Citrus Sinensis ID: 000558

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420---
MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKITVAGIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRRTYRARSSHYNQARVLRFHRFLSAS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccEEEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEEHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccEEEEEEEccccEEEEEEEcccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccEEEcccEEEEccccEEEEEEEcccEEEEEEccHHHHHHHHcHHHHHHHHHHHHHHHcc
cccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHccccccccccEEEccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcHccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHccccccccccccccccHHHHHHHccccccccccccccccEEcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEccccccccccHHccHHHHHHHHHccccccccccccccccEccccccHcccccccccccccccccEEEccEEEEEEEccEEEEEEcccccEEEEcccccHcccHccHHHHHHHHHHHHHHHcc
mkrirddvyggsqfkrplttapprgesyglspqlpgtgagggggagggggagagggsgvggggggmtagmgtsqkltTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGhnnlifgfntflpkgyeitldedeappkktvEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTrflpdtsatslshnipfvrnstqrgnersagipplrqmqmdkhrrrdriatshadrdlsvdrpemddEKLMIKMQKEQRRRAEKEnrdrrnrdqddreiehdnnrdfnlqrfpdkkksikkvegfgansslasyddkdalKITVAGIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYsngiikrndLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSkkslcndghvsrsvkiedkdREHKREMEVTKEKDRYKEKYYAKSIQeldlsncqrctpsyrllpddypipsasqrseLGAQVLNDHWvsvtsgsedysfkhmrrnqyeeslfrceDDRFELDMLLESVSSTAKRAEELLNSINenkitletpfhlkdHFSALNLRCIERLygdhgldvmDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNhyksldhrsfyfkqqdsknlsTKSLVAEIKQFKENKQTEDDVLFVIAAghrqpviphleygysdsnihEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFlepmlsvpsrpsdvegaedagkarhsgknnsassmvesdgspgpdgtvnsrqpissgngdentstELNNLCRTAlsngdtitkenvldsdrvyrddlscSALQLEkeqknvdisdkrsGIIIQVAVGervansdaspaigaenshgrtgsemmsaslrpcdaakddlkheanvnpvppsevtqgcdlakptllengalrdgakginyheksvgptkiekeegelspngdfeednfgvygdaavktlpkakhgvesrqyqsknekglqhqvvggendadaddedsgnasvagddasgsesagdeysreeheeeedverddvdgkaesegeadgmadqhfvggdcmslpmserfllsvkplakfvpatsveerkdcrvfygndDFYVLFRLHQTLYERIQWAKMNTTGaemkrrtskeascSDLYARFMTALYNLldgsidnakfeDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYeesrkpgkqidSVYYENARVLLHEENIYRiqlssspsrlsIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSaflgkkephAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRRTYRARSSHYNQARVLRFHRFLSAS
mkrirddvyggsqfkrplttapprgeSYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVnkikkrfhndeHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDtsatslshnipfvrnstqrgnersagipplrqmqmdkhrrrdriatshadrdlsvdrpemddeklmikmqkeqrrraekenrdrrnrdqddreiehdnnrdfnlqrfpdkkksikkvegfgansslasyddkDALKITVAGIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYsngiikrndlQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKslcndghvsrsvkiedkdrehkremevtkekdrykekYYAKsiqeldlsncqRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTsgsedysfkhmRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFkenkqtedDVLFVIAAghrqpvipHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDagkarhsgknnsassmvesdgspgpdGTVNSRQPISSGNGDENTSTELNNLCRTalsngdtitkenvldsdrvyRDDLSCSalqlekeqknvdisdkrsGIIIQVAVgervansdaspaiGAENSHGRTGSEMMSASLRPCDAAKDDLKHEAnvnpvppsevtqgcDLAKPTLLENgalrdgakginyheksvgptkiekeegelspngdFEEDNFGVYGDAAVKTLPKAKHgvesrqyqsknekglqhQVVGGENDADADDEDSGNasvagddasgsesagdeysreeheeeedverddvdGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKfvpatsveerkdCRVFYGNDDFYVLFRLHQTLYERIQWAKmnttgaemkrrtskeaSCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEyeesrkpgkqiDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNsykityvldtedvfyrrkrrrtyrarsshynqarvlrfhrflsas
MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPgtgagggggagggggagagggsgvggggggmtagmgTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQrrraekenrdrrnrdqddreieHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKITVAGIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVggendadaddedsgnasVAGDDASGSESAGdeysreeheeeedverddvdGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYrrkrrrtyrarSSHYNQARVLRFHRFLSAS
*********************************************************************************LTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDE******KTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDT******************************************************************************************************************************SYDDKDALKITVAGIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCN********************************KYYAKSIQELDLSNCQRCTPSYRLLPDDY***********GAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLE***********LLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFK************VAEI********TEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPM****************************************************************************IT*ENVLDSDRVYRDDLSCSAL***************SGIIIQVAVG************************************************************************************************************GVYGD*************************************************************************************************FVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTT************SCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEES***GKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRRTYRARSSHYNQARVLRFHRF****
********************************************************************************ALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLD*********VEFEEAI******************SFL***************VYSEVASLFEDHADLLEEFTRF************************************************************************************************************************************************IYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDG******************************************************L**SNCQRCTPSYRLLPDDY***********GAQVLNDHWVSVTSGSE********RNQYEESLFRCEDDRFELDMLLESVSSTAKRAEEL********************FSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIK**************************HLEYGYSDSNIHEDLYKLVQY****************KLWTTFLEPMLSVPSRPS**************************************************************************************************************************************************************************************************************************************************************************************************************************************************RFLLSVKP*************KDCRVFYGNDDFYVLFRLHQTLYERIQWA**********************YARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLY***************YYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLN***************************************VQLVNGLECRIACNSYKITYVLDTEDVFY**********************FHRFLS**
MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQM**********IATSHADRDLSVDRPEMDDEKLMIKM*********************DREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKITVAGIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPS**************************************VNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLP*********************QVVGG*********************************************************DGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTT************SCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRRTYRARSSHYNQARVLRFHRFLSAS
**************************************************************************KLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDT********************************************************************************************************************************************IYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENI**F************************************************KSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTED***********QPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPS*************************************************************************************************************************************************************************************************************************************************************************************************************************************************PMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFE*****SAACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRR**********QAR**RF*RFLSA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPExxxxxxxxxxxxxxxxxxxxxxxxxxxxDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKITVAGIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLxxxxxxxxxxxxxxxxxxxxxKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRRTYRARSSHYNQARVLRFHRFLSAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1423 2.2.26 [Sep-21-2011]
Q9LFQ31367 Paired amphipathic helix yes no 0.938 0.976 0.581 0.0
Q9SRH91372 Paired amphipathic helix no no 0.952 0.988 0.588 0.0
O045391326 Paired amphipathic helix no no 0.881 0.946 0.508 0.0
O486861330 Paired amphipathic helix no no 0.891 0.954 0.506 0.0
Q9XIE11162 Paired amphipathic helix no no 0.378 0.462 0.416 1e-128
Q9XIK61173 Paired amphipathic helix no no 0.232 0.282 0.591 1e-111
Q96ST31273 Paired amphipathic helix yes no 0.226 0.252 0.355 8e-55
Q605201274 Paired amphipathic helix yes no 0.226 0.252 0.350 1e-54
Q621411098 Paired amphipathic helix no no 0.237 0.307 0.346 6e-52
O751821162 Paired amphipathic helix no no 0.237 0.290 0.323 9e-48
>sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2 Back     alignment and function desciption
 Score = 1606 bits (4158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 845/1454 (58%), Positives = 1057/1454 (72%), Gaps = 119/1454 (8%)

Query: 1    MKRIRDDVYG-GSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGV 59
            MKRIRDD+Y  GSQFKRPL ++  RGESY  SP   G                       
Sbjct: 1    MKRIRDDIYATGSQFKRPLGSS--RGESYEQSPITGGGSI-------------------- 38

Query: 60   GGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGV 119
                     G   +QKLTT DALTYLKEVK+MFQDQR+KYDMFLEVMKDFKAQ+TDT+GV
Sbjct: 39   -------GEGGINTQKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGV 91

Query: 120  IARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHND 179
            I+RVK+LFKGHNNLIFGFNTFLPKG+EITLD+ EAP KKTVEFEEAI+FVNKIK RF ++
Sbjct: 92   ISRVKELFKGHNNLIFGFNTFLPKGFEITLDDVEAPSKKTVEFEEAISFVNKIKTRFQHN 151

Query: 180  EHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPF 239
            E VYKSFLEILNMYRK++KDI EVY+EV++LFEDH+DLLEEFTRFLPD+ A      +  
Sbjct: 152  ELVYKSFLEILNMYRKDNKDITEVYNEVSTLFEDHSDLLEEFTRFLPDSLAPHTEAQL-- 209

Query: 240  VRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKE 299
            +R+  QR ++R +G P +R+M M+K RRR+R   S  DRD SVDR +++D+K M+KM ++
Sbjct: 210  LRSQAQRYDDRGSGPPLVRRMFMEKDRRRERTVASRGDRDHSVDRSDLNDDKSMVKMHRD 269

Query: 300  QRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDK 359
            QR+R +K+NR+RR+RD +D E E DN     LQ F +K+KS +++EGF A S  AS+ +K
Sbjct: 270  QRKRVDKDNRERRSRDLEDGEAEQDN-----LQHFSEKRKSSRRMEGFEAYSGPASHSEK 324

Query: 360  DALKITVAGIYNQGFIFCDKVKEKLCS-DDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLG 418
            + LK     +YNQ F+FC+KVKE+LCS DDYQAFLKCL+++SNGII+R DLQNLV+D+LG
Sbjct: 325  NNLK----SMYNQAFLFCEKVKERLCSQDDYQAFLKCLNMFSNGIIQRKDLQNLVSDVLG 380

Query: 419  KYMDLMDEFNHFFERCENIDGF--LAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVT 476
            K+ DLMDEFN FFERCE+IDGF  LAGVMSKKSL ++ ++SRSVK E+KDREHKR++E  
Sbjct: 381  KFPDLMDEFNQFFERCESIDGFQHLAGVMSKKSLGSEENLSRSVKGEEKDREHKRDVEAA 440

Query: 477  KEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSV 536
            KEK+R K+KY  KSIQELDLS+C+RCTPSYRLLP DYPIPS   R + GA VLNDHWVSV
Sbjct: 441  KEKERSKDKYMGKSIQELDLSDCERCTPSYRLLPPDYPIPSVRHRQKSGAAVLNDHWVSV 500

Query: 537  TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLE 596
            TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESV S AK AEELLN I + KI+ E
Sbjct: 501  TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVGSAAKSAEELLNIIIDKKISFE 560

Query: 597  TPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSD 656
              F ++DHF+ALNLRCIERLYGDHGLDV D++RKNPA ALPV+LTRLKQKQ+EWTKCR  
Sbjct: 561  GSFRIEDHFTALNLRCIERLYGDHGLDVTDLIRKNPAAALPVILTRLKQKQDEWTKCREG 620

Query: 657  FNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAA 716
            FN VWA++YAKNHYKSLDHRSFYFKQQDSKNLS K+LV+E+K  KE  Q EDDV+  I+A
Sbjct: 621  FNVVWADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVSEVKDLKEKSQKEDDVVLSISA 680

Query: 717  GHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPS 776
            G+RQP+IPHLEY Y D  IHEDL+KLVQ+SCEE+CSTK+Q  K +KLW  FLE ML V  
Sbjct: 681  GYRQPIIPHLEYDYLDRAIHEDLFKLVQFSCEEICSTKEQTGKVLKLWANFLELMLDVAP 740

Query: 777  RPSDVEGAEDAGKARH-----SGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTS 831
            R    +  ED  + +H     SG+ N +S  +          ++ SRQ   + NGD + S
Sbjct: 741  RAKGSDSVEDVVETQHQRAFTSGEANESSDAI----------SLVSRQLKFATNGDVHAS 790

Query: 832  TELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISD---KRSGII 888
            + ++    T L N D+  KEN+ D D   +D  +C+    EK QK+ +I +   KRSG  
Sbjct: 791  SGVSKHGETGLLNRDSSGKENLKDGDLANKDVATCA----EKPQKDQEIGNGAAKRSG-- 844

Query: 889  IQVAVGERVANSDASPAIGAENSHGRTGSEMMSASL----RPCDAAKDDLKHEANVNPVP 944
                V ERVA S +S   G EN++G+ GS   S S     +P +A          ++ V 
Sbjct: 845  ---DVDERVATSSSSFPSGVENNNGKVGSRDSSGSRGILSKPSEA----------IDKVD 891

Query: 945  PSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGV 1004
              + TQG D+ +  +L NG   D +K  + +++S GP+KIEKEEGELSP GD  EDNF V
Sbjct: 892  SIQHTQGVDIGRIIVLGNGLQSDTSKANSNYDESGGPSKIEKEEGELSPVGD-SEDNFVV 950

Query: 1005 YGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGS 1064
            Y D  +K   K +H VE+     ++                       +AS AG+DASG+
Sbjct: 951  YEDRELKATAKTEHSVEAEGENDEDADDEDGD----------------DASEAGEDASGT 994

Query: 1065 ESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVK 1124
            ES GDE S++++  EE+ E D++DGKAESEGEA+GM + H +    +  P SER LLSVK
Sbjct: 995  ESIGDECSQDDNGVEEEGEHDEIDGKAESEGEAEGM-ESHLIEDKGL-FPSSERVLLSVK 1052

Query: 1125 PLAKFVPATSV--EERKDCRVFYGNDDFYVLFRLHQT------------LYERIQWAKMN 1170
            PL+K + A ++  E++KD RVFYGNDDFYVLFRLH+             LYERI  AK  
Sbjct: 1053 PLSKHIAAAALVDEKKKDSRVFYGNDDFYVLFRLHRVSAIDSYDLLSHILYERILSAKTY 1112

Query: 1171 TTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDK 1230
             +G+EMK R +K+    D YARFM AL++LL+GS +N+KFEDECRAIIGNQSYVLFTL+K
Sbjct: 1113 CSGSEMKLRNTKDTCSPDPYARFMNALFSLLNGSAENSKFEDECRAIIGNQSYVLFTLEK 1172

Query: 1231 LLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLS 1290
            L+Y+L KQLQ V AD+MDNKL+QLYEYE SR+PG+  DSVYYENAR+LLHEENIYR++ S
Sbjct: 1173 LIYKLVKQLQAVVADDMDNKLLQLYEYENSRRPGRVFDSVYYENARILLHEENIYRLECS 1232

Query: 1291 SSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFE 1350
            SSPSRLSIQLMDN+IEKP+A+AV+M+P F +YL N+FLS   GKKE   +VL+RN R + 
Sbjct: 1233 SSPSRLSIQLMDNIIEKPDAYAVSMEPTFTSYLQNEFLSNSSGKKELQDIVLQRNMRGYN 1292

Query: 1351 GLDELSAACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRRTYRARS-SHYN 1409
            GLD+L+ AC AMEGVQ++NGLEC+++C+SYKI+YVLDTED F+R+K+++     S +  +
Sbjct: 1293 GLDDLAVACKAMEGVQVINGLECKMSCSSYKISYVLDTEDFFHRKKKQKKSNNLSLAKLS 1352

Query: 1410 QARVLRFHRFLSAS 1423
            Q R+ RFH+FLSAS
Sbjct: 1353 QNRIARFHKFLSAS 1366
Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRH9|SNL1_ARATH Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=1 SV=2 Back     alignment and function description
>sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3 Back     alignment and function description
>sp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana GN=SNL3 PE=1 SV=3 Back     alignment and function description
>sp|Q9XIE1|SNL5_ARATH Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana GN=SNL5 PE=2 SV=3 Back     alignment and function description
>sp|Q9XIK6|SNL6_ARATH Paired amphipathic helix protein Sin3-like 6 OS=Arabidopsis thaliana GN=SNL6 PE=3 SV=2 Back     alignment and function description
>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2 Back     alignment and function description
>sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1 SV=3 Back     alignment and function description
>sp|Q62141|SIN3B_MOUSE Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b PE=1 SV=2 Back     alignment and function description
>sp|O75182|SIN3B_HUMAN Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1423
3594887651395 PREDICTED: paired amphipathic helix prot 0.972 0.992 0.668 0.0
2960877591359 unnamed protein product [Vitis vinifera] 0.947 0.991 0.657 0.0
2555527581289 conserved hypothetical protein [Ricinus 0.895 0.988 0.698 0.0
3565509371371 PREDICTED: paired amphipathic helix prot 0.938 0.973 0.665 0.0
3565734261383 PREDICTED: paired amphipathic helix prot 0.959 0.987 0.664 0.0
2978328041378 hypothetical protein ARALYDRAFT_477381 [ 0.952 0.983 0.597 0.0
3341876891355 paired amphipathic helix protein Sin3-li 0.938 0.985 0.585 0.0
2978116351372 hypothetical protein ARALYDRAFT_488346 [ 0.945 0.980 0.590 0.0
1453580421367 paired amphipathic helix protein Sin3-li 0.938 0.976 0.581 0.0
3594733141421 PREDICTED: paired amphipathic helix prot 0.945 0.947 0.583 0.0
>gi|359488765|ref|XP_002281791.2| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1810 bits (4689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 959/1434 (66%), Positives = 1128/1434 (78%), Gaps = 50/1434 (3%)

Query: 1    MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVG 60
            MKR+RDD Y GSQFKRP  ++  RG+SYG  PQ+PG G GGGGG                
Sbjct: 1    MKRLRDDGYVGSQFKRPYGSS--RGDSYG-QPQIPGGGGGGGGGG--------------- 42

Query: 61   GGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVI 120
                    G G+  KLTT+DALTYLKEVK+MFQDQREKYD FLEVMKDFKAQRTDTAGVI
Sbjct: 43   -----GGGGGGSMPKLTTTDALTYLKEVKEMFQDQREKYDTFLEVMKDFKAQRTDTAGVI 97

Query: 121  ARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDE 180
            ARVK+LFKGHNNLIFGFNTFLPKGYEITL EDE PPKKTVEFEEAI FVNKIKKRF ND+
Sbjct: 98   ARVKELFKGHNNLIFGFNTFLPKGYEITLPEDEPPPKKTVEFEEAINFVNKIKKRFQNDD 157

Query: 181  HVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFV 240
            HVYKSFL+ILNMYR+E+KDI+EVY EVA LF DH DLLEEF RFLP++SA   + ++P+ 
Sbjct: 158  HVYKSFLDILNMYRRENKDIHEVYREVAVLFSDHKDLLEEFVRFLPESSAMHSAQHLPYG 217

Query: 241  RNSTQRGNERSAGIPPLRQMQMDKHR-RRDRIATSHADRDLSVDRPEMDDEKLMIKMQKE 299
            RN+ QR +ER++  P LRQM +DK R  RD+I  SHADRD S+ R ++DD+K M+K+ KE
Sbjct: 218  RNTIQRYDERNSSTPTLRQMHVDKQRCWRDKIIPSHADRDSSIYRTDLDDDKAMMKIHKE 277

Query: 300  QRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDK 359
            Q+RR EKENRDRRNRDQDDRE  H+NNRDFNLQR P+K+KS +KVEGFGAN  LASYDDK
Sbjct: 278  QKRRTEKENRDRRNRDQDDREPSHENNRDFNLQRLPEKRKSSRKVEGFGANPILASYDDK 337

Query: 360  DALKITVAGIYNQGFIFCDKVKEKLCS-DDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLG 418
            DALK     + NQ FIFC+KVKEKLCS DDYQAFLKCLHIYS  II R++LQ LV DLLG
Sbjct: 338  DALK----SMCNQEFIFCEKVKEKLCSMDDYQAFLKCLHIYSKEIISRSELQTLVADLLG 393

Query: 419  KYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKE 478
            KY DLMD FN F ERCENIDGFLAGVM+KKSL ++GH+SRS++ E+KD+E KREME  KE
Sbjct: 394  KYPDLMDGFNEFLERCENIDGFLAGVMNKKSLWDEGHLSRSMRAEEKDKEQKREMEGAKE 453

Query: 479  KDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTS 538
            KDR +EKY  KSIQELDLSNC+RCTPSYRLLP+DYPI  A +RSELGAQVLND WVSVTS
Sbjct: 454  KDRCREKYMGKSIQELDLSNCERCTPSYRLLPEDYPIAIAKERSELGAQVLNDQWVSVTS 513

Query: 539  GSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETP 598
            GSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESV+S AK AE+LLNSI++N +   +P
Sbjct: 514  GSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVTSAAKHAEDLLNSISDNSVG--SP 571

Query: 599  FHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFN 658
              ++ H + LNLRCI+RLYGDH LD +D LRKN ++ALPV+L+RLKQK EEW++CRSDFN
Sbjct: 572  IQIEGHLTVLNLRCIDRLYGDHALDALDTLRKNTSLALPVILSRLKQKHEEWSRCRSDFN 631

Query: 659  KVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGH 718
            KVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIK+ KE KQ EDD+L  IAAG+
Sbjct: 632  KVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKELKEEKQNEDDMLLAIAAGN 691

Query: 719  RQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRP 778
            R+ V P+LE+ YSD NIH+DLYKLVQYSCEE+C+T +QLNK M+LWTTFLEPML VPSR 
Sbjct: 692  RRFVNPNLEFEYSDVNIHDDLYKLVQYSCEEVCTTNEQLNKVMRLWTTFLEPMLGVPSRV 751

Query: 779  SDVEGAEDAGKARHSGKNNSASSMVESDGSPGPDGTV-NSRQPISSGNGDENTSTELNNL 837
               EGAED  KARH    +SASS  E DGSPG +  V NS+QP  + NGDEN   E  N 
Sbjct: 752  DREEGAEDVAKARHGAVKSSASSTGERDGSPGAEAAVMNSKQPNLASNGDENAIPESANS 811

Query: 838  CRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERV 897
            CR +L NGD++ K++  DS  + +DD      +LEKE KNV  ++K SG  IQV  GE++
Sbjct: 812  CRASLVNGDSLPKDD-HDSSHISKDD----PPRLEKELKNVAATEKISGFNIQVGSGEQL 866

Query: 898  ANSDASPAIGAENSHGRTGSEMMSASL----RPCDAAKDDLKHEANVNPVPPSEVTQGCD 953
             +S+AS A GAEN+ GR   E+MS  +    RP + A +    EA+ +       ++G D
Sbjct: 867  IDSNASLATGAENNLGRAHMEVMSGHVSTPSRPGNVAIE----EAHEHKPGFDASSEGGD 922

Query: 954  LAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTL 1013
            + +  +  NG L +G K   YH +SVGP+KIEKEEGELSPNGDFEEDNF VYGDA+ + +
Sbjct: 923  VMRTVISANGVLSEGTKLNKYHAESVGPSKIEKEEGELSPNGDFEEDNFVVYGDASTQAV 982

Query: 1014 PKAKHGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAGDEYSR 1073
            P AKH  E RQ+Q+ + +    QV GGEN ADADDEDS N S AG+D S SESAGDE SR
Sbjct: 983  PLAKHSSERRQFQAGDGQERDCQVAGGENGADADDEDSENVSEAGEDVSASESAGDECSR 1042

Query: 1074 EEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPAT 1133
             E EEEED E D++DGKAESEGEADG+AD +FVGG+ + LP+SERFL +VKPLAK V A+
Sbjct: 1043 GEQEEEEDAEHDELDGKAESEGEADGVADANFVGGNGVILPLSERFLPTVKPLAKHV-AS 1101

Query: 1134 SV--EERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYA 1191
            S+  +E+ D RVFYGND FYVLFRLH+ LYERI  AK+N+T AEMK R SK+ +  D Y+
Sbjct: 1102 SLHDKEKNDSRVFYGNDTFYVLFRLHRVLYERILSAKVNSTSAEMKWRASKDTNPPDFYS 1161

Query: 1192 RFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKL 1251
            RFM+ALYNLLDGS DNAKFED+CRAI+GNQSYVLFTLDKL+Y+L KQLQTVA DEMDNKL
Sbjct: 1162 RFMSALYNLLDGSSDNAKFEDDCRAILGNQSYVLFTLDKLIYKLVKQLQTVATDEMDNKL 1221

Query: 1252 IQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAF 1311
            +QLY+YE+SR+ GK +DSVY+ENA V LH++NIYR + SSSPSRLSIQLMD+  EKPE  
Sbjct: 1222 LQLYDYEKSRRSGKFVDSVYHENACVFLHDDNIYRFEYSSSPSRLSIQLMDSGSEKPEVV 1281

Query: 1312 AVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGL 1371
            AV+MDPNFAAYL NDFLS+   KKEP  ++L+RNK ++ GLD+LSA C+AME V LVNGL
Sbjct: 1282 AVSMDPNFAAYLHNDFLSSRPSKKEPLGIMLQRNKHKYGGLDDLSATCLAMEDVHLVNGL 1341

Query: 1372 ECRIACNSYKITYVLDTEDVFYRR--KRRRTYRARSSHYNQARVLRFHRFLSAS 1423
            EC+IAC S KI+YVLDTED F+R   KRR+   +  S  N ARV RFHRFLSAS
Sbjct: 1342 ECKIACTSSKISYVLDTEDYFFRTRWKRRKLTGSEVSQRNWARVERFHRFLSAS 1395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087759|emb|CBI35015.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552758|ref|XP_002517422.1| conserved hypothetical protein [Ricinus communis] gi|223543433|gb|EEF44964.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356550937|ref|XP_003543838.1| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356573426|ref|XP_003554862.1| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|297832804|ref|XP_002884284.1| hypothetical protein ARALYDRAFT_477381 [Arabidopsis lyrata subsp. lyrata] gi|297330124|gb|EFH60543.1| hypothetical protein ARALYDRAFT_477381 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334187689|ref|NP_001190311.1| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] gi|332004723|gb|AED92106.1| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297811635|ref|XP_002873701.1| hypothetical protein ARALYDRAFT_488346 [Arabidopsis lyrata subsp. lyrata] gi|297319538|gb|EFH49960.1| hypothetical protein ARALYDRAFT_488346 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145358042|ref|NP_197006.2| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] gi|296439819|sp|Q9LFQ3.2|SNL2_ARATH RecName: Full=Paired amphipathic helix protein Sin3-like 2 gi|332004722|gb|AED92105.1| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359473314|ref|XP_002267856.2| PREDICTED: paired amphipathic helix protein Sin3-like 4-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1423
TAIR|locus:21002771372 SNL1 "AT3G01320" [Arabidopsis 0.882 0.915 0.579 0.0
TAIR|locus:21478451367 SNL2 "AT5G15020" [Arabidopsis 0.593 0.617 0.609 2.2e-284
DICTYBASE|DDB_G02810451934 DDB_G0281045 "paired amphipath 0.232 0.171 0.365 3.2e-109
RGD|13115981282 Sin3a "SIN3 transcription regu 0.208 0.230 0.367 4.1e-101
UNIPROTKB|F1SJ691227 SIN3A "Uncharacterized protein 0.208 0.241 0.367 2.5e-98
UNIPROTKB|F1MTR31274 SIN3A "Uncharacterized protein 0.208 0.232 0.367 5.1e-98
UNIPROTKB|J9P8L11274 SIN3A "Uncharacterized protein 0.208 0.232 0.367 1.5e-97
ZFIN|ZDB-GENE-070620-31276 sin3aa "SIN3 homolog A, transc 0.219 0.245 0.355 3.9e-97
UNIPROTKB|Q96ST31273 SIN3A "Paired amphipathic heli 0.208 0.232 0.367 1.4e-96
MGI|MGI:1071571274 Sin3a "transcriptional regulat 0.208 0.232 0.367 1.8e-96
TAIR|locus:2100277 SNL1 "AT3G01320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3619 (1279.0 bits), Expect = 0., Sum P(2) = 0.
 Identities = 757/1307 (57%), Positives = 925/1307 (70%)

Query:    73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNN 132
             SQKLTT+DAL+YL+EVK+MFQDQREKYD FLEVMKDFKAQRTDT GVIARVK+LFKGHNN
Sbjct:    50 SQKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNN 109

Query:   133 LIFGFNTFLPKGYEITL-DEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILN 191
             LI+GFNTFLPKGYEITL +ED+A PKKTVEFE+AI FVNKIK RF +DEHVYKSFLEILN
Sbjct:   110 LIYGFNTFLPKGYEITLIEEDDALPKKTVEFEQAINFVNKIKMRFKHDEHVYKSFLEILN 169

Query:   192 MYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIP-FVRNSTQRGNER 250
             MYRKE+K+I EVY+EV+ LF+ H DLLE+FTRFLP   A+  SH+     R+  Q+ ++R
Sbjct:   170 MYRKENKEIKEVYNEVSILFQGHLDLLEQFTRFLP---ASLPSHSAAQHSRSQAQQYSDR 226

Query:   251 SAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQXXXXXXXXXX 310
              +  P L QMQ++K RRR+R      D   SV+R +++D+K M+K+Q+EQ          
Sbjct:   227 GSDPPLLHQMQVEKERRRERAVALRGD--YSVERYDLNDDKTMVKIQREQRKRLDKENRA 284

Query:   311 XXXXXXXXXXXXHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKITVAGIY 370
                          DN     L  FP+K+KS ++ E   A S  AS+ +KD LK     +Y
Sbjct:   285 RRGRDLDDREAGQDN-----LHHFPEKRKSSRRAEALEAYSGSASHSEKDNLK----SMY 335

Query:   371 NQGFIFCDKVKEKLCS-DDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNH 429
              Q F+FC+KVK++LCS DDYQ FLKCL+I+SNGII+R DLQNLV+DLLGK+ DLMDEFN 
Sbjct:   336 KQAFVFCEKVKDRLCSQDDYQTFLKCLNIFSNGIIQRKDLQNLVSDLLGKFPDLMDEFNQ 395

Query:   430 FFERCENI-DGF--LAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKY 486
             FFERCE+I DGF  LAGVMSKK   ++  +SR +K+E+K+ EHK E+E  KE ++ K++Y
Sbjct:   396 FFERCESITDGFQRLAGVMSKKLFSSEEQLSRPMKVEEKESEHKPELEAVKETEQCKKEY 455

Query:   487 YAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFK 546
               KSIQELDLS+C+ CTPSYRLLP DYPIP ASQRSELGA+VLNDHWVSVTSGSEDYSFK
Sbjct:   456 MGKSIQELDLSDCECCTPSYRLLPADYPIPIASQRSELGAEVLNDHWVSVTSGSEDYSFK 515

Query:   547 HMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFS 606
             HMRRNQYEESLFRCEDDRFELDMLLESVSS A+ AE LLN I E KI+    F ++DHF+
Sbjct:   516 HMRRNQYEESLFRCEDDRFELDMLLESVSSAARSAESLLNIITEKKISFSGSFRIEDHFT 575

Query:   607 ALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYA 666
             ALNLRCIERLYGDHGLDV+DIL KNPA ALPV+LTRLKQKQ EW KCR DF+KVWA +YA
Sbjct:   576 ALNLRCIERLYGDHGLDVIDILNKNPATALPVILTRLKQKQGEWKKCRDDFDKVWANVYA 635

Query:   667 KNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHL 726
             KNHYKSLDHRSFYFKQQDSKNLS KSL+AEIK+ KE  Q +DDVL  I+AG+RQP+ P+L
Sbjct:   636 KNHYKSLDHRSFYFKQQDSKNLSAKSLLAEIKELKEKSQNDDDVLLSISAGYRQPINPNL 695

Query:   727 EYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAED 786
             EY Y +  IHED++K+VQ+SCEE+CSTK+QL+K ++LW  FLE +L VP R    +  ED
Sbjct:   696 EYEYLNRAIHEDMFKVVQFSCEELCSTKEQLSKVLRLWENFLEAVLGVPPRAKGTDLVED 755

Query:   787 AG-KARHSGKNNSASSMVESDGSPGPD-GTVNSRQPISSGNGDENTSTELNNLCRTALSN 844
                  +    N+S S   E+  S G D   + SR+  S+ NGDEN+S+         L N
Sbjct:   756 VVINPKTLDVNHSTSPNGEAAVSSGGDTARLASRKLKSAANGDENSSSGTFKH-GIGLLN 814

Query:   845 GDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASP 904
              D+  KEN+ D +   RD ++CSA++ +KEQ+  + ++KR G  I + + ER A S  S 
Sbjct:   815 KDSTGKENLEDVEIANRDGVACSAVKPQKEQETGNEAEKRFGKPIPMDISERAAISSISI 874

Query:   905 AIGAENSHGRTGSEMMSAS----LRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLL 960
               GAEN+H   G E++  +     +P D   D + H+  V+ +     TQG D+    +L
Sbjct:   875 PSGAENNHCVVGKEVLPGAHEIQAKPSDTLTD-IHHD--VDSIETVHSTQGGDVGNSIVL 931

Query:   961 ENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGV 1020
              NG   D +KG    +   GP++ EKEEGELSPNGDFE DNFGVY D          HGV
Sbjct:   932 ANGLRSDSSKGTRNSDDPEGPSRNEKEEGELSPNGDFE-DNFGVYKD----------HGV 980

Query:  1021 ESRQYQSKNEKGLQHQVVXXXXXXXXXXXXXXXXXVAGDDASGSESAGXXXXXXXXXXXX 1080
             +S    SK E   + +V                   A + ASG+ES G            
Sbjct:   981 KST---SKPENSAEAEVEADAEVENEDDADDVDSENASE-ASGTESGGDVCSQDEDREEE 1036

Query:  1081 XXXXXXXXGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEER-K 1139
                     GKAESEGEA+GM D H + G+   LP SER LLSV+PL+K V A   +ER K
Sbjct:  1037 NGEHDEIDGKAESEGEAEGM-DPHLLEGESELLPQSERVLLSVRPLSKHVAAVLCDERTK 1095

Query:  1140 DCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYN 1199
             D +VFYGNDDFYVLFRLHQ LYERI +AK N +G E+K +  K+ +  D YARFM  LY 
Sbjct:  1096 DLQVFYGNDDFYVLFRLHQILYERILYAKRNCSGGELKSKNLKDTNAGDPYARFMRVLYG 1155

Query:  1200 LLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEE 1259
             LLDGS +N KFEDECRAIIGNQSYVLFTLDKL+YRL KQLQ + ADEMDNKL+QLYEYE+
Sbjct:  1156 LLDGSAENTKFEDECRAIIGNQSYVLFTLDKLIYRLVKQLQAIVADEMDNKLLQLYEYEK 1215

Query:  1260 SRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNF 1319
             SRKPG+ IDSVYYEN RVL+HEENIYR++ SS PSRLSIQLMDN+IEKPEA+AV+MDP F
Sbjct:  1216 SRKPGRVIDSVYYENVRVLVHEENIYRLECSSLPSRLSIQLMDNIIEKPEAYAVSMDPTF 1275

Query:  1320 AAYLLNDFLSAFLGKKEP-HAVVLRRNKRRFEGLDELSAACMAMEGV 1365
             A+Y+  + LS   GKKE  H +VL+RN     GL +L  A   +E V
Sbjct:  1276 ASYMQTELLSVSSGKKEEGHDIVLQRN---LTGLYDLCKAMEGVEVV 1319
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0007346 "regulation of mitotic cell cycle" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0048440 "carpel development" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2147845 SNL2 "AT5G15020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281045 DDB_G0281045 "paired amphipathic helix (PAH) containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1311598 Sin3a "SIN3 transcription regulator homolog A (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJ69 SIN3A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MTR3 SIN3A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P8L1 SIN3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070620-3 sin3aa "SIN3 homolog A, transcription regulator (yeast) a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96ST3 SIN3A "Paired amphipathic helix protein Sin3a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107157 Sin3a "transcriptional regulator, SIN3A (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LFQ3SNL2_ARATHNo assigned EC number0.58110.93810.9765yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020851001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (1377 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1423
pfam08295101 pfam08295, Sin3_corepress, Sin3 family co-represso 8e-50
smart00761102 smart00761, HDAC_interact, Histone deacetylase (HD 1e-45
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 3e-45
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 6e-36
pfam0267147 pfam02671, PAH, Paired amphipathic helix repeat 1e-16
pfam0267147 pfam02671, PAH, Paired amphipathic helix repeat 2e-16
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 1e-10
pfam0267147 pfam02671, PAH, Paired amphipathic helix repeat 2e-10
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 4e-07
pfam0717291 pfam07172, GRP, Glycine rich protein family 1e-06
pfam0717291 pfam07172, GRP, Glycine rich protein family 3e-06
pfam0717291 pfam07172, GRP, Glycine rich protein family 4e-06
pfam1348846 pfam13488, Gly-zipper_Omp, Glycine zipper 1e-05
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 2e-05
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-05
pfam0717291 pfam07172, GRP, Glycine rich protein family 3e-05
pfam1043965 pfam10439, Bacteriocin_IIc, Bacteriocin class II w 3e-05
pfam1043965 pfam10439, Bacteriocin_IIc, Bacteriocin class II w 4e-05
pfam1344145 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper 5e-05
pfam12810248 pfam12810, Gly_rich, Glycine rich protein 5e-05
pfam1043965 pfam10439, Bacteriocin_IIc, Bacteriocin class II w 7e-05
PLN03138796 PLN03138, PLN03138, Protein TOC75; Provisional 8e-05
pfam13436116 pfam13436, Gly-zipper_OmpA, Glycine-zipper contain 9e-05
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 1e-04
pfam1344145 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper 1e-04
PLN03138796 PLN03138, PLN03138, Protein TOC75; Provisional 1e-04
PHA00370297 PHA00370, III, attachment protein 1e-04
pfam0717291 pfam07172, GRP, Glycine rich protein family 2e-04
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 2e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-04
pfam02084239 pfam02084, Bindin, Bindin 2e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 3e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 3e-04
pfam1043965 pfam10439, Bacteriocin_IIc, Bacteriocin class II w 3e-04
pfam12810248 pfam12810, Gly_rich, Glycine rich protein 3e-04
PHA00370297 PHA00370, III, attachment protein 3e-04
pfam0543342 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom 3e-04
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 3e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 4e-04
pfam1043965 pfam10439, Bacteriocin_IIc, Bacteriocin class II w 4e-04
PLN03138796 PLN03138, PLN03138, Protein TOC75; Provisional 4e-04
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 6e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 6e-04
pfam1344145 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper 6e-04
pfam0717291 pfam07172, GRP, Glycine rich protein family 7e-04
pfam0717291 pfam07172, GRP, Glycine rich protein family 7e-04
PRK13875440 PRK13875, PRK13875, conjugal transfer protein TrbL 8e-04
PRK07772186 PRK07772, PRK07772, single-stranded DNA-binding pr 9e-04
pfam0717291 pfam07172, GRP, Glycine rich protein family 0.001
pfam13436116 pfam13436, Gly-zipper_OmpA, Glycine-zipper contain 0.001
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 0.002
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 0.002
pfam0543342 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom 0.002
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.002
PRK13875440 PRK13875, PRK13875, conjugal transfer protein TrbL 0.002
PRK07772186 PRK07772, PRK07772, single-stranded DNA-binding pr 0.002
pfam0957981 pfam09579, Spore_YtfJ, Sporulation protein YtfJ (S 0.002
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 0.003
pfam1344145 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper 0.003
pfam0543342 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom 0.003
PRK07772186 PRK07772, PRK07772, single-stranded DNA-binding pr 0.003
PRK07772186 PRK07772, PRK07772, single-stranded DNA-binding pr 0.003
pfam1096191 pfam10961, DUF2763, Protein of unknown function (D 0.003
pfam1096191 pfam10961, DUF2763, Protein of unknown function (D 0.003
pfam0543342 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom 0.004
PRK13875440 PRK13875, PRK13875, conjugal transfer protein TrbL 0.004
COG4371334 COG4371, COG4371, Predicted membrane protein [Func 0.004
pfam07466280 pfam07466, DUF1517, Protein of unknown function (D 0.004
>gnl|CDD|191990 pfam08295, Sin3_corepress, Sin3 family co-repressor Back     alignment and domain information 
 Score =  170 bits (434), Expect = 8e-50
 Identities = 58/96 (60%), Positives = 68/96 (70%)

Query: 498 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESL 557
           NC+R  PSYRLLP   P P  S R EL  +VLND WVSV + SED  FK  R+NQYEE+L
Sbjct: 1   NCERLGPSYRLLPKSEPNPPCSGRDELCKEVLNDTWVSVPTWSEDSGFKAHRKNQYEEAL 60

Query: 558 FRCEDDRFELDMLLESVSSTAKRAEELLNSINENKI 593
           FRCED+RFELDM++ES  ST K  EELLN I++   
Sbjct: 61  FRCEDERFELDMVIESNRSTIKLLEELLNKISDMSD 96

This domain is found on transcriptional regulators. It forms interactions with histone deacetylases. Length = 101
>gnl|CDD|214808 smart00761, HDAC_interact, Histone deacetylase (HDAC) interacting Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat Back     alignment and domain information
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|205666 pfam13488, Gly-zipper_Omp, Glycine zipper Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide Back     alignment and domain information
>gnl|CDD|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide Back     alignment and domain information
>gnl|CDD|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper Back     alignment and domain information
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein Back     alignment and domain information
>gnl|CDD|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide Back     alignment and domain information
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional Back     alignment and domain information
>gnl|CDD|222127 pfam13436, Gly-zipper_OmpA, Glycine-zipper containing OmpA-like membrane domain Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper Back     alignment and domain information
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional Back     alignment and domain information
>gnl|CDD|164795 PHA00370, III, attachment protein Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|216868 pfam02084, Bindin, Bindin Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide Back     alignment and domain information
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein Back     alignment and domain information
>gnl|CDD|164795 PHA00370, III, attachment protein Back     alignment and domain information
>gnl|CDD|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide Back     alignment and domain information
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional Back     alignment and domain information
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|222127 pfam13436, Gly-zipper_OmpA, Glycine-zipper containing OmpA-like membrane domain Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional Back     alignment and domain information
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|204270 pfam09579, Spore_YtfJ, Sporulation protein YtfJ (Spore_YtfJ) Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper Back     alignment and domain information
>gnl|CDD|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain Back     alignment and domain information
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|220915 pfam10961, DUF2763, Protein of unknown function (DUF2763) Back     alignment and domain information
>gnl|CDD|220915 pfam10961, DUF2763, Protein of unknown function (DUF2763) Back     alignment and domain information
>gnl|CDD|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain Back     alignment and domain information
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional Back     alignment and domain information
>gnl|CDD|226808 COG4371, COG4371, Predicted membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1423
COG56021163 SIN3 Histone deacetylase complex, SIN3 component [ 100.0
smart00761102 HDAC_interact Histone deacetylase (HDAC) interacti 100.0
PF08295101 Sin3_corepress: Sin3 family co-repressor; InterPro 100.0
KOG4204231 consensus Histone deacetylase complex, SIN3 compon 100.0
KOG4204231 consensus Histone deacetylase complex, SIN3 compon 99.84
COG56021163 SIN3 Histone deacetylase complex, SIN3 component [ 99.84
PF0267147 PAH: Paired amphipathic helix repeat; InterPro: IP 99.3
PF0267147 PAH: Paired amphipathic helix repeat; InterPro: IP 99.23
PTZ00146293 fibrillarin; Provisional 95.8
KOG3973465 consensus Uncharacterized conserved glycine-rich p 94.97
PLN03138796 Protein TOC75; Provisional 94.14
KOG3915641 consensus Transcription regulator dachshund, conta 93.77
PLN03138796 Protein TOC75; Provisional 93.18
COG4371334 Predicted membrane protein [Function unknown] 93.13
KOG3915641 consensus Transcription regulator dachshund, conta 92.42
PHA00370297 III attachment protein 90.9
PHA00370297 III attachment protein 87.5
COG4371334 Predicted membrane protein [Function unknown] 86.72
KOG1596317 consensus Fibrillarin and related nucleolar RNA-bi 84.64
KOG3074263 consensus Transcriptional regulator of the PUR fam 82.78
PF04285421 DUF444: Protein of unknown function (DUF444); Inte 80.18
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-155  Score=1377.09  Aligned_cols=941  Identities=29%  Similarity=0.443  Sum_probs=690.7

Q ss_pred             CCCCCccccchhhhHHHHHHhhhcCChHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccChhhhhhhhccCCccccccC
Q 000558           70 MGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITL  149 (1423)
Q Consensus        70 ~g~~~~~~~~dAl~YL~~VK~~F~d~p~~Y~eFL~IMkdfk~~~id~~gVi~rV~~Lf~ghpdLI~GFN~FLP~gy~I~l  149 (1423)
                      ....++|+|.||++||++||.+|..+|++|+.||+||||||+|.||++|||+||+.||+|+|+||+|||+|||+||+|++
T Consensus       120 ~~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie~  199 (1163)
T COG5602         120 RIPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIEG  199 (1163)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEEE
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCC--------------------------------------------CC-------------CCCcchhHHHHHHHHHH
Q 000558          150 DEDE--------------------------------------------AP-------------PKKTVEFEEAITFVNKI  172 (1423)
Q Consensus       150 ~~de--------------------------------------------~p-------------p~~~vef~~Ai~fvnKV  172 (1423)
                      +.+.                                            ||             ++..+.|++||.|||+|
T Consensus       200 S~~~~~~s~l~vtTP~gp~s~~pv~ss~y~a~~n~~qrts~p~lps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vnkV  279 (1163)
T COG5602         200 SLPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVNKV  279 (1163)
T ss_pred             ecCCCCCCeeeecCCCCCCCCCCcccccccccccccccccCCCCccccCCCCCCcccCCcccccccceehhHHHHHHHHH
Confidence            4210                                            10             02336799999999999


Q ss_pred             HHHcCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCcCCCCccccCCcccCCCCCC
Q 000558          173 KKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSA  252 (1423)
Q Consensus       173 K~RF~~~P~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hpDLL~eF~~FLP~~~~~~~~~~~~~~~~~n~~~~~r~~  252 (1423)
                      |.||+++|+.|..||++|++|++.++++++||.+|+.||+++|||+++|..|||+....+.+..+..   +.     .+.
T Consensus       280 K~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~~a~q~~a~a---q~-----p~~  351 (1163)
T COG5602         280 KVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQSTANA---QK-----PSK  351 (1163)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCcccccccccccccc---CC-----Ccc
Confidence            9999999999999999999999999999999999999999999999999999999865442111100   00     134


Q ss_pred             CCCCcccchhhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccccccccc
Q 000558          253 GIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQ  332 (1423)
Q Consensus       253 ~~P~~~~~~~~K~~~~~r~~~s~~~~~~sv~rp~~~~d~~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~q  332 (1423)
                      .+||.+.+..++.- +.++.+++..     ..|..     .           .+-.+   .|  .      +-..++..+
T Consensus       352 ~lPPiG~Fs~p~~a-~~~~~ps~~~-----~~p~~-----~-----------~~~~~---~r--~------d~~~S~s~~  398 (1163)
T COG5602         352 RLPPIGSFSLPTAA-PEQNRPSLLW-----ESPRS-----I-----------SNISR---YR--A------DLLTSFSRN  398 (1163)
T ss_pred             cCCCCCCCCCCCcc-cccCChHHhh-----cCcch-----h-----------ccccc---cc--c------chhhhhhhh
Confidence            45665554433200 0000000000     00000     0           00000   00  0      000000001


Q ss_pred             cCCCCccccccccCCCCCCCCCccCchhhhhhhcccccchhhhHHHHHHhhcC-hHHHHHHHHHHHhhhcCCCCHHHHHH
Q 000558          333 RFPDKKKSIKKVEGFGANSSLASYDDKDALKITVAGIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQN  411 (1423)
Q Consensus       333 ~~~~k~~~~~~~~~~~~~p~~s~~~~k~~~k~~~~~~~~eEl~FFdKVKk~L~-~~~Y~EFLK~LnLYsQeIIdr~ELv~  411 (1423)
                      -.|.+.         .+ |.              +...++.-.||++||+.|. ...|+|||||||||+|+|||+++||+
T Consensus       399 ~~P~~~---------~~-P~--------------s~~~~~se~ffe~ikq~L~~~~~y~eFLKlLnLY~Q~iiDk~~Lve  454 (1163)
T COG5602         399 FVPIRI---------HM-PI--------------SHLSNESEDFFERIKQYLKDKNLYHEFLKLLNLYSQKIIDKNDLVE  454 (1163)
T ss_pred             cCCccc---------cC-Cc--------------cccCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            111100         00 10              0011122279999999999 99999999999999999999999999


Q ss_pred             HHHHHhccChHHHHHHhhhhccccccccccccccccccccCCCCccccccccchhhhhhhhhhhhhhhhhhhhhhhhccc
Q 000558          412 LVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSI  491 (1423)
Q Consensus       412 lV~~fLG~~PDLm~~FK~FLg~~e~~~~~l~g~~~~~sl~~~g~~~~~~~~~~~~r~~~~~~~~~~er~~~~~k~~~kp~  491 (1423)
                      ++-.|||.+.+||.|||+|++|.+...                   .+  +.                           -
T Consensus       455 r~~~~L~sNe~L~~wFk~fi~y~~~~~-------------------~~--~~---------------------------~  486 (1163)
T COG5602         455 RLFAFLGSNEELIRWFKAFINYSEPEK-------------------EP--LR---------------------------E  486 (1163)
T ss_pred             HHHHHhcCcHHHHHHHHHHhccCCCCC-------------------CC--cc---------------------------c
Confidence            999999999999999999999976210                   00  00                           0


Q ss_pred             cccccCCCcccCcccccCCCCCCCCCCCCccccccccccCeeeec-ccCCCCcccchhccchhhHHhhhcccchhhHHHH
Q 000558          492 QELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSV-TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDML  570 (1423)
Q Consensus       492 ~eldls~c~r~gpSYR~LPk~~~~~~cSgR~eL~~~VLND~WVS~-t~~SED~~F~~~rKNqyEE~LfrcEDERfE~D~~  570 (1423)
                      ...||+.|+.||||||+||+++...+|||||+|||+||||.|||| ||+|||++|++||||||||+||++||||||||.+
T Consensus       487 ~~~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~  566 (1163)
T COG5602         487 TRKDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRH  566 (1163)
T ss_pred             cccCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccccccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHH
Confidence            136889999999999999999999999999999999999999999 7999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccCCCccccccc----hhHHHHHHHHhhC-CChHHHHHHHHhCcCcchhHHHHHHHH
Q 000558          571 LESVSSTAKRAEELLNSINENKITLETPFHLKDHF----SALNLRCIERLYG-DHGLDVMDILRKNPAIALPVMLTRLKQ  645 (1423)
Q Consensus       571 IE~~~~tI~~Le~l~~~i~~~~~~~~~~~~l~~~l----~~i~~R~I~riYG-d~g~evi~~l~knP~~alPVVL~RLKq  645 (1423)
                      ||++.+||+.|+.++++|..|...++..+.|.++|    .+||+++|++||| +||.+||++|+++|++|+||||+|||+
T Consensus       567 Iea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~  646 (1163)
T COG5602         567 IEATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKM  646 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            99999999999999999999999999888888766    5899999999999 799999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhhhcccCCcccccccccccchhHHHHHHHHHHHhhhcchhhHHHHhhCCCCCCCCC
Q 000558          646 KQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPH  725 (1423)
Q Consensus       646 K~eEWr~aq~e~nkvWrev~~Kny~KSLDH~~~~FKq~DkK~ls~K~Lv~EI~~i~ee~~~e~d~~~~~~~g~~~~~~p~  725 (1423)
                      |++|||+|+|+|||+||+|.+|||+|||||||++||+.|||.||+|.||.||+.++.++..-   +.      .....-|
T Consensus       647 Kd~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk~lstk~il~eidd~~q~kih~---~~------~~k~~fq  717 (1163)
T COG5602         647 KDEEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKKILSTKNILEEIDDRSQAKIHV---SI------DDKKVFQ  717 (1163)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccccchHHHHHHHhhHhhhcceee---ec------Cccccce
Confidence            99999999999999999999999999999999999999999999999999999777644211   11      1223568


Q ss_pred             ceeecCChhHHHHHHHHHHHHhhhccC-CHHHHHHHHHHHHHhhhcccCCCCCCCCccchhhhhccccCCCCCCCCCccc
Q 000558          726 LEYGYSDSNIHEDLYKLVQYSCEEMCS-TKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVE  804 (1423)
Q Consensus       726 l~~~~~D~~I~~D~~~li~~~~~~~~~-~~~~~~ki~~~~~~Fl~~~f~i~~~~~~~~~~ed~~~~~~~~~~~~~~~~~e  804 (1423)
                      +.|.|+|.-|+.|++.|..-..-.+++ ...+++++..++.+||..||++-.--     .+..+-...       ..+.+
T Consensus       718 f~fvlcd~~If~nil~l~dt~itn~ssyl~~dkerlka~lk~~~slff~~~~~~-----i~~~~y~~~-------~nv~~  785 (1163)
T COG5602         718 FVFVLCDTYIFVNILDLKDTLITNMSSYLESDKERLKANLKTIVSLFFLLCIFR-----IIIIVYERL-------LNVKG  785 (1163)
T ss_pred             eeeecccceeEeeeccccceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhh-----hhhhhhhhh-------ccccc
Confidence            999999999999999986533333322 35788999999999999999854210     111111100       00000


Q ss_pred             CCCCCCCCCCccCCCCCCCCCCCCCccccccccccccccCCCcccccccccccccccccchhhhhhHhhhhccccccccc
Q 000558          805 SDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKR  884 (1423)
Q Consensus       805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  884 (1423)
                      .                   |.+                 |++        +.|.+++                      
T Consensus       786 ~-------------------ni~-----------------g~k--------~~r~srs----------------------  799 (1163)
T COG5602         786 L-------------------NID-----------------GLK--------ADRSSRS----------------------  799 (1163)
T ss_pred             c-------------------ccC-----------------Ccc--------ccccccc----------------------
Confidence            0                   000                 000        0000000                      


Q ss_pred             cchhhhhhhcccccCCCCCCcccccCCCCCCCcccccCCCCCCCccccccccccCCCCCCCCcccccCCCCCcccccccc
Q 000558          885 SGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGA  964 (1423)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  964 (1423)
                       ....|   .+....                                                              +|-
T Consensus       800 -~~~~q---~~s~vk--------------------------------------------------------------sgn  813 (1163)
T COG5602         800 -DESAQ---RYSKVK--------------------------------------------------------------SGN  813 (1163)
T ss_pred             -chhhh---hHHHhh--------------------------------------------------------------ccc
Confidence             00000   000000                                                              000


Q ss_pred             cccCcccccccccCCCCCccccccCccCCCCCcccccccccccccccccccccCCccchhccccccccccccccCCCCCC
Q 000558          965 LRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDA 1044 (1423)
Q Consensus       965 ~~~~~~~~~~~~~~~~~~~~ereegelsp~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 1044 (1423)
                      + +..+              +.+++++-                                                    
T Consensus       814 ~-~qvs--------------~q~de~ai----------------------------------------------------  826 (1163)
T COG5602         814 L-EQVS--------------KQIDEYAI----------------------------------------------------  826 (1163)
T ss_pred             c-hhcc--------------cCCchhHH----------------------------------------------------
Confidence            0 0000              00000000                                                    


Q ss_pred             CCCccccCCccccCCCCCCCCCCCCccccchhhhhhcccccccCCccccccccccCccccccCCCCCCCCchhhhhcccC
Q 000558         1045 DADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVK 1124 (1423)
Q Consensus      1045 ~adde~s~~~s~~~~~~s~~~s~~~e~~~~~~~~e~~~~~~~~d~k~es~gea~~~~~~~~~~~d~~~~~~~~~~~~~~k 1124 (1423)
                        +||       ..++        -+|  ++.+                        +.+.-.|.+.    .        
T Consensus       827 --ede-------~k~p--------~hp--d~l~------------------------eh~~skgi~e----n--------  851 (1163)
T COG5602         827 --EDE-------IKEP--------THP--DGLK------------------------EHNISKGISE----N--------  851 (1163)
T ss_pred             --HHH-------hcCC--------CCC--chHH------------------------Hhhhhhccch----h--------
Confidence              000       0000        000  0000                        0000001100    0        


Q ss_pred             cccccCCCCcccccCccceeeecCchHhHHHHHHHHHHHHHHHHhhchhhhhhcccCcCCCchHHHHHHHHHHHHhhcCC
Q 000558         1125 PLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGS 1204 (1423)
Q Consensus      1125 pl~~~~~~~~~~~~~~~~~FfgN~~~YvFfRL~qiLYeRL~~~K~~~~~~e~~~k~~~d~~~~~~Y~~fL~~l~~LldG~ 1204 (1423)
                        .++         -...+||||.++||||||+..+||||+.+|....+..+-      .....-|.+.|.+|++|+.|.
T Consensus       852 --ek~---------~i~~~~fgns~myvffrl~~~~yerLyeik~~~e~vti~------~~~~g~Yen~l~~s~rli~g~  914 (1163)
T COG5602         852 --EKQ---------VIALTEFGNSLMYVFFRLRFDSYERLYEIKKIKEAVTIG------MMEPGHYENELWDSYRLIFGA  914 (1163)
T ss_pred             --hHH---------HHHHhhcccceeeeehhhhHhHHHHHHHHHHHHHHhhhh------hcccchhhhHHHHHHHHHhcc
Confidence              011         112469999999999999999999999999776554321      122348999999999999999


Q ss_pred             CCchhhHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcCCC-ccccHHHHHHHHhhc-CCC
Q 000558         1205 IDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPG-KQIDSVYYENARVLL-HEE 1282 (1423)
Q Consensus      1205 iD~~~FED~lR~~fG~~aY~lFTiDKLI~~lvKQlq~ivsDe~~~~ll~L~~~Er~r~~~-~~~di~Yr~~Ae~ll-~DE 1282 (1423)
                      +++.+||+.+|.+|++++|++||||||.+.|+||+|+|++|.|...++.||....+..++ ...++.||..+|.+| +||
T Consensus       915 l~~~efekylr~fynntcykiytidrl~qsl~kq~h~i~~d~Ky~~~~~lfe~nsaaS~k~~~dq~~yrl~ves~l~p~e  994 (1163)
T COG5602         915 LTPCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYDIKYIAKSELFEMNSAASSKRKQDQTKYRLEVESLLNPDE  994 (1163)
T ss_pred             ccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccccchHHHHHHHHHHhccccCcCccchhhHHHHHHHHhcCchh
Confidence            999999999999999999999999999999999999999999999999999766665543 457899999999776 899


Q ss_pred             CEEEEEEecCCCeEEEEEecCC---cCCccccccCCchHHHHHHhhhhcccccCCC----CCCcccccCccccccCchhh
Q 000558         1283 NIYRIQLSSSPSRLSIQLMDNV---IEKPEAFAVTMDPNFAAYLLNDFLSAFLGKK----EPHAVVLRRNKRRFEGLDEL 1355 (1423)
Q Consensus      1283 niyRie~~~~~~~ltIqLld~~---~d~~e~~~~s~d~~w~~Yv~s~f~~~~pte~----~~~~vFL~RNl~~~~~~~e~ 1355 (1423)
                      +||||+|.+..+++.||.|-..   .+++.++    ...|.+||+ +|.-.++||+    ..+.|||.|||.+.+..+..
T Consensus       995 ~~Fr~~w~~~~k~~~Iq~~~~adLt~~~~~~~----~~~wkyYV~-sYai~h~TEgi~~~~~k~PFL~R~ie~~~~v~~l 1069 (1163)
T COG5602         995 ILFRFCWINKFKSFGIQIMKRADLTVDQSLDT----QRVWKYYVQ-SYAIQHLTEGISYKNYKCPFLCRNIEKERTVEQL 1069 (1163)
T ss_pred             heeeeeecchhheeeeeEeeccccccccccCh----HHHHHHHHH-hhccccccccCchhhccchHHHHHHHhhhhHHHH
Confidence            9999999999999999999442   2222222    237999999 6998899998    35899999999874322221


Q ss_pred             HH--HhhhcCCceeecCcEEEEecCceeEEEEcCCceEEEEecccccccccchhhhHHHHHHHHhhhc
Q 000558         1356 SA--ACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRRTYRARSSHYNQARVLRFHRFLS 1421 (1423)
Q Consensus      1356 ~~--~~~~~~~v~v~~gLeckI~~~SyK~~Yv~~TED~f~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1421 (1423)
                      ..  .......-...+||+..+|+.|||++|.|+|||..+-....+..- ..-..+++|.+||++|++
T Consensus      1070 ~s~~q~~l~~~h~~~s~lq~f~~~dt~k~~~~pnte~~yi~~s~l~~~~-s~fldcq~rk~~wr~We~ 1136 (1163)
T COG5602        1070 VSRLQTKLLRSHELVSGLQAFLCLDTFKLLYLPNTEDSYIDASYLRLRD-SDFLDCQKRKQRWRNWES 1136 (1163)
T ss_pred             HhhhhHHHHHHHHHhccceeeeeeccceeeeccCCccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHH
Confidence            00  001111224468999999999999999999999988666555111 112346789999999986

>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting Back     alignment and domain information
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators Back     alignment and domain information
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat Back     alignment and domain information
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat Back     alignment and domain information
>PTZ00146 fibrillarin; Provisional Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>PLN03138 Protein TOC75; Provisional Back     alignment and domain information
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription] Back     alignment and domain information
>PLN03138 Protein TOC75; Provisional Back     alignment and domain information
>COG4371 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription] Back     alignment and domain information
>PHA00370 III attachment protein Back     alignment and domain information
>PHA00370 III attachment protein Back     alignment and domain information
>COG4371 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription] Back     alignment and domain information
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1423
2rmr_A71 Solution Structure Of Msin3a Pah1 Domain Length = 7 4e-17
2rmr_A71 Solution Structure Of Msin3a Pah1 Domain Length = 7 4e-06
2czy_A77 Solution Structure Of The NrsfREST-Msin3b Pah1 Comp 8e-15
2czy_A77 Solution Structure Of The NrsfREST-Msin3b Pah1 Comp 1e-07
2cr7_A80 Solution Structure Of The First Pah Domain Of The M 8e-14
2cr7_A80 Solution Structure Of The First Pah Domain Of The M 1e-07
2l9s_B94 Solution Structure Of Pf1 Sid1-Msin3a Pah2 Complex 1e-13
2f05_A105 Solution Structure Of Free Pah2 Domain Of Msin3b Le 6e-13
1g1e_B89 Nmr Structure Of The Human Mad1 Transrepression Dom 2e-12
1e91_A85 Structure Of The Complex Of The Mad1-Sin3b Interact 2e-11
2ld7_B75 Solution Structure Of The Msin3a Pah3-Sap30 Sid Com 2e-04
>pdb|2RMR|A Chain A, Solution Structure Of Msin3a Pah1 Domain Length = 71 Back     alignment and structure 
Iteration: 1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 52/71 (73%)
Query: 74  QKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNL 133
           Q+L   DAL+YL +VK  F  Q + Y+ FL++MK+FK+Q  DT GVI+RV  LFKGH +L
Sbjct: 1   QRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDL 60
Query: 134 IFGFNTFLPKG 144
           I GFNTFLP G
Sbjct: 61  IMGFNTFLPPG 71
>pdb|2RMR|A Chain A, Solution Structure Of Msin3a Pah1 Domain Length = 71 Back     alignment and structure
>pdb|2CZY|A Chain A, Solution Structure Of The NrsfREST-Msin3b Pah1 Complex Length = 77 Back     alignment and structure
>pdb|2CZY|A Chain A, Solution Structure Of The NrsfREST-Msin3b Pah1 Complex Length = 77 Back     alignment and structure
>pdb|2CR7|A Chain A, Solution Structure Of The First Pah Domain Of The Mouse Transcriptional Repressor Sin3b Length = 80 Back     alignment and structure
>pdb|2CR7|A Chain A, Solution Structure Of The First Pah Domain Of The Mouse Transcriptional Repressor Sin3b Length = 80 Back     alignment and structure
>pdb|2L9S|B Chain B, Solution Structure Of Pf1 Sid1-Msin3a Pah2 Complex Length = 94 Back     alignment and structure
>pdb|2F05|A Chain A, Solution Structure Of Free Pah2 Domain Of Msin3b Length = 105 Back     alignment and structure
>pdb|1G1E|B Chain B, Nmr Structure Of The Human Mad1 Transrepression Domain Sid In Complex With Mammalian Sin3a Pah2 Domain Length = 89 Back     alignment and structure
>pdb|1E91|A Chain A, Structure Of The Complex Of The Mad1-Sin3b Interaction Domains Length = 85 Back     alignment and structure
>pdb|2LD7|B Chain B, Solution Structure Of The Msin3a Pah3-Sap30 Sid Complex Length = 75 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1423
d2f05a185 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [Tax 1e-24
d2f05a185 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [Tax 7e-24
d2f05a185 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [Tax 1e-10
d1s5qb_89 a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 4e-23
d1s5qb_89 a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 2e-22
d1s5qb_89 a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 1e-09
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure

class: All alpha proteins
fold: PAH2 domain
superfamily: PAH2 domain
family: PAH2 domain
domain: Sin3B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.8 bits (241), Expect = 1e-24
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 10/81 (12%)

Query: 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKD----------INEVYSE 206
             +VEF  AI++VNKIK RF +   +Y+SFLEIL+ Y+KE               EV++E
Sbjct: 2   SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTE 61

Query: 207 VASLFEDHADLLEEFTRFLPD 227
           VA+LF    DLL EF +FLP+
Sbjct: 62  VANLFRGQEDLLSEFGQFLPE 82
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1423
d2f05a185 Sin3B {Mouse (Mus musculus) [TaxId: 10090]} 99.78
d1s5qb_89 Sin3A {Mouse (Mus musculus) [TaxId: 10090]} 99.75
d1s5qb_89 Sin3A {Mouse (Mus musculus) [TaxId: 10090]} 99.69
d2f05a185 Sin3B {Mouse (Mus musculus) [TaxId: 10090]} 99.68
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: PAH2 domain
superfamily: PAH2 domain
family: PAH2 domain
domain: Sin3B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=9.1e-20  Score=151.68  Aligned_cols=73  Identities=29%  Similarity=0.639  Sum_probs=66.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH----------HHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf             76542045647898776304885889999999999883169936----------59999999840490256331005874
Q 000558           74 QKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTA----------GVIARVKDLFKGHNNLIFGFNTFLPK  143 (1423)
Q Consensus        74 ~~~~~~dAl~YL~~VK~~F~d~p~~Y~~FLeImkdfk~~~id~~----------gVi~rV~~LF~ghpdLI~GFN~FLP~  143 (1423)
                      ..+.++||++||++||.+|+++|++|++||+||++|+.++||++          +|+.+|+.||+||||||.|||+|||.
T Consensus         3 ~~~~~~dA~~yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLl~~F~~FLP~   82 (85)
T d2f05a1           3 DSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPE   82 (85)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSCG
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf             86439999999999999983587999999999999998611333445456779999999999984488999999977846


Q ss_pred             CCC
Q ss_conf             322
Q 000558          144 GYE  146 (1423)
Q Consensus       144 gy~  146 (1423)
                      ||+
T Consensus        83 ~~~   85 (85)
T d2f05a1          83 AKR   85 (85)
T ss_dssp             GGC
T ss_pred             CCC
T ss_conf             559
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure