
Query: 897 DIKISGY------PKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQR 950
D ++ P++ R G V Q P +T E++ F L K +SK +
Sbjct: 66 DRLVASNGKLIVPPED-----RKIGMVFQTWALYPNLTAFENIAFP--LTNMK-MSKEEI 117
Query: 951 HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ VEEV +++++ + + FP LS Q++R+ +A LV +PS++ +DEP S LD
Sbjct: 118 RKRVEEVAKILDIHHVLNH---FPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 1011 AR 1012
AR
Sbjct: 173 AR 174
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 7e-12
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 47/225 (20%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYP- 904
Q+L ++S P + A G SG GK+T+ AG I I G P
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPI 66
Query: 905 ---KEQSTFARISGYVEQ-----NDIHSPQVTVEESLWFSANLRLSKE----VSKN-QRH 951
++ ++I G+V Q T+ E+L + + E V
Sbjct: 67 DNISLENWRSQI-GFVSQDSAIMAG------TIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 952 EFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
FVE + + VG G +S QR+RL IA + NP I+ +DE T+ LD+
Sbjct: 120 SFVE------NMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172
Query: 1012 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056
+ ++V + + +++ GRT + H+ S I +A D++ +++G
Sbjct: 173 ESESMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKGQ 214
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-11
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 911
L+++S PG + ++G+SG GKTTL+ LAG + G I I
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 912 RISGYVEQNDIHS--PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
R GY+ Q P +TV ++ + L K Q + +E ++ L + L
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYG--LGNGK-GRTAQERQRIEAMLELTGISELAGR 134
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+P LS Q++R +A L +P +I +DEP S LD +
Sbjct: 135 ---YPHE--LSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 2e-11
Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 32/166 (19%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKEQSTFA 911
LL+ + G +G GK+TLM +A + G+ + + +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT----------- 497
Query: 912 RISGYVEQN-DIHSPQVTVEESLWFSANLRLSKEVSKNQRH-EFVEEVMRLVELDSLRDA 969
YVE + D +V + ++ + + + + F +E M + + +L
Sbjct: 498 ---VYVEHDIDGTHSDTSVLDFVF-ESGVGTKEAIKDKLIEFGFTDE-MIAMPISAL--- 549
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
S G + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 550 ------SGG----WKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 3e-11
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 18/147 (12%)
Query: 869 ALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFARISGYVEQNDIHSP 925
++G +GAGKT ++++AG G I ++ E+ +V QN P
Sbjct: 30 VILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK----HDIAFVYQNYSLFP 85
Query: 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985
+ V+++L F +R+ K + +R V + R ++++ L D P + LS +++
Sbjct: 86 HMNVKKNLEFG--MRMKK-IKDPKR---VLDTARDLKIEHLLDR---NPLT--LSGGEQQ 134
Query: 986 RLTIAVELVANPSIIFMDEPTSGLDAR 1012
R+ +A LV NP I+ +DEP S LD R
Sbjct: 135 RVALARALVTNPKILLLDEPLSALDPR 161
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-11
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 870 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGY------PKEQSTFARISGYVEQNDI 922
L+G SG+GK+TL+ +AG G I PK+ R G V QN
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKD-----RNVGLVFQNWA 85
Query: 923 HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982
P +TV +++ F L L K + + + V EV +++ +D L + +P LS
Sbjct: 86 LYPHMTVYKNIAFP--LELRK-APREEIDKKVREVAKMLHIDKLLNR---YPWQ--LSGG 137
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1020
Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYP 904
+ +Q L+NVS G + ++G+SGAGK+TL+ + R T G + +++
Sbjct: 37 GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS 96
Query: 905 KEQSTFARIS-GYVEQ--NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
+ + T AR G + Q N + S TV ++ L L K++ V E++ LV
Sbjct: 97 ESELTKARRQIGMIFQHFNLLSS--RTVFGNVALP--LELDN-TPKDEVKRRVTELLSLV 151
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
L D+ +P S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 152 GLGDKHDS---YP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 870 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGY------PKEQSTFARISGYVEQNDI 922
L+G SG GKTT + ++AG + EG I PK+ R V Q+
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKD-----RNISMVFQSYA 93
Query: 923 HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982
P +TV E++ F L++ K K++ + V L++++ L + P LS
Sbjct: 94 VWPHMTVYENIAFP--LKIKK-FPKDEIDKRVRWAAELLQIEELLNRY---PAQ--LSGG 145
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1020
QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 870 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGY------PKEQSTFARISGYVEQNDI 922
L+G SG GKTT + +LAG G+I PK R G V QN
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKY-----REVGMVFQNYA 85
Query: 923 HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982
P +TV E++ F LR + +SK++ + V E+ R + +D+L D P LS
Sbjct: 86 LYPHMTVFENIAFP--LRARR-ISKDEVEKRVVEIARKLLIDNLLDRK---PTQ--LSGG 137
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1020
Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 138 QQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-10
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 32/180 (17%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPK 905
K+ LS+VS G ALVG SG+GK+T+ ++ T Y G I + G+
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDV 407
Query: 906 EQSTFA---RISGYVEQ-----NDIHSPQVTVEESLWFSANLRLSKE-VSKNQR----HE 952
R V Q ND T+ ++ ++A ++E + + R E
Sbjct: 408 RDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAAEGEYTREQIEQAARQAHAME 461
Query: 953 FVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
F+E + D ++G G+S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 462 FIE------NMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 6e-10
Identities = 48/210 (22%), Positives = 77/210 (36%), Gaps = 53/210 (25%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 905
Q+L ++ PG +TALVG +G+GK+T+ G+ + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPL 83
Query: 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSA----NLR--LSKEVSKNQ------- 949
Q V Q E L F N+ L++ + +
Sbjct: 84 VQYDHHYLHTQVAAVGQ-----------EPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 950 --RHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007
H+F+ D VG G+ LS QR+ + +A L+ P ++ +D TS
Sbjct: 133 SGAHDFISG------FPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATS 185
Query: 1008 GLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1036
LDA V R + + RTV+
Sbjct: 186 ALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-10
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 44/186 (23%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPK 905
P +++ L N++ G ALVG SG+GK+T+ ++ T Y EG I + G+
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDL 407
Query: 906 EQSTFA---RISGYVEQ-----NDIHSPQVTVEESLWFSANLRLSK-------EVSKNQR 950
+ T A V Q ND TV N+ ++ ++ + R
Sbjct: 408 REYTLASLRNQVALVSQNVHLFND------TVAN------NIAYARTEEYSREQIEEAAR 455
Query: 951 ----HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1006
+F+ ++D+ D ++G G LS QR+R+ IA L+ + I+ +DE T
Sbjct: 456 MAYAMDFIN------KMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEAT 508
Query: 1007 SGLDAR 1012
S LD
Sbjct: 509 SALDTE 514
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-09
Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 53/190 (27%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKI 900
+ + +L +++ G A VG SG GK+TL+ DV +G+ I I
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILI 400
Query: 901 SGYPKEQSTFA---RISGYVEQ-----NDIHSPQVTVEESLWFSANLRLSK------EVS 946
G+ + G V+Q +D TV+E N+ L + EV
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSD------TVKE------NILLGRPTATDEEVV 448
Query: 947 KNQR----HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFM 1002
+ + H+F+ L D VG G LS Q++RL+IA + NP I+ +
Sbjct: 449 EAAKMANAHDFIMN------LPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILIL 501
Query: 1003 DEPTSGLDAR 1012
DE TS LD
Sbjct: 502 DEATSALDLE 511
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 41/219 (18%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L +++ G L A+ GS+GAGKT+L+ ++ G + EG IK SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 913 ISGYVEQNDIHSPQVTVEESLW-FSANLR---LSKEVSKNQRHEFVEEVMRLVE-LDSLR 967
IS + Q + W ++ + + R+ V + +L E +
Sbjct: 101 IS-FCSQ----NS--------WIMPGTIKENIIGVSYDE-YRYRSVIKACQLEEDISKFA 146
Query: 968 DA---LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
+ ++G G + LS QR R+++A + + + +D P LD + +
Sbjct: 147 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 1025 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ +T + + ++ + D++L++ G + G
Sbjct: 206 LMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
+L D++ ++ G++ + G +GK++LL+ + G+L+ G I ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 229 TSAYISQT 236
++ SQ
Sbjct: 100 RISFCSQN 107
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-09
Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 870 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKEQSTFARISGYVE---------- 918
L+G SG GKTT + ++AG + G I I + +V
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 919 QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSG 978
Q+ P +TV +++ F L+L K V + + + V EV L+ L L + P
Sbjct: 88 QSYALYPHMTVYDNIAFP--LKLRK-VPRQEIDQRVREVAELLGLTELLNRK---PRE-- 139
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1020
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 40/219 (18%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L +++ G L A+ GS+GAGKT+L+ ++ G + EG IK SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 913 ISGYVEQNDIHSPQVTVEESLW-FSANLR---LSKEVSKNQRHEFVEEVMRLVE-LDSLR 967
IS + Q W ++ + R+ V + +L E +
Sbjct: 71 IS-FCSQ------------FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA 117
Query: 968 DA---LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
+ ++G G + LS QR R+++A + + + +D P LD + +
Sbjct: 118 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 1025 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ +T + + ++ + D++L++ G + G
Sbjct: 177 LMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 212
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
+L D++ ++ G++ + G +GK++LL+ + G+L+ G I ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 229 TSAYISQT 236
++ SQ
Sbjct: 70 RISFCSQF 77
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 34/195 (17%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 907
+ + + G + L+G++GAGKTT + +AG R G I I+ P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 908 STFARISGYVEQNDIHSPQ-------VTVEESLWFSANLRLSKEVSKNQRHEFVEEVM-- 958
P+ +TV E+L A R KE +E +
Sbjct: 78 --------INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----GIKRDLEWIFSL 125
Query: 959 --RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
RL E L G LS +++ L I L++ P ++ MDEP+ GL +
Sbjct: 126 FPRLKE---RLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 1017 VMRTVRNTVDTGRTV 1031
V ++ G T+
Sbjct: 178 VFEVIQKINQEGTTI 192
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 8e-06
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-Q 227
+ + V G++ L+G +GK+T L A+AG + + G I +NG +
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 228 RTSAYISQTDNHIPE-------LTVRE 247
I+ +PE LTV E
Sbjct: 78 INRMGIA----LVPEGRRIFPELTVYE 100
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-08
Identities = 68/276 (24%), Positives = 105/276 (38%), Gaps = 72/276 (26%)
Query: 803 EINTTSAPESGKKKGMILPFQPLAMTFHNVNY-YVDMPQAMRSQGIPEKKLQLLSNVSGV 861
E + A E + +G I F NV + Y +K + L +++
Sbjct: 339 EKDDPDAVELREVRGEI--------EFKNVWFSYD-----------KKKPV--LKDITFH 377
Query: 862 FSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGD-IKISGYPKEQ--STFA 911
PG ALVG +G+GKTT++ DV G I D I I + S+
Sbjct: 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDV-----DRGQILVDGIDIRKIKRSSLRSSI- 431
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
G V Q D TV+E NL+ E ++E +L D L
Sbjct: 432 ---GIVLQ-DTILFSTTVKE------NLKYGNP---GATDEEIKEAAKLTHSDHFIKHL- 477
Query: 972 GFPG---------SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MR 1019
P LS QR+ L I +ANP I+ +DE TS +D + + M
Sbjct: 478 --PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMW 535
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ G+T + H+ + I A D +++++ G
Sbjct: 536 KLM----EGKTSIIIAHRLNT-IKNA-DLIIVLRDG 565
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 42/201 (20%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L N+S SPG L+G +G+GK+TL+ EG+I+I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV--------SWD 85
Query: 915 GYVEQNDIHS-----PQVTVEESLWFSANLRLSKEVSKN----QRHEFVEEVMRLVELDS 965
+ PQ + FS R KN H +E+ ++ +
Sbjct: 86 S-ITLEQWRKAFGVIPQ----KVFIFSGTFR------KNLDPNAAHS-DQEIWKVADEVG 133
Query: 966 LRDALVGFP---------GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
LR + FP G LS ++ + +A +++ I+ +DEP++ LD I
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 1017 VMRTVRNTVDTGRTVVCTIHQ 1037
+ RT++ TV+ +
Sbjct: 194 IRRTLKQAF-ADCTVILCEAR 213
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 41/213 (19%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 912
L+ ++ G L A+VG G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 913 ISGYVEQNDIHSPQVTVEESLW-FSANLR---LSKEVSKNQRHEFVEEVMRLVE-LDSLR 967
++ YV Q W + +LR L + + V + L+ L+ L
Sbjct: 68 VA-YVPQ------------QAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILP 114
Query: 968 DA---LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV--R 1022
+G G + LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 115 SGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP 173
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ +T + H + D +++M G
Sbjct: 174 KGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
F R LN ++ + G + ++G GKS+LL AL ++D K G++ G
Sbjct: 11 FTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG- 66
Query: 220 KLDEFHVQRTSAYISQT 236
+ AY+ Q
Sbjct: 67 ---------SVAYVPQQ 74
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 19/159 (11%)
Query: 916 YVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG 975
+ + E+ S+ ++ ++ E V+R ++ V + G
Sbjct: 184 EELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVR--AEENKVRLFVVWEG 241
Query: 976 ----SSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+ LS +R L +A L S++ +DEPT LD ++ + +
Sbjct: 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 301
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKR-----GGRVI 1059
V+ H ++ +A D ++ + V+
Sbjct: 302 KKIPQVILVSHDE--ELKDAADHVIRISLENGSSKVEVV 338
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 54/195 (27%), Positives = 79/195 (40%), Gaps = 51/195 (26%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISG-------- 902
+L V+ V G + AL+G +GAGK+TL +LAG Y G+I + G
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSP 74
Query: 903 -------------YPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ 949
YP E + G VT+ L + +L +EV +
Sbjct: 75 DERARKGLFLAFQYPVE------VPG-----------VTIANFLRLALQAKLGREVGVAE 117
Query: 950 RHEFVEEVMRLVELDS---LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1006
V++ + L++ D R GF S G ++KR I LV P+ +DE
Sbjct: 118 FWTKVKKALELLDWDESYLSRYLNEGF--SGG----EKKRNEILQLLVLEPTYAVLDETD 171
Query: 1007 SGLDARAAAIVMRTV 1021
SGLD A +V R V
Sbjct: 172 SGLDIDALKVVARGV 186
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 50/206 (24%), Positives = 75/206 (36%), Gaps = 64/206 (31%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
IL V+ VV G + L+GP +GKSTL LAG + ++ + G I +G
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDG---------- 66
Query: 229 TSAYISQTDNHIPELTVRETFDFAARWQGANEG-FAAY--------INDLNRLEKERNIR 279
+I EL+ E R A +G F A+ + N L +
Sbjct: 67 ---------ENILELSPDE------R---ARKGLFLAFQYPVEVPGVTIANFLRLALQAK 108
Query: 280 PSPEIDA--FMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR-----GVSGGQK 332
E+ F V L++L D + G SGG+K
Sbjct: 109 LGREVGVAEFWT--KVKKA---------LELLDWD--------ESYLSRYLNEGFSGGEK 149
Query: 333 KRVTTGEMIVGPRKTLFMDEISTGLD 358
KR +++V +DE +GLD
Sbjct: 150 KRNEILQLLVLEPTYAVLDETDSGLD 175
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 4e-07
Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 51/182 (28%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYP-KE 906
LS V+ PG L A++G +G+GK+TLM D G +++ +
Sbjct: 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---------ERGRVEVDELDVRT 409
Query: 907 --QSTFARISGYVEQNDIHSPQVTVEESLWFS----ANLRLSKE----------VSKNQR 950
V PQ E++ FS NL+ +E Q
Sbjct: 410 VKLKDLRGHISAV-------PQ----ETVLFSGTIKENLKWGREDATDDEIVEAAKIAQI 458
Query: 951 HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
H+F+ L D+ V G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 459 HDFIIS------LPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Query: 1011 AR 1012
Sbjct: 512 PI 513
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-----K 905
L++L ++ G + ++G SG+GK+T + L + + EG+I I G
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDT 93
Query: 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLS-KEVSKNQRHEFVEEVMRLVELD 964
+ G V Q P +TV N+ L+ +V K R + + M L++
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHMTVLN------NITLAPMKVRKWPREKAEAKAMELLDKV 147
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
L+D +P S LS Q +R+ IA L P I+ DEPTS LD V+ ++
Sbjct: 148 GLKDKAHAYPDS--LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205
Query: 1025 VDTGRTVVCTIH 1036
+ G T+V H
Sbjct: 206 ANEGMTMVVVTH 217
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 28/160 (17%)
Query: 870 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGY------PKEQSTFARISGYVEQNDI 922
VG SG GK+TL+ ++AG +T I GD+ I P E R G V Q+
Sbjct: 34 FVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAE-----RGVGMVFQSYA 85
Query: 923 HSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTE 982
P ++V E++ F L+L+ K ++ V +V +++L L D P + LS
Sbjct: 86 LYPHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQLAHLLDRK---PKA--LSGG 137
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1020
QR+R+ I LVA PS+ +DEP S LDA R MR
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ---MRI 174
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 43/202 (21%), Positives = 90/202 (44%), Gaps = 24/202 (11%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 908
++L VS G + +++GSSG+GK+T + + + + G I + + +++
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 909 TFARISGYVEQNDIHS------------PQVTVEESLWFSANLRLS-KEVSKNQRHEFVE 955
+++ + + + +TV E N+ + +V +H+ E
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE------NVMEAPIQVLGLSKHDARE 131
Query: 956 EVMRLVELDSLRD-ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
++ + + + A +P LS Q++R++IA L P ++ DEPTS LD
Sbjct: 132 RALKYLAKVGIDERAQGKYPVH--LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 1015 AIVMRTVRNTVDTGRTVVCTIH 1036
V+R ++ + G+T+V H
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTH 211
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 55/195 (28%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISG-------- 902
+L +S PG + A++G +G+GK+TL LAGR+ Y G ++ G
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSP 91
Query: 903 -------------YPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSAN----LRLSKEV 945
YP E I G V+ + L + N R + +
Sbjct: 92 EDRAGEGIFMAFQYPVE------IPG-----------VSNQFFLQTALNAVRSYRGQETL 134
Query: 946 SKNQRHEFVEEVMRLVELDS---LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFM 1002
+ + +EE + L+++ R VGF S G ++KR I V P + +
Sbjct: 135 DRFDFQDLMEEKIALLKMPEDLLTRSVNVGF--SGG----EKKRNDILQMAVLEPELCIL 188
Query: 1003 DEPTSGLDARAAAIV 1017
DE SGLD A +V
Sbjct: 189 DESDSGLDIDALKVV 203
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 28/147 (19%)
Query: 928 TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPG----SSGLSTEQ 983
E + A K R ++ V + G + LS +
Sbjct: 14 IGELASEIFAEFTEGKYSEVVVR-----------AEENKVRLFVVWEGKERPLTFLSGGE 62
Query: 984 RKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
R L +A L S++ +DEPT LD ++ + + V+ H
Sbjct: 63 RIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 122
Query: 1038 PSIDIFEAFDELLLM-----KRGGRVI 1059
++ +A D ++ + V+
Sbjct: 123 E--ELKDAADHVIRISLENGSSKVEVV 147
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 147 RDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDS 206
+ +F+ + + F+P ++S N+ T ++ + + + A+ ++
Sbjct: 94 QGLFKDHVEDV-NFQPVKYSALTSNN-------EECTAVVARGGTANAIRIAAVDNPVNV 145
Query: 207 SLKKSGNITYNGY-KLDEFHVQRTSAYISQTDNHIPELTVR---ETFD 250
+ +I +D FH+ R + + R TFD
Sbjct: 146 NKLAQDSINIAQIVPMDGFHLSR--RCLDLFKDPQTAHKRRGSPSTFD 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1427 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-31 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-19 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-24 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-21 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-28 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-18 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-28 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-16 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-21 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-16 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-26 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-26 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-15 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-18 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-25 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-17 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-25 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-20 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-23 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-17 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-22 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-17 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-08 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.001 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 120 bits (303), Expect = 3e-31
Identities = 58/228 (25%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 846 GIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISG 902
+ E+ + L NV+ G +++G SG+GK+T+++++ + T G + +IK +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 903 YPKEQSTFARIS--GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRL 960
++ T R G+V Q P +T E++ + +S +R + E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 961 VEL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
EL + + P LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANH---KPNQ--LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 1020 TVRNTVD-TGRTVVCTIHQPSIDIFEA--FDELLLMKRGGRVIYGGKL 1064
++ + G+TVV H DI A + ++ + + G V KL
Sbjct: 187 LLKKLNEEDGKTVVVVTH----DINVARFGERIIYL-KDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 85.3 bits (211), Expect = 6e-19
Identities = 45/261 (17%), Positives = 88/261 (33%), Gaps = 48/261 (18%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYN 217
+ +K + L +V+ +K G ++GP SGKST+L + + G + +
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYID 65
Query: 218 GYKLDEF-------HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLN 270
K ++ + ++ Q N IP LT E N
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALE-----------NVELPLIFKYRG 114
Query: 271 RLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330
+ E + + E K+ L E N +SGG
Sbjct: 115 AMSGEERRKRALECL---------------------KMAEL----EERFANHKPNQLSGG 149
Query: 331 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPE 390
Q++RV + + D+ + LDS T +I++ L+ + T+++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD--IN 207
Query: 391 TFDLFDDLLLLSEGHLVYQGP 411
+ ++ L +G + +
Sbjct: 208 VARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 115 bits (289), Expect = 3e-29
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 21/211 (9%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 908
++ ++ G L+G SG GKTT + ++AG T G I + Y +
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 77
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
R V Q+ P +TV E++ F ++ + K++ + V L++++ L +
Sbjct: 78 ---RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLN 131
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1027
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 132 RYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186
Query: 1028 GRTVVCTIHQPSIDIFEAF---DELLLMKRG 1055
T + H D EA D + +M RG
Sbjct: 187 KVTTIYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 100 bits (251), Expect = 4e-24
Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 45/253 (17%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF- 224
+ T +N ++ +K G +LLGP GK+T L +AG + + G I + +
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLP 74
Query: 225 HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
R + + Q+ P +TV E F + + + E + R
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK-------------DEIDKR----- 116
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+ ++L ++ + N +SGGQ++RV IV
Sbjct: 117 -----------------VRWAAELLQIE-----ELLNRYPAQLSGGQRQRVAVARAIVVE 154
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
L MDE + LD+ + ++ ++ T + E + D + +++ G
Sbjct: 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV-THDQVEAMTMGDRIAVMNRG 213
Query: 405 HLVYQGPRAEVLE 417
L+ G EV
Sbjct: 214 QLLQIGSPTEVYL 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (286), Expect = 1e-28
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 19/225 (8%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 908
+ + L VS + G +T ++G +G+GK+TL++V+ G + G + + K +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEV----------SKNQRHEFVEEVM 958
+ Q ++TV E+L + + + E +++
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 959 RLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
++L L D G LS Q K + I L+ NP +I MDEP +G+ A +
Sbjct: 136 EFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
V G T + H+ + D L +M G++I G+
Sbjct: 191 NHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.6 bits (227), Expect = 6e-21
Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 36/256 (14%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
L+ VS V G +TL++GP SGKSTL+ + G L + G + + +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 226 ----VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
QT + E+TV E G + + + E+E +
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK-- 130
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
+L+ L L + G +SGGQ K V G +
Sbjct: 131 --------------------AFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRAL 165
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401
+ K + MDE G+ I + + T L+ + D L ++
Sbjct: 166 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLE-LKAKGITFLII-EHRLDIVLNYIDHLYVM 223
Query: 402 SEGHLVYQGPRAEVLE 417
G ++ +G E ++
Sbjct: 224 FNGQIIAEGRGEEEIK 239
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 113 bits (283), Expect = 5e-28
Identities = 44/207 (21%), Positives = 85/207 (41%), Gaps = 19/207 (9%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFP 974
+ Q P T++E++ F + E + + + + + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1034
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1035 IHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ D++L++ +G YG
Sbjct: 215 TSKME--HLRKADKILILHQGSSYFYG 239
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.7 bits (212), Expect = 1e-18
Identities = 42/249 (16%), Positives = 93/249 (37%), Gaps = 53/249 (21%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
+L +++ ++ G M + G SGK++LL+ + G+L++S G I ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG---------- 97
Query: 229 TSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFM 288
++ SQ + I T++E F + + +++ + ++ +
Sbjct: 98 RVSFCSQ-FSWIMPGTIKENIIFGVSYDE---------------YRYKSVVKACQLQQDI 141
Query: 289 KASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTL 348
TV+G + +SGGQ+ R++ +
Sbjct: 142 --------------------TKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLY 180
Query: 349 FMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVY 408
+D LD T Q+ + + + T ++ + E D +L+L +G +
Sbjct: 181 LLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTSK--MEHLRKADKILILHQGSSYF 237
Query: 409 QGPRAEVLE 417
G +E+
Sbjct: 238 YGTFSELQS 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 111 bits (280), Expect = 9e-28
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 28/229 (12%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 907
++L VS G + +++GSSG+GK+T + + + + G I I+ +
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 73
Query: 908 STFARIS-----------GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEE 956
V Q+ +TV E++ + +SK+ E +
Sbjct: 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA--PIQVLGLSKHDARERALK 131
Query: 957 VMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
+ V +D +P LS Q++R++IA L P ++ DEPTS LD
Sbjct: 132 YLAKVGIDERAQGK--YPVH--LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYGG 1062
V+R ++ + G+T+V H ++ A ++ + G++ G
Sbjct: 188 VLRIMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFL-HQGKIEEEG 231
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 78.3 bits (193), Expect = 2e-16
Identities = 42/268 (15%), Positives = 85/268 (31%), Gaps = 59/268 (22%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
+L VS + G + ++G SGKST L + S G I NG ++
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVR 70
Query: 226 ----------------VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDL 269
++ + Q N +TV E A + L
Sbjct: 71 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI----------QVLGL 120
Query: 270 NRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSG 329
++ + L +G+D +SG
Sbjct: 121 SKHDARERAL------------------------KYLAKVGID----ERAQGKYPVHLSG 152
Query: 330 GQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPP 389
GQ++RV+ + L DE ++ LD ++++ ++ + T+++ +
Sbjct: 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHE-MG 210
Query: 390 ETFDLFDDLLLLSEGHLVYQGPRAEVLE 417
+ ++ L +G + +G +V
Sbjct: 211 FARHVSSHVIFLHQGKIEEEGDPEQVFG 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 108 bits (271), Expect = 6e-27
Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 14/214 (6%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 908
K ++L +S G + L+G +GAGKTT + +++ + + G + + +E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPH 71
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
++ Y+ + + E L F A S ++ E VE + L
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIK 128
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
V S S ++L IA L+ NP + +DEPTSGLD A V + ++ G
Sbjct: 129 DRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 1029 RTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
T++ + H ++ D + L+ G ++ G
Sbjct: 184 LTILVSSHNML-EVEFLCDRIALIHN-GTIVETG 215
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 91.2 bits (226), Expect = 6e-21
Identities = 51/277 (18%), Positives = 101/277 (36%), Gaps = 55/277 (19%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG--YKLDE 223
IL +S ++ G + L+GP +GK+T L ++ + S SG +T G +
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 70
Query: 224 FHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
V++ +Y+ + + E F A + S E
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---------------------SSSSE 109
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVG 343
I+ + + ++ GL D + S G +++ ++
Sbjct: 110 IEEMV--------------ERATEIAGLG-----EKIKDRVSTYSKGMVRKLLIARALMV 150
Query: 344 PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403
+ +DE ++GLD ++ K L+ Q TIL++ E L D + L+
Sbjct: 151 NPRLAILDEPTSGLDVLNAREVRKILKQA-SQEGLTILVS-SHNMLEVEFLCDRIALIHN 208
Query: 404 GHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVT 440
G +V G E+ E +++ + + + +EV
Sbjct: 209 GTIVETGTVEELKERYKA--------QNIEEVFEEVV 237
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 107 bits (269), Expect = 1e-26
Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 20/219 (9%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 908
+ + + G + L+G++GAGKTT + +AG R G I + +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRL-VELDSLR 967
V + P++TV E+L A R KE +E + L L
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKERL 133
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
L G LS +++ L I L++ P ++ MDEP+ GL + V ++
Sbjct: 134 KQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 1028 GRTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYGGK 1063
G T++ + A +++ G+++ GK
Sbjct: 189 GTTILLVEQ----NALGALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 76.9 bits (189), Expect = 5e-16
Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 43/253 (16%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF- 224
++ + + V G++ L+G +GK+T L A+AG + + K +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 225 HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+ A + + PELTV E A + EG + + L R
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERL---- 133
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+ +SGG+++ + G ++
Sbjct: 134 ------------------------------------KQLGGTLSGGEQQMLAIGRALMSR 157
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
K L MDE S GL ++ + ++ ++Q TIL+ Q + +L G
Sbjct: 158 PKLLMMDEPSLGLAPILVSEVFEVIQK-INQEGTTILLV-EQNALGALKVAHYGYVLETG 215
Query: 405 HLVYQGPRAEVLE 417
+V +G +E+L+
Sbjct: 216 QIVLEGKASELLD 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 106 bits (265), Expect = 5e-26
Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 15/222 (6%)
Query: 846 GIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKIS 901
+ +Q L+NVS G + ++G+SGAGK+TL+ + R T G ++G +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71
Query: 902 GYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
E + R G + Q+ TV ++ L K++ V E++ LV
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLV 128
Query: 962 ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
L D+ S LS Q++R+ IA L +NP ++ DE TS LD ++ +
Sbjct: 129 GLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183
Query: 1022 RNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
++ G T++ H+ + + D + ++ G +I
Sbjct: 184 KDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQD 223
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 94.2 bits (234), Expect = 7e-22
Identities = 54/266 (20%), Positives = 98/266 (36%), Gaps = 50/266 (18%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYN 217
++F ++ LN+VS V G++ ++G +GKSTL+ + + G++ +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVD 65
Query: 218 GYKL------DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNR 271
G +L + +R I Q N + TV +
Sbjct: 66 GQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK----------- 114
Query: 272 LEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQ 331
E R +L ++GL + +SGGQ
Sbjct: 115 --DEVKRR----------------------VTELLSLVGLGD-----KHDSYPSNLSGGQ 145
Query: 332 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPET 391
K+RV + K L DE ++ LD +TT I++ L++ ++ TIL+
Sbjct: 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLI-THEMDVV 204
Query: 392 FDLFDDLLLLSEGHLVYQGPRAEVLE 417
+ D + ++S G L+ Q +EV
Sbjct: 205 KRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 105 bits (262), Expect = 9e-26
Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 28/219 (12%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KEQSTFA 911
L +SG G + LVG +GAGK+TL+ +AG +G +G I+ +G P + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
Y+ Q V L + + R E + +V + LD
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 972 GFPGSSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1025 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
G +V + H + L+K GG+++ G+
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 75.7 bits (186), Expect = 1e-15
Identities = 56/260 (21%), Positives = 89/260 (34%), Gaps = 61/260 (23%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
T L +SG V+ G + L+GP +GKSTLL +AG G+I + G L+ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 68
Query: 228 RTS---AYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+ + AY+SQ V L ++ + E+
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWH-----------------------YLTLHQHDKTRTEL 105
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV-- 342
+ V L LD +SGG+ +RV +++
Sbjct: 106 L-----------------NDVAGALALD-----DKLGRSTNQLSGGEWQRVRLAAVVLQI 143
Query: 343 -----GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397
+ L +DE LD + + K L + Q I+M+ T
Sbjct: 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA-LCQQGLAIVMS-SHDLNHTLRHAHR 201
Query: 398 LLLLSEGHLVYQGPRAEVLE 417
LL G ++ G R EVL
Sbjct: 202 AWLLKGGKMLASGRREEVLT 221
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 103 bits (259), Expect = 1e-25
Identities = 37/189 (19%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 912
+L ++ G + G +G GKTTL+ ++ ++G+I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKG 70
Query: 913 ISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
++ + I +++VE+ L A+L K + + + VE+ L+ L
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKKL-- 123
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1031
LS +R+ +A L+ N I +D+P +D + V++++ + + G +
Sbjct: 124 ----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 1032 VCTIHQPSI 1040
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 82.3 bits (203), Expect = 3e-18
Identities = 29/220 (13%), Positives = 68/220 (30%), Gaps = 48/220 (21%)
Query: 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD 222
+ +L ++ ++ G + GP GK+TLL ++ L G I YNG
Sbjct: 10 VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGV--P 64
Query: 223 EFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
V+ ++ + +++V + A G ++ L +E +
Sbjct: 65 ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKK-- 122
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
+ +S G +RV ++
Sbjct: 123 -----------------------------------------LGELSQGTIRRVQLASTLL 141
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
+ +D+ +D + +++K + + + I+
Sbjct: 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (260), Expect = 3e-25
Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 25/240 (10%)
Query: 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG 887
F NV + P +++ L N++ G ALVG SG+GK+T+ ++
Sbjct: 15 EFRNVTF-----------TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 63
Query: 888 RKTGGYIEGDIKISGYP---KEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKE 944
EG I + G+ ++ V QN + ++
Sbjct: 64 FYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ 121
Query: 945 VSKNQRHEFVEEVMRLVE-LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMD 1003
+ + R + M + +D+ D ++G G LS QR+R+ IA L+ + I+ +D
Sbjct: 122 IEEAAR---MAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILD 177
Query: 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
E TS LD + + + + RT + H+ S E DE+++++ G ++ G
Sbjct: 178 EATSALDTESERAIQAALDE-LQKNRTSLVIAHRLS--TIEQADEIVVVED-GIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 82.2 bits (203), Expect = 1e-17
Identities = 48/258 (18%), Positives = 102/258 (39%), Gaps = 39/258 (15%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
F + L +++ + G+ L+G SGKST+ + D G+I +G+
Sbjct: 21 FTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGH 77
Query: 220 KLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIR 279
L E+ + ++ V + N +A + +R + E R
Sbjct: 78 DLREYTLASLRNQVAL---------VSQNVHLFNDTVANNIAYAR-TEEYSREQIEEAAR 127
Query: 280 PSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE 339
+ F + +D +T++G + + +SGGQ++R+
Sbjct: 128 MA-YAMDF--------------------INKMDNGLDTIIGENGVL-LSGGQRQRIAIAR 165
Query: 340 MIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399
++ L +DE ++ LD+ + I L Q + T L+ + T + D+++
Sbjct: 166 ALLRDSPILILDEATSALDTESERAIQAALDE--LQKNRTSLVIAHR--LSTIEQADEIV 221
Query: 400 LLSEGHLVYQGPRAEVLE 417
++ +G +V +G +E+L
Sbjct: 222 VVEDGIIVERGTHSELLA 239
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 103 bits (258), Expect = 6e-25
Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 27/226 (11%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGD-IKISGYP 904
+ + +L +++ G A VG SG GK+TL++++ T G I D I +
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 86
Query: 905 KEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD 964
G V Q D TV+E N+ L + + ++ V E ++
Sbjct: 87 TGS--LRNQIGLV-QQDNILFSDTVKE------NILLGRPTATDEE---VVEAAKMANAH 134
Query: 965 SLRDAL-------VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
L VG G LS Q++RL+IA + NP I+ +DE TS LD + +I+
Sbjct: 135 DFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 193
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ + RT + H+ S D++++++ G ++ G
Sbjct: 194 QEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 89.5 bits (222), Expect = 3e-20
Identities = 53/260 (20%), Positives = 101/260 (38%), Gaps = 44/260 (16%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY 219
F+ + IL D++ ++ G +G GKSTL+ + D + SG I +G+
Sbjct: 24 FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGH 80
Query: 220 KLDEFHVQ--RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERN 277
+ +F R + Q DN + TV+E
Sbjct: 81 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG------------------------- 115
Query: 278 IRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTT 337
RP+ + ++A+ + ++ L +T VG ++ +SGGQK+R++
Sbjct: 116 -RPTATDEEVVEAAKMANAHD--------FIMNLPQGYDTEVGERGVK-LSGGQKQRLSI 165
Query: 338 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397
+ + L +DE ++ LD + I + L T L+ + T D
Sbjct: 166 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR--TTLIVAHR--LSTITHADK 221
Query: 398 LLLLSEGHLVYQGPRAEVLE 417
++++ GH+V G E++
Sbjct: 222 IVVIENGHIVETGTHRELIA 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 98.1 bits (244), Expect = 3e-23
Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 24/239 (10%)
Query: 828 TFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG 887
TF N+ + +L N++ G + +VG SG+GK+TL ++
Sbjct: 3 TFRNIRF-----------RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51
Query: 888 RKTGGYIEGDIKISGYP---KEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKE 944
+ + I G+ + + R G V Q+++ + ++ + + + K
Sbjct: 52 FYIPENGQ--VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV 109
Query: 945 VSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDE 1004
+ + + + L E + +VG G+ LS QR+R+ IA LV NP I+ DE
Sbjct: 110 IYAAKLAGAHDFISELREGY---NTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDE 165
Query: 1005 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
TS LD + ++MR + + GRTV+ H+ S + D +++M+ G+++ GK
Sbjct: 166 ATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 81.1 bits (200), Expect = 2e-17
Identities = 45/252 (17%), Positives = 92/252 (36%), Gaps = 46/252 (18%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGY---KLDEFH 225
IL++++ +K G + ++G SGKSTL + + + +G+ D
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---VLIDGHDLALADPNW 74
Query: 226 VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
++R + Q DN + ++ + A ++
Sbjct: 75 LRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSV-----------------------EKVI 110
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
K + + L T+VG +SGGQ++R+ +V
Sbjct: 111 YAAKLAGA-----------HDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNP 158
Query: 346 KTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405
K L DE ++ LD + I++ + T+++ + T D ++++ +G
Sbjct: 159 KILIFDEATSALDYESEHVIMRNMHKI--CKGRTVIIIAHR--LSTVKNADRIIVMEKGK 214
Query: 406 LVYQGPRAEVLE 417
+V QG E+L
Sbjct: 215 IVEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.7 bits (243), Expect = 5e-23
Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 12/219 (5%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---K 905
+ +L ++ PG +TALVG +G+GK+T+ +L G + + G P
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQY 81
Query: 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS 965
E R V Q + +++E++ + + + E + L
Sbjct: 82 EHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTME-EITAAAVKSGAHSFISGLPQ 139
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
D V GS LS QR+ + +A L+ P ++ +D+ TS LDA + V + + +
Sbjct: 140 GYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESP 198
Query: 1026 D-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ R+V+ S + E D +L ++ GG + GG
Sbjct: 199 ERYSRSVLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.7 bits (225), Expect = 1e-20
Identities = 46/259 (17%), Positives = 97/259 (37%), Gaps = 43/259 (16%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL 221
P R + +L ++ ++PG +T L+GP SGKST+ L + G + +G L
Sbjct: 22 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPL 78
Query: 222 DEF---HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI 278
++ ++ R A + Q + + +++E + + E A
Sbjct: 79 PQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSF---- 133
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG 338
+ GL +T V + +SGGQ++ V
Sbjct: 134 -----------------------------ISGLPQGYDTEVDEAGSQ-LSGGQRQAVALA 163
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398
++ L +D+ ++ LD+++ Q+ + L + ++L+ + D +
Sbjct: 164 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHI 221
Query: 399 LLLSEGHLVYQGPRAEVLE 417
L L G + G +++E
Sbjct: 222 LFLEGGAIREGGTHQQLME 240
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 94.2 bits (234), Expect = 5e-22
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTF 910
++ + +++ G VG SG GK+TL+ ++AG +T + + I +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPP 69
Query: 911 ARIS-GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDA 969
A G V Q+ P ++V E++ F L K ++ V +V +++L L D
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR 126
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1028
LS QR+R+ I LVA PS+ +DEP S LDA + + G
Sbjct: 127 KP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 1029 RTVVCTIHQPSIDIFEAF---DELLLMKRGGRVIYGGK 1063
RT++ H D EA D+++++ GRV GK
Sbjct: 182 RTMIYVTH----DQVEAMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 76.1 bits (187), Expect = 8e-16
Identities = 53/272 (19%), Positives = 101/272 (37%), Gaps = 53/272 (19%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
+ + D++ + G + +GP GKSTLL +AG + SG++ ++++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 226 VQRTS-AYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+ Q+ P L+V E F + GA ++ N R
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK-------------KEVINQR----- 110
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+ V +VL L + + + +SGGQ++RV G +V
Sbjct: 111 -----------------VNQVAEVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAE 148
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404
+DE + LD++ Q+ + ++ T++ E L D +++L G
Sbjct: 149 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAG 207
Query: 405 HLVYQGPRAEVLEFFESLGFQLPPRKGVADFL 436
+ G E+ + P + VA F+
Sbjct: 208 RVAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 93.0 bits (231), Expect = 2e-21
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 26/221 (11%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQST 909
Q+L ++S P + A G SG GK+T+ +L + T G I I E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN-- 73
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL--- 966
+ G+V Q+ E NL E + E + +V+ L S
Sbjct: 74 WRSQIGFVSQDSAIMAGTIRE-------NLTYGLE--GDYTDEDLWQVLDLAFARSFVEN 124
Query: 967 ----RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
+ VG G +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + +
Sbjct: 125 MPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 1023 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ + GRT + H+ S D++ +++ G++ GK
Sbjct: 184 S-LMKGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 78.8 bits (194), Expect = 1e-16
Identities = 50/252 (19%), Positives = 88/252 (34%), Gaps = 43/252 (17%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
IL D+S +P + GP GKST+ L + +G IT +G +D ++
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 228 RTSAYIS--QTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
+ I D+ I T+RE + +E L+ + P+
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED---LWQVLDLAFARSFVENMPD-- 127
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
T VG + +SGGQ++R+ +
Sbjct: 128 ----------------------------QLNTEVG-ERGVKISGGQRQRLAIARAFLRNP 158
Query: 346 KTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405
K L +DE + LDS + + K L + + T L+ + T D + + +G
Sbjct: 159 KILMLDEATASLDSESESMVQKALDSLMKGR--TTLVIAHR--LSTIVDADKIYFIEKGQ 214
Query: 406 LVYQGPRAEVLE 417
+ G E++
Sbjct: 215 ITGSGKHNELVA 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 90.5 bits (224), Expect = 1e-20
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 905
+ K+ L NV+ G ++G SGAGKTT M ++AG + G + D ++
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 906 EQST--FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963
+ R G V Q P +T E++ F ++SK + + VEEV +++++
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDI 130
Query: 964 DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
+ + LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 131 HHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185
Query: 1024 TV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
G T++ H P+ DIF D + ++ G+++ GK
Sbjct: 186 VQSRLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 79.7 bits (196), Expect = 6e-17
Identities = 50/261 (19%), Positives = 96/261 (36%), Gaps = 50/261 (19%)
Query: 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLD 222
K+ + L++V+ ++ G +LGP +GK+T + +AG S +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 223 EF------HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKER 276
R + QT P LT E F ++ ++R
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI----------RKR 120
Query: 277 NIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVT 336
+ V K+L + V N R +SG Q++RV
Sbjct: 121 -------------------------VEEVAKILDIH-----HVLNHFPRELSGAQQQRVA 150
Query: 337 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396
+V L +DE + LD+ ++ ++ T+L+ P + F + D
Sbjct: 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIAD 209
Query: 397 DLLLLSEGHLVYQGPRAEVLE 417
+ +L +G LV G ++ +
Sbjct: 210 RVGVLVKGKLVQVGKPEDLYD 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 88.5 bits (219), Expect = 6e-20
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 21/214 (9%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 907
++ + +S G L+G SG GKTT + ++AG + G I GD ++ K
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 908 STFARISG--YVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS 965
+ V Q+ P +TV +++ F LR +V + + + V EV L+ L
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTE 131
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
L + LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 132 LLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 1026 -DTGRTVVCTIHQPSIDIFEAF---DELLLMKRG 1055
G T + H D EA D + +M RG
Sbjct: 187 RQLGVTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 75.7 bits (186), Expect = 1e-15
Identities = 59/259 (22%), Positives = 97/259 (37%), Gaps = 51/259 (19%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF- 224
+T + ++S VK G +LLGP GK+T L +AG + S G I + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 225 ------HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI 278
R A + Q+ P +TV + F + +
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK--------------------- 110
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG 338
P EID ++ V ++LGL + N R +SGGQ++RV G
Sbjct: 111 VPRQEIDQRVRE--------------VAELLGLT-----ELLNRKPRELSGGQRQRVALG 151
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398
IV + MDE + LD+ ++ L+ Q+ T + E + D +
Sbjct: 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYV-THDQVEAMTMGDRI 210
Query: 399 LLLSEGHLVYQGPRAEVLE 417
+++ G L G EV +
Sbjct: 211 AVMNRGVLQQVGSPDEVYD 229
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 78.6 bits (193), Expect = 1e-16
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 17/211 (8%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG-YPKEQSTFARI 913
L N+S G ++G +GAGKT ++++AG I + G + S
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
+V QN P + V+++L F ++ K + + V + R ++++ L D
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRNP-- 125
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1032
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1033 CTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
H + + D + ++ G++I GK
Sbjct: 183 HITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 74.3 bits (182), Expect = 3e-15
Identities = 52/275 (18%), Positives = 99/275 (36%), Gaps = 56/275 (20%)
Query: 163 KRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNG-YKL 221
++ L+++S V+ G ++LGP +GK+ L +AG SG I +G
Sbjct: 9 RKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVT 65
Query: 222 DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
D + A++ Q + P + V++ +F R + + +R +
Sbjct: 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK-------------DPKRVLD-- 110
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
+ L ++ + +SGG+++RV +
Sbjct: 111 -----------------------TARDLKIEHL-----LDRNPLTLSGGEQQRVALARAL 142
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401
V K L +DE + LD T + L + T+L E + D + ++
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVV 201
Query: 402 SEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFL 436
+G L+ G E+ F+ P VA F+
Sbjct: 202 MDGKLIQVGKPEEI--------FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 75.0 bits (184), Expect = 2e-15
Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFARISGYVEQN 920
L+G +GAGK+ ++++AG + G + I+ P E+ R G+V Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 921 DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980
P ++V ++ + V + +R V E+ + + L D + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLS 128
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1039
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1040 IDIFEAFDELLLMKRGGRVIYGGK 1063
+ DE+ +M GR++ GK
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 66.2 bits (161), Expect = 3e-12
Identities = 51/266 (19%), Positives = 90/266 (33%), Gaps = 57/266 (21%)
Query: 172 DVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTS- 230
+V +LLGP +GKS L +AG + G + NG + +R
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGI 72
Query: 231 AYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKA 290
++ Q P L+V + R ER+ R
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVE---------------RVERDRR----------- 106
Query: 291 SSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFM 350
V ++ + + + +SGG+++RV +V + L +
Sbjct: 107 --------------VREMAEKLGIAH--LLDRKPARLSGGERQRVALARALVIQPRLLLL 150
Query: 351 DEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQG 410
DE + +D T +++ LR + D IL E L D++ ++ G +V +G
Sbjct: 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVEKG 209
Query: 411 PRAEVLEFFESLGFQLPPRKGVADFL 436
E+ VA+FL
Sbjct: 210 KLKELFS---------AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 51.5 bits (122), Expect = 9e-08
Identities = 24/191 (12%), Positives = 41/191 (21%), Gaps = 36/191 (18%)
Query: 869 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVT 928
+ G G GKTTL+ + R R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 929 VEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLT 988
++ ++ S K V + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 989 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1048
+I +DE + D VV TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1049 LLLMKRGGRVI 1059
+ + G +I
Sbjct: 149 IRRLP-GAVLI 158
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 184 LLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPEL 243
++ G P GK+TL+ + +L K++ + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG---KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 244 TVRETFDFAARWQGANE 260
+ T G N
Sbjct: 61 SKFFTSKKLVGSYGVNV 77
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 39.2 bits (90), Expect = 0.001
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 10/90 (11%)
Query: 180 GRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNH 239
RM +L G ++GKS ++ L L + Q+
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLP----------EPWLAFGVDSLIEAMPLKMQSAEG 52
Query: 240 IPELTVRETFDFAARWQGANEGFAAYINDL 269
E ++ +A + +
Sbjct: 53 GIEFDADGGVSIGPEFRALEGAWAEGVVAM 82
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1427 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.81 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.56 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.45 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.32 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.13 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.1 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.9 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.83 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.71 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 98.01 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.93 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.92 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.9 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.79 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.76 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.76 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.54 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.42 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.4 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.34 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.25 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.1 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.08 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.04 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.98 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.97 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.91 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.91 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.91 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.86 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.83 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.82 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.82 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.82 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.79 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.76 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.75 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.71 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.7 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.67 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.63 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.63 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.62 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.61 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.6 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.59 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.54 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.53 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.52 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.51 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.48 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.46 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.45 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.44 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.44 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.43 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.42 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.41 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.37 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.35 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.31 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.28 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.27 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.27 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.21 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.2 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.19 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.18 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.16 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.16 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.14 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.14 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.12 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.11 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.09 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.06 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.05 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.04 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.04 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.03 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.02 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.02 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.01 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.0 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.0 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.0 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.99 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.99 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.99 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.98 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.96 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.92 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.9 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.9 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.89 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.89 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.88 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.87 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.87 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.86 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.85 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.85 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.85 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.84 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.84 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.83 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.81 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.78 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.77 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.76 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.74 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.74 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.74 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.72 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.71 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.71 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.71 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.69 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.67 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.67 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.66 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.64 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.63 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.63 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.61 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.61 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.6 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.6 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.59 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.59 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.58 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.56 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.56 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.55 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.54 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.51 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.49 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.49 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.48 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.44 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.43 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.4 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.4 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.4 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.37 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.37 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.36 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.36 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.34 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.3 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.27 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.26 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.2 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.19 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.17 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.17 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.1 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.1 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.08 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.08 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.07 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.06 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.06 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.03 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.01 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.99 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.99 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.93 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.87 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.86 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.85 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.85 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.81 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.79 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.79 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.75 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.73 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.71 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.69 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.69 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.65 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.63 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.6 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.6 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.59 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.54 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.54 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.53 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.51 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.47 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.46 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.45 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.45 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.44 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.44 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.43 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.42 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.4 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.39 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.36 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.36 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.35 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.35 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.32 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.3 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.29 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.24 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.23 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.21 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.2 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.1 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.08 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.07 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.07 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.05 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.04 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.03 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.03 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.02 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.99 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.97 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.96 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.96 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.96 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.95 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.94 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.9 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.88 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.87 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.87 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.86 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.85 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.84 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.83 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.78 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.78 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.73 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.69 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.66 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.65 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.63 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.58 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.55 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.54 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.54 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.49 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.48 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.45 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.43 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.37 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.37 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.37 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.35 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.35 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.34 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.26 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.26 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.24 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.23 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.22 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.21 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.19 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.18 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.16 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.15 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.15 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.13 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.11 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.11 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.97 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.96 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.89 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.89 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.87 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.83 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.8 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.78 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.73 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.73 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.72 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.67 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.67 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 92.63 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.62 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.61 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.61 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.6 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.59 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.57 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.54 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.54 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.52 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.42 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.38 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.36 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.34 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.34 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.28 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.23 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.21 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.21 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.2 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.18 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.13 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.13 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.08 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.07 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.06 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.04 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.04 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.03 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.99 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.96 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.95 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.93 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.93 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.91 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.86 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.79 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.77 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.76 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.75 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.74 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.73 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.68 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.66 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.66 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.66 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.62 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.6 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.54 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.54 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.52 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.5 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.45 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.43 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.42 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.41 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.39 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.37 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.36 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.3 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.3 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.29 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.26 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.24 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.13 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.04 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.02 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.96 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.88 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.86 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.86 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.82 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.81 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.81 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.76 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.75 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.75 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.69 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.65 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.5 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.48 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.45 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.4 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.37 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.33 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.33 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.11 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.08 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.03 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.01 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.99 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 89.86 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.8 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.76 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.72 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.66 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.6 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.52 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.49 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.46 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.4 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.29 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.26 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.26 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.21 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.02 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.91 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.8 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 88.71 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 88.69 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.42 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.35 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.09 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.08 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.05 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 88.03 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.02 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.99 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.98 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 87.95 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.92 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.69 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.69 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.47 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.74 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 86.74 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.71 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.47 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 86.31 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.25 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.16 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 85.55 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.47 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.29 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.21 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.16 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.0 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 84.79 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 84.68 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.48 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 84.29 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.22 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 84.04 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.9 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 83.79 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.18 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 83.13 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 82.6 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.45 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 81.43 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.32 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.12 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=325.93 Aligned_cols=206 Identities=26% Similarity=0.360 Sum_probs=124.6
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC-------CCCEEEEECCCCCC
Q ss_conf 10111716789587599997599997899999994798999982019999886168433-------33428997268888
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH-------VQRTSAYISQTDNH 239 (1427)
Q Consensus 167 ~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~-------~~~~~aYV~Q~D~~ 239 (1427)
.++|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++.... .++.++||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHH
T ss_conf 99985606688699899999999980999999996487889---898999999803566444245322551200221222
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999830887332457544327888412799902899986410278754431899999929965446422
Q 000555 240 IPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVV 319 (1427)
Q Consensus 240 ~~~lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~V 319 (1427)
++.+||+||+.|+.+.++.+. .| .+.+++++++.+||.+.+|..+
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~-----------~e------------------------~~~~v~~~l~~~~l~~~~~~~p 137 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR-----------QE------------------------IDQRVREVAELLGLTELLNRKP 137 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH-----------HH------------------------HHHHHHHHHHHHTCGGGTTCCG
T ss_pred CCHHHHHHHHHHHHHHCCCCH-----------HH------------------------HHHHHHHHHHHCCCHHHHCCCH
T ss_conf 310116676330687729998-----------99------------------------9999999998759966762993
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 46457888967868999999980899487986799899989799999999999870896899993379515772117099
Q 000555 320 GNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 320 G~~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~Ii 399 (1427)
+ .|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..+.|+|++.| -..++..++|+|+
T Consensus 138 ~-----~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-d~~~~~~~~drv~ 211 (240)
T d1g2912 138 R-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH-DQVEAMTMGDRIA 211 (240)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEE
T ss_pred H-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEE
T ss_conf 3-----499999999999999826998898258876569899989999999998636988999959-9999999699999
Q ss_pred EEECCEEEEECCHHHHH
Q ss_conf 97088389852967899
Q 000555 400 LLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 400 lL~~G~ivy~Gp~~~~~ 416 (1427)
+|.+|++++.|+++++.
T Consensus 212 vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 212 VMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEECCHHHHH
T ss_conf 99899999985999998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=324.00 Aligned_cols=214 Identities=26% Similarity=0.344 Sum_probs=189.4
Q ss_pred EEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 37983114698275100013888434301024056884883999976899993578840418977862698999979137
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++.++. +..+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CCC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 822-------2232388871588889999999999999851288679987799999999999399643334234899988
Q 000555 906 EQS-------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSG 978 (1427)
Q Consensus 906 ~~~-------~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 978 (1427)
... ..++.+|||+|++.++|.+||+|++.+...++ ..+.++..++++++++.++|.+.+|... ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 356644424532255120022122231011667633068772---9998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 9988888899999986199788981999999999999999999998858-989999955888889974165889916919
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 979 lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~ 1057 (1427)
||||||||++||++|+.+|++|+|||||+|||+.+...+++.++++.++ |.|||+++|++. ++...+|++++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999999989-99
Q ss_pred EEECCCC
Q ss_conf 9990578
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~G~~ 1064 (1427)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=331.42 Aligned_cols=207 Identities=23% Similarity=0.385 Sum_probs=142.9
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf 101117167895875999975999978999999947989999820199998861684333-3428997268888999999
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-QRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~-~~~~aYV~Q~D~~~~~lTV 245 (1427)
.++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+..+ +|.++||+|++.+++.+||
T Consensus 13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHH
T ss_conf 99981117788699899999899982999999996587888---888999999778886444322234334202643337
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999830887332457544327888412799902899986410278754431899999929965446422464578
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 rEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~~~r 325 (1427)
+||+.|+.++++.+. .+.+.+++.+++.++|.+..|..++
T Consensus 90 ~eni~~~~~~~~~~~-----------------------------------~~~~~~v~~~l~~~~l~~~~~~~~~----- 129 (232)
T d2awna2 90 AENMSFGLKLAGAKK-----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK----- 129 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHCCCCH-----------------------------------HHHHHHHHHHHHHCCCHHHHHCCHH-----
T ss_conf 889789998759988-----------------------------------9999999999975788656648965-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEECCE
Q ss_conf 88967868999999980899487986799899989799999999999870896899993379515772117099970883
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 gLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~~G~ 405 (1427)
.|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..++|+|++.| -..++..++|+|++|.+|+
T Consensus 130 ~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES-CHHHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEEEEECCE
T ss_conf 699999999999999703998899758887889889989999999998742987999948-9999999699999997999
Q ss_pred EEEECCHHHHHH
Q ss_conf 898529678999
Q 000555 406 LVYQGPRAEVLE 417 (1427)
Q Consensus 406 ivy~Gp~~~~~~ 417 (1427)
++.+|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEECHHHHHH
T ss_conf 999808999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=327.50 Aligned_cols=206 Identities=23% Similarity=0.357 Sum_probs=121.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf 101117167895875999975999978999999947989999820199998861684333-3428997268888999999
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-QRTSAYISQTDNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~-~~~~aYV~Q~D~~~~~lTV 245 (1427)
..+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++....+ +|.++||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHH
T ss_conf 99981306788799899999999982999999997589998---787999164135477000158998003353422209
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999830887332457544327888412799902899986410278754431899999929965446422464578
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIR 325 (1427)
Q Consensus 246 rEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~~~r 325 (1427)
+||+.|..+.++.++ .| .+.+++.+++.+||++.+|.. ..
T Consensus 96 ~enl~~~~~~~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 135 (239)
T d1v43a3 96 YENIAFPLKIKKFPK-----------DE------------------------IDKRVRWAAELLQIEELLNRY-----PA 135 (239)
T ss_dssp HHHHHTTCC--CCCH-----------HH------------------------HHHHHHHHHHHTTCGGGTTSC-----TT
T ss_pred HHHHHHHHHHCCCCH-----------HH------------------------HHHHHHHHHHHCCCHHHHCCC-----HH
T ss_conf 999999998739999-----------99------------------------999999999875985566099-----54
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEECCE
Q ss_conf 88967868999999980899487986799899989799999999999870896899993379515772117099970883
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 gLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~~G~ 405 (1427)
.|||||||||+||++|+.+|++++|||||+|||+.++.+|++.++++.+..+.|++++.|. ..++..++|+|++|.+|+
T Consensus 136 ~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~ 214 (239)
T d1v43a3 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQ 214 (239)
T ss_dssp TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCE
T ss_conf 6999998899997664049982430688666898999899999999987319807999489-999998699999998999
Q ss_pred EEEECCHHHHH
Q ss_conf 89852967899
Q 000555 406 LVYQGPRAEVL 416 (1427)
Q Consensus 406 ivy~Gp~~~~~ 416 (1427)
++.+|+++++.
T Consensus 215 iv~~G~~~el~ 225 (239)
T d1v43a3 215 LLQIGSPTEVY 225 (239)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
T ss_conf 99985999998
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=329.77 Aligned_cols=213 Identities=28% Similarity=0.403 Sum_probs=187.9
Q ss_pred EEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 79831146982751000138884343010240568848839999768999935788404189778626989999791378
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|++.+++ ..++|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 2-222323888715888899999999999998512886799877999999999993996433342348999889988888
Q 000555 907 Q-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 907 ~-~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrk 985 (1427)
. ...+|.+|||+|++.++|.+||+|++.|...++ ..+.++.+++++++++.++|.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHH
T ss_conf 88644432223433420264333788978999875---9988999999999997578865664896-----569999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCCC
Q ss_conf 89999998619978898199999999999999999999885-89899999558888899741658899169199990578
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 986 rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~~ 1064 (1427)
|++||++|+.+|++++|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++...+|++++|.+ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999999979-999998089
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=330.17 Aligned_cols=214 Identities=23% Similarity=0.356 Sum_probs=190.6
Q ss_pred EEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 37983114698275100013888434301024056884883999976899993578840418977862698999979137
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++.+++ +..+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 82-22232388871588889999999999999851288679987799999999999399643334234899988998888
Q 000555 906 EQ-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984 (1427)
Q Consensus 906 ~~-~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqr 984 (1427)
.. ...+|.+|||+|+..++|.+||+|++.|...++ ..+.++..++++++++.++|.+.+|..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCC
Q ss_conf 8899999986199788981999999999999999999998858-989999955888889974165889916919999057
Q 000555 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 985 krl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~ 1063 (1427)
||++||++|+.+|+||+|||||+|||+.++..+++.++++.++ |.|||+++|++. +....+|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 8
Q 000555 1064 L 1064 (1427)
Q Consensus 1064 ~ 1064 (1427)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=326.58 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=123.5
Q ss_pred EEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 79831146982751000138884343010240568848839999768999935788404189778626989999791378
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|++.++... ....++|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 7998279996999---------814898615057886997999989998988899998758863--66773288676852
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2------2223238887158888999999999999985128867998779999999999939964333423489998899
Q 000555 907 Q------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980 (1427)
Q Consensus 907 ~------~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lS 980 (1427)
. ..+++.+|||+|+..++|.+||+|++.+...++ ..+.++.+++++++++.++|.+..|... ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCC
T ss_conf 0875551155416643022522279964999999999984---9998999999999999769903554894-----3499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEE
Q ss_conf 88888899999986199788981999999999999999999998858-98999995588888997416588991691999
Q 000555 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 981 gGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~ 1059 (1427)
||||||++||++|+.+|++|++||||+|||+.++..|++.++++.++ |.|||+++|++. ++...+|++++|.+ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred ECCCC
Q ss_conf 90578
Q 000555 1060 YGGKL 1064 (1427)
Q Consensus 1060 ~~G~~ 1064 (1427)
..|++
T Consensus 221 ~~G~~ 225 (240)
T d3dhwc1 221 EQDTV 225 (240)
T ss_dssp EEEET
T ss_pred EECCH
T ss_conf 98799
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=324.66 Aligned_cols=203 Identities=23% Similarity=0.340 Sum_probs=174.1
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCCHH
Q ss_conf 01117167895875999975999978999999947989999820199998861684333-34289972688889999999
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-QRTSAYISQTDNHIPELTVR 246 (1427)
Q Consensus 168 ~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~-~~~~aYV~Q~D~~~~~lTVr 246 (1427)
.+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..+ ++.++||+|++.+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHH
T ss_conf 7884337898799899999899982999999996476888---7889995673465216574056151211117466577
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999998308873324575443278884127999028999864102787544318999999299654464224645788
Q 000555 247 ETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG 326 (1427)
Q Consensus 247 EtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~~~rg 326 (1427)
||+.|+.+.++... ..+++.+++.++|.+-.|..++ .
T Consensus 91 enl~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~ 127 (229)
T d3d31a2 91 KNLEFGMRMKKIKD--------------------------------------PKRVLDTARDLKIEHLLDRNPL-----T 127 (229)
T ss_dssp HHHHHHHHHHCCCC--------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----G
T ss_pred HHHHHHHHHCCCCH--------------------------------------HHHHHHHHHHHCCHHHHHCCHH-----H
T ss_conf 88888776405538--------------------------------------9999999998256555758955-----4
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEECCEE
Q ss_conf 89678689999999808994879867998999897999999999998708968999933795157721170999708838
Q 000555 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHL 406 (1427)
Q Consensus 327 LSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~~G~i 406 (1427)
|||||||||+|||+|+.+|++++|||||+|||+.+..+|++.|+++.+..+.|++++.| -..++.+++|+|++|.+|++
T Consensus 128 LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH-d~~~~~~~~drv~vm~~G~i 206 (229)
T d3d31a2 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH-DQTEARIMADRIAVVMDGKL 206 (229)
T ss_dssp SCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES-CHHHHHHHCSEEEEESSSCE
T ss_pred CCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEEEEECCEE
T ss_conf 79998401403043443677144347876799899999999999998647968999749-99999996999999979999
Q ss_pred EEECCHHHHHH
Q ss_conf 98529678999
Q 000555 407 VYQGPRAEVLE 417 (1427)
Q Consensus 407 vy~Gp~~~~~~ 417 (1427)
+.+|+++++.+
T Consensus 207 v~~g~~~el~~ 217 (229)
T d3d31a2 207 IQVGKPEEIFE 217 (229)
T ss_dssp EEEECHHHHHS
T ss_pred EEECCHHHHHH
T ss_conf 99869999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=322.35 Aligned_cols=209 Identities=22% Similarity=0.336 Sum_probs=169.9
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC---CCCEEEEECCCCCCCCC
Q ss_conf 310111716789587599997599997899999994798999982019999886168433---33428997268888999
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 166 ~~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~---~~~~~aYV~Q~D~~~~~ 242 (1427)
...+|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+.. .++.++||+|++ ++++
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDN-VLLN 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCTT
T ss_pred CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCC-CCCC
T ss_conf 960374248998499999999999998999999997357888---889999999944002465535288982446-5578
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999999830887332457544327888412799902899986410278754431899999929965446422464
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~ 322 (1427)
.||+|||.|+..... . .++....+.+. ... ..-.++...+|.+|..
T Consensus 91 ~Ti~eNi~~~~~~~~----~-------------------~~~~~~~~~~~---------~~~--~i~~~~~~~~t~i~~~ 136 (241)
T d2pmka1 91 RSIIDNISLANPGMS----V-------------------EKVIYAAKLAG---------AHD--FISELREGYNTIVGEQ 136 (241)
T ss_dssp SBHHHHHCTTSTTCC----H-------------------HHHHHHHHHHT---------CHH--HHTTSTTGGGSBCSTT
T ss_pred CCCCCCCCCCCCCCC----H-------------------HHHHHHHHHHH---------HHH--HHHHHHCCHHHHCCCC
T ss_conf 400035223575543----8-------------------88999999975---------578--8876320134432787
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEE
Q ss_conf 57888967868999999980899487986799899989799999999999870896899993379515772117099970
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~ 402 (1427)
+. .|||||||||+|||+++.+|++++||||||+||+.++.+|++.|+++.+ ++|+|+..|++ +....+|+|++|+
T Consensus 137 g~-~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~ 211 (241)
T d2pmka1 137 GA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRL--STVKNADRIIVME 211 (241)
T ss_dssp TT-CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSG--GGGTTSSEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEE
T ss_conf 88-6698898987544344416513556477655598999999999999858--99899997889--9998499999998
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 883898529678999
Q 000555 403 EGHLVYQGPRAEVLE 417 (1427)
Q Consensus 403 ~G~ivy~Gp~~~~~~ 417 (1427)
+|+++.+|++++++.
T Consensus 212 ~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 212 KGKIVEQGKHKELLS 226 (241)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHH
T ss_conf 999999889999982
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=328.68 Aligned_cols=206 Identities=22% Similarity=0.308 Sum_probs=115.2
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC------CCCEEEEECCCCCCC
Q ss_conf 10111716789587599997599997899999994798999982019999886168433------334289972688889
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTDNHI 240 (1427)
Q Consensus 167 ~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~------~~~~~aYV~Q~D~~~ 240 (1427)
..+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .+|.++||+|+..++
T Consensus 18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~ 94 (242)
T d1oxxk2 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94 (242)
T ss_dssp EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCC
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCC
T ss_conf 89980407898799899999899980999999997586888---745999999951373111531204514773043346
Q ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999998308873324575443278884127999028999864102787544318999999299654464224
Q 000555 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVG 320 (1427)
Q Consensus 241 ~~lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG 320 (1427)
+.+||+||+.|+.+.++.+. .+ .+.+++.+++.+||++..|..++
T Consensus 95 p~ltv~eni~~~l~~~~~~~-----------~~------------------------~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 95 PNLTAFENIAFPLTNMKMSK-----------EE------------------------IRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp TTSCHHHHHHGGGTTSSCCH-----------HH------------------------HHHHHHHHHHHTTCGGGTTSCGG
T ss_pred CCCCHHHHHHHHHHHHCCCH-----------HH------------------------HHHHHHHHHHHCCHHHHHHCCHH
T ss_conf 66657777665567613799-----------99------------------------99999999866591766648954
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEE
Q ss_conf 64578889678689999999808994879867998999897999999999998708968999933795157721170999
Q 000555 321 NDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 321 ~~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~Iil 400 (1427)
.|||||||||+|||+|+.+|+++++||||+|||+.++.++++.|+++.+..+.|+|++.|. ..++.+++|+|++
T Consensus 140 -----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd-~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 -----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGV 213 (242)
T ss_dssp -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred -----HCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHCCEEEE
T ss_conf -----5999998589987577604661454478667998998899899999986359879999799-9999996999999
Q ss_pred EECCEEEEECCHHHHH
Q ss_conf 7088389852967899
Q 000555 401 LSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 401 L~~G~ivy~Gp~~~~~ 416 (1427)
|.+|+++..|+++++.
T Consensus 214 m~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLY 229 (242)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
T ss_conf 9899999986999998
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=319.40 Aligned_cols=219 Identities=25% Similarity=0.392 Sum_probs=161.5
Q ss_pred EEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 79831146982751000138884343010240568848839999768999935788404189778626989999791378
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++|++.+++.. .....+|+|||+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 8999079994899---------820898713377884997999988999982165575068877--77662699999857
Q ss_pred CC------CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 22------22-3238887158888999999999999985128867998779999999999939964-3334234899988
Q 000555 907 QS------TF-ARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-LRDALVGFPGSSG 978 (1427)
Q Consensus 907 ~~------~~-~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~ 978 (1427)
.. .+ ++.+|||+|+..++|.+||+|++.+...++.....+.+++.+.+.+.++.++|.+ .++..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 9988888899999986199788981999999999999999999998858-989999955888889974165889916919
Q 000555 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGR 1057 (1427)
Q Consensus 979 lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~ 1057 (1427)
||||||||++|||+|+.+|++|++||||+|||+.++..|++.++++.++ |.|||+++|++ +....+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEEC-CE
T ss_conf 8999999999875652278889946876546989999999999999984399999987888--99986998999989-99
Q ss_pred EEECCCC
Q ss_conf 9990578
Q 000555 1058 VIYGGKL 1064 (1427)
Q Consensus 1058 ~~~~G~~ 1064 (1427)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=322.96 Aligned_cols=216 Identities=20% Similarity=0.363 Sum_probs=173.8
Q ss_pred CCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC---CCCEEEEECCCCC
Q ss_conf 7654310111716789587599997599997899999994798999982019999886168433---3342899726888
Q 000555 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDN 238 (1427)
Q Consensus 162 ~~~~~~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~---~~~~~aYV~Q~D~ 238 (1427)
+.++...+|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+.. .++.++||+|++.
T Consensus 22 ~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 98 (251)
T d1jj7a_ 22 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQ 98 (251)
T ss_dssp TTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCC
T ss_pred CCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCC
T ss_conf 9999997674438998499899999999984999999986143787---6899889985311013788877654045650
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 89999999999999983088733245754432788841279990289998641027875443189999992996544642
Q 000555 239 HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETV 318 (1427)
Q Consensus 239 ~~~~lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~ 318 (1427)
+++.||+||+.|+...... . .+.....+. ....-....|++..+|.
T Consensus 99 -lf~~tv~eni~~g~~~~~~----~---~~~~~~~~~--------------------------~~~~~~i~~l~~g~~~~ 144 (251)
T d1jj7a_ 99 -VFGRSLQENIAYGLTQKPT----M---EEITAAAVK--------------------------SGAHSFISGLPQGYDTE 144 (251)
T ss_dssp -CCSSBHHHHHHCSCSSCCC----H---HHHHHHHHH--------------------------HTCHHHHHTSTTGGGCB
T ss_pred -CCCCCHHHHHHHHHCCCCH----H---HHHHHHHHH--------------------------HHHHHHHHHCCCCCHHH
T ss_conf -0276346554542101302----7---889999999--------------------------98999998561211136
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCE
Q ss_conf 24645788896786899999998089948798679989998979999999999987089689999337951577211709
Q 000555 319 VGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 319 VG~~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~I 398 (1427)
+++.+. .|||||||||+|||+++.+|++++||||||+||+.++.+|++.|+++.+..++|+++..|.. +....+|+|
T Consensus 145 i~~~~~-~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI 221 (251)
T d1jj7a_ 145 VDEAGS-QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHI 221 (251)
T ss_dssp CCSSCS-SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEE
T ss_pred HHCCCC-CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEE
T ss_conf 751676-68954704899860445687078716757656853689999999997650698999995979--999859999
Q ss_pred EEEECCEEEEECCHHHHHH
Q ss_conf 9970883898529678999
Q 000555 399 LLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 399 ilL~~G~ivy~Gp~~~~~~ 417 (1427)
++|.+|+++.+|+++++++
T Consensus 222 ~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 222 LFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHH
T ss_conf 9998999999889999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=324.35 Aligned_cols=216 Identities=29% Similarity=0.406 Sum_probs=189.7
Q ss_pred EEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 37983114698275100013888434301024056884883999976899993578840418977862698999979137
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++.+|++++++ ..+..+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEEC-----------CCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 899975799988-----------999899804078987998999998999809999999975868--8874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 82------222323888715888899999999999998512886799877999999999993996433342348999889
Q 000555 906 EQ------STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGL 979 (1427)
Q Consensus 906 ~~------~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~l 979 (1427)
.. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|++..|... ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHC
T ss_conf 13731115312045147730433466665777766556761---3799999999999986659176664895-----459
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEE
Q ss_conf 988888899999986199788981999999999999999999998858-9899999558888899741658899169199
Q 000555 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058 (1427)
Q Consensus 980 SgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~ 1058 (1427)
|||||||++|||+|+.+|++|++||||+|||+.+...+++.++++.++ |.|+|+++|++. ++.+.+|++++|.+ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EECCCC
Q ss_conf 990578
Q 000555 1059 IYGGKL 1064 (1427)
Q Consensus 1059 ~~~G~~ 1064 (1427)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=322.21 Aligned_cols=209 Identities=24% Similarity=0.335 Sum_probs=182.0
Q ss_pred CCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC------CCCEEEEECCCC
Q ss_conf 54310111716789587599997599997899999994798999982019999886168433------334289972688
Q 000555 164 RHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH------VQRTSAYISQTD 237 (1427)
Q Consensus 164 ~~~~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~------~~~~~aYV~Q~D 237 (1427)
+....+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++||+|+.
T Consensus 15 ~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~ 91 (240)
T d3dhwc1 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91 (240)
T ss_dssp SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSC
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 81489861505788699799998999898889999875886366---773288676852087555115541664302252
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 88999999999999998308873324575443278884127999028999864102787544318999999299654464
Q 000555 238 NHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSET 317 (1427)
Q Consensus 238 ~~~~~lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT 317 (1427)
.+++.+||+||+.|+.+..+.+. ++...+++.+++.+||++-+|.
T Consensus 92 ~l~~~~tv~eni~~~l~~~~~~~-----------------------------------~~~~~~v~~~L~~vgL~~~~~~ 136 (240)
T d3dhwc1 92 NLLSSRTVFGNVALPLELDNTPK-----------------------------------DEVKRRVTELLSLVGLGDKHDS 136 (240)
T ss_dssp CCCTTSBHHHHHHHHHHTTTCCT-----------------------------------THHHHHHHHHHHHHSTTTTTSS
T ss_pred CCCCCCCHHHHHHHHHHHCCCCH-----------------------------------HHHHHHHHHHHHHCCCCHHHHC
T ss_conf 22799649999999999849998-----------------------------------9999999999997699035548
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCC
Q ss_conf 22464578889678689999999808994879867998999897999999999998708968999933795157721170
Q 000555 318 VVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 318 ~VG~~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~ 397 (1427)
.+ +.|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+.|+++..| ...++..++|+
T Consensus 137 ~~-----~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-dl~~~~~~~dr 210 (240)
T d3dhwc1 137 YP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH-EMDVVKRICDC 210 (240)
T ss_dssp CB-----SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBS-CHHHHHHHCSE
T ss_pred CH-----HHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCE
T ss_conf 94-----3499999989998640105898687446556589888567999999998646978999838-99999986999
Q ss_pred EEEEECCEEEEECCHHHHH
Q ss_conf 9997088389852967899
Q 000555 398 LLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 398 IilL~~G~ivy~Gp~~~~~ 416 (1427)
|++|.+|++++.|+++++.
T Consensus 211 i~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 211 VAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp EEEEETTEEEEEEETTTTT
T ss_pred EEEEECCEEEEECCHHHHH
T ss_conf 9999799999987999997
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=315.76 Aligned_cols=207 Identities=20% Similarity=0.289 Sum_probs=174.2
Q ss_pred CCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-------CCEEEEECCC
Q ss_conf 543101117167895875999975999978999999947989999820199998861684333-------3428997268
Q 000555 164 RHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-------QRTSAYISQT 236 (1427)
Q Consensus 164 ~~~~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~-------~~~~aYV~Q~ 236 (1427)
+....+|+|+|+.+++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++||.|+
T Consensus 15 ~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~ 91 (230)
T d1l2ta_ 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91 (230)
T ss_dssp TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTT
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECC
T ss_conf 82089871337788499799998899998216557506887777---662699999857688555123125557788041
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-CC
Q ss_conf 88899999999999999830887332457544327888412799902899986410278754431899999929965-44
Q 000555 237 DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDL-CS 315 (1427)
Q Consensus 237 D~~~~~lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~-~~ 315 (1427)
+.+++.+||+||+.|+...+.... .+..+ ...++...++.+||.+ .+
T Consensus 92 ~~l~~~~tv~eni~~~~~~~~~~~--------~~~~~------------------------~~~~~~~~l~~~~L~~~~~ 139 (230)
T d1l2ta_ 92 FNLIPLLTALENVELPLIFKYRGA--------MSGEE------------------------RRKRALECLKMAELEERFA 139 (230)
T ss_dssp CCCCTTSCHHHHHHHHHHTCCSSC--------CCHHH------------------------HHHHHHHHHHHTTCCGGGT
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCC--------CCHHH------------------------HHHHHHHHHHHHCHHHHHH
T ss_conf 241768668887757888722478--------99999------------------------9999999887624234553
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHC
Q ss_conf 64224645788896786899999998089948798679989998979999999999987089689999337951577211
Q 000555 316 ETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLF 395 (1427)
Q Consensus 316 dT~VG~~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lf 395 (1427)
+..+ ..|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..++|+|++.|.+ +..+.+
T Consensus 140 ~~~p-----~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~ 212 (230)
T d1l2ta_ 140 NHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFG 212 (230)
T ss_dssp TCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTS
T ss_pred CCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHC
T ss_conf 4880-----238999999999875652278889946876546989999999999999984399999987888--999869
Q ss_pred CCEEEEECCEEEEECCH
Q ss_conf 70999708838985296
Q 000555 396 DDLLLLSEGHLVYQGPR 412 (1427)
Q Consensus 396 D~IilL~~G~ivy~Gp~ 412 (1427)
|+|++|.+|+++..|+.
T Consensus 213 drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 213 ERIIYLKDGEVEREEKL 229 (230)
T ss_dssp SEEEEEETTEEEEEEEC
T ss_pred CEEEEEECCEEEEECCC
T ss_conf 98999989999995257
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=318.57 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=165.7
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC---CCCEEEEECCCCCCCCC
Q ss_conf 310111716789587599997599997899999994798999982019999886168433---33428997268888999
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 166 ~~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~---~~~~~aYV~Q~D~~~~~ 242 (1427)
..++|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.++|.++++.. .++.++||+|++ ++++
T Consensus 30 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~ 105 (255)
T d2hyda1 30 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDN-ILFS 105 (255)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSC-CCCS
T ss_pred CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCC-CCCC
T ss_conf 976064438998399899998899980999999997127863---000153998753078888634145651015-6899
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999999830887332457544327888412799902899986410278754431899999929965446422464
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~ 322 (1427)
.||+|||.|+... . .. .++. +++...+ .... ...|++..||.+|+.
T Consensus 106 ~Ti~eNi~~g~~~--~---~~------------------~~~~---~al~~~~------l~~~--i~~lp~gl~t~i~~~ 151 (255)
T d2hyda1 106 DTVKENILLGRPT--A---TD------------------EEVV---EAAKMAN------AHDF--IMNLPQGYDTEVGER 151 (255)
T ss_dssp SBHHHHHGGGCSS--C---CH------------------HHHH---HHHHHTT------CHHH--HHTSTTGGGCBCCGG
T ss_pred CCHHHHHHCCCCC--C---CH------------------HHHH---HHHHHHC------CHHH--HHHCCCCCCCHHCCC
T ss_conf 8799998515867--9---99------------------9999---9999969------7999--973624201033388
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEE
Q ss_conf 57888967868999999980899487986799899989799999999999870896899993379515772117099970
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~ 402 (1427)
+. .||||||||++|||+++.+|++++||||||+||+.++..|++.|+++.+ ++|+|+..|.+ +....+|+|++|+
T Consensus 152 g~-~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~--~~~~~~D~ii~l~ 226 (255)
T d2hyda1 152 GV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRL--STITHADKIVVIE 226 (255)
T ss_dssp GT-TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSG--GGTTTCSEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEE
T ss_conf 89-8499999999999998559989998376544797799999999998753--88899996899--9998599999998
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 883898529678999
Q 000555 403 EGHLVYQGPRAEVLE 417 (1427)
Q Consensus 403 ~G~ivy~Gp~~~~~~ 417 (1427)
+|+++.+|+++++++
T Consensus 227 ~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 227 NGHIVETGTHRELIA 241 (255)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHH
T ss_conf 999999889999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=316.75 Aligned_cols=201 Identities=24% Similarity=0.347 Sum_probs=87.4
Q ss_pred CEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC--CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 30102405688488399997689999357884041897786269899997913782--2223238887158888999999
Q 000555 852 LQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ--STFARISGYVEQNDIHSPQVTV 929 (1427)
Q Consensus 852 ~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~~Tv 929 (1427)
+++|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+|||+|+..+++.+|+
T Consensus 15 ~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv 92 (238)
T d1vpla_ 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 92 (238)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBH
T ss_pred EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCH
T ss_conf 999806256884897999999999999999999966988--788879998672446839887218675001546878667
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 99999998512886799877999999999993996433342348999889988888899999986199788981999999
Q 000555 930 EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1427)
Q Consensus 930 ~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgL 1009 (1427)
.|++.|.+.++ ..+.++.++.++.+++.++|.+..+..+ +.||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~qrv~iA~al~~~p~illLDEPt~gL 164 (238)
T d1vpla_ 93 IEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGL 164 (238)
T ss_dssp HHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTC
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 78889899861---7998999999999998679788885045-----337998989999999986599988733798897
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCCC
Q ss_conf 9999999999999988589899999558888899741658899169199990578
Q 000555 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~~ 1064 (1427)
|+.+...+.+++++++++|+|||+++|++. ++...+|++++|.+ |++++.|++
T Consensus 165 D~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~ 217 (238)
T d1vpla_ 165 DVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 217 (238)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 989999999999999965998999959899-99996999999989-999999289
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=319.72 Aligned_cols=209 Identities=24% Similarity=0.327 Sum_probs=182.6
Q ss_pred EEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 79831146982751000138884343010240568848839999768999935788404189778626989999791378
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++.+|++++++ . .+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949-------------9-78843378987998999998999829999999964768--88788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 2-222323888715888899999999999998512886799877999999999993996433342348999889988888
Q 000555 907 Q-STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 907 ~-~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrk 985 (1427)
. ...+|.+|||+|+..++|.+||+|++.|...++- ... .++++++++.+++.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~---~~~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKD---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCC---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCC---CCH---HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHC
T ss_conf 521657405615121111746657788888776405---538---999999999825655575895-----547999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCCC
Q ss_conf 89999998619978898199999999999999999999885-89899999558888899741658899169199990578
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 986 rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~~ 1064 (1427)
|++|||+|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|||+++|++. ++...+|++++|.+ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=312.01 Aligned_cols=210 Identities=23% Similarity=0.386 Sum_probs=167.9
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC---CCCEEEEECCCCCCCCC
Q ss_conf 310111716789587599997599997899999994798999982019999886168433---33428997268888999
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 166 ~~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~---~~~~~aYV~Q~D~~~~~ 242 (1427)
..++|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+.. +++.++||+|++ +++.
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~~ 102 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNV-HLFN 102 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSC-CCCS
T ss_pred CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECC-CCCC
T ss_conf 976353328998599999999999985999999986216888---468987880121110665420687995025-4478
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999999830887332457544327888412799902899986410278754431899999929965446422464
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~ 322 (1427)
.|+++|+.|+.. ... .. .++. +++...+ ....+. .|++..||.+|+.
T Consensus 103 ~ti~~n~~~~~~-~~~---~~------------------~~i~---~a~~~~~------l~~~i~--~l~~gl~t~~~~~ 149 (253)
T d3b60a1 103 DTVANNIAYART-EEY---SR------------------EQIE---EAARMAY------AMDFIN--KMDNGLDTIIGEN 149 (253)
T ss_dssp SBHHHHHHTTTT-SCC---CH------------------HHHH---HHHHTTT------CHHHHH--HSTTGGGSBCCTT
T ss_pred CCHHHHHHHCCC-CCC---CH------------------HHHH---HHHHHHH------HHHHHH--HCCCCCHHHHCCC
T ss_conf 620243320572-208---99------------------9999---9999981------799997--3554410143488
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEE
Q ss_conf 57888967868999999980899487986799899989799999999999870896899993379515772117099970
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~ 402 (1427)
+. .|||||||||+|||||+.+|++++||||||+||+.++..|++.|+++.+ ++|+|+..|.. +....||+|++|.
T Consensus 150 ~~-~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~v~vl~ 224 (253)
T d3b60a1 150 GV-LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEQADEIVVVE 224 (253)
T ss_dssp SC-SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG--GGTTTCSEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHHCCEEEEEE
T ss_conf 89-8499999999999999549988995164445898899999999987522--78899998879--9998599999998
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 883898529678999
Q 000555 403 EGHLVYQGPRAEVLE 417 (1427)
Q Consensus 403 ~G~ivy~Gp~~~~~~ 417 (1427)
+|+++.+|+++++++
T Consensus 225 ~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 225 DGIIVERGTHSELLA 239 (253)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHH
T ss_conf 999999889999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=308.89 Aligned_cols=209 Identities=22% Similarity=0.287 Sum_probs=181.8
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC--CCCCEEEEECCCCCCCCCC
Q ss_conf 31011171678958759999759999789999999479899998201999988616843--3334289972688889999
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--HVQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 166 ~~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~--~~~~~~aYV~Q~D~~~~~l 243 (1427)
.+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+..+. ..++.++||+|.+..++++
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCC
T ss_conf 999980625688489799999999999999999996698878---88799986724468398872186750015468786
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999998308873324575443278884127999028999864102787544318999999299654464224645
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~~ 323 (1427)
||+|++.|.+.+.+... .+ ....++.+++.++|.+-.+..++
T Consensus 91 tv~e~l~~~~~~~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~--- 132 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASSS-----------SE------------------------IEEMVERATEIAGLGEKIKDRVS--- 132 (238)
T ss_dssp BHHHHHHHHHHHHCCCH-----------HH------------------------HHHHHHHHHHHHCCGGGGGSBGG---
T ss_pred CHHHHHHHHHHHCCCCH-----------HH------------------------HHHHHHHHHHHCCCHHHHHHHHH---
T ss_conf 67788898998617998-----------99------------------------99999999986797888850453---
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEEC
Q ss_conf 78889678689999999808994879867998999897999999999998708968999933795157721170999708
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~~ 403 (1427)
.+|||||||++||++|+.+|++++|||||+|||+.++.+|++.++++.. .|+|++++.|. ..++..++|+|++|.+
T Consensus 133 --~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH~-l~~~~~~~drv~vl~~ 208 (238)
T d1vpla_ 133 --TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHN-MLEVEFLCDRIALIHN 208 (238)
T ss_dssp --GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECC-HHHHTTTCSEEEEEET
T ss_pred --HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEEEEEEC
T ss_conf --3799898999999998659998873379889798999999999999996-59989999598-9999996999999989
Q ss_pred CEEEEECCHHHHHHHH
Q ss_conf 8389852967899999
Q 000555 404 GHLVYQGPRAEVLEFF 419 (1427)
Q Consensus 404 G~ivy~Gp~~~~~~~f 419 (1427)
|++++.|+++++.+.+
T Consensus 209 G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 209 GTIVETGTVEELKERY 224 (238)
T ss_dssp TEEEEEEEHHHHHHHT
T ss_pred CEEEEECCHHHHHHCC
T ss_conf 9999992899998652
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=307.65 Aligned_cols=206 Identities=20% Similarity=0.265 Sum_probs=126.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC----------------CCCEE
Q ss_conf 10111716789587599997599997899999994798999982019999886168433----------------33428
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH----------------VQRTS 230 (1427)
Q Consensus 167 ~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~----------------~~~~~ 230 (1427)
.++|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.+++... .++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCE
T ss_conf 99881506688699799999899982999999997476678---997799999933677520000235176799974544
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 997268888999999999999998-3088733245754432788841279990289998641027875443189999992
Q 000555 231 AYISQTDNHIPELTVRETFDFAAR-WQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVL 309 (1427)
Q Consensus 231 aYV~Q~D~~~~~lTVrEtL~Fa~~-~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~l 309 (1427)
+||.|++..++.+||+||+.|+.. ..+. .+.+. ..++..+++.+
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~-----------~~~~~------------------------~~~~~~~l~~~ 136 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGL-----------SKHDA------------------------RERALKYLAKV 136 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCC-----------CHHHH------------------------HHHHHHHHHHT
T ss_pred EEEEECHHHCCCHHCCHHHHHHHHHHCCC-----------CHHHH------------------------HHHHHHHHHHC
T ss_conf 89983323141101021365657876299-----------98999------------------------99999999982
Q ss_pred CCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 99654-46422464578889678689999999808994879867998999897999999999998708968999933795
Q 000555 310 GLDLC-SETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPP 388 (1427)
Q Consensus 310 gL~~~-~dT~VG~~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~ 388 (1427)
||.+- .+.. ...|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+ .|.|+++.. |-.
T Consensus 137 ~l~~~~~~~~-----p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vt-Hdl 209 (258)
T d1b0ua_ 137 GIDERAQGKY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVT-HEM 209 (258)
T ss_dssp TCCHHHHTSC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEEC-SCH
T ss_pred CCCHHHHCCC-----CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEEE-CCH
T ss_conf 9952443068-----220567788898999998439987885245556887888899876554103-688338994-899
Q ss_pred HHHHHHCCCEEEEECCEEEEECCHHHHHH
Q ss_conf 15772117099970883898529678999
Q 000555 389 PETFDLFDDLLLLSEGHLVYQGPRAEVLE 417 (1427)
Q Consensus 389 ~e~~~lfD~IilL~~G~ivy~Gp~~~~~~ 417 (1427)
.++..++|+|++|.+|+++++|+++++..
T Consensus 210 ~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 210 GFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998699999997999999849999983
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=314.97 Aligned_cols=199 Identities=24% Similarity=0.369 Sum_probs=161.4
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 7167895875999975999978999999947989999820199998861684333-342899726888899999999999
Q 000555 172 DVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-QRTSAYISQTDNHIPELTVRETFD 250 (1427)
Q Consensus 172 ~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~-~~~~aYV~Q~D~~~~~lTVrEtL~ 250 (1427)
|+|+.+. +++++|+||||||||||+++|+|.++|+ +|+|.+||.++....+ +|.++||+|++.+++.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99983088733245754432788841279990289998641027875443189999992996544642246457888967
Q 000555 251 FAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330 (1427)
Q Consensus 251 Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~~~rgLSGG 330 (1427)
|+.+ .. .+.+. +.+++++++.+||.+..|..+ ..||||
T Consensus 93 ~~l~--~~-----------~~~~~------------------------~~~v~~~l~~~gl~~~~~~~~-----~~LSGG 130 (240)
T d2onka1 93 YGLR--NV-----------ERVER------------------------DRRVREMAEKLGIAHLLDRKP-----ARLSGG 130 (240)
T ss_dssp TTCT--TS-----------CHHHH------------------------HHHHHHHHHTTTCTTTTTCCG-----GGSCHH
T ss_pred HHHC--CC-----------CHHHH------------------------HHHHHHHHHHCCCHHHHHCCH-----HHCCHH
T ss_conf 5323--36-----------77889------------------------999999998638375665794-----448999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEECCEEEEEC
Q ss_conf 86899999998089948798679989998979999999999987089689999337951577211709997088389852
Q 000555 331 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHLVYQG 410 (1427)
Q Consensus 331 QKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~~G~ivy~G 410 (1427)
|||||+||||++.+|++++|||||+|||+.++.++++.++++.+..+.|+|++.|. ..++..++|+|++|++|+++.+|
T Consensus 131 ~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd-~~~~~~~adri~vm~~G~ii~~G 209 (240)
T d2onka1 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVEKG 209 (240)
T ss_dssp HHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEEE
T ss_conf 98999998777516770675286555887999999999999987439769998189-99999969999999899999990
Q ss_pred CHHHHHH
Q ss_conf 9678999
Q 000555 411 PRAEVLE 417 (1427)
Q Consensus 411 p~~~~~~ 417 (1427)
+++++..
T Consensus 210 ~~~el~~ 216 (240)
T d2onka1 210 KLKELFS 216 (240)
T ss_dssp CHHHHHH
T ss_pred CHHHHHC
T ss_conf 6999832
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=309.86 Aligned_cols=219 Identities=23% Similarity=0.312 Sum_probs=148.5
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 1011171678958759999759999789999999479899998201999988616843333----428997268888999
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ----RTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~~----~~~aYV~Q~D~~~~~ 242 (1427)
.++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ +-++|++|+...+++
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 68871217998899799999999984999999997797688---737999999664056999998338725776424788
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999999830887332457544327888412799902899986410278754431899999929965446422464
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGND 322 (1427)
Q Consensus 243 lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~ 322 (1427)
+||+||+.+++..++..... .. -.. ...++ .++...+++.+++.+++.+..|..+++
T Consensus 94 ltv~enl~~~~~~~~~~~~~-~~-------~~~-~~~~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~~~- 150 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLN-SL-------FYK-KWIPK-------------EEEMVEKAFKILEFLKLSHLYDRKAGE- 150 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHH-HH-------HHC-SSCCC-------------CHHHHHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred CEEEEEEEEHHHHCCCCCHH-HH-------HHH-CCCCC-------------HHHHHHHHHHHHHHCCCCHHCCCCHHH-
T ss_conf 74232143013330345045-66-------542-13532-------------899999999998761963020595356-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEE
Q ss_conf 57888967868999999980899487986799899989799999999999870896899993379515772117099970
Q 000555 323 MIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLS 402 (1427)
Q Consensus 323 ~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~ 402 (1427)
|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.. .|.|++++. |...++.+++|+|++|.
T Consensus 151 ----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vs-Hdl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 151 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIE-HRLDIVLNYIDHLYVMF 224 (254)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEC-SCCSTTGGGCSEEEEEE
T ss_pred ----CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEE-CCHHHHHHHCCEEEEEE
T ss_conf ----991888899999999759272324397656999999999999999997-899899994-76999998699999996
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 883898529678999
Q 000555 403 EGHLVYQGPRAEVLE 417 (1427)
Q Consensus 403 ~G~ivy~Gp~~~~~~ 417 (1427)
+|+++..|+++++.+
T Consensus 225 ~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTEEEEEEESHHHHH
T ss_pred CCEEEEEECHHHHHH
T ss_conf 998999966899865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=318.31 Aligned_cols=209 Identities=22% Similarity=0.333 Sum_probs=167.5
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC---CCCEEEEECCCCCCCCCC
Q ss_conf 10111716789587599997599997899999994798999982019999886168433---334289972688889999
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTDNHIPEL 243 (1427)
Q Consensus 167 ~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~---~~~~~aYV~Q~D~~~~~l 243 (1427)
.++|+|||+.++||+.++|+||||||||||+++|+|.++|. +|+|.+||.++++.. .++.++||+|++.+ ++.
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~ 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAI-MAG 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCC-CCE
T ss_pred CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCC-CCC
T ss_conf 84142258998599999999999997999999999960989---87798899884424678887436797566545-785
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999998308873324575443278884127999028999864102787544318999999299654464224645
Q 000555 244 TVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDM 323 (1427)
Q Consensus 244 TVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~~ 323 (1427)
||+||+.++...... . .+.....+.+.... ....+.+..+|.+|+.+
T Consensus 91 ti~eNi~~~~~~~~~----~------------------~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~g 137 (242)
T d1mv5a_ 91 TIRENLTYGLEGDYT----D------------------EDLWQVLDLAFARS-----------FVENMPDQLNTEVGERG 137 (242)
T ss_dssp EHHHHTTSCTTSCSC----H------------------HHHHHHHHHHTCTT-----------TTTSSTTGGGCEESTTS
T ss_pred CHHHHEECCCCCCCC----H------------------HHHHHHHHHHHHHH-----------HHCCCCCCCCCCCCCCC
T ss_conf 345430124455542----3------------------56778999997555-----------42037421015236878
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEEC
Q ss_conf 78889678689999999808994879867998999897999999999998708968999933795157721170999708
Q 000555 324 IRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 324 ~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~~ 403 (1427)
. .|||||||||+||||++.+|+|++||||||+||+.++.+|++.|+++.+ ++|+|+..|.+ +....+|+|++|++
T Consensus 138 ~-~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~ 212 (242)
T d1mv5a_ 138 V-KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRL--STIVDADKIYFIEK 212 (242)
T ss_dssp B-CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSH--HHHHHCSEEEEEET
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHHCCEEEEEEC
T ss_conf 9-8799999999999998529989996588655698899999887888717--99899997879--99984999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 83898529678999
Q 000555 404 GHLVYQGPRAEVLE 417 (1427)
Q Consensus 404 G~ivy~Gp~~~~~~ 417 (1427)
|+++++|+++++++
T Consensus 213 G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 213 GQITGSGKHNELVA 226 (242)
T ss_dssp TEECCCSCHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999999999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=309.91 Aligned_cols=218 Identities=24% Similarity=0.291 Sum_probs=185.9
Q ss_pred EEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 37983114698275100013888434301024056884883999976899993578840418977862698999979137
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
-++.+|++.+++ ..++|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 699977899979-------------9688712179988997999999999849999999977976--8873799999966
Q ss_pred CCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8222----232388871588889999999999999851288----------67998779999999999939964333423
Q 000555 906 EQST----FARISGYVEQNDIHSPQVTVEESLWFSANLRLS----------KEVSKNQRHEFVEEVMRLVELDSLRDALV 971 (1427)
Q Consensus 906 ~~~~----~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~----------~~~~~~~~~~~v~~vl~~l~L~~~~~~~v 971 (1427)
.... .++.++|++|+...++.+||+|++.+++..+.. .....++..+.++++++.+++.+.+|..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEE
Q ss_conf 48999889988888899999986199788981999999999999999999998858989999955888889974165889
Q 000555 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1051 (1427)
Q Consensus 972 g~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~ 1051 (1427)
+ .||||||||+.||++|+.+|++|+|||||+|||+.+...+++.++++.++|.||++++|+.. ++.+.+|++++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEECCCCC
Q ss_conf 91691999905788
Q 000555 1052 MKRGGRVIYGGKLG 1065 (1427)
Q Consensus 1052 l~~gg~~~~~G~~~ 1065 (1427)
|.+ |+++..|++.
T Consensus 223 m~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGE 235 (254)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEECHH
T ss_conf 969-9899996689
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=308.11 Aligned_cols=204 Identities=24% Similarity=0.382 Sum_probs=105.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC----CCEEEEECCCCCCCCC
Q ss_conf 101117167895875999975999978999999947989999820199998861684333----3428997268888999
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV----QRTSAYISQTDNHIPE 242 (1427)
Q Consensus 167 ~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~----~~~~aYV~Q~D~~~~~ 242 (1427)
.++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +.-++|++|+...++.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88883025788899799999999985999999996788888---038984244344660888887423556765545776
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 9999999999983088733245754432788841279990289998641027875443189999992-996544642246
Q 000555 243 LTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVL-GLDLCSETVVGN 321 (1427)
Q Consensus 243 lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~l-gL~~~~dT~VG~ 321 (1427)
+||+||+.+++......+. .....+.++..+ +|.+..+..++
T Consensus 96 ltv~en~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~- 138 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKEG------------------------------------IKRDLEWIFSLFPRLKERLKQLGG- 138 (240)
T ss_dssp SBHHHHHHGGGTTCCCSSH------------------------------------HHHHHHHHHHHCHHHHTTTTSBSS-
T ss_pred CCHHHHHHHHHHHCCCHHH------------------------------------HHHHHHHHHHHHHCHHHHHHCCHH-
T ss_conf 3699999988873278889------------------------------------999999999874176888758543-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEE
Q ss_conf 45788896786899999998089948798679989998979999999999987089689999337951577211709997
Q 000555 322 DMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL 401 (1427)
Q Consensus 322 ~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL 401 (1427)
.|||||||||+||++|+.+|++++|||||+|||+.+..+|++.++++.+ .|+|++++.| ...++.+++|+|++|
T Consensus 139 ----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~~tH-~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 139 ----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQ-NALGALKVAHYGYVL 212 (240)
T ss_dssp ----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEES-CHHHHHHHCSEEEEE
T ss_pred ----HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEC-CHHHHHHHCCEEEEE
T ss_conf ----3899999999999999829987400398867999999999999999996-8998999958-899999969999999
Q ss_pred ECCEEEEECCHHHHH
Q ss_conf 088389852967899
Q 000555 402 SEGHLVYQGPRAEVL 416 (1427)
Q Consensus 402 ~~G~ivy~Gp~~~~~ 416 (1427)
.+|++++.|+++++.
T Consensus 213 ~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 213 ETGQIVLEGKASELL 227 (240)
T ss_dssp ETTEEEEEEEHHHHH
T ss_pred ECCEEEEECCHHHHH
T ss_conf 899999984899984
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=308.61 Aligned_cols=215 Identities=21% Similarity=0.331 Sum_probs=182.0
Q ss_pred CEEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 23798311469827510001388843430102405688488399997689999357884041897786269899997913
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++.+|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 0799961899989-------------9888830257888997999999999859999999967888--880389842443
Q ss_pred CCCC---CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7822---22-323888715888899999999999998512886799877999999999993-996433342348999889
Q 000555 905 KEQS---TF-ARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV-ELDSLRDALVGFPGSSGL 979 (1427)
Q Consensus 905 ~~~~---~~-~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~~l 979 (1427)
.... .. +.-++|++|+..+++.+||+|++.+.+..+. ..+...+.++++++.+ ++.+..+..+ ..|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCHHHHHHCCH-----HHC
T ss_conf 44660888887423556765545776369999998887327----888999999999987417688875854-----338
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEE
Q ss_conf 98888889999998619978898199999999999999999999885898999995588888997416588991691999
Q 000555 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 980 SgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~ 1059 (1427)
|||||||++||++|+.+|++|+|||||+|||+.+...+++.+++++++|.||++++|+.. ++...+|++++|.+ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-99996999999989-9999
Q ss_pred ECCCCC
Q ss_conf 905788
Q 000555 1060 YGGKLG 1065 (1427)
Q Consensus 1060 ~~G~~~ 1065 (1427)
+.|++.
T Consensus 219 ~~g~~~ 224 (240)
T d1ji0a_ 219 LEGKAS 224 (240)
T ss_dssp EEEEHH
T ss_pred EECCHH
T ss_conf 984899
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-45 Score=302.05 Aligned_cols=215 Identities=22% Similarity=0.277 Sum_probs=184.3
Q ss_pred EEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 37983114698275100013888434301024056884883999976899993578840418977862698999979137
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++.+|++.++. ..++|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEE
T ss_conf 699997899989-------------9998815066886997999998999829999999974766--7899779999993
Q ss_pred CCC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CC
Q ss_conf 822----------------2232388871588889999999999999851288679987799999999999399643-33
Q 000555 906 EQS----------------TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL-RD 968 (1427)
Q Consensus 906 ~~~----------------~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~-~~ 968 (1427)
... ..++.+|||+|+..++|.+||.|++.+..... ...+.++..+.+.++++.++|.+. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 367752000023517679997454489983323141101021365657876--299989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCE
Q ss_conf 42348999889988888899999986199788981999999999999999999998858989999955888889974165
Q 000555 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1048 (1427)
Q Consensus 969 ~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~ 1048 (1427)
... ..||||||||++||++|+.+|++|++||||+|||+.+...|++.++++.++|.|||+++|++. ++...+|+
T Consensus 145 ~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 682-----205677888989999984399878852455568878888998765541036883389948999-99986999
Q ss_pred EEEEECCCEEEECCCC
Q ss_conf 8899169199990578
Q 000555 1049 LLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1049 i~~l~~gg~~~~~G~~ 1064 (1427)
+++|.+ |+++..|++
T Consensus 219 i~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 219 VIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEECCH
T ss_conf 999979-999998499
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=309.74 Aligned_cols=215 Identities=27% Similarity=0.436 Sum_probs=172.4
Q ss_pred EEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 37983114698275100013888434301024056884883999976899993578840418977862698999979137
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++|+||+|+++ .+.+.+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEEC-----------CCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 929999999908-----------999603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 82---2223238887158888999999999999985128867998779999999--99993-996433342348999889
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEE--VMRLV-ELDSLRDALVGFPGSSGL 979 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~--vl~~l-~L~~~~~~~vg~~~~~~l 979 (1427)
.. ..+++.++||+|+..++ ..|++|++.+.. ...+.++.....+. ..+.+ .+....++.+|..+ ..|
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g-~~L 140 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG-AGL 140 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTT-TCC
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC-CCC
T ss_conf 4002465535288982446557-840003522357-----554388899999997557888763201344327878-866
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEE
Q ss_conf 98888889999998619978898199999999999999999999885898999995588888997416588991691999
Q 000555 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059 (1427)
Q Consensus 980 SgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~ 1059 (1427)
|||||||++|||+|+.+|+|++||||||+||+.++..|++.++++.+ ++|+|+++|+++ ....+|++++|++ |+++
T Consensus 141 SGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~-G~Iv 216 (241)
T d2pmka1 141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-GKIV 216 (241)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEEC-CEEE
T ss_conf 98898987544344416513556477655598999999999999858-998999978899--9984999999989-9999
Q ss_pred ECCCC
Q ss_conf 90578
Q 000555 1060 YGGKL 1064 (1427)
Q Consensus 1060 ~~G~~ 1064 (1427)
..|++
T Consensus 217 ~~G~~ 221 (241)
T d2pmka1 217 EQGKH 221 (241)
T ss_dssp EEECH
T ss_pred EECCH
T ss_conf 98899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=306.48 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=173.6
Q ss_pred EEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 37983114698275100013888434301024056884883999976899993578840418977862698999979137
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++|+||+|+++. ..+..+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCC----------CCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 6999998998899----------999976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 82---2223238887158888999999999999985128867998779999-----999999939964333423489998
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEF-----VEEVMRLVELDSLRDALVGFPGSS 977 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~-----v~~vl~~l~L~~~~~~~vg~~~~~ 977 (1427)
.. ..+++.++||+|+..++ ..||+|++.+.... .....+..+. ..+.++ .+.+..++.++..+ .
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~~-~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEAG-S 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSSC-S
T ss_pred CHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCCC-C
T ss_conf 1101378887765404565002-76346554542101----302788999999998999998--56121113675167-6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 89988888899999986199788981999999999999999999998858-98999995588888997416588991691
Q 000555 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 978 ~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~~l~~gg 1056 (1427)
.||||||||++|||+|+.+|+|++||||||+||+.+...|++.++++.++ ++|+|+++|++ +....+|++++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEET-T
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEEEC-C
T ss_conf 68954704899860445687078716757656853689999999997650698999995979--99985999999989-9
Q ss_pred EEEECCCCC
Q ss_conf 999905788
Q 000555 1057 RVIYGGKLG 1065 (1427)
Q Consensus 1057 ~~~~~G~~~ 1065 (1427)
+++..|++.
T Consensus 228 ~iv~~Gt~~ 236 (251)
T d1jj7a_ 228 AIREGGTHQ 236 (251)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
T ss_conf 999988999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.2e-45 Score=301.41 Aligned_cols=213 Identities=25% Similarity=0.398 Sum_probs=174.1
Q ss_pred CEEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 23798311469827510001388843430102405688488399997689999357884041897786269899997913
Q 000555 825 LAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 825 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
..++|+||+|+++ .....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|.|.++|.+
T Consensus 15 g~I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 81 (255)
T d2hyda1 15 GRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 81 (255)
T ss_dssp CCEEEEEEEECSC-----------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CEEEEEEEEEEEC-----------CCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEE
T ss_conf 8799998899959-----------999760644389983998999988999809999999971278--630001539987
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCC
Q ss_conf 782---222323888715888899999999999998512886799877999999999993996-------4333423489
Q 000555 905 KEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELD-------SLRDALVGFP 974 (1427)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~~ 974 (1427)
... ..+++.++||+|++.++ ..||+||+.+.. ...++++ +.++++..++. +-.|+.+|..
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~-----~~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~~ 151 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGR-----PTATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGER 151 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGC-----SSCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred CCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCC-----CCCCHHH----HHHHHHHHCCHHHHHHCCCCCCCHHCCC
T ss_conf 53078888634145651015689-987999985158-----6799999----9999999697999973624201033388
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEEC
Q ss_conf 99889988888899999986199788981999999999999999999998858989999955888889974165889916
Q 000555 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054 (1427)
Q Consensus 975 ~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~~ 1054 (1427)
+ ..||||||||++|||+|+.+|+|++||||||+||+.++..|++.++++.. ++|+|+++|+++ ....+|++++|++
T Consensus 152 g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~~ 227 (255)
T d2hyda1 152 G-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIEN 227 (255)
T ss_dssp G-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEET
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEEC
T ss_conf 8-98499999999999998559989998376544797799999999998753-888999968999--9985999999989
Q ss_pred CCEEEECCCCC
Q ss_conf 91999905788
Q 000555 1055 GGRVIYGGKLG 1065 (1427)
Q Consensus 1055 gg~~~~~G~~~ 1065 (1427)
|+++..|++.
T Consensus 228 -G~iv~~G~~~ 237 (255)
T d2hyda1 228 -GHIVETGTHR 237 (255)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
T ss_conf -9999988999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=308.56 Aligned_cols=211 Identities=26% Similarity=0.450 Sum_probs=170.3
Q ss_pred EEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 79831146982751000138884343010240568848839999768999935788404189778626989999791378
Q 000555 827 MTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 906 (1427)
Q Consensus 827 ~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 906 (1427)
++++||+|+++ +.+++|+|||+.++||+++||+||||||||||+++|+|...+ .+|+|.+||.+..
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 79998899879------------998414225899859999999999999799999999996098--9877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCC
Q ss_conf 2---2223238887158888999999999999985128867998779999999999939-------96433342348999
Q 000555 907 Q---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE-------LDSLRDALVGFPGS 976 (1427)
Q Consensus 907 ~---~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~-------L~~~~~~~vg~~~~ 976 (1427)
. ..+++.+|||+|++.+++. |++|++.+... ...+.++.. +.++..+ +....++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDEDLW----QVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHHHH----HHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-34543012445----554235677----899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 88998888889999998619978898199999999999999999999885898999995588888997416588991691
Q 000555 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1056 (1427)
Q Consensus 977 ~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg 1056 (1427)
..||||||||++|||+|+.+|+|++||||||+||+.++..+++.++++. +|+|||+++|++ +....+|++++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l--~~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL--STIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH--HHHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCH--HHHHHCCEEEEEEC-C
T ss_conf 9879999999999999852998999658865569889999988788871-799899997879--99984999999989-9
Q ss_pred EEEECCCCC
Q ss_conf 999905788
Q 000555 1057 RVIYGGKLG 1065 (1427)
Q Consensus 1057 ~~~~~G~~~ 1065 (1427)
+++..|++.
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
T ss_conf 999999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-44 Score=297.37 Aligned_cols=212 Identities=26% Similarity=0.383 Sum_probs=171.9
Q ss_pred EEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 37983114698275100013888434301024056884883999976899993578840418977862698999979137
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++|+||+|+++ ..+.++|+|||+.+++|+.+||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 13 ~I~~~nvsf~Y~-----------~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYP-----------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSS-----------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred EEEEEEEEEEEC-----------CCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCCC
T ss_conf 799998899929-----------999763533289985999999999999859999999862168--8846898788012
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 82---2223238887158888999999999999985128867998779999999999939964-------3334234899
Q 000555 906 EQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS-------LRDALVGFPG 975 (1427)
Q Consensus 906 ~~---~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~ 975 (1427)
.. ..+++.++||+|+..++ ..|+++++.+.. +...+.++ ++++++..++.+ -.++.+|..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred CHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHHH----HHHHHHHHHHHHHHHHCCCCCHHHHCCC-
T ss_conf 1110665420687995025447-862024332057----22089999----9999999817999973554410143488-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECC
Q ss_conf 98899888888999999861997889819999999999999999999988589899999558888899741658899169
Q 000555 976 SSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055 (1427)
Q Consensus 976 ~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~~g 1055 (1427)
...||||||||++|||+|+.+|+|++||||||+||+.++..|++.++++.+ ++|+|+++|+++ ....+|+|++|.+
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~- 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED- 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf 898499999999999999549988995164445898899999999987522-788999988799--9985999999989-
Q ss_pred CEEEECCCC
Q ss_conf 199990578
Q 000555 1056 GRVIYGGKL 1064 (1427)
Q Consensus 1056 g~~~~~G~~ 1064 (1427)
|+++..|++
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.8e-45 Score=302.95 Aligned_cols=193 Identities=25% Similarity=0.405 Sum_probs=172.0
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 405688488399997689999357884041897786269899997913782-2223238887158888999999999999
Q 000555 857 NVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFARISGYVEQNDIHSPQVTVEESLWF 935 (1427)
Q Consensus 857 ~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~ 935 (1427)
|||+.+. ++.++|+||||||||||+++|+|... +.+|+|.++|.+... ...+|.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 98512886799877999999999993996433342348999889988888899999986199788981999999999999
Q 000555 936 SANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015 (1427)
Q Consensus 936 ~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~ 1015 (1427)
+. ...+.++++++++++++.++|.+..+... ..||||||||++|||+|+.+|++++|||||+|||+.++.
T Consensus 94 ~l-----~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL-----RNVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC-----TTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH-----CCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32-----33677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCCC
Q ss_conf 999999998858-9899999558888899741658899169199990578
Q 000555 1016 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1016 ~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~~ 1064 (1427)
.+++.++++.++ |.|||+++|++. ++...+|++++|.+ |+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.2e-44 Score=295.57 Aligned_cols=198 Identities=22% Similarity=0.329 Sum_probs=157.9
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 10111716789587599997599997899999994798999982019999886168433334289972688889999999
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVR 246 (1427)
Q Consensus 167 ~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~~~~~aYV~Q~D~~~~~lTVr 246 (1427)
.++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++| .++||+|.++.+ ..||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~-~~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIM-PGTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCC-SEEHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCC-CCEEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------999981643026-76032
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999998308873324575443278884127999028999864102787544318999999299654464224645788
Q 000555 247 ETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG 326 (1427)
Q Consensus 247 EtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~~~rg 326 (1427)
||+.|+.... ..++ +...++ .+.......+....+|.+|+.+. .
T Consensus 115 eni~~~~~~~-----~~~~-------------------~~~~~~-----------~~~~~~i~~l~~~~~~~~~~~~~-~ 158 (281)
T d1r0wa_ 115 ENIIFGVSYD-----EYRY-------------------KSVVKA-----------CQLQQDITKFAEQDNTVLGEGGV-T 158 (281)
T ss_dssp HHHTTTSCCC-----HHHH-------------------HHHHHH-----------TTCHHHHTTSTTGGGCEECTTCT-T
T ss_pred CCCCCCCCCC-----CHHH-------------------HHHHHH-----------HHHHHHHHHCHHHHHHHHHHHCC-C
T ss_conf 1420333456-----0579-------------------999999-----------77699998461233235555423-7
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEECCEE
Q ss_conf 89678689999999808994879867998999897999999999998708968999933795157721170999708838
Q 000555 327 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGHL 406 (1427)
Q Consensus 327 LSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~~G~i 406 (1427)
|||||||||++||+|+.+|++++|||||++||+.+..+|++.+.... ..++|+|+..|.. +....+|+|++|.+|++
T Consensus 159 LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~itH~~--~~l~~aDrI~vl~~G~i 235 (281)
T d1r0wa_ 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKM--EHLRKADKILILHQGSS 235 (281)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEEECSCH--HHHHTCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECHH--HHHHHCCEEEEEECCEE
T ss_conf 79999999999999986963513338554489899999999999886-2899999992528--99985999999989999
Q ss_pred EEECCHHHHHH
Q ss_conf 98529678999
Q 000555 407 VYQGPRAEVLE 417 (1427)
Q Consensus 407 vy~Gp~~~~~~ 417 (1427)
+++|+++++..
T Consensus 236 ~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 236 YFYGTFSELQS 246 (281)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHC
T ss_conf 99878999960
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-41 Score=278.35 Aligned_cols=192 Identities=22% Similarity=0.350 Sum_probs=151.8
Q ss_pred CCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 43010240568848839999768999935788404189778626989999791378222232388871588889999999
Q 000555 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVE 930 (1427)
Q Consensus 851 ~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~~Tv~ 930 (1427)
.+++|+|||+.+++|+++||+||||||||||+++|+|... +.+|.|.++|. ++||+|+..+++ .||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEE
T ss_conf 9767737599985999999998999829999999957974--78828999999----------999816430267-6032
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999985128867998779999999---999939964333423489998899888888999999861997889819999
Q 000555 931 ESLWFSANLRLSKEVSKNQRHEFVEE---VMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1427)
Q Consensus 931 e~l~~~a~l~~~~~~~~~~~~~~v~~---vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTs 1007 (1427)
|++.|.. ..........++. ......+....++.++..+ ..||||||||++|||+|+.+|+|++|||||+
T Consensus 115 eni~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 115 ENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHHTTTS------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCCCCCC------CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 1420333------45605799999997769999846123323555542-3779999999999999986963513338554
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCCCC
Q ss_conf 9999999999999999885898999995588888997416588991691999905788
Q 000555 1008 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLG 1065 (1427)
Q Consensus 1008 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~~~ 1065 (1427)
+||+.+...+++.+......++|+|+++|++ +....+|++++|.+ |++++.|++.
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 4898999999999998862899999992528--99985999999989-9999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-41 Score=275.53 Aligned_cols=193 Identities=24% Similarity=0.388 Sum_probs=98.4
Q ss_pred ECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 102405688488399997689999357884041897786269899997913782---22232388871588889999999
Q 000555 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTVE 930 (1427)
Q Consensus 854 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~~Tv~ 930 (1427)
.|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+... ...+...+|+.|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 99999985128867998779999999999939964333423489998899888888999999861-------99788981
Q 000555 931 ESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1003 (1427)
Q Consensus 931 e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~-------~p~il~lD 1003 (1427)
+.+.+... .+.+.+.++++++.+++.+..+..+ +.||||||||++||++|+. +|+|++||
T Consensus 91 ~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH--------DKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCC--------HHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 87641001--------4668999999998659876767684-----4569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCCC
Q ss_conf 9999999999999999999988589899999558888899741658899169199990578
Q 000555 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~~ 1064 (1427)
|||+|||+.+...+.+.++++.++|.|||+++|++. ++...+|++++|++ |++++.|++
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 877778989999999999999867999999967799-99997999999979-989998899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-40 Score=271.78 Aligned_cols=198 Identities=27% Similarity=0.360 Sum_probs=166.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCCCCC
Q ss_conf 01117167895875999975999978999999947989999820199998861684333---342899726888899999
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV---QRTSAYISQTDNHIPELT 244 (1427)
Q Consensus 168 ~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~---~~~~aYV~Q~D~~~~~lT 244 (1427)
..|+|||+.+++||+++|+||||||||||+++|+|..+ .+|+|.++|.++..... ....+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~----~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC----CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC----CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 15558888994898999998999809999999948879----95599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999983088733245754432788841279990289998641027875443189999992996544642246457
Q 000555 245 VRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMI 324 (1427)
Q Consensus 245 VrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~~~ 324 (1427)
+.+++.+...- +.....++.+++.++|++..+..++
T Consensus 89 v~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~---- 124 (231)
T d1l7vc_ 89 VWHYLTLHQHD----------------------------------------KTRTELLNDVAGALALDDKLGRSTN---- 124 (231)
T ss_dssp HHHHHHHHCSC----------------------------------------TTCHHHHHHHHHHTTCTTTTTSBGG----
T ss_pred HHHHHHHCCCH----------------------------------------HHHHHHHHHHHHHCCCHHHHCCCHH----
T ss_conf 98876410014----------------------------------------6689999999986598767676844----
Q ss_pred CCCCHHHHHHHHHHHHHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCC
Q ss_conf 8889678689999999808-------994879867998999897999999999998708968999933795157721170
Q 000555 325 RGVSGGQKKRVTTGEMIVG-------PRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 325 rgLSGGQKkRvsiA~aLv~-------~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~ 397 (1427)
.|||||||||++|++++. +|++++|||||+|||..+...+.+.++++.. .|.|++++.|. ..++.+.+|+
T Consensus 125 -~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHd-l~~~~~~~dr 201 (231)
T d1l7vc_ 125 -QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHD-LNHTLRHAHR 201 (231)
T ss_dssp -GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCC-HHHHHHHCSB
T ss_pred -HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCE
T ss_conf -56998899999999998517133899889997187777898999999999999986-79999999677-9999997999
Q ss_pred EEEEECCEEEEECCHHHHH
Q ss_conf 9997088389852967899
Q 000555 398 LLLLSEGHLVYQGPRAEVL 416 (1427)
Q Consensus 398 IilL~~G~ivy~Gp~~~~~ 416 (1427)
+++|.+|+++++|+++++.
T Consensus 202 i~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 202 AWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CCBEETTEECCCSBHHHHS
T ss_pred EEEEECCEEEEECCHHHHH
T ss_conf 9999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.3e-38 Score=258.21 Aligned_cols=159 Identities=22% Similarity=0.356 Sum_probs=68.9
Q ss_pred EECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 01024056884883999976899993578840418977862698999979137822223238887158888999999999
Q 000555 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEES 932 (1427)
Q Consensus 853 ~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~~Tv~e~ 932 (1427)
++|+|+|+.+++|++++|+||||||||||+++|+|..+ +.+|+|.+||.+... .+..++|++|+..+...+|++|+
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~ 90 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDY 90 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHHH
T ss_conf 28842088985998999999999719999999966205--677889999896267--36708999501357888289999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 99998512886799877999999999993996433342348999889988888899999986199788981999999999
Q 000555 933 LWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1427)
Q Consensus 933 l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~ 1012 (1427)
+.+.+.+.-. ..+. ..+.+.++.+++.+..+ .+ ..||||||||+.||++|+.+|++++|||||+|||..
T Consensus 91 l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~-~~-----~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~ 159 (200)
T d1sgwa_ 91 LKAVASLYGV-KVNK----NEIMDALESVEVLDLKK-KL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159 (200)
T ss_dssp HHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTTS-BG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred HHHHHHHCCC-CCCH----HHHHHHHHHCCCCCCCC-CC-----CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 9999975488-6379----99999998748856301-26-----868971888899999886499899986862016999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999885
Q 000555 1013 AAAIVMRTVRNTVD 1026 (1427)
Q Consensus 1013 ~~~~i~~~l~~~~~ 1026 (1427)
++..+++.++++.+
T Consensus 160 ~~~~i~~~l~~~~~ 173 (200)
T d1sgwa_ 160 SKHKVLKSILEILK 173 (200)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999986
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.2e-37 Score=253.79 Aligned_cols=183 Identities=16% Similarity=0.265 Sum_probs=148.4
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 01117167895875999975999978999999947989999820199998861684333342899726888899999999
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRE 247 (1427)
Q Consensus 168 ~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~~~~~aYV~Q~D~~~~~lTVrE 247 (1427)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|. +|+|.+||.++.+ .++.++|++|+..+...+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHH
T ss_conf 2884208898599899999999971999999996620567---7889999896267--3670899950135788828999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999983088733245754432788841279990289998641027875443189999992996544642246457888
Q 000555 248 TFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGV 327 (1427)
Q Consensus 248 tL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT~VG~~~~rgL 327 (1427)
++.+.+...+.... + ..+...++.+++.+. +..+ ..|
T Consensus 90 ~l~~~~~~~~~~~~---------~----------------------------~~~~~~l~~~~~~~~-~~~~-----~~L 126 (200)
T d1sgwa_ 90 YLKAVASLYGVKVN---------K----------------------------NEIMDALESVEVLDL-KKKL-----GEL 126 (200)
T ss_dssp HHHHHHHHTTCCCC---------H----------------------------HHHHHHHHHTTCCCT-TSBG-----GGS
T ss_pred HHHHHHHHCCCCCC---------H----------------------------HHHHHHHHHCCCCCC-CCCC-----CCC
T ss_conf 99999975488637---------9----------------------------999999987488563-0126-----868
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEEC
Q ss_conf 9678689999999808994879867998999897999999999998708968999933795157721170999708
Q 000555 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSE 403 (1427)
Q Consensus 328 SGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~~ 403 (1427)
|||||||+.+|++++.+|++++|||||+|||..+...+++.++++.+..+.+++++ |+. ++++|.+.+|.+
T Consensus 127 SgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~-~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS-REE----LSYCDVNENLHK 197 (200)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEE-SSC----CTTSSEEEEGGG
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-ECH----HHHCCHHHHEEE
T ss_conf 97188889999988649989998686201699999999999999986799999999-162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.45 E-value=1.8e-15 Score=112.22 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEECCE
Q ss_conf 88967868999999980899487986799899989799999999999870896899993379515772117099970883
Q 000555 326 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEGH 405 (1427)
Q Consensus 326 gLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~~G~ 405 (1427)
.+|+|+++|.++++++...|+++++|||... ..........+.+.....+.+++++.|+. +...+.|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CHHHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHCEEEEEECCE
T ss_conf 6532013789999997409974230277731--00457999999987505797899997447--7898636599871999
Q ss_pred EEEECC
Q ss_conf 898529
Q 000555 406 LVYQGP 411 (1427)
Q Consensus 406 ivy~Gp 411 (1427)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
T ss_conf 999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.32 E-value=1.3e-13 Score=100.25 Aligned_cols=157 Identities=13% Similarity=0.034 Sum_probs=93.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCC--CCC--CCCCCHHHHHHHHHHCCCC
Q ss_conf 999976899993578840418977862698999979137822223238887158--888--9999999999999851288
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQN--DIH--SPQVTVEESLWFSANLRLS 942 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~--d~~--~~~~Tv~e~l~~~a~l~~~ 942 (1427)
.++|.||||+|||||+++|+|.... ..|.+...+.+..... +..++.-+. +.. ....+..+ ..+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~- 70 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETK--KRTGFRIITTEGKKKIFSSKFFTS------KKLV- 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCC------SSEE-
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCC--CCCEEEECCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH------HHHH-
T ss_conf 8999989993899999999814888--8646998771328888--765311233667778875411345------5443-
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 67998779999999999939964333423489998899888888999999861997889819999999999999999999
Q 000555 943 KEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022 (1427)
Q Consensus 943 ~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~ 1022 (1427)
.+ + ..+. ....+++|++++..+++++..+|+++++|||+...+ ........+.
T Consensus 71 ------~~------------~--~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~ 123 (178)
T d1ye8a1 71 ------GS------------Y--GVNV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVR 123 (178)
T ss_dssp ------TT------------E--EECH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHH
T ss_pred ------HH------------H--HCCC-----CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHH
T ss_conf ------02------------3--0376-----256653201378999999740997423027773100--4579999999
Q ss_pred HHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCCC
Q ss_conf 9885-89899999558888899741658899169199990578
Q 000555 1023 NTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1023 ~~~~-~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~~ 1064 (1427)
+..+ .+.++++++|+.. .....|++..+. +|+++.-++.
T Consensus 124 ~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 124 QIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp HHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred HHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCEEEEECCC
T ss_conf 875057978999974477--898636599871-9999998996
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=9.2e-09 Score=69.34 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEE
Q ss_conf 8998888889999998----6199788981999999999999999999998858989999955888889974165889
Q 000555 978 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1051 (1427)
Q Consensus 978 ~lSgGqrkrl~ia~~L----~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~ 1051 (1427)
.+|.|||+.+.++..+ ..+++++++|||-++|++.....+.+.++..++ +.-|++|+|.| .+++.+|++..
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCCEEE
T ss_conf 02577766777776655654226744554320335797899999999998554-88799998988--99973242899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=2.4e-09 Score=73.04 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 78889678689999999----80899487986799899989799999999999870896899993379515772117099
Q 000555 324 IRGVSGGQKKRVTTGEM----IVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLL 399 (1427)
Q Consensus 324 ~rgLSGGQKkRvsiA~a----Lv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~Ii 399 (1427)
...+|+|||+...++.. ...++++++.|||-++|++.....+.+.|+..+. +.-++++. |+|++++.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitT--Hsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVIT--HNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEEC--CCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEE--CCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--88799998--9889997324289
Q ss_pred E--EECCE
Q ss_conf 9--70883
Q 000555 400 L--LSEGH 405 (1427)
Q Consensus 400 l--L~~G~ 405 (1427)
. +.+|.
T Consensus 293 ~v~~~~g~ 300 (308)
T d1e69a_ 293 GVTMVNGV 300 (308)
T ss_dssp EEEESSSC
T ss_pred EEEEECCE
T ss_conf 99996999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=4.3e-09 Score=71.45 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEE
Q ss_conf 88998888889999998----61997889819999999999999999999988589899999558888899741658899
Q 000555 977 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1052 (1427)
Q Consensus 977 ~~lSgGqrkrl~ia~~L----~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l 1052 (1427)
..+|||||.++++|.-+ ..++++++||||+++||+.....+.+.|++++..+.-+|+|+|+| .+.+..|..+..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=3.9e-08 Score=65.33 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEE
Q ss_conf 88896786899999998----08994879867998999897999999999998708968999933795157721170999
Q 000555 325 RGVSGGQKKRVTTGEMI----VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLL 400 (1427)
Q Consensus 325 rgLSGGQKkRvsiA~aL----v~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~Iil 400 (1427)
..+|||||.++++|-.+ +.++++++||||.++||+.....+.+.|++++. .+.-++++.|+| ++.+.+|.++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCH--HHHHHCCCEEE
T ss_conf 332230479999999999954799977999688777899999999999999728-998899995878--99973661799
Q ss_pred E
Q ss_conf 7
Q 000555 401 L 401 (1427)
Q Consensus 401 L 401 (1427)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=98.01 E-value=0.00028 Score=40.76 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=23.2
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 011171678958759999759999789999999479
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 168 ~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
+-|+++.+-++||++++|.|+||+|||||+.-++-.
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 668887469789808999947999799999999972
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=9.3e-05 Score=43.80 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf 88888999999861997889819999999999999999-99998858-989999955888
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPS 1039 (1427)
Q Consensus 982 Gqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~-~l~~~~~~-g~tvi~t~Hqps 1039 (1427)
.|-+|+.-......+.+++++||+-+|-++.....+.. .++.+... +..+++|+|...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999999974546608853222358774566678987645432045442898524687
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.92 E-value=0.00012 Score=42.99 Aligned_cols=59 Identities=8% Similarity=0.174 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 888999999861997889819999999999999999-9999885898999995588888997
Q 000555 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFE 1044 (1427)
Q Consensus 984 rkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~-~l~~~~~~g~tvi~t~Hqps~~i~~ 1044 (1427)
-+++.-....+.+.+++++||.-+|-|+.....+.. .++.+.+.+..+++++|.. ++..
T Consensus 102 l~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~ 161 (224)
T d1ewqa2 102 MEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTA 161 (224)
T ss_dssp HHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHT
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHH
T ss_conf 78898775028977278554545686233200258888888862376137865202--3332
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.90 E-value=2.7e-05 Score=47.23 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=73.4
Q ss_pred ECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 102405688488399997689999357884041897--786269899997913782222323888715888899999999
Q 000555 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK--TGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEE 931 (1427)
Q Consensus 854 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~--~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~~Tv~e 931 (1427)
-|+++.+-++||+++.|.|++|+||||++.-++-.. ..|. .+.|+.- .++..+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-------------------~v~~~s~------E~~~~~ 78 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-------------------KVGLAML------EESVEE 78 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC-------------------CEEEEES------SSCHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------------------CEEEEEE------CCCHHH
T ss_conf 688874697898089999479997999999999726553366-------------------3457640------111135
Q ss_pred HHH-H-HHHCCCCCCCCHHHHH-----HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 999-9-9851288679987799-----9999999993-996433342348999889988888899999986199788981
Q 000555 932 SLW-F-SANLRLSKEVSKNQRH-----EFVEEVMRLV-ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMD 1003 (1427)
Q Consensus 932 ~l~-~-~a~l~~~~~~~~~~~~-----~~v~~vl~~l-~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lD 1003 (1427)
... + +...+.+....+..+. ...++..+.+ +..... .. +........+.....-...--.+|+++++|
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vvID 154 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFH-LY---DSFAEAETDRLLAKLAYMRSGLGCDVIILD 154 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEE-EE---CCC-CCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEE-EE---CCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 77699998645871010122222145677888988740352146-62---143310689999986543213676259970
Q ss_pred CCC-----CCC--CHHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 999-----999--999999999999998858-9899999558
Q 000555 1004 EPT-----SGL--DARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1037 (1427)
Q Consensus 1004 EPT-----sgL--D~~~~~~i~~~l~~~~~~-g~tvi~t~Hq 1037 (1427)
--+ .+- +......+++.+++++++ +.+|+++.|-
T Consensus 155 ~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 155 HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 542120346544306778999999999765016552031035
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.79 E-value=0.00062 Score=38.54 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=36.9
Q ss_pred CCCCEEEEECCCCCC---CHHHHHHHHHHHHHHHHCCCCEEEEEECCC---------CHHHHHHCCCEEEEE
Q ss_conf 899487986799899---989799999999999870896899993379---------515772117099970
Q 000555 343 GPRKTLFMDEISTGL---DSSTTFQIVKCLRNFVHQMDATILMALLQP---------PPETFDLFDDLLLLS 402 (1427)
Q Consensus 343 ~~~~illLDEpTSGL---Ds~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp---------~~e~~~lfD~IilL~ 402 (1427)
..+++++.|..+.-+ +.......+..|.++++..+.+++++.|.+ .......+|.++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred CCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 088533220431430489999999999999999998698399998567512554457764046421699999
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=0.00039 Score=39.81 Aligned_cols=45 Identities=11% Similarity=0.218 Sum_probs=30.0
Q ss_pred HCCCCEEEEECCCC---C--CCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 08994879867998---9--9989799999999999870896899993379
Q 000555 342 VGPRKTLFMDEIST---G--LDSSTTFQIVKCLRNFVHQMDATILMALLQP 387 (1427)
Q Consensus 342 v~~~~illLDEpTS---G--LDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp 387 (1427)
..+++++++|-.+. + -|.....++++.|+.++...+.++++. ||+
T Consensus 130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v-~H~ 179 (274)
T d1nlfa_ 130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFL-HHA 179 (274)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEE-EEC
T ss_pred CCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHH-HHC
T ss_conf 26765896281354226652322568999988777764479754013-100
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.76 E-value=0.00019 Score=41.81 Aligned_cols=63 Identities=17% Similarity=0.054 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEECCCCHHHHHHC
Q ss_conf 78689999999808994879867998999897999999-9999987089689999337951577211
Q 000555 330 GQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVK-CLRNFVHQMDATILMALLQPPPETFDLF 395 (1427)
Q Consensus 330 GQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~-~Lr~la~~~~~Tvi~sl~Qp~~e~~~lf 395 (1427)
.|-+|++-.-...+..+++++||+.+|=|+.-...+.. .+..+.. .+..++++.|.+ +...+.
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~--eL~~l~ 163 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF--ELTALG 163 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH--HHHTCC
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEECH--HHHHHH
T ss_conf 8678898775028977278554545686233200258888888862-376137865202--333221
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00037 Score=39.95 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEECCC
Q ss_conf 78689999999808994879867998999897999999-99999870896899993379
Q 000555 330 GQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVK-CLRNFVHQMDATILMALLQP 387 (1427)
Q Consensus 330 GQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~-~Lr~la~~~~~Tvi~sl~Qp 387 (1427)
.|-+|++-.-.-.++.+++++||+.+|=++.-...+.. .+..+....+..++++.|.+
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 99999999997454660885322235877456667898764543204544289852468
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.42 E-value=0.0025 Score=34.66 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=18.8
Q ss_pred EECE-EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1171-6789587599997599997899999994
Q 000555 170 LNDV-SGVVKPGRMTLLLGPPASGKSTLLLALA 201 (1427)
Q Consensus 170 L~~v-s~~i~pG~lt~ilGp~GSGKSTLL~~L~ 201 (1427)
|+++ .|-+++|+++.|.|+||+|||+|..-++
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 988556899698399999479999999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.40 E-value=6.7e-05 Score=44.72 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=19.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+|+.++++|+||.|||||+|+|.|...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf 698089978898778888773053555
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.0031 Score=34.10 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=71.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH-HHHHHCC
Q ss_conf 848839999768999935788404189778626989999791378222232388871588889999999999-9998512
Q 000555 862 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESL-WFSANLR 940 (1427)
Q Consensus 862 i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~~Tv~e~l-~~~a~l~ 940 (1427)
+.||+++.|.|++|+|||||+.-|+-....|.. ..+..... ...+-|+..++ +..+.. .+.+..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~-----~~~~~~~~---~~~vl~~~~E~------~~~~~~~Rl~~~~- 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPD-----LLEVGELP---TGPVIYLPAED------PPTAIHHRLHALG- 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCC-----TTCCCCCC---CCCEEEEESSS------CHHHHHHHHHHHH-
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC-----CCCCCCCC---CCCEEEEECCC------HHHHHHHHHHHHH-
T ss_conf 558958999928999899999999999976997-----21112357---87368985123------4999999999986-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC-----CCCHHHHH
Q ss_conf 8867998779999999999939964333423489998899888888999999861997889819999-----99999999
Q 000555 941 LSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTS-----GLDARAAA 1015 (1427)
Q Consensus 941 ~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTs-----gLD~~~~~ 1015 (1427)
...+.... ......+.+....+... ....- ..+.-......+++++++|.-+. --|.....
T Consensus 91 --~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~ 156 (274)
T d1nlfa_ 91 --AHLSAEER----QAVADGLLIQPLIGSLP-----NIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMA 156 (274)
T ss_dssp --TTSCHHHH----HHHHHHEEECCCTTSCC-----CTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --HCCCHHHH----HCCCCCCEECCCCCCCC-----HHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHH
T ss_conf --23686665----31233323214567420-----35789---999998875267658962813542266523225689
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf 999999998858-98999995588
Q 000555 1016 IVMRTVRNTVDT-GRTVVCTIHQP 1038 (1427)
Q Consensus 1016 ~i~~~l~~~~~~-g~tvi~t~Hqp 1038 (1427)
.+++.++.++.. +++|+++.|..
T Consensus 157 ~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 157 QVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 999887777644797540131005
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.25 E-value=0.00012 Score=43.05 Aligned_cols=27 Identities=48% Similarity=0.573 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.|++++|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.10 E-value=0.00012 Score=43.10 Aligned_cols=26 Identities=42% Similarity=0.723 Sum_probs=23.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 75999975999978999999947989
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
|++..|+||||||||||.+.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.00017 Score=42.16 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=23.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88399997689999357884041897
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+|+.++++|+||+|||||+|.|.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 69808997889877888877305355
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00014 Score=42.70 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+++|.|++|||||||++.|+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00014 Score=42.63 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=21.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5875999975999978999999947989
Q 000555 178 KPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 178 ~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+.+.+..|+|||||||||+.+.|+.++.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.97 E-value=7.1e-05 Score=44.56 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=25.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 8759999759999789999999479899998201999
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNIT 215 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~ 215 (1427)
.|+.++++|+||.|||||+|+|.|...- -.|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH---HHCCCC
T ss_conf 3564999877873487898751517676---403555
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.91 E-value=0.0038 Score=33.50 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=35.1
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEE
Q ss_conf 9999861997889819999999999999999999988589899999558888899741658
Q 000555 989 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1427)
Q Consensus 989 ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i 1049 (1427)
+..+|-.+|+|++..|.. |..++...+ +.+.+|+.|+.|+|-.+ .+..++++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHH
T ss_conf 999984138889845768---759999999----99724985899833676--67665432
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00038 Score=39.86 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=26.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7895875999975999978999999947989
Q 000555 175 GVVKPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 175 ~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
|-++||+++.|.||||||||||+.-++....
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8985997999995899999999999999998
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.91 E-value=0.002 Score=35.34 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=35.5
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCE
Q ss_conf 999998089948798679989998979999999999987089689999337951577211709
Q 000555 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL 398 (1427)
Q Consensus 336 siA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~I 398 (1427)
.+..+|=.+|++++..|+. |..|+...++ .+ ..|..|+.|+|..+ .+...+++
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa-~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAVQ----AS-LTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHHH----HH-HTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHHHHCCCEEEECCCC---CHHHHHHHHH----HH-HCCCEEEEEECCCC--HHHHHHHH
T ss_conf 9999984138889845768---7599999999----97-24985899833676--67665432
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.86 E-value=0.00017 Score=42.18 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=14.2
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8848839999768999935788404189
Q 000555 861 VFSPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 861 ~i~~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.++.+.-+.|.|++||||||||++|.+.
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9983788899940356625789998653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.83 E-value=0.00028 Score=40.75 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8399997689999357884041897
Q 000555 865 GVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 865 G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
|.++.|+||||||||||++.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.82 E-value=0.00041 Score=39.71 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=20.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5875999975999978999999947989
Q 000555 178 KPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 178 ~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
++|.+..+.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.82 E-value=0.00036 Score=40.04 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 759999759999789999999479899
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
.+.+++.||||+|||||.++|++.+..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00042 Score=39.60 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=21.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.|.+..|+||||||||||.+.|.-+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.79 E-value=0.00024 Score=41.21 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=17.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999759999789999999479899
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
++..|+|++|||||||+..|..++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.76 E-value=0.00036 Score=40.03 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999975999978999999947989
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+.+|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.75 E-value=0.00031 Score=40.51 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999975999978999999947989
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+..+|.||+|||||||.+.|+.++.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.71 E-value=0.00052 Score=39.01 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+++|+||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.70 E-value=0.00059 Score=38.69 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999759999789999999479
Q 000555 181 RMTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
+++.+.|||||||||+.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.67 E-value=0.00046 Score=39.37 Aligned_cols=27 Identities=33% Similarity=0.607 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+|--.+|.|||||||||+.+.|+-+++
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 988899982899988999999999858
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.0087 Score=31.22 Aligned_cols=27 Identities=37% Similarity=0.652 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+.+-+++.||||+|||++.++|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.63 E-value=0.00057 Score=38.78 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88399997689999357884041897
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.62 E-value=0.00054 Score=38.95 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=19.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 75999975999978999999947989
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+++.|.|+|||||||+.+.|+.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.61 E-value=0.00057 Score=38.76 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
.+|+|+||+|||||+++|.|.
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.00055 Score=38.88 Aligned_cols=26 Identities=35% Similarity=0.564 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88399997689999357884041897
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.|.++.|+||||+|||||++.|..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.59 E-value=0.00083 Score=37.74 Aligned_cols=31 Identities=39% Similarity=0.443 Sum_probs=26.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6789587599997599997899999994798
Q 000555 174 SGVVKPGRMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 174 s~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.|-+++|+++.|.||||||||||..-++-..
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7998699699998389998899999999986
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00057 Score=38.76 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.00033 Score=40.25 Aligned_cols=26 Identities=42% Similarity=0.664 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999759999789999999479899
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999889997199999999999997
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.52 E-value=0.00075 Score=38.03 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+|.|||||||||+.+.|+-++.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.51 E-value=0.00086 Score=37.64 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599997599997899999994798
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.+.+|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.48 E-value=0.00057 Score=38.76 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 587599997599997899999994798
Q 000555 178 KPGRMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 178 ~pG~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
+.+.+..|+|||||||||+.+.|+-++
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.46 E-value=0.001 Score=37.16 Aligned_cols=26 Identities=42% Similarity=0.659 Sum_probs=19.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87599997599997899999994798
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
+|--.+++|||||||||..+.|+-++
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 96389998999998899999999986
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.45 E-value=0.0014 Score=36.35 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=24.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 67895875999975999978999999947
Q 000555 174 SGVVKPGRMTLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 174 s~~i~pG~lt~ilGp~GSGKSTLL~~L~G 202 (1427)
.|=+++|++++|.||||||||||..-++-
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69955887999985898988999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.00076 Score=37.99 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999975999978999999947989
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+.+|+|||||||||+.+.|+-++.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999998999999999859
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.44 E-value=0.00023 Score=41.32 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8839999768999935788404189
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.|..++++|+||+|||||+|.|.+.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 3564999877873487898751517
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.43 E-value=0.00072 Score=38.14 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++|+|++|+|||||++.|+|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=4.3e-05 Score=45.94 Aligned_cols=33 Identities=24% Similarity=0.160 Sum_probs=20.0
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 1171678958759999759999789999999479
Q 000555 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 170 L~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
.++.++.+.+| +++|+|||||||||+|.||.--
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 70279974998-0899889999879999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.41 E-value=0.0011 Score=36.91 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999759999789999999479899
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
++.+|.|+|||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.37 E-value=0.0044 Score=33.12 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||+++|.|.
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999778
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.35 E-value=0.001 Score=37.18 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=27.8
Q ss_pred EEC-EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 117-167895875999975999978999999947989
Q 000555 170 LND-VSGVVKPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 170 L~~-vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
|++ +.|-+++|+++.|.|+||+|||+|..-++-..-
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9972079862885999991799998999999999998
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.0011 Score=37.04 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 488399997689999357884041897
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.28 E-value=0.0014 Score=36.21 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=18.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8759999759999789999999479
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
+-++++++|+|||||||+.+.++-.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999899999999976
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.00076 Score=38.00 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=11.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7599997599997899999994798
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
|.+..+.|+|||||||+-+.|+-++
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9699988999999999999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.0015 Score=36.15 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997599997899999994798
Q 000555 182 MTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
..+|+|||||||||..+.|+-++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.21 E-value=0.0013 Score=36.45 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
|+.-.+++||||+|||.|.++|+..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986699989999888899999862132
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.20 E-value=0.0015 Score=36.03 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.19 E-value=0.0015 Score=36.13 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.18 E-value=0.00073 Score=38.07 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=24.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC-CCEEEEEEEECC
Q ss_conf 3999976899993578840418977-862698999979
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRKT-GGYIEGDIKISG 902 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~~-~~~~~G~i~i~g 902 (1427)
.+++|+|++|||||||+..|..+.. .|..-+-|.-++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.16 E-value=0.0015 Score=36.11 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
++++|+||+|||||+++|.|+.
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.16 E-value=0.0014 Score=36.20 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
..|.|||||||||+.+.|+-++.
T Consensus 6 I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0019 Score=35.42 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 75999975999978999999947989
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+++.|+|||||||+||++.|..+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.0015 Score=36.16 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997599997899999994798
Q 000555 182 MTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.++|+|+|++|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0015 Score=36.08 Aligned_cols=26 Identities=35% Similarity=0.295 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 75999975999978999999947989
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 32897438999989999999999997
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.11 E-value=0.0015 Score=36.10 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 488399997689999357884041897
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+.|.++.|.|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.09 E-value=0.0079 Score=31.49 Aligned_cols=24 Identities=46% Similarity=0.724 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
-+++.||||+|||+|.++++..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=5.5e-05 Score=45.26 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=26.8
Q ss_pred CCCEEEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 02405688488399997689999357884041
Q 000555 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLA 886 (1427)
Q Consensus 855 L~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~ 886 (1427)
+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.0012 Score=36.72 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.++|+|||||||+||++.|+.+.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.04 E-value=0.0021 Score=35.18 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
++++|++|+|||||++.|.|..
T Consensus 3 V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998999999996777
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.04 E-value=0.002 Score=35.34 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
-.+|+|.+|+|||||+|+|.|+-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.03 E-value=0.0017 Score=35.73 Aligned_cols=25 Identities=40% Similarity=0.650 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999975999978999999947989
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
...++.||||+||||+.++++..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0016 Score=36.00 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 678958759999759999789999999479
Q 000555 174 SGVVKPGRMTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 174 s~~i~pG~lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
.|-+++|+++.|.||||||||+|...++..
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 699768979999889988788999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0015 Score=36.08 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
...+.|||||||||+-+.|+-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.01 E-value=0.0015 Score=36.15 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976899993578840418
Q 000555 867 LTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g 887 (1427)
+++|.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.00 E-value=0.011 Score=30.47 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=16.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+..-.++.||||+|||+|.+++++.+.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 887578878998763047788787718
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.00 E-value=0.0024 Score=34.80 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999975999978999999947989
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+.+++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.00 E-value=0.0021 Score=35.16 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999879
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.99 E-value=0.0013 Score=36.44 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=10.8
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99976899993578840418
Q 000555 868 TALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g 887 (1427)
+||+|++++|||||++.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.99 E-value=0.0022 Score=35.08 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+|+|||||||||+-+.|+-++.
T Consensus 9 IiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999979
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.0022 Score=34.98 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
++|+|.||+|||||+|+|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999978999999958886
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.98 E-value=0.0019 Score=35.40 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4883999976899993578840418977
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
++|-.++|.|++||||||+.+.|+.+..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.96 E-value=0.0013 Score=36.45 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
++|+|+|++|||||++.|.|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.92 E-value=0.0018 Score=35.65 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
-++|+|++|+|||||++.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.90 E-value=0.0021 Score=35.17 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
..|+||||||||||.+.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.90 E-value=0.0017 Score=35.78 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCC----------HHHHHHHHHHHHHH---HH-CCCEEEEEECCCCHHHHHHHC
Q ss_conf 88888999999861997889819999999----------99999999999998---85-898999995588888997416
Q 000555 982 EQRKRLTIAVELVANPSIIFMDEPTSGLD----------ARAAAIVMRTVRNT---VD-TGRTVVCTIHQPSIDIFEAFD 1047 (1427)
Q Consensus 982 Gqrkrl~ia~~L~~~p~il~lDEPTsgLD----------~~~~~~i~~~l~~~---~~-~g~tvi~t~Hqps~~i~~~fD 1047 (1427)
.++-+-.+..+-...|.|+++||--.=.. ......+...+..+ .. .+.-+|+|+++|.. .|
T Consensus 86 ~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-----ld 160 (265)
T d1r7ra3 86 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI-----ID 160 (265)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT-----TS
T ss_pred HHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH-----CC
T ss_conf 8999999999986398435687546324557876788737999999999999628677799899991799222-----79
Q ss_pred EEEEE-ECCCEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 58899-16919999057887702699999864
Q 000555 1048 ELLLM-KRGGRVIYGGKLGVHSKTMIDYFQAL 1078 (1427)
Q Consensus 1048 ~i~~l-~~gg~~~~~G~~~~~~~~~~~yF~~~ 1078 (1427)
.-+.= .+=.+.++.+++... .-.+-|..+
T Consensus 161 ~al~r~gRf~~~i~~~~p~~~--~R~~il~~~ 190 (265)
T d1r7ra3 161 PAILRPGRLDQLIYIPLPDEK--SRVAILKAN 190 (265)
T ss_dssp CGGGSSTTSEEEEECCCCCCH--HHHHHHHHH
T ss_pred HHHHCCCCCCEEEEECCHHHH--HHHHHHHHH
T ss_conf 978078776479995660788--899999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.89 E-value=0.0034 Score=33.85 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7599997599997899999994798
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.-.+.|.||||+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0016 Score=35.89 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+.+|.|||||||+|+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.88 E-value=0.0026 Score=34.60 Aligned_cols=23 Identities=57% Similarity=0.863 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999997999999999989
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.87 E-value=0.0016 Score=35.88 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 399997689999357884041897
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0024 Score=34.80 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+++|||||||||..+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0031 Score=34.04 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8839999768999935788404189
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+..-+.+.||+|+|||++.++|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.85 E-value=0.0027 Score=34.51 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 75999975999978999999947989
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
-.-+++.||||+|||++.++|+..+.
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 80799889699988999999862010
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.85 E-value=0.003 Score=34.21 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
..+|-|||||||||..+.|+-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.0027 Score=34.42 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
..++|||||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.84 E-value=0.002 Score=35.26 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++|+|++|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.0021 Score=35.17 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 399997689999357884041897
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
-.+||+|.+|+|||||+|+|.|..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 179998999997899999995888
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0027 Score=34.48 Aligned_cols=24 Identities=42% Similarity=0.810 Sum_probs=15.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 839999768999935788404189
Q 000555 865 GVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 865 G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
|-.++++|++++|||||++.|+|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.78 E-value=0.0036 Score=33.69 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.++|+|.+|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.0033 Score=33.89 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+.+|-||+||||||+.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.76 E-value=0.0031 Score=34.12 Aligned_cols=25 Identities=44% Similarity=0.704 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999759999789999999479899
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
-+++.||||+||||+.++|+..+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0026 Score=34.58 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3999976899993578840418977
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
..+.|+||||+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.74 E-value=0.0023 Score=34.93 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
-+.+.||+|+|||+|.++|++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0045 Score=33.08 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=13.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 688488399997689999357884041
Q 000555 860 GVFSPGVLTALVGSSGAGKTTLMDVLA 886 (1427)
Q Consensus 860 ~~i~~G~~~ai~G~sGaGKTTLl~~L~ 886 (1427)
|-+++|.++-|.|++|+|||||+--++
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 996673589980577747899999999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.72 E-value=0.0033 Score=33.95 Aligned_cols=24 Identities=29% Similarity=0.619 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 399997689999357884041897
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
=.+||+|.+|+|||||++.|+|..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 889999999999999999997787
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.71 E-value=0.0023 Score=34.87 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 39999768999935788404189
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
-++||-|++|||||||.+.|+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0042 Score=33.23 Aligned_cols=25 Identities=44% Similarity=0.639 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999975999978999999947989
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
=-.+++|++++|||||++.|.|.-.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~ 26 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREA 26 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8999989999989999999968886
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.71 E-value=0.0025 Score=34.69 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
-.++.||||+|||++.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 468766998883089999998748
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.71 E-value=0.0034 Score=33.85 Aligned_cols=22 Identities=55% Similarity=0.806 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.++.||||+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.69 E-value=0.0034 Score=33.83 Aligned_cols=23 Identities=52% Similarity=0.596 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
..|+|+|||||||+.+.|+-++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0032 Score=33.97 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+++|||||+++|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.67 E-value=0.0023 Score=34.88 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.66 E-value=0.0021 Score=35.13 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999759999789999999479899
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
++..|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.64 E-value=0.0031 Score=34.11 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 3999976899993578840418
Q 000555 866 VLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.63 E-value=0.0021 Score=35.19 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 789587599997599997899999994798999
Q 000555 175 GVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS 207 (1427)
Q Consensus 175 ~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~ 207 (1427)
..++.+.-.+|.||.||||||||++|.+..++.
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999837888999403566257899986530145
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.0026 Score=34.57 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99976899993578840418977
Q 000555 868 TALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
+.|+||||||||||++.|+....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.0046 Score=33.00 Aligned_cols=23 Identities=43% Similarity=0.761 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++|+|.+++|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.61 E-value=0.0039 Score=33.47 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
..++|+|||||||+-+.|+-++.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999949
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0031 Score=34.04 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++|+|++++|||||++.|.+.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.60 E-value=0.0033 Score=33.91 Aligned_cols=23 Identities=48% Similarity=0.765 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+++.||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.59 E-value=0.0042 Score=33.25 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=20.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.++.++|.||+|+|||||++.++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.59 E-value=0.003 Score=34.18 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
++++|++|+|||||++.|.+...
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999967887
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.58 E-value=0.043 Score=26.79 Aligned_cols=163 Identities=15% Similarity=0.067 Sum_probs=76.8
Q ss_pred ECCCE-EEEEECCEEEEEECCCCCCHHHHHHHHCC--CCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 10240-56884883999976899993578840418--9778626989999791378222232388871588889999999
Q 000555 854 LLSNV-SGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVE 930 (1427)
Q Consensus 854 iL~~v-s~~i~~G~~~ai~G~sGaGKTTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~~Tv~ 930 (1427)
-|+++ .|-+++|+++.|.|++|+|||+|..-++. ...++ .. +.|+.- ..+..
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~---~~----------------~~~~s~------e~~~~ 68 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EP----------------GVFVTF------EETPQ 68 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CC----------------EEEEES------SSCHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC---CC----------------CCCCCC------CCCHH
T ss_conf 798855689969839999947999999999999999998568---87----------------420126------67999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHH--HCCCEEEEECCCC
Q ss_conf 9999998512886799877999999999993996433342348999889988888-899999986--1997889819999
Q 000555 931 ESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTS 1007 (1427)
Q Consensus 931 e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrk-rl~ia~~L~--~~p~il~lDEPTs 1007 (1427)
+.......... . .++..+.............. .....+..... .+.-....+ .+|++++.|--+.
T Consensus 69 ~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~ 136 (242)
T d1tf7a1 69 DIIKNARSFGW----D-------LAKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTS 136 (242)
T ss_dssp HHHHHHGGGTC----C-------HHHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTT
T ss_pred HHHHHHHHCCC----C-------HHHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999998499----8-------48988714302444210335-444430245899999999998863122200207889
Q ss_pred CC----CHH-HHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHHCEEEEEE
Q ss_conf 99----999-9999999999988589899999558888--------8997416588991
Q 000555 1008 GL----DAR-AAAIVMRTVRNTVDTGRTVVCTIHQPSI--------DIFEAFDELLLMK 1053 (1427)
Q Consensus 1008 gL----D~~-~~~~i~~~l~~~~~~g~tvi~t~Hqps~--------~i~~~fD~i~~l~ 1053 (1427)
=. +.. ....+.+.++...+.++|++++.|.... ..-..+|.++.+.
T Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 137 VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 98760572678999999999998639716884210255422246762335362999988
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.56 E-value=0.0035 Score=33.71 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 83999976899993578840418977
Q 000555 865 GVLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 865 G~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
..++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.56 E-value=0.0037 Score=33.57 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997599997899999994798
Q 000555 182 MTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
-++|+|++|+|||||++.|.+.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.0026 Score=34.58 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=26.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 56884883999976899993578840418
Q 000555 859 SGVFSPGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 859 s~~i~~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
.|-+++|+++.|.|++|+|||||..-++.
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 58985997999995899999999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.54 E-value=0.0038 Score=33.50 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997599997899999994798
Q 000555 182 MTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.51 E-value=0.0024 Score=34.82 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997689999357884041897
Q 000555 868 TALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+||+|.+++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.49 E-value=0.0048 Score=32.90 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+++|++|+|||||++.|.+...
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999999899999999808998
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.49 E-value=0.0038 Score=33.52 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3999976899993578840418977
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
.++.|.|++||||||+.+.|+....
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.48 E-value=0.0044 Score=33.13 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.+|+|++.+|||||+++|.|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.44 E-value=0.004 Score=33.40 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.43 E-value=0.0039 Score=33.42 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++++|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.40 E-value=0.0057 Score=32.37 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=22.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 759999759999789999999479899
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
...++|.||||+||||+++.++..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 881688898999899999999999754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.0029 Score=34.31 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999976899993578840418977
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
.++|+|++|+|||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.40 E-value=0.0035 Score=33.75 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997689999357884041897
Q 000555 868 TALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+.|+||||||||||++.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.0041 Score=33.33 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
++||-|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.37 E-value=0.0051 Score=32.71 Aligned_cols=23 Identities=48% Similarity=0.608 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
..++|+|||||||+-+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.36 E-value=0.0066 Score=31.97 Aligned_cols=26 Identities=46% Similarity=0.524 Sum_probs=15.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87599997599997899999994798
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.|.+..+.|.|||||||+.+.|.-++
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699998999999899999999887
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.36 E-value=0.0046 Score=32.98 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
++++|+||+|||||++.|.+...
T Consensus 3 I~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999999999999958998
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.34 E-value=0.0038 Score=33.54 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.006 Score=32.26 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=22.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5875999975999978999999947989
Q 000555 178 KPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 178 ~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+.|.+.++-|+.||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.27 E-value=0.0039 Score=33.45 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 39999768999935788404189
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
-.++|+|++|+|||||++.|.+.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 78999999998989999999678
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.26 E-value=0.0059 Score=32.29 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997599997899999994798
Q 000555 182 MTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
-++++|.+|+|||||++.|.+.-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.003 Score=34.20 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
-++++|+|++|||||+++|.|.-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899988999989999999858985
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.19 E-value=0.0056 Score=32.45 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
++++|.+|+|||||++.+.+.-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.0045 Score=33.07 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+++.+|-|+.||||||+++.|+..++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.17 E-value=0.0048 Score=32.85 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=32.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCC
Q ss_conf 9999759999789999999479899998201999988616843333428997268
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQT 236 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~~~~~aYV~Q~ 236 (1427)
=.+++||+|+|||-|.+.||+.++- + =+..++...+ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--P---Fv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--P---FIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--C---EEEEEGGGGC----------CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC--C---EEEEECCEEE------ECCEEECC
T ss_conf 4799899998899999999987389--8---8986255114------11111044
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.10 E-value=0.0059 Score=32.31 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999975999978999999947989
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
-+.+|-|+.||||||+++.|+..++
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.10 E-value=0.019 Score=29.02 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=12.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 875999975999978999999947
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G 202 (1427)
.|.-+++.|+||+|||||...|.-
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999981899998999999998
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.08 E-value=0.0061 Score=32.21 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 39999768999935788404189
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.++.|+||+||||||+.+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0026 Score=34.57 Aligned_cols=26 Identities=42% Similarity=0.413 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88399997689999357884041897
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.|.++.|+|++||||||+-+.|+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.07 E-value=0.033 Score=27.50 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=11.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599997599997899999994798
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.+.+++||+|+||||.+--|+-++
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.0076 Score=31.61 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=31.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9999759999789999999479899998201999988616843333428997268888999
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPE 242 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~~~~~aYV~Q~D~~~~~ 242 (1427)
+++|.|++||||||+.+.|...+.... . ...+..++++|.|.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~--~---------------~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP--E---------------HRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST--T---------------CCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHC--C---------------CCCEEEEEEEEEECCC
T ss_conf 999968999987689999999973046--8---------------9965999521568984
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.06 E-value=0.0027 Score=34.49 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999759999789999999479899
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
-+++.||||+|||||.+.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0899889985299999999873798
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.03 E-value=0.0074 Score=31.66 Aligned_cols=22 Identities=45% Similarity=0.887 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.++.||||+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0056 Score=32.45 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=25.0
Q ss_pred ECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1024056884883999976899993578840418
Q 000555 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 854 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
+|+.+.-.-...-.+||.|+.|||||||++.|..
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998653169832897438999989999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.99 E-value=0.0066 Score=31.99 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 39999768999935788404189
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.99 E-value=0.0073 Score=31.69 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999759999789999999479
Q 000555 182 MTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
.++|+|++.+|||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.93 E-value=0.0043 Score=33.17 Aligned_cols=28 Identities=39% Similarity=0.387 Sum_probs=21.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5875999975999978999999947989
Q 000555 178 KPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 178 ~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+.++..++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.87 E-value=0.0076 Score=31.61 Aligned_cols=26 Identities=42% Similarity=0.547 Sum_probs=22.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48839999768999935788404189
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
++|-.+.|+||+||||||+-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.0099 Score=30.87 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.|.+.++-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0065 Score=32.04 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+.|.||+|+|||||+..++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889997199999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.85 E-value=0.01 Score=30.74 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=12.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 759999759999789999999479
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
+.+++++||+|+||||.+--|+.+
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 779999899999889999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.81 E-value=0.0092 Score=31.05 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975999978999999947
Q 000555 182 MTLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G 202 (1427)
+.+|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.0081 Score=31.40 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8399997689999357884041897
Q 000555 865 GVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 865 G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
-.++.|+||+||||||+.+.|+.+.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.79 E-value=0.0054 Score=32.54 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+..+.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.75 E-value=0.02 Score=28.96 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=12.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 95875999975999978999999947
Q 000555 177 VKPGRMTLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 177 i~pG~lt~ilGp~GSGKSTLL~~L~G 202 (1427)
.-.|.-+++.|+||+|||||...|..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999980899998999999998
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.73 E-value=0.0068 Score=31.93 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997689999357884041897
Q 000555 868 TALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+||+|+..||||||++.|.+..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.71 E-value=0.0099 Score=30.88 Aligned_cols=23 Identities=39% Similarity=0.777 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.++.||+|+||||+.++++..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.01 Score=30.76 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.++.||||+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.69 E-value=0.0084 Score=31.33 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48839999768999935788404189
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
...-.++|.|+.|||||||++.|...
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98159861179988899999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.65 E-value=0.0059 Score=32.31 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=28.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCC
Q ss_conf 99997599997899999994798999982019999886168433334289972688889
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHI 240 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~~~~~aYV~Q~D~~~ 240 (1427)
+.+|.|+|||||||+.++|...+.. +| -.++.++|++-|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~----~~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR----EG---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH----HT---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----CC---------------CCEEEEECCCCCC
T ss_conf 9999899978099999999999715----69---------------9769994777875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.0071 Score=31.79 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.60 E-value=0.0097 Score=30.91 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3999976899993578840418977
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
-+++|-|+.||||||+++.|+....
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.0082 Score=31.40 Aligned_cols=23 Identities=43% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.+.|.|++||||||+-+.|+.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.59 E-value=0.01 Score=30.71 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=28.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 488399997689999357884041897786269899997913
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 904 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 904 (1427)
+.|.++.+.|.|||||||+.+.|+.+.......-.+.++|-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 998699998999999899999999887774275089975367
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.54 E-value=0.0076 Score=31.58 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.+.|+|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.54 E-value=0.0095 Score=30.99 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.+||.||+||||||+-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.0085 Score=31.28 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 39999768999935788404189
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
-++||.|++||||||+-+.|...
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689999876899999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.51 E-value=0.011 Score=30.55 Aligned_cols=21 Identities=52% Similarity=0.688 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999648
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.47 E-value=0.0091 Score=31.09 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997689999357884041897
Q 000555 868 TALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+.|+|++||||||+.+.|+.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.46 E-value=0.013 Score=30.17 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997599997899999994798
Q 000555 182 MTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.++|+|..+||||||+++|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.45 E-value=0.0082 Score=31.38 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+.|+||+||||||+.+.|+.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.45 E-value=0.0092 Score=31.08 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++|+|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.44 E-value=0.014 Score=29.98 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+.+.||+|.|||.|.+.|++.
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 3888779985088999999998
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.44 E-value=0.011 Score=30.58 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 39999768999935788404189
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+++++|.+|+||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.017 Score=29.43 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
|....+++||+|+|||.|.+.|+-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 765899977875006999999986336
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.42 E-value=0.01 Score=30.74 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
.++.||+|+||||+.++++-.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 998899999889999999976
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.014 Score=29.91 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 83999976899993578840418977
Q 000555 865 GVLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 865 G~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
+.+++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.015 Score=29.67 Aligned_cols=53 Identities=23% Similarity=0.346 Sum_probs=31.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 999975999978999999947989999820199998861684333342899726888899999999999999
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAA 253 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~~~~~aYV~Q~D~~~~~lTVrEtL~Fa~ 253 (1427)
+++|-|++|||||||...|.-.+... .| ....++.++.+|.++ |-.|-...+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY~---t~~~r~~L~~ 81 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFYL---THEDQLKLNE 81 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGBC---CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCCC---CHHHHHHHHH
T ss_conf 99837998788999999999999987---27-------------786067635677778---8899999852
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.36 E-value=0.012 Score=30.25 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.36 E-value=0.012 Score=30.29 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.35 E-value=0.012 Score=30.23 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 4883999976899993578840418
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
..-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.35 E-value=0.019 Score=29.07 Aligned_cols=24 Identities=46% Similarity=0.360 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 839999768999935788404189
Q 000555 865 GVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 865 G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
..++.++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.32 E-value=0.011 Score=30.68 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 83999976899993578840418977
Q 000555 865 GVLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 865 G~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
...+.+.||+|+|||||.++|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999889799889999999999865
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.30 E-value=0.018 Score=29.18 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8759999759999789999999479899
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
.|.+.++-|+-||||||+.+.|+-++..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.29 E-value=0.01 Score=30.85 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=27.3
Q ss_pred CCC-EEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 024-056884883999976899993578840418
Q 000555 855 LSN-VSGVFSPGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 855 L~~-vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
|+. +.|-+++|+++.|.|++|+|||++..-++-
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9972079862885999991799998999999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.24 E-value=0.027 Score=28.04 Aligned_cols=30 Identities=30% Similarity=0.225 Sum_probs=16.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 678958759999759999789999999479
Q 000555 174 SGVVKPGRMTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 174 s~~i~pG~lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
+.....|.=+++.|+||+|||||...|..+
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999808999999999999984
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.012 Score=30.34 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
++.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.21 E-value=0.0089 Score=31.15 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.20 E-value=0.0098 Score=30.90 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=25.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 56884883999976899993578840418
Q 000555 859 SGVFSPGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 859 s~~i~~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
.|-+++|+++.|.|++|+|||||..-++-
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.10 E-value=0.012 Score=30.35 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
-+.|+|++||||||+-+.||.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.08 E-value=0.021 Score=28.74 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+++|.+.+|||||+++|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.07 E-value=0.015 Score=29.69 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.07 E-value=0.012 Score=30.37 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48839999768999935788404189
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+.+.++.|+||+||||||+.+.|+.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.016 Score=29.58 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.04 E-value=0.0076 Score=31.60 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.03 E-value=0.015 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3999976899993578840418977
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
-.++++|.+|+|||||++.|.+...
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999898999999966888
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.03 E-value=0.018 Score=29.24 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=13.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 789587599997599997899999994
Q 000555 175 GVVKPGRMTLLLGPPASGKSTLLLALA 201 (1427)
Q Consensus 175 ~~i~pG~lt~ilGp~GSGKSTLL~~L~ 201 (1427)
|-+++|++|.+.||+|+|||||+..++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 986663369996488748899999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.02 E-value=0.023 Score=28.52 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=13.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 6884883999976899993578840418
Q 000555 860 GVFSPGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 860 ~~i~~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
|-++.|.++-+-|++|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.019 Score=29.00 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.97 E-value=0.024 Score=28.39 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=13.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599997599997899999994798
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.+.+++||+|+||||.+--|+-++
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999998899999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.96 E-value=0.0031 Score=34.09 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
.+++|+|++|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.96 E-value=0.012 Score=30.34 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=21.8
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 848839999768999935788404189
Q 000555 862 FSPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 862 i~~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+|+. .+||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.96 E-value=0.018 Score=29.16 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++|+|-|.+|||||+++|.|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.95 E-value=0.02 Score=28.96 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997599997899999994
Q 000555 182 MTLLLGPPASGKSTLLLALA 201 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~ 201 (1427)
+.+|.|++||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.94 E-value=0.012 Score=30.34 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=24.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 5688488399997689999357884041
Q 000555 859 SGVFSPGVLTALVGSSGAGKTTLMDVLA 886 (1427)
Q Consensus 859 s~~i~~G~~~ai~G~sGaGKTTLl~~L~ 886 (1427)
.|-+++|+++.|.|++|+|||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.90 E-value=0.025 Score=28.33 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=20.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95875999975999978999999947989
Q 000555 177 VKPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 177 i~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+||.++++-|+=|||||||.+.++..+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 79982999966877658899999876422
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.88 E-value=0.015 Score=29.64 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 399997689999357884041897
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++.|.|++||||||+.+.|+.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998989989899999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.015 Score=29.62 Aligned_cols=26 Identities=35% Similarity=0.389 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48839999768999935788404189
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+.|.+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.87 E-value=0.015 Score=29.68 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 3999976899993578840418
Q 000555 866 VLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
-++||.|++||||||+.+.|..
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989887789999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.86 E-value=0.016 Score=29.56 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+.|+||+||||||+.+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.85 E-value=0.02 Score=28.86 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=11.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999759999789999999479
Q 000555 181 RMTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
.+.+++||+|+||||.+--|+-+
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999989999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.017 Score=29.35 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.83 E-value=0.023 Score=28.56 Aligned_cols=21 Identities=43% Similarity=0.447 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975999978999999947
Q 000555 182 MTLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G 202 (1427)
+.+|.|++||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.028 Score=27.96 Aligned_cols=23 Identities=48% Similarity=0.691 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
++++|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.78 E-value=0.021 Score=28.76 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997599997899999994798
Q 000555 182 MTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.++|+|.-+||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.73 E-value=0.016 Score=29.62 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99976899993578840418977
Q 000555 868 TALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
+.++|++||||||+-+.|+.+..
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.049 Score=26.42 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.66 E-value=0.0036 Score=33.63 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++++|.+++|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.65 E-value=0.021 Score=28.82 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99975999978999999947
Q 000555 183 TLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G 202 (1427)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.019 Score=29.01 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
++++|++|+|||||++.+.+.-
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.02 Score=28.88 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.55 E-value=0.019 Score=29.01 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.+.|+||+||||||+.+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.54 E-value=0.03 Score=27.80 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=15.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599997599997899999994798
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.+.+++||+|+||||.+--|+-++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998999999899999999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.54 E-value=0.019 Score=29.03 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599997599997899999994798
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
-+++|-|.-||||||||+-+....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889986488899999999998567
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.49 E-value=0.034 Score=27.48 Aligned_cols=33 Identities=27% Similarity=0.210 Sum_probs=26.4
Q ss_pred CCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 0240568848839999768999935788404189
Q 000555 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 855 L~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+| -+...-.|.-+.|+|+||+|||||...|..+
T Consensus 5 lH-~~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 5 MH-GVLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EE-EEEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EE-EEEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 89-9999999999999808999989999999985
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.48 E-value=0.038 Score=27.12 Aligned_cols=35 Identities=29% Similarity=0.245 Sum_probs=26.7
Q ss_pred ECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 102405688488399997689999357884041897
Q 000555 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 854 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.+|.. ...-.|.-+.|.|+||+|||||...|..+-
T Consensus 5 ~~H~~-~v~~~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 5 QIHGV-LLEVFGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEE-EEEETTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEE-EEEECCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 17899-999999999998189999899999999859
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.45 E-value=0.017 Score=29.34 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88399997689999357884041897
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
|+.-+.++||+|+|||.|.++||...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98669998999988889999986213
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.026 Score=28.21 Aligned_cols=34 Identities=44% Similarity=0.696 Sum_probs=21.0
Q ss_pred EECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 0102405688488399997689999357884041897
Q 000555 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 853 ~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.+|+.++. |=.+++|+|+.++|||||||.|+|..
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99970799---87999988999997999999980998
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.027 Score=28.06 Aligned_cols=27 Identities=37% Similarity=0.461 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
|=.++.|+||.++||||||+.|.|...
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 879999889999979999999809987
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.029 Score=27.84 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.37 E-value=0.03 Score=27.80 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+.+|-|+.||||||+++.|..++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=0.023 Score=28.55 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=0.023 Score=28.55 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.34 E-value=0.024 Score=28.45 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8839999768999935788404189
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+..++++||+|+||||.+-=||.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.022 Score=28.65 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.031 Score=27.73 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.26 E-value=0.018 Score=29.14 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=77.0
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 05688488399997689999357884041897-78626989999791378222232388871588889999999999999
Q 000555 858 VSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK-TGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFS 936 (1427)
Q Consensus 858 vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~-~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~ 936 (1427)
+.|-+.+|.++.|.|++|+|||+|..-++... ..+. .+.|+.- ..+..+.....
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~------e~~~~~~~~~~ 73 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAY------EESRAQLLRNA 73 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEES------SSCHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEEC------CCCHHHHHHHH
T ss_conf 5689869849999918999999999999999987232-------------------4411212------67999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEECCCC---CCCHH
Q ss_conf 851288679987799999999999399643334234899988998888889999998-61997889819999---99999
Q 000555 937 ANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVEL-VANPSIIFMDEPTS---GLDAR 1012 (1427)
Q Consensus 937 a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L-~~~p~il~lDEPTs---gLD~~ 1012 (1427)
..+.. +.. +. ...+.....+... ......+.- -.+...+ -.+|++++.|--+. +.+..
T Consensus 74 ~~~~~----~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~~-~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 74 YSWGM----DFE-------EM-ERQNLLKIVCAYP-----ESAGLEDHL-QIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp HTTSC----CHH-------HH-HHTTSEEECCCCG-----GGSCHHHHH-HHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HHCCC----CHH-------HH-HHCCCEEEEEEEC-----CHHHHHHHH-HHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 98299----869-------98-5458617997300-----010179999-999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCC---------CHHHHHHHCEEEEEE
Q ss_conf 99999999999885-898999995588---------888997416588991
Q 000555 1013 AAAIVMRTVRNTVD-TGRTVVCTIHQP---------SIDIFEAFDELLLMK 1053 (1427)
Q Consensus 1013 ~~~~i~~~l~~~~~-~g~tvi~t~Hqp---------s~~i~~~fD~i~~l~ 1053 (1427)
.....+..+.+.++ .+.+++++.|.. +..+....|.++.|.
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999999998698399998567512554457764046421699999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.24 E-value=0.025 Score=28.27 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99975999978999999947
Q 000555 183 TLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G 202 (1427)
++++|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.027 Score=28.13 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
++++|.+|+|||||++.+.+..
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989939999999997199
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.22 E-value=0.023 Score=28.50 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.21 E-value=0.017 Score=29.30 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.19 E-value=0.024 Score=28.37 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.025 Score=28.25 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.022 Score=28.69 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+.|+||+||||||..+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.16 E-value=0.024 Score=28.41 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+.|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.019 Score=29.05 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 56884883999976899993578840418
Q 000555 859 SGVFSPGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 859 s~~i~~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
.|-+.+|+++.|.|++|+|||+|..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.027 Score=28.06 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.025 Score=28.32 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.043 Score=26.81 Aligned_cols=23 Identities=43% Similarity=0.575 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
++++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.11 E-value=0.025 Score=28.35 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999759999789999999479
Q 000555 182 MTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
-++|+|-|.+|||||+++|.+-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.97 E-value=0.022 Score=28.67 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.97 E-value=0.022 Score=28.67 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.028 Score=28.01 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975999978999999947
Q 000555 182 MTLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G 202 (1427)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.89 E-value=0.028 Score=28.01 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+.|+||.||||||+-+.|+.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999889999879999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.89 E-value=0.027 Score=28.05 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88399997689999357884041897
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.+..+.|.|++|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.028 Score=28.00 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.83 E-value=0.022 Score=28.67 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
++++|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999987899999984488
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.80 E-value=0.031 Score=27.72 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 3999976899993578840418
Q 000555 866 VLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
=++||-|++|||||||-+.|..
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8998379987889999999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.78 E-value=0.036 Score=27.29 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=45.2
Q ss_pred HCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCE-EEEECCEEEEECCHHHH----
Q ss_conf 0899487986799899-98979999999999987089689999337951577211709-99708838985296789----
Q 000555 342 VGPRKTLFMDEISTGL-DSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDL-LLLSEGHLVYQGPRAEV---- 415 (1427)
Q Consensus 342 v~~~~illLDEpTSGL-Ds~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~I-ilL~~G~ivy~Gp~~~~---- 415 (1427)
+...+++++||.-.=. +......++..+.... ..++.+|++-..|..+.-..-+++ --|+.|-++.-.|..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~~~~~i 173 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKI 173 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEECCCCHHHHHH
T ss_conf 762130101126550586577889999999876-3166389954875100134326788886185689978882799999
Q ss_pred -HHHHHHCCCCCCCCCCHHHHHH
Q ss_conf -9999864999999999677999
Q 000555 416 -LEFFESLGFQLPPRKGVADFLQ 437 (1427)
Q Consensus 416 -~~~f~~~G~~~p~~~~~adfl~ 437 (1427)
..+...-|+.+++ .+.+|+.
T Consensus 174 L~~~a~~rgl~l~~--~v~~yl~ 194 (213)
T d1l8qa2 174 IKEKLKEFNLELRK--EVIDYLL 194 (213)
T ss_dssp HHHHHHHTTCCCCH--HHHHHHH
T ss_pred HHHHHHHCCCCCCH--HHHHHHH
T ss_conf 99999982999999--9999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.73 E-value=0.033 Score=27.54 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976899993578840418
Q 000555 867 LTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g 887 (1427)
++||.|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.73 E-value=0.031 Score=27.69 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++++|...||||||+|+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.72 E-value=0.029 Score=27.84 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88399997689999357884041897
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.|..++|-|+.||||||+.+.|+.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.67 E-value=0.039 Score=27.06 Aligned_cols=22 Identities=32% Similarity=0.225 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999759999789999999479
Q 000555 182 MTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
-.+++|++++|||||+++|.+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.67 E-value=0.032 Score=27.63 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.++++|...||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=92.63 E-value=0.026 Score=28.16 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHH
Q ss_conf 999975999978999999
Q 000555 182 MTLLLGPPASGKSTLLLA 199 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~ 199 (1427)
-++|.|+|||||||.|-.
T Consensus 16 ~~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEEECCCTTSCHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHH
T ss_conf 989996288438999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.62 E-value=0.048 Score=26.49 Aligned_cols=33 Identities=33% Similarity=0.264 Sum_probs=26.8
Q ss_pred CCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 0240568848839999768999935788404189
Q 000555 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 855 L~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+|. ++..-.|.=+.|.|+||+|||||...|..+
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 889-999999999999808999999999999984
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.61 E-value=0.021 Score=28.76 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99975999978999999947
Q 000555 183 TLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G 202 (1427)
++++|.+|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999970
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.61 E-value=0.029 Score=27.85 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=21.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48839999768999935788404189
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
++-.+++++||+|+||||.+-=||.+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999889999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.60 E-value=0.031 Score=27.72 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 883999976899993578840418977
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
.|.++++-|+.||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.59 E-value=0.035 Score=27.36 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.57 E-value=0.029 Score=27.88 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.045 Score=26.64 Aligned_cols=17 Identities=35% Similarity=0.786 Sum_probs=8.8
Q ss_pred EEEEEECCCCCCHHHHH
Q ss_conf 59999759999789999
Q 000555 181 RMTLLLGPPASGKSTLL 197 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL 197 (1427)
.++.|.||||+||||++
T Consensus 164 ~~~vI~G~pGTGKTt~i 180 (359)
T d1w36d1 164 RISVISGGPGTGKTTTV 180 (359)
T ss_dssp SEEEEECCTTSTHHHHH
T ss_pred CEEEEECCCCCCCEEHH
T ss_conf 85999768988752169
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.54 E-value=0.036 Score=27.26 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.52 E-value=0.034 Score=27.42 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8839999768999935788404189
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
...+++++||+|+||||.+-=||.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.039 Score=27.05 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997599997899999994798
Q 000555 182 MTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
-++|+|.+|+|||||++.+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.38 E-value=0.075 Score=25.24 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
|.=-++++|+..+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 970899997248869999999970412
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.043 Score=26.81 Aligned_cols=23 Identities=43% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999759999789999999479
Q 000555 181 RMTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
+.++|+|++|||||++++.+.-.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 65899907999689999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.34 E-value=0.036 Score=27.27 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+.|+||.||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.038 Score=27.17 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.34 E-value=0.03 Score=27.75 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 39999768999935788404189
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
-.++++|++|+|||||++.+.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999999889999887338
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.041 Score=26.92 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
++++|++|+|||||++-+.+..
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989978999999997398
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.23 E-value=0.034 Score=27.42 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997689999357884041897
Q 000555 868 TALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+.|.||+|+||||+.++++...
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.038 Score=27.13 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997599997899999994798
Q 000555 182 MTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
-++|+|.+|+|||||++.+.+.-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.21 E-value=0.05 Score=26.37 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=27.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7895875999975999978999999947989
Q 000555 175 GVVKPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 175 ~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
|-+.+|++|.+.||||||||||+..++....
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9966735899805777478999999999987
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.20 E-value=0.031 Score=27.66 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=18.2
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 01117167895875999975999978999999
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLA 199 (1427)
Q Consensus 168 ~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~ 199 (1427)
.|+++.. | -++|.|++||||||.|-.
T Consensus 18 ~~v~~~~-----g-~~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 18 EAVRTTE-----G-PLLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp HHHHCCS-----S-CEEEEECTTSCHHHHHHH
T ss_pred HHHHCCC-----C-CEEEEECCCCCHHHHHHH
T ss_conf 9982999-----9-989995298668999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.18 E-value=0.037 Score=27.20 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+||+|.+.+|||||+++|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.046 Score=26.58 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.13 E-value=0.04 Score=26.98 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976899993578840418
Q 000555 867 LTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g 887 (1427)
+++++|.+|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.03 Score=27.78 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.043 Score=26.77 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++-+.+.
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997996989999999739
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.06 E-value=0.058 Score=25.96 Aligned_cols=20 Identities=45% Similarity=0.524 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997599997899999994
Q 000555 182 MTLLLGPPASGKSTLLLALA 201 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~ 201 (1427)
-.+|+|+.|+|||||..+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.034 Score=27.44 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.083 Score=24.98 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999719
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.03 E-value=0.068 Score=25.51 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999759999789999999479
Q 000555 182 MTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
-+.|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.029 Score=27.92 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99975999978999999947
Q 000555 183 TLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G 202 (1427)
++++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999088999999984
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.045 Score=26.66 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.95 E-value=0.046 Score=26.59 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99975999978999999947
Q 000555 183 TLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G 202 (1427)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.046 Score=26.62 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.93 E-value=0.049 Score=26.44 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.91 E-value=0.047 Score=26.54 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976899993578840418
Q 000555 867 LTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g 887 (1427)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.86 E-value=0.052 Score=26.25 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48839999768999935788404189
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+|...+.++||+|.|||.|.+.||..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87658999778750069999999863
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.79 E-value=0.066 Score=25.61 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=9.3
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999768999935788404
Q 000555 868 TALVGSSGAGKTTLMDVL 885 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L 885 (1427)
+||+|..|||||||...|
T Consensus 9 i~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999958989989999999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.77 E-value=0.056 Score=26.06 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997599997899999994
Q 000555 182 MTLLLGPPASGKSTLLLALA 201 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~ 201 (1427)
-++++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.76 E-value=0.038 Score=27.16 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.75 E-value=0.051 Score=26.30 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++-+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.068 Score=25.53 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999759999789999999479899
Q 000555 181 RMTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
++.+|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.73 E-value=0.043 Score=26.80 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 839999768999935788404189
Q 000555 865 GVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 865 G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
-.+++++||+|+||||.+-=||.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 979999899999989999999999
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.68 E-value=0.046 Score=26.61 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
-+|++|.-.+|||||++.|.|.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999934588499999999703
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.66 E-value=0.054 Score=26.15 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975999978999999947
Q 000555 182 MTLLLGPPASGKSTLLLALAG 202 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G 202 (1427)
-++++|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=0.044 Score=26.72 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=0.046 Score=26.58 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+++++|.+|+|||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.62 E-value=0.057 Score=25.99 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.5
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 884883999976899993578840418
Q 000555 861 VFSPGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 861 ~i~~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
..+||.++++-|+=||||||+.+.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 579982999966877658899999876
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.60 E-value=0.072 Score=25.35 Aligned_cols=28 Identities=39% Similarity=0.525 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5875999975999978999999947989
Q 000555 178 KPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 178 ~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
+|....+++||+|+|||.+.+.|+-.+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.54 E-value=0.037 Score=27.22 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 999976899993578840418977862698999979137822223238887158
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQN 920 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~ 920 (1427)
-+.++||||+|||-|.+.||+...- + -+..+.. .|.. .|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-P---Fv~~daT-----~fTe-aGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-P---FIKVEAT-----KFTE-VGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-C---EEEEEGG-----GGC-----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-C---EEEEECC-----EEEE-CCEEECC
T ss_conf 4799899998899999999987389-8---8986255-----1141-1111044
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.54 E-value=0.051 Score=26.30 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=0.038 Score=27.15 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 3999976899993578840418
Q 000555 866 VLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
-.++|+|.+|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.50 E-value=0.059 Score=25.91 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.45 E-value=0.083 Score=24.99 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=15.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999759999789999999479
Q 000555 181 RMTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
.+.+|.|+.||||||..+.|..+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.048 Score=26.48 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.062 Score=25.77 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.41 E-value=0.057 Score=26.00 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++-+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.39 E-value=0.069 Score=25.47 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
-.+++||||.|||++...|+-++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.37 E-value=0.049 Score=26.41 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997689999357884041897
Q 000555 868 TALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+.+.||+|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.045 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.30 E-value=0.059 Score=25.94 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
++.++|.+|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998992999999999728
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.30 E-value=0.041 Score=26.95 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.29 E-value=0.067 Score=25.55 Aligned_cols=18 Identities=56% Similarity=0.739 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999759999789999999
Q 000555 183 TLLLGPPASGKSTLLLAL 200 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L 200 (1427)
++++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.05 Score=26.37 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.24 E-value=0.14 Score=23.52 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 3999976899993578840418
Q 000555 866 VLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
-++.++|.+|+|||||++-+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 7799998999988999998950
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.069 Score=25.48 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.13 E-value=0.054 Score=26.17 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999768999935788404189
Q 000555 868 TALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
++++|+.|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=0.063 Score=25.73 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599997899999994798
Q 000555 183 TLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l 204 (1427)
++++|.+|+|||||++.+.+.-
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999969999999997199
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.05 Score=26.36 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.96 E-value=0.16 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 839999768999935788404189
Q 000555 865 GVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 865 G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
--.++++|.+|+|||||++-+.+.
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 379999998997899999999719
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.053 Score=26.22 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=0.079 Score=25.10 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=18.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 6884883999976899993578840418
Q 000555 860 GVFSPGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 860 ~~i~~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
.-+-.|+..+|.|++|+|||||+..++.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5645787556867999887899999999
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.86 E-value=0.067 Score=25.58 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8839999768999935788404189
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
|-.-+.+.||+|+|||++.++|+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9807998896999889999998620
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.82 E-value=0.055 Score=26.11 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 399997689999357884041897
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
-.+.++|++|+|||||++.+.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.81 E-value=0.057 Score=26.02 Aligned_cols=20 Identities=55% Similarity=0.792 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99997689999357884041
Q 000555 867 LTALVGSSGAGKTTLMDVLA 886 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~ 886 (1427)
-+||+|..|+|||||.+.|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.048 Score=26.47 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.77 E-value=0.055 Score=26.09 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHH---HCCCCC
Q ss_conf 59999759999789999999---479899
Q 000555 181 RMTLLLGPPASGKSTLLLAL---AGKLDS 206 (1427)
Q Consensus 181 ~lt~ilGp~GSGKSTLL~~L---~G~l~~ 206 (1427)
+-.+|+|+.|||||||..+| +|..+.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 29999958989989999999996485340
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.76 E-value=0.067 Score=25.56 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++-+...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.063 Score=25.74 Aligned_cols=29 Identities=31% Similarity=0.615 Sum_probs=25.0
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89587599997599997899999994798
Q 000555 176 VVKPGRMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 176 ~i~pG~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
.+-.|+-.+|.|++|+|||||+..++...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 64578755686799988789999999977
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.072 Score=25.37 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.69 E-value=0.051 Score=26.31 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997689999357884041897
Q 000555 868 TALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+.+.||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.65 E-value=0.063 Score=25.72 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997689999357884041897
Q 000555 868 TALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 868 ~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+.+.||+|+||||+.++++...
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.50 E-value=0.1 Score=24.33 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
..++-||||+||||+.++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 598888998758999999999846
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.48 E-value=0.078 Score=25.16 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.45 E-value=0.079 Score=25.10 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8399997689999357884041897
Q 000555 865 GVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 865 G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
...+.|.||+|.||||+++.|+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.40 E-value=0.11 Score=24.20 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
-.++.||+|+||||+.+.++..+.
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.07 Score=25.46 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 39999768999935788404189
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.++.++|.+|+|||||++.+.+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.074 Score=25.28 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976899993578840418
Q 000555 867 LTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g 887 (1427)
+++++|.+|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.089 Score=24.78 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.11 E-value=0.042 Score=26.85 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 39999768999935788404189
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
-.+||+|-+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.08 E-value=0.1 Score=24.35 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999759999789999999479
Q 000555 182 MTLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~ 203 (1427)
-.+++|.+.+|||||+++|.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999958898099999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.082 Score=25.02 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.01 E-value=0.099 Score=24.49 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.99 E-value=0.091 Score=24.71 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99997689999357884041
Q 000555 867 LTALVGSSGAGKTTLMDVLA 886 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~ 886 (1427)
++.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=89.86 E-value=0.15 Score=23.36 Aligned_cols=27 Identities=41% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+--.+|+|-|.+|||||+|.|.|+..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.80 E-value=0.12 Score=24.05 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=23.8
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8488399997689999357884041897
Q 000555 862 FSPGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 862 i~~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
.+|.--+||+|.-.||||||++.|.+..
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9997089999724886999999997041
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.083 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.72 E-value=0.093 Score=24.64 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976899993578840418
Q 000555 867 LTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g 887 (1427)
+++++|.+|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.66 E-value=0.1 Score=24.45 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.60 E-value=0.079 Score=25.09 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.1 Score=24.34 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976899993578840418
Q 000555 867 LTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g 887 (1427)
+++++|.+|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.49 E-value=0.099 Score=24.49 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=40.6
Q ss_pred HHCCCEEEEECCCCCCCHHHH------HHHHHHHHHH----HHC-CCEEEEEECCCCHHHHHHHCEEEEEEC--CCEEEE
Q ss_conf 619978898199999999999------9999999998----858-989999955888889974165889916--919999
Q 000555 994 VANPSIIFMDEPTSGLDARAA------AIVMRTVRNT----VDT-GRTVVCTIHQPSIDIFEAFDELLLMKR--GGRVIY 1060 (1427)
Q Consensus 994 ~~~p~il~lDEPTsgLD~~~~------~~i~~~l~~~----~~~-g~tvi~t~Hqps~~i~~~fD~i~~l~~--gg~~~~ 1060 (1427)
...|.|+++||-=+=...+.. ..+...+... ... +.-||+|+++|.. .|.-++ .. =.+.++
T Consensus 95 ~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al~-r~gRfd~~i~ 168 (258)
T d1e32a2 95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPALR-RFGRFDREVD 168 (258)
T ss_dssp HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGGT-STTSSCEEEE
T ss_pred HCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHHH-HCCCCCCEEE
T ss_conf 6499499852111322578877770689998775001101234688117975799310-----252454-2463023237
Q ss_pred CCCCCCCCHHHHHHHHHC
Q ss_conf 057887702699999864
Q 000555 1061 GGKLGVHSKTMIDYFQAL 1078 (1427)
Q Consensus 1061 ~G~~~~~~~~~~~yF~~~ 1078 (1427)
.+++.. ..-...|+..
T Consensus 169 ~~~P~~--~~R~~il~~~ 184 (258)
T d1e32a2 169 IGIPDA--TGRLEILQIH 184 (258)
T ss_dssp CCCCCH--HHHHHHHHHT
T ss_pred CCCCCH--HHHHHHHHHH
T ss_conf 899998--8999873220
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.46 E-value=0.09 Score=24.75 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++|+|.+|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.40 E-value=0.1 Score=24.38 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 883999976899993578840418
Q 000555 864 PGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 864 ~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
|---+|++|..++|||||++.|..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.11 Score=24.19 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
++.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.26 E-value=0.11 Score=24.14 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976899993578840418
Q 000555 867 LTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g 887 (1427)
+++++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.26 E-value=0.14 Score=23.45 Aligned_cols=25 Identities=28% Similarity=0.131 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999759999789999999479899
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
.+.|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.21 E-value=0.067 Score=25.57 Aligned_cols=31 Identities=39% Similarity=0.688 Sum_probs=27.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7895875999975999978999999947989
Q 000555 175 GVVKPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 175 ~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
|-++.|++|.+-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9866754789805876522799999999997
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.02 E-value=0.091 Score=24.73 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 39999768999935788404189
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
-.+||+|-+.+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.91 E-value=0.093 Score=24.65 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.80 E-value=0.11 Score=24.25 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=38.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCCCCCCCHHHHHHH
Q ss_conf 99788981999999999999999999998858989999955888889974165889916919999057887702699999
Q 000555 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYF 1075 (1427)
Q Consensus 996 ~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~~~~~~~~~~~yF 1075 (1427)
+.+++++||.-. +...+...+...+.... .....+++.++.+ .+... +.++ -..+.+.++.. +++..|.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~-~i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYS-NSTRFAFACNQSN-KIIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTT-TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCC-CCEEEEECCCCHH-HHHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-32157787752011233-3336653147430-21067-----8877-77765313322--4567888
Q ss_pred HHC
Q ss_conf 864
Q 000555 1076 QAL 1078 (1427)
Q Consensus 1076 ~~~ 1078 (1427)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=88.71 E-value=0.16 Score=23.22 Aligned_cols=21 Identities=38% Similarity=0.339 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
.+++|.+.+|||||++.|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.69 E-value=0.11 Score=24.08 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3999976899993578840418977
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
-++.|-|.-|||||||++-|.....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8899864888999999999985678
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.42 E-value=0.17 Score=23.05 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+++||||.|||++...|+-++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39983587544799999999998
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.13 Score=23.79 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.09 E-value=0.14 Score=23.58 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 399997689999357884041897
Q 000555 866 VLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
..++|=|.-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.08 E-value=0.15 Score=23.27 Aligned_cols=21 Identities=43% Similarity=0.487 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|.+|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.05 E-value=0.17 Score=23.06 Aligned_cols=23 Identities=48% Similarity=0.759 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999978999999947989
Q 000555 183 TLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+.+||+|+|||-|.+.||-.++
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 24418998637899999986443
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.03 E-value=0.17 Score=23.06 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9997599997899999994
Q 000555 183 TLLLGPPASGKSTLLLALA 201 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~ 201 (1427)
.+++|+.++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.02 E-value=0.16 Score=23.14 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975999978999999947989
Q 000555 182 MTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.+.|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.99 E-value=0.15 Score=23.41 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=30.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCCC--CCCCEEEEEEEECCCC
Q ss_conf 68848839999768999935788404189--7786269899997913
Q 000555 860 GVFSPGVLTALVGSSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYP 904 (1427)
Q Consensus 860 ~~i~~G~~~ai~G~sGaGKTTLl~~L~g~--~~~~~~~G~i~i~g~~ 904 (1427)
|-++.|.++.+.|++|+|||||+-.++.. ..++. -++||...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~---~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGV---AAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE---EEEEECCC
T ss_conf 986663369996488748899999999987548988---99998976
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.98 E-value=0.13 Score=23.70 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
++.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.95 E-value=0.13 Score=23.77 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=38.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEECCCCHHHHHHHCEEEEEECCCEEEECCCCCCCCHHHHHHH
Q ss_conf 97889819999999999999999999988589899-99955888889974165889916919999057887702699999
Q 000555 997 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV-VCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYF 1075 (1427)
Q Consensus 997 p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tv-i~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~~~~~~~~~~~yF 1075 (1427)
.+++++||.- .+.......+.+.+.... ..++ +++.+++. .+... +.++ ...+.+.++.. .++..+.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l 167 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERRI 167 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCC--CCEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCCC
T ss_conf 1899996632-000237899998863112--0023201267087-75999-----9988-75401235652--0001102
Q ss_pred HHC
Q ss_conf 864
Q 000555 1076 QAL 1078 (1427)
Q Consensus 1076 ~~~ 1078 (1427)
..+
T Consensus 168 ~~I 170 (227)
T d1sxjc2 168 ANV 170 (227)
T ss_dssp HHH
T ss_pred CCC
T ss_conf 122
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.92 E-value=0.14 Score=23.62 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=41.9
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH-HHCEEEEEECCCEEEECCCCCCCCHHHHH
Q ss_conf 19978898199999999999999999999885898999995588888997-41658899169199990578877026999
Q 000555 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELLLMKRGGRVIYGGKLGVHSKTMID 1073 (1427)
Q Consensus 995 ~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~-~fD~i~~l~~gg~~~~~G~~~~~~~~~~~ 1073 (1427)
.+.+++++||.-. |...+...+.+.+.... ....+|++++.+.. +.. .-++. ..+.+.++.. .++.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~-i~~~l~sR~-------~~i~~~~~~~--~~~~~ 197 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP-IIAPIKSQC-------LLIRCPAPSD--SEIST 197 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS-SCHHHHTTS-------EEEECCCCCH--HHHHH
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCCC-HHHHHHCCH-------HEEEECCCCH--HHHHH
T ss_conf 8724999424333-45431112210022135-66430001021110-025442100-------0243035330--46899
Q ss_pred HHHHC
Q ss_conf 99864
Q 000555 1074 YFQAL 1078 (1427)
Q Consensus 1074 yF~~~ 1078 (1427)
+.+.+
T Consensus 198 ~l~~i 202 (252)
T d1sxje2 198 ILSDV 202 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.69 E-value=0.16 Score=23.11 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=28.4
Q ss_pred HHHHHHHCC--CCEEEEECCCCCCCHH---HHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 999998089--9487986799899989---799999999999870896899993
Q 000555 336 TTGEMIVGP--RKTLFMDEISTGLDSS---TTFQIVKCLRNFVHQMDATILMAL 384 (1427)
Q Consensus 336 siA~aLv~~--~~illLDEpTSGLDs~---ta~~I~~~Lr~la~~~~~Tvi~sl 384 (1427)
.+-..+... +-|||.||..+=+.+. .+.+.-+.|+-......-.+|.+.
T Consensus 105 ~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~t 158 (387)
T d1qvra2 105 AVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGAT 158 (387)
T ss_dssp HHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEE
T ss_pred HHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEC
T ss_conf 999985058996698724088884277787741389999999737885166636
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.16 Score=23.08 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999768999935788404189
Q 000555 867 LTALVGSSGAGKTTLMDVLAGR 888 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~ 888 (1427)
+++++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.47 E-value=0.093 Score=24.66 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997689999357884041897
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
++.+.||+|.||||+++.++...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.74 E-value=0.17 Score=23.05 Aligned_cols=100 Identities=10% Similarity=0.117 Sum_probs=55.9
Q ss_pred HHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEE-EEEECCCEEEECCCCCCCC-HH
Q ss_conf 619978898199999-99999999999999988589899999558888899741658-8991691999905788770-26
Q 000555 994 VANPSIIFMDEPTSG-LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-LLMKRGGRVIYGGKLGVHS-KT 1070 (1427)
Q Consensus 994 ~~~p~il~lDEPTsg-LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i-~~l~~gg~~~~~G~~~~~~-~~ 1070 (1427)
+.+.+++++|+--.= -+......+..++......|+.+|+|+..|..++-..-+++ --|. .|.++.-.|..+.. .-
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~-~g~~~~i~p~d~~~~~i 173 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE-GGILVEIELDNKTRFKI 173 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH-TSEEEECCCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHH-CCEEEEECCCCHHHHHH
T ss_conf 76213010112655058657788999999987631663899548751001343267888861-85689978882799999
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 9999986489999999999101677535
Q 000555 1071 MIDYFQALDGIPSIPSGYNPATWMLEVT 1098 (1427)
Q Consensus 1071 ~~~yF~~~~g~~~~~~~~NpAd~~l~v~ 1098 (1427)
+..+++.. |. .+++ +.++|+++-+
T Consensus 174 L~~~a~~r-gl-~l~~--~v~~yl~~~~ 197 (213)
T d1l8qa2 174 IKEKLKEF-NL-ELRK--EVIDYLLENT 197 (213)
T ss_dssp HHHHHHHT-TC-CCCH--HHHHHHHHHC
T ss_pred HHHHHHHC-CC-CCCH--HHHHHHHHHC
T ss_conf 99999982-99-9999--9999999856
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=86.74 E-value=0.24 Score=22.08 Aligned_cols=27 Identities=26% Similarity=0.510 Sum_probs=23.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 488399997689999357884041897
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
..+-.++++|.+.+|||||+|.|.|+.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 775278998667544355542542661
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.71 E-value=0.2 Score=22.48 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 3999976899993578840418
Q 000555 866 VLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 866 ~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
.++||.|.-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.47 E-value=0.2 Score=22.51 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=22.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 488399997689999357884041897
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
+|.....++||+|.|||.|.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.31 E-value=0.17 Score=22.95 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9997599997899999994
Q 000555 183 TLLLGPPASGKSTLLLALA 201 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~ 201 (1427)
.+|+|+.++|||||+.+|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.25 E-value=0.25 Score=21.93 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=14.5
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 88488399997689999357884041
Q 000555 861 VFSPGVLTALVGSSGAGKTTLMDVLA 886 (1427)
Q Consensus 861 ~i~~G~~~ai~G~sGaGKTTLl~~L~ 886 (1427)
.+-.|+..+|.|++|.|||+|+.-++
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 63678877766799989899999999
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=86.16 E-value=0.17 Score=22.94 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 4883999976899993578840418
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g 887 (1427)
+|.--+|++|.-.+|||||++.|.+
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971899995889809999999999
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=85.55 E-value=0.18 Score=22.80 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999759999789999999479899
Q 000555 183 TLLLGPPASGKSTLLLALAGKLDS 206 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~l~~ 206 (1427)
..|=|+-||||||+++.|+..+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.29 E-value=0.26 Score=21.79 Aligned_cols=21 Identities=43% Similarity=0.490 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999759999789999999479
Q 000555 183 TLLLGPPASGKSTLLLALAGK 203 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~G~ 203 (1427)
++++|..|+|||||++-+...
T Consensus 5 ivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998889999988408
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.21 E-value=0.19 Score=22.74 Aligned_cols=28 Identities=25% Similarity=0.151 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4883999976899993578840418977
Q 000555 863 SPGVLTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
+.+..+.+.||+|.|||++.++|++...
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.16 E-value=0.24 Score=22.01 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976899993578840418
Q 000555 867 LTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g 887 (1427)
++.++|.+|+|||||+.-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.00 E-value=0.31 Score=21.30 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976899993578840418
Q 000555 867 LTALVGSSGAGKTTLMDVLAG 887 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g 887 (1427)
++.++|.+|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=84.79 E-value=0.37 Score=20.79 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=19.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7599997599997899999994798
Q 000555 180 GRMTLLLGPPASGKSTLLLALAGKL 204 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~G~l 204 (1427)
-....+.||+++|||+++++|...+
T Consensus 104 ~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1799998589887789999999983
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.68 E-value=0.21 Score=22.37 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9997599997899999994
Q 000555 183 TLLLGPPASGKSTLLLALA 201 (1427)
Q Consensus 183 t~ilGp~GSGKSTLL~~L~ 201 (1427)
.+++|+.++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.48 E-value=0.25 Score=21.94 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=16.3
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 58759999759999789999
Q 000555 178 KPGRMTLLLGPPASGKSTLL 197 (1427)
Q Consensus 178 ~pG~lt~ilGp~GSGKSTLL 197 (1427)
+.|...+..|.||+|||||-
T Consensus 12 ~~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 12 KEGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TTCCEEEEEECTTSCHHHHT
T ss_pred CCCCEEEEECCCCCCCCCCC
T ss_conf 99988999736879814221
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=84.29 E-value=0.26 Score=21.81 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=21.2
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8488399997689999357884041897
Q 000555 862 FSPGVLTALVGSSGAGKTTLMDVLAGRK 889 (1427)
Q Consensus 862 i~~G~~~ai~G~sGaGKTTLl~~L~g~~ 889 (1427)
..|+. ..++||||.|||-|.+.||...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 78753-2441899863789999998644
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.22 E-value=0.34 Score=21.02 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997599997899999994
Q 000555 182 MTLLLGPPASGKSTLLLALA 201 (1427)
Q Consensus 182 lt~ilGp~GSGKSTLL~~L~ 201 (1427)
=.+++|+.++|||||...|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79999478998999999999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.04 E-value=0.19 Score=22.65 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 34234899988998888889999998619978898199999999999999999999885898999995588
Q 000555 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1038 (1427)
Q Consensus 968 ~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp 1038 (1427)
=.++..||...++++-..=+. +.+-.+++. .+..|+-+.|...+.... ..+..+++.+...
T Consensus 98 inliDtPGh~dF~~ev~~al~-----~~D~allVV-da~eGv~~qT~~~~~~a~----~~~~p~i~viNKi 158 (341)
T d1n0ua2 98 INLIDSPGHVDFSSEVTAALR-----VTDGALVVV-DTIEGVCVQTETVLRQAL----GERIKPVVVINKV 158 (341)
T ss_dssp EEEECCCCCCSSCHHHHHHHH-----TCSEEEEEE-ETTTBSCHHHHHHHHHHH----HTTCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHH-----HCCCEEEEE-ECCCCCCHHHHHHHHHHH----HCCCCEEEEEECC
T ss_conf 999737873889999998875-----237249998-656682046999999998----7699869998772
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.90 E-value=0.29 Score=21.47 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=17.0
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 58759999759999789999
Q 000555 178 KPGRMTLLLGPPASGKSTLL 197 (1427)
Q Consensus 178 ~pG~lt~ilGp~GSGKSTLL 197 (1427)
+.|...+..|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=83.79 E-value=0.16 Score=23.08 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=19.4
Q ss_pred EECCEEEEEECCCCCCHHH-HH-HHHH
Q ss_conf 9587599997599997899-99-9994
Q 000555 177 VKPGRMTLLLGPPASGKST-LL-LALA 201 (1427)
Q Consensus 177 i~pG~lt~ilGp~GSGKST-LL-~~L~ 201 (1427)
+++|+.++|.+|+|||||+ .+ .++.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~ 32 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 646994999979999787999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.18 E-value=0.33 Score=21.11 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=24.1
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895875999975999978999999947989
Q 000555 176 VVKPGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 176 ~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.-.|.-..++.||||+|||.|.++|++++.
T Consensus 119 ~~~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 119 HRYASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 436886388877998508899999999863
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=83.13 E-value=0.53 Score=19.83 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=12.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7599997599997899999994
Q 000555 180 GRMTLLLGPPASGKSTLLLALA 201 (1427)
Q Consensus 180 G~lt~ilGp~GSGKSTLL~~L~ 201 (1427)
|.+.+++||=.|||||-|--..
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRL 23 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 3799999150678999999999
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.60 E-value=0.49 Score=20.06 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=19.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 875999975999978999999947989
Q 000555 179 PGRMTLLLGPPASGKSTLLLALAGKLD 205 (1427)
Q Consensus 179 pG~lt~ilGp~GSGKSTLL~~L~G~l~ 205 (1427)
.|++.+++||=.|||||-|--.+.+..
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~~ 27 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRFQ 27 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 947999991416789999999999999
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=82.45 E-value=0.35 Score=20.99 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=17.5
Q ss_pred ECCEEEEEECCCCCCHHHHHH
Q ss_conf 488399997689999357884
Q 000555 863 SPGVLTALVGSSGAGKTTLMD 883 (1427)
Q Consensus 863 ~~G~~~ai~G~sGaGKTTLl~ 883 (1427)
+.|+...+.|-||.|||||-.
T Consensus 12 ~~~~~alfFGLSGTGKTTLs~ 32 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLST 32 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHHC
T ss_pred CCCCEEEEECCCCCCCCCCEE
T ss_conf 889889997047798560232
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=81.43 E-value=0.2 Score=22.49 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999976899993578840418977
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
-+.|.|+.|.|||||.+.+++...
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.32 E-value=0.43 Score=20.42 Aligned_cols=20 Identities=40% Similarity=0.694 Sum_probs=17.2
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 58759999759999789999
Q 000555 178 KPGRMTLLLGPPASGKSTLL 197 (1427)
Q Consensus 178 ~pG~lt~ilGp~GSGKSTLL 197 (1427)
+.|...+..|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.12 E-value=0.25 Score=21.86 Aligned_cols=24 Identities=46% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999976899993578840418977
Q 000555 867 LTALVGSSGAGKTTLMDVLAGRKT 890 (1427)
Q Consensus 867 ~~ai~G~sGaGKTTLl~~L~g~~~ 890 (1427)
-..|+|++|.|||++..-|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|