Citrus Sinensis ID: 000566

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------
MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
ccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccccccccEEEEcHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHccccEEEEcHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHccccccEEEEccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccEEEEEEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcc
cccccccccccEEEcccccccccccEEEHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccEEEccccccccccccccccEEEEccccccccEEEcccccccEccccccccccHcHcccccccccccccccEEEEEEEEcccccccccccccEEEccccccccccccccccEEEcccccccccccccccccccccHHHHHHHHHHcccccHHcccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccHcccccccccEccccccEEEEEcccccccEEcccccEEccccEEEEEEccccccccccccccccccccccccccccccccccEEEcccccccEEEEccccHHHHHHHccccccccccccccccccccHHccccccccccccHHHccccccccccccccccccccccccccccHHHcHHcccccccccccEEEEccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEccccccHHHHHHHHHHHHccccccccccccccccccccccHcccccccccccHcccccccccccccccEHHHHHccccccccccccEEEEEcHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHcccEEEEEHHHHHHHccccccHHcccHcccccccccccccccccccccccccccccccccccEEEccccccccccccHHHEEEEEEEEHHHHHcccHHHHHHHHHHHHHHccEEEEcccHHHccHHHHHHHHHHHcccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHccccccccccHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccEEccccccccHHHHHHHccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHccHHHccccHHHHcccccccccccccHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccccEEEEEEEEcccccEEEEEccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccHHccccHHHHHHHHcc
mlmadnawlcgevsaadefaddqglsidMDTLLGIleeekqpdrvksspgdlslrnlsqDELVqdvgshsnlqlqseisgaesgglgdsssqlepteqkcsplqtcsasfsdwfnqnsgtccpesvgisqfetpgcstassfsegdgyhfldhrntldfgvlgakagirfghvgshidsrsvdaspssitenfderyghygasignrlgssvpegnlctyvdvpytdaevsshnvastdstichgseiisdddyysampcyintgdtifgdpssfnfqhllsseetatkpkdeegeftteiacsssglvlnaqggpgkgsmlkvpaidyldakrqcedsknglpiygnslsnitlgdgkrsaqpctyshshssrtKQMVFAkdegnddlfpcwstvsdsvepideavgrnssyhdgcnsfpfkdsgqsfiglspsllsqnqvvhAKEEHEDLILESKRARFCQEicdgsssrspidgrhlslnlngsrqyfpyaqpstlnkkeldgVKEDMEAEIKTRSMASHLlklspesiqsnssdckshvddepdiciledisqparsnqslvlgktlsmnrsacsnhsvalgkpvvtsqhssysdypgypgvpltglggmkskaSDERLILQVAMQgisqpnaeasapdgvlavPLLRHQRIALSWMVQketsslhcsggiladdqglgkTISTIALILkerppsfrteddnKRQLEtlnldeedngiqvngldlvkqesdycrvvpngssaksfnfveqakgrpaagtlvvcpTSVLRQWAEELRNKVTSKGSLSVLVYhgssrtkdpcelakfdVVITTYSIVSmevpkqplgdkedeeekmkiegedlppmycssskkrkcppssdrkgskqkkgpdgllldivagplakvgWFRVVLDEAQSIKNHRTQVARACWGLrakrrwclsgtpiQNAIDDLYSYFrflrydpfavYKSFCSMikvpisknpvkGYKKLQAVLKTIMLRRtkgtlldgepiinlppkvimlkqvdftdeerdFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQacdhpllvkgfdsnslLRSSVEMAKKLPQERQMYLLNCLEASLAIcgicndppedaVVSICGhvfcnqcicerltaddnqcptrnckirlslssVFSKAtlnnslsqrqpgqeiptdysdsklveapscegvwynSSKIKAALEVLQSLakprgntvtnhslrhsfngsiccpgdsndlhggdtldniSDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDkavkdfntlPEVSVMIMSLKAASLGLNMVAACHVLLLDlwwnpttedqaidrahrigqtrpvSVLRLTVKNTVEDRILALQQKKREMVASafgedetggqqtrltvddlNYLFMV
MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEeekqpdrvksspgdlSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVgshidsrsvdaspSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHnvastdsticHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPctyshshssrtKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEIcdgsssrspidgRHLSLNLNGSRQyfpyaqpstlnkkeldGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILedisqparsNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIlkerppsfrteddNKRQLEtlnldeedngiqVNGLDLVKQESDYCRVVPngssaksfnfVEQAkgrpaagtlvvCPTSVLRQWAEELrnkvtskgslSVLVYhgssrtkdpcelAKFDVVITTYSIvsmevpkqplgdkedeeekmkiegedlppmycssskkrkcppssdrkgskqkkgpdgLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKvpisknpvkgyKKLQAVLKTIMLRrtkgtlldgepiinlppkvIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVkgfdsnsllRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLtaddnqcptRNCKIRLSLSSVFSKATlnnslsqrqpgqeiptdysdsKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCsidsiklggEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDrahrigqtrpvsvlrltvkntvEDRILALQQKKREMVASafgedetggqqtrltvddlnYLFMV
MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGdkedeeekmkiegedLPPMYcssskkrkcppssdrkGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
*****NAWLCGEVSAADEFADDQGLSIDMDTLLGIL*********************************************************************CSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHI***************FDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQH****************************LVL***********LKVPAIDYLDAKR*C*****GLPIYGNSL**I*********************************DDLFPCWSTVSDSV***************GCNSFPF******FIGL*******************LILESKRARFCQEIC**********************************************************************************ICIL**************************************************Y**V****************LILQVA***************GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK***************************IQVNGLDLVKQESDYCRVVPNG**AKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM*****************************************************GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR**********QERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF*****************************APSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPG*******************KIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ***********************TVDDLNYLF**
*******WLCGEVSAADEFADDQGLSIDMDTLLGIL***********************************************************************************************************************TLDFGVL*****************************NFDERYGHYGASIG******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DERLILQV*******************AVPLLRHQRIALSWMVQK*************DDQGLGKTISTIALILKERPPSFRTE*******************************************************PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQP***********************************************GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGT*LD*EPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQF***********NYVNILLMLLRLRQACDHPLLVKGF****************PQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQ**********************VWYNSSKIKA*******************************PGDSNDLHGGDTLDNISDENE*****CSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT****************PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE**********************LNYLFMV
MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEK**********DLSLRNLSQDELVQDVGSHSNLQLQSEISG***********************QTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHID**********ITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEE***********FTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLG*******************KQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSP**************DDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQ************KIEGEDLPPMY**********************GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
****DNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEE*********************************************************************************CCP****I*QF*T*GCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNK**LDGV**********************************HVDDEPDICILEDISQPA**NQSLVLG**************************************************SDERLILQVAMQG*********APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER***********************************************SSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQ*****************************************KQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSL******************VEAPSCEGVWYNSSKIKAALEVLQSLAKP*********LRHSFN***C**********GDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1416 2.2.26 [Sep-21-2011]
O601771040 Uncharacterized ATP-depen yes no 0.458 0.624 0.292 1e-92
O13762897 Uncharacterized ATP-depen no no 0.442 0.697 0.303 6e-84
P31244790 DNA repair protein RAD16 yes no 0.360 0.646 0.309 6e-82
P0CQ661198 DNA repair protein RAD5 O yes no 0.447 0.528 0.297 5e-81
P0CQ671198 DNA repair protein RAD5 O N/A no 0.447 0.528 0.298 7e-81
Q145271009 Helicase-like transcripti yes no 0.308 0.433 0.321 2e-69
Q5ACX11084 DNA repair protein RAD5 O N/A no 0.394 0.515 0.272 1e-65
Q4WVM11245 DNA repair protein rad5 O no no 0.447 0.509 0.265 4e-65
Q5BHD61202 DNA repair protein rad5 O yes no 0.432 0.509 0.269 1e-64
Q753V51085 DNA repair protein RAD5 O no no 0.396 0.517 0.267 6e-63
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=3 SV=1 Back     alignment and function desciption
 Score =  342 bits (878), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 234/801 (29%), Positives = 386/801 (48%), Gaps = 152/801 (18%)

Query: 630  QGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 689
            Q ++ P      P G++   L+ HQ+  L W+ + E SS    GGILADD GLGKT+  +
Sbjct: 371  QLVNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESS--KKGGILADDMGLGKTVQAL 427

Query: 690  ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 749
            AL++  RP                                           P   S K+ 
Sbjct: 428  ALLVT-RP-------------------------------------------PESKSVKT- 442

Query: 750  NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-LAK 808
                         TL++ P S+L+QW  E+  K+      +V ++HGSS+     E L  
Sbjct: 443  -------------TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMS 489

Query: 809  FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSK 868
            +D+V+TTY++++ E   +   DK  E+     + E LP                      
Sbjct: 490  YDIVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLP---------------------- 527

Query: 869  QKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 928
                              +  W+RV+LDEAQ+IKN  T  AR C  L +  RWCLSGTP+
Sbjct: 528  ----------------FFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPM 571

Query: 929  QNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN--PVKGYKKLQAVLKTIMLRRTKG 986
            QN +++ YS  +FLR  P++ + SF     +P+S N       K+ + +LK ++LRRTK 
Sbjct: 572  QNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKN 631

Query: 987  TLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILL 1046
            T +DG+PI+ LPPK  +  + D +  E +FY+ L+  ++ Q ++Y   GT+  +Y ++L+
Sbjct: 632  TKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLV 691

Query: 1047 MLLRLRQACDHPLLVKGF-----DSNSLLRSSVEMAKKLPQE--RQMYLLNCLEASLAIC 1099
            +LLRLRQAC HP L+        D++S    +  +  ++  E   ++ L+  L+     C
Sbjct: 692  LLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKLIETLQ-----C 746

Query: 1100 GICNDPPEDAVVSI-CGHVFCNQCICERLTADDN---QCPTRNCKIRLSLSSVF--SKAT 1153
             +C D   + ++ + CGH  C +C+   +T+ ++   Q    N   + S+   +  ++  
Sbjct: 747  SLCMDVVAELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTERL 806

Query: 1154 LNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNH 1213
            L+ +L +R  G   P   +D+KL                     + + L K   N + N 
Sbjct: 807  LSYALFRRYSGMA-PIVDADNKL-----------------RTENISELLPKQYSNILENR 848

Query: 1214 SLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKM 1273
             +       +    D         ++   +  ++I  K   D I       ++FSQ+   
Sbjct: 849  QM------GMKIFTDPKHWTTSTKIEKALNAVKEIIKKQPTDKI-------LIFSQFVSF 895

Query: 1274 LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1333
            L+L     +   I+Y    G +S   R++A+ +F   P V V+++SLKA ++GLN+  A 
Sbjct: 896  LELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCAN 955

Query: 1334 HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF 1393
            HV++LD +WNP  E+QA+DRAHRIGQ +PV++LR+   NT+E+R+LALQ +KRE++ SA 
Sbjct: 956  HVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSAL 1015

Query: 1394 GEDETGGQQTRLTVDDLNYLF 1414
            GE +   + +RL   +L++LF
Sbjct: 1016 GE-KGLREISRLNTKELSFLF 1035

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A2.12 PE=3 SV=1 Back     alignment and function description
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1 Back     alignment and function description
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3 SV=1 Back     alignment and function description
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1 Back     alignment and function description
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 Back     alignment and function description
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD5 PE=3 SV=1 Back     alignment and function description
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2 Back     alignment and function description
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1 Back     alignment and function description
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1416
3594948721430 PREDICTED: uncharacterized protein LOC10 0.964 0.955 0.573 0.0
1478522791435 hypothetical protein VITISV_020421 [Viti 0.947 0.934 0.555 0.0
3565576651307 PREDICTED: uncharacterized protein LOC10 0.894 0.968 0.519 0.0
3565466631337 PREDICTED: uncharacterized protein LOC10 0.894 0.947 0.503 0.0
3574464411314 Helicase-like transcription factor [Medi 0.906 0.976 0.496 0.0
4494343501286 PREDICTED: ATP-dependent helicase ULS1-l 0.792 0.872 0.556 0.0
4494796151239 PREDICTED: ATP-dependent helicase ULS1-l 0.792 0.905 0.555 0.0
3565462661356 PREDICTED: uncharacterized protein LOC10 0.911 0.951 0.492 0.0
2960809081187 unnamed protein product [Vitis vinifera] 0.795 0.948 0.491 0.0
224116170800 chromatin remodeling complex subunit [Po 0.557 0.987 0.733 0.0
>gi|359494872|ref|XP_002263027.2| PREDICTED: uncharacterized protein LOC100265351 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1494 bits (3869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 847/1478 (57%), Positives = 1013/1478 (68%), Gaps = 112/1478 (7%)

Query: 3    MADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDEL 62
            MADN W   + S  +  ADD+ LSID+++   IL E+  PD ++SSP D   +N+SQDE 
Sbjct: 1    MADNNW---DFSFNEFSADDEELSIDLESFYSILGED--PDPMQSSPEDFPFKNVSQDES 55

Query: 63   VQDVGSHSNLQLQSEISGAESGGLGDS--------------------------SSQLE-- 94
              D G H N Q         +  LGD                           +S +E  
Sbjct: 56   APDFGHHDNSQPHGFQELGRASSLGDEFLRHSFNSEASHSITRGSDGLFESAGNSIIECA 115

Query: 95   --PTEQKCSPLQTCSASFSDWFNQNSG--TCCPESVGISQ--------------FETPGC 136
              P+    SP+++ S S +DW +  SG  TCC E  G+SQ              +E P C
Sbjct: 116  KLPSAHAGSPVRSGSGSLNDWISHVSGQETCCKERSGVSQDALSYNRVDSKEIQYEIPNC 175

Query: 137  STASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDER 196
            STA SF+ G+  +  D+ N LD   L      +F H+G  I S    AS S +TEN D  
Sbjct: 176  STAFSFAAGNSNYASDYTNGLDLNHLNGDTEAQFKHMGVEIHSEY--ASNSMVTENSDIG 233

Query: 197  YGHYGASIGNRLGSSVPEGNL-CTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDD-DY 254
             G Y  +I    G  V  G   CT + +   DA++SSH+V  T+S+IC   +++ ++ + 
Sbjct: 234  LGSYEPAIEKSTGDLVTGGKYSCTSMTISLRDADISSHDVNHTESSICQIPDVVYENSED 293

Query: 255  YSAMPCYINTGDTIFGDPSS------FNFQHLLSSEETATKPKDEEGEFTTEIACSSSGL 308
            YSA+   ++   ++F DPSS      F+ Q + SSEE     KDE  E + E  C +S +
Sbjct: 294  YSAVQYCLSADGSLFSDPSSQYMPDCFDLQFMPSSEEMLINMKDENEELSAENTCLNSKM 353

Query: 309  VLNAQGGPGKGSMLKVPAIDYLDAK---RQCEDSKNGLPIYGNSLSNITLG--DGKRSAQ 363
             L+        S ++    +Y D K      E S    P  GNS SN   G  D  RS Q
Sbjct: 354  NLSQDARAS--SFVQKGLNNYSDVKGLNFNHEGSNYVSPTSGNSSSNAGYGSNDDIRSIQ 411

Query: 364  PCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFK 423
              T S S+ S  ++ +  KDE  D+L      +    E +DEAV    S       F  K
Sbjct: 412  LSTCSQSYMSNKRRAICIKDERKDELVA--PGICQPNEVVDEAVNDRFSLGVDARVFADK 469

Query: 424  DSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLN 483
            +S Q      P + S+  +  AK+E+EDL L SKR R CQ I D  S RS   G  L   
Sbjct: 470  NSRQMLSCFPPFISSKKNLFDAKDENEDLYLASKRPRHCQVIGDELSGRSQSGGGPLD-- 527

Query: 484  LNGSRQYFPYAQPSTLNKKELDGVKEDMEAE-IKTRSMASHLLKLSPESIQSNSSDCKSH 542
               S Q  P  + ST++ K+LD +K++ E + I+ +SM S+L K+SPESIQSNS D +SH
Sbjct: 528  -TVSEQLIPSVKQSTVSNKQLDYIKDEKEGKLIQPKSMGSYLSKVSPESIQSNSLDHRSH 586

Query: 543  VDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPG 602
            +DD+ DICILEDIS+P RSN SL+LGK+L                  V++Q   YSD   
Sbjct: 587  IDDDTDICILEDISEPVRSNSSLLLGKSL------------------VSTQR--YSD--- 623

Query: 603  YPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMV 662
               +  TG+ GM+++ +DERLI +VA+Q +SQP +EAS PDGVL VPLLRHQRIALSWMV
Sbjct: 624  --SLHNTGVVGMRNRTNDERLIFRVALQDLSQPKSEASPPDGVLTVPLLRHQRIALSWMV 681

Query: 663  QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRT--EDDNKRQLETLNLDEEDN 720
            QKET+SLHCSGGILADDQGLGKT+STIALILKERP S R   ED  + +LETLNLDE+D+
Sbjct: 682  QKETASLHCSGGILADDQGLGKTVSTIALILKERPTSSRACQEDMKQSELETLNLDEDDD 741

Query: 721  GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELR 780
              +V  LD  KQ +D C V+ +GSS K  N   Q KGRPAAGTLVVCPTSVLRQWAEELR
Sbjct: 742  --KVPELDGTKQAADSCEVMSHGSSMKKENAFVQGKGRPAAGTLVVCPTSVLRQWAEELR 799

Query: 781  NKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKI 840
            +KVTSK +LSVLVYHGS+RTKDPCELA++DVV+TTYSIVSMEVPKQPL DK+DEE K+K 
Sbjct: 800  SKVTSKANLSVLVYHGSNRTKDPCELARYDVVLTTYSIVSMEVPKQPLVDKDDEE-KVKP 858

Query: 841  EGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQS 900
            E   + P   SS+KKRK PPSSD+K  K KK  DG LL+ VA PLA+VGWFRVVLDEAQS
Sbjct: 859  EAH-VSPTELSSNKKRKYPPSSDKKCLKDKKAMDGALLESVARPLARVGWFRVVLDEAQS 917

Query: 901  IKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVP 960
            IKNHRTQVARACWGLRAKRRWCLSGTPIQNA+DDLYSYFRFLRYDP+AVYKSFCS IKVP
Sbjct: 918  IKNHRTQVARACWGLRAKRRWCLSGTPIQNAVDDLYSYFRFLRYDPYAVYKSFCSTIKVP 977

Query: 961  ISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 1020
            I++NP  GY+KLQAVLKTIMLRRTKGTLLDGEPII LPPK + LK+VDF+ EERDFYS+L
Sbjct: 978  ITRNPTNGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKSVELKKVDFSKEERDFYSRL 1037

Query: 1021 EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKL 1080
            E +SR QF+ YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG++SNS+ RSSVEMAKKL
Sbjct: 1038 EADSRAQFEVYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGYNSNSVWRSSVEMAKKL 1097

Query: 1081 PQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCK 1140
             +E+Q+YLLNCLE SLAICGICNDPPEDAVVSICGHVFCNQCICE LT+D+NQCP+ NCK
Sbjct: 1098 SREKQIYLLNCLEGSLAICGICNDPPEDAVVSICGHVFCNQCICEHLTSDENQCPSTNCK 1157

Query: 1141 IRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEA--PSCEGVWYNSSKIKAALEV 1198
            ++L++SSVFSKATL +SLS   P Q+I    S S+LVEA  P  E   Y+SSKI+AALEV
Sbjct: 1158 VQLNVSSVFSKATLKSSLSDL-PVQDISHHCSGSELVEAHDPCPESRLYDSSKIRAALEV 1216

Query: 1199 LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIK 1258
            LQSL+KPR  T+ N SL+ S N +     + +D H    L    DE   +  K SI  + 
Sbjct: 1217 LQSLSKPRDCTLGNSSLKSS-NETTSGLENLSDSHSEGLLKETCDEKNVVLDKGSITVV- 1274

Query: 1259 LGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1318
              GEKAIVFSQWT+MLDLLE+ LK+SSIQYRRLDGTMSV ARDKAVKDFNTLPEVSVMIM
Sbjct: 1275 --GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIM 1332

Query: 1319 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1378
            SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPV+VLRLTVK+TVEDRI
Sbjct: 1333 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRI 1392

Query: 1379 LALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1416
            LALQQKKREMVASAFGEDETG +QTRLTVDDL YLFMV
Sbjct: 1393 LALQQKKREMVASAFGEDETGSRQTRLTVDDLKYLFMV 1430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147852279|emb|CAN82215.1| hypothetical protein VITISV_020421 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356557665|ref|XP_003547135.1| PREDICTED: uncharacterized protein LOC100805307 [Glycine max] Back     alignment and taxonomy information
>gi|356546663|ref|XP_003541743.1| PREDICTED: uncharacterized protein LOC100792901 [Glycine max] Back     alignment and taxonomy information
>gi|357446441|ref|XP_003593498.1| Helicase-like transcription factor [Medicago truncatula] gi|355482546|gb|AES63749.1| Helicase-like transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|449434350|ref|XP_004134959.1| PREDICTED: ATP-dependent helicase ULS1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479615|ref|XP_004155652.1| PREDICTED: ATP-dependent helicase ULS1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356546266|ref|XP_003541550.1| PREDICTED: uncharacterized protein LOC100802436 [Glycine max] Back     alignment and taxonomy information
>gi|296080908|emb|CBI18752.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116170|ref|XP_002317230.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222860295|gb|EEE97842.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1416
TAIR|locus:20084701280 EDA16 "embryo sac development 0.407 0.450 0.525 6.8e-252
TAIR|locus:2008096981 AT1G50410 [Arabidopsis thalian 0.565 0.816 0.560 3.3e-230
TAIR|locus:20953601047 AT3G20010 [Arabidopsis thalian 0.328 0.444 0.530 1.7e-220
TAIR|locus:2089318638 AT3G16600 [Arabidopsis thalian 0.079 0.175 0.654 1.9e-138
POMBASE|SPBC23E6.021040 rrp2 "ATP-dependent DNA helica 0.205 0.279 0.342 2.9e-90
ASPGD|ASPL00000301721184 AN5483 [Emericella nidulans (t 0.167 0.200 0.380 2.6e-86
TAIR|locus:21583571277 AT5G43530 [Arabidopsis thalian 0.187 0.207 0.339 3.6e-84
ZFIN|ZDB-GENE-030131-3306942 hltf "helicase-like transcript 0.182 0.273 0.349 1.2e-82
TAIR|locus:2207175833 AT1G05120 [Arabidopsis thalian 0.105 0.180 0.468 2.4e-81
DICTYBASE|DDB_G0272082 1838 DDB_G0272082 "CHR group protei 0.134 0.103 0.408 1.5e-80
TAIR|locus:2008470 EDA16 "embryo sac development arrest 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1442 (512.7 bits), Expect = 6.8e-252, Sum P(5) = 6.8e-252
 Identities = 324/616 (52%), Positives = 413/616 (67%)

Query:   575 RSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQ 634
             +SA  +  +A+  PVV+S++S+ S             GG+K +++ E +I Q A+Q ++Q
Sbjct:   488 QSAIPHRPLAMKMPVVSSEYSTVSHN-------FNQSGGLKLQSNKENMIFQAALQDLTQ 540

Query:   635 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 694
             PN+EA  PDGVL VPLLRHQRIALSWM QKETS   CSGGILADDQGLGKT+STIALILK
Sbjct:   541 PNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILK 600

Query:   695 ERP-PSFRTEDDNKRQLETLNLDE-EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 752
             ER  P+   E+  K+++  L  +  E   ++ +G     +  ++ +++ N +     + V
Sbjct:   601 ERSKPAQACEESTKKEIFDLESETGECAPLKPSGRS---KHFEHSQLLSNENKVGG-DSV 656

Query:   753 EQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVV 812
              +  GRPAAGTLVVCPTSV+RQWA+EL  KVTS+ +LSVLVYHGSSRTKDP ELAK+DVV
Sbjct:   657 GKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVV 716

Query:   813 ITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKG 872
             +TT+SIVSMEVPKQPL                    +                GSK+KK 
Sbjct:   717 VTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKK-GSKKKK- 774

Query:   873 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 932
                  ++ ++GPLAKV WFRVVLDEAQSIKN++TQVARACWGLRAKRRWCLSGTPIQN+I
Sbjct:   775 -----VEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSI 829

Query:   933 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 992
             DDLYSYFRFL+YDP++ Y  FCS IK PI++NPVKGY+KLQA+LKT+MLRRTKG+LLDG+
Sbjct:   830 DDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGK 889

Query:   993 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1052
             PII+LPPK I L++VDFT EERDFYS+LE  SR QF+EYA AGTVKQNYVNILLMLLRLR
Sbjct:   890 PIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLR 949

Query:  1053 QACDHPLLVKGFDSNSLLRSSVEMAKK-LPQERQMYLLN-CLEAS----LAICG--ICND 1104
             QACDHPLLV G + +    SSV +AKK +  +  + +   C +A      ++CG   C  
Sbjct:   950 QACDHPLLVNG-EYSFTWESSVGLAKKQIQSDASLAICGICNDAPEDAVASVCGHVFCKQ 1008

Query:  1105 PPEDAVVSICGHVFCNQCICE-RLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQP 1163
                + +     H  C    C  RLT       TR   +  ++  +  +AT +NSLS    
Sbjct:  1009 CIYERLTGDSNH--CPFANCNVRLTISSLSSKTR---LDDAMPDMQERAT-SNSLSPCSD 1062

Query:  1164 GQEIPTDYSDSKLVEA 1179
              +++P  Y  SK+  A
Sbjct:  1063 -EDLP--YGSSKIKAA 1075
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009553 "embryo sac development" evidence=IMP
TAIR|locus:2008096 AT1G50410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095360 AT3G20010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089318 AT3G16600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC23E6.02 rrp2 "ATP-dependent DNA helicase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030172 AN5483 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2158357 AT5G43530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3306 hltf "helicase-like transcription factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2207175 AT1G05120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272082 DDB_G0272082 "CHR group protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.12LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CHR935
chromatin remodeling complex subunit (800 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1416
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 1e-54
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 9e-36
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 4e-29
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 7e-24
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 2e-21
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 3e-17
smart0049082 smart00490, HELICc, helicase superfamily c-termina 5e-17
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 2e-10
smart0018440 smart00184, RING, Ring finger 3e-08
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 8e-08
cd0016245 cd00162, RING, RING-finger (Really Interesting New 1e-07
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 4e-07
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 7e-07
pfam0009740 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING 4e-04
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 4e-04
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 5e-04
COG5574271 COG5574, PEX10, RING-finger-containing E3 ubiquiti 0.004
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information 
 Score =  192 bits (490), Expect = 1e-54
 Identities = 109/425 (25%), Positives = 162/425 (38%), Gaps = 140/425 (32%)

Query: 653  HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLET 712
            +Q   ++W++  E++ L   GGILAD+ GLGKT+ TIAL+                    
Sbjct: 1    YQLEGVNWLISLESNGL---GGILADEMGLGKTLQTIALLATY----------------- 40

Query: 713  LNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL 772
              L E  +     G  LV        V P                            S L
Sbjct: 41   --LKEGKD---RRGPTLV--------VCP---------------------------LSTL 60

Query: 773  RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE------LAKFDVVITTYSIVSMEVPKQ 826
              W  E         +L V+VYHG  R +          L  +DVVITTY ++       
Sbjct: 61   HNWLNEFE---KWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTYEVL------- 110

Query: 827  PLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLA 886
               DK+                                                    L 
Sbjct: 111  -RKDKKLLSL------------------------------------------------LN 121

Query: 887  KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 946
            KV W RVVLDEA  +KN ++++ +A   L+ + R  L+GTPIQN +++L++   FLR  P
Sbjct: 122  KVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPGP 181

Query: 947  FAVYKSFCSMIKVPI-----SKNPV-----KGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 996
            F  +K F     +PI     +KN       +G  +L  +LK  +LRRTK  +        
Sbjct: 182  FGSFKVFEEWFNIPIANTADNKNKNLEKGKEGINRLHKLLKPFLLRRTKDDVEKS----- 236

Query: 997  LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1056
            LPPK   +   + +DE+R  Y +L    R         G       ++L ++++LR+ C+
Sbjct: 237  LPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVGIASLLNLIMQLRKICN 296

Query: 1057 HPLLV 1061
            HP L 
Sbjct: 297  HPYLF 301

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1416
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG0387 923 consensus Transcription-coupled repair protein CSB 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG1015 1567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG0298 1394 consensus DEAD box-containing helicase-like transc 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
PRK13766 773 Hef nuclease; Provisional 99.98
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.94
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.92
PHA02558501 uvsW UvsW helicase; Provisional 99.91
KOG1123776 consensus RNA polymerase II transcription initiati 99.86
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.82
PTZ00110545 helicase; Provisional 99.81
KOG0354 746 consensus DEAD-box like helicase [General function 99.8
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.8
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.79
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.79
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.79
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.78
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 99.77
PTZ00424401 helicase 45; Provisional 99.77
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.76
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 99.76
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.76
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.75
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.73
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.72
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 99.7
PRK10689 1147 transcription-repair coupling factor; Provisional 99.69
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.69
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.67
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.66
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.62
PRK13767 876 ATP-dependent helicase; Provisional 99.59
PRK02362 737 ski2-like helicase; Provisional 99.59
PRK01172 674 ski2-like helicase; Provisional 99.54
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.53
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.53
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.53
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.52
PRK00254 720 ski2-like helicase; Provisional 99.51
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 99.45
PRK09200 790 preprotein translocase subunit SecA; Reviewed 99.44
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.42
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.41
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.41
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.4
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.4
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.4
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.39
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 99.37
smart00487201 DEXDc DEAD-like helicases superfamily. 99.35
PHA02653 675 RNA helicase NPH-II; Provisional 99.34
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.33
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.33
PRK05580679 primosome assembly protein PriA; Validated 99.33
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.3
COG4096 875 HsdR Type I site-specific restriction-modification 99.28
PRK09401 1176 reverse gyrase; Reviewed 99.27
smart0049082 HELICc helicase superfamily c-terminal domain. 99.26
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.25
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.2
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.18
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.17
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.16
KOG4284 980 consensus DEAD box protein [Transcription] 99.16
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.14
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.13
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.13
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 99.13
COG1205 851 Distinct helicase family with a unique C-terminal 99.11
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.11
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.1
KOG0343 758 consensus RNA Helicase [RNA processing and modific 99.08
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 99.07
KOG0348 708 consensus ATP-dependent RNA helicase [RNA processi 99.06
COG1204 766 Superfamily II helicase [General function predicti 99.03
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.03
COG1202 830 Superfamily II helicase, archaea-specific [General 99.02
KOG0339 731 consensus ATP-dependent RNA helicase [RNA processi 99.02
PRK14701 1638 reverse gyrase; Provisional 99.01
PRK09694 878 helicase Cas3; Provisional 99.0
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 98.98
PRK12904 830 preprotein translocase subunit SecA; Reviewed 98.98
KOG0338 691 consensus ATP-dependent RNA helicase [RNA processi 98.96
PRK13107 908 preprotein translocase subunit SecA; Reviewed 98.95
COG4889 1518 Predicted helicase [General function prediction on 98.93
KOG0345 567 consensus ATP-dependent RNA helicase [RNA processi 98.92
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 98.88
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 98.83
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 98.72
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.7
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 98.62
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 98.61
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.59
PRK12326 764 preprotein translocase subunit SecA; Reviewed 98.59
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 98.57
KOG0334 997 consensus RNA helicase [RNA processing and modific 98.54
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 98.53
COG1203 733 CRISPR-associated helicase Cas3 [Defense mechanism 98.53
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 98.48
COG0556663 UvrB Helicase subunit of the DNA excision repair c 98.48
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 98.46
PF11496297 HDA2-3: Class II histone deacetylase complex subun 98.37
PRK05298652 excinuclease ABC subunit B; Provisional 98.36
COG4098441 comFA Superfamily II DNA/RNA helicase required for 98.34
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.33
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 98.3
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 98.3
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 98.28
PF13871 278 Helicase_C_4: Helicase_C-like 98.27
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 98.2
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 98.12
KOG0327397 consensus Translation initiation factor 4F, helica 98.02
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 98.01
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 97.94
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 97.83
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 97.83
COG1198730 PriA Primosomal protein N' (replication factor Y) 97.78
KOG0347 731 consensus RNA helicase [RNA processing and modific 97.64
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 97.61
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 97.59
KOG0353 695 consensus ATP-dependent DNA helicase [General func 97.46
KOG0953 700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 97.41
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 97.39
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 97.37
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 97.37
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 97.32
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.29
CHL00122 870 secA preprotein translocase subunit SecA; Validate 97.18
KOG0346 569 consensus RNA helicase [RNA processing and modific 97.15
PRK15483 986 type III restriction-modification system StyLTI en 97.11
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 97.0
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 96.95
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 96.89
smart0050463 Ubox Modified RING finger domain. Modified RING fi 96.81
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 96.79
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 96.71
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 96.7
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 96.66
KOG0352 641 consensus ATP-dependent DNA helicase [Replication, 96.43
COG0610 962 Type I site-specific restriction-modification syst 96.42
KOG0337 529 consensus ATP-dependent RNA helicase [RNA processi 96.39
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 96.22
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 96.08
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 95.96
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 95.96
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 95.78
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 95.72
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 95.59
PHA02929238 N1R/p28-like protein; Provisional 95.5
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 95.47
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.29
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 95.23
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 95.05
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 94.73
smart00488289 DEXDc2 DEAD-like helicases superfamily. 94.64
smart00489289 DEXDc3 DEAD-like helicases superfamily. 94.64
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 94.47
cd0016245 RING RING-finger (Really Interesting New Gene) dom 94.37
PHA02926242 zinc finger-like protein; Provisional 94.35
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 94.04
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 93.92
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 93.81
PF1463444 zf-RING_5: zinc-RING finger domain 93.7
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 93.3
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 93.18
PRK10536262 hypothetical protein; Provisional 93.08
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 92.77
COG3587 985 Restriction endonuclease [Defense mechanisms] 92.64
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 92.48
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 92.29
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 92.22
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 91.35
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 91.09
TIGR00376637 DNA helicase, putative. The gene product may repre 90.81
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 90.71
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 90.69
PRK14873665 primosome assembly protein PriA; Provisional 90.65
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 89.68
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 89.15
KOG0824324 consensus Predicted E3 ubiquitin ligase [Posttrans 89.08
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 89.01
smart00492141 HELICc3 helicase superfamily c-terminal domain. 88.56
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 88.25
KOG0311381 consensus Predicted E3 ubiquitin ligase [Posttrans 87.89
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 87.44
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 86.89
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 86.2
COG5220314 TFB3 Cdk activating kinase (CAK)/RNA polymerase II 86.07
COG5152259 Uncharacterized conserved protein, contains RING a 85.8
KOG0347731 consensus RNA helicase [RNA processing and modific 85.35
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 84.74
PRK10875615 recD exonuclease V subunit alpha; Provisional 84.49
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 84.43
KOG2177386 consensus Predicted E3 ubiquitin ligase [Posttrans 83.9
COG5222427 Uncharacterized conserved protein, contains RING Z 83.62
smart00491142 HELICc2 helicase superfamily c-terminal domain. 83.35
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 83.16
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 82.82
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 82.7
KOG1803649 consensus DNA helicase [Replication, recombination 82.2
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 81.47
KOG0922 674 consensus DEAH-box RNA helicase [RNA processing an 81.04
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 80.9
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 80.53
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 80.23
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-104  Score=895.07  Aligned_cols=576  Identities=41%  Similarity=0.700  Sum_probs=479.0

Q ss_pred             CCCCCCccccCCchHHHHHHHHHHHhhccCCCCCCcEEEecCCCchHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000566          639 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE  718 (1416)
Q Consensus       639 ~~~P~g~l~~~L~phQk~al~wMl~~E~~~~~~~GGILADEMGLGKTl~aIALI~~~r~~~~~~~~~~k~~~~~~~~~~~  718 (1416)
                      +.+|.+ +..||+|||+++|+|+..+|.+..  .|||||||||+|||+|+|||++..-                      
T Consensus       175 aeqP~d-lii~LL~fQkE~l~Wl~~QE~Ss~--~GGiLADEMGMGKTIQtIaLllae~----------------------  229 (791)
T KOG1002|consen  175 AEQPDD-LIIPLLPFQKEGLAWLTSQEESSV--AGGILADEMGMGKTIQTIALLLAEV----------------------  229 (791)
T ss_pred             ccCccc-ceecchhhhHHHHHHHHHhhhhhh--ccceehhhhccchHHHHHHHHHhcc----------------------
Confidence            556776 578999999999999999999876  8999999999999999999998631                      


Q ss_pred             ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000566          719 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS  798 (1416)
Q Consensus       719 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~  798 (1416)
                                                              ..+|||||||.-.+.||.+||.+|..  +.+++++|||.+
T Consensus       230 ----------------------------------------~ra~tLVvaP~VAlmQW~nEI~~~T~--gslkv~~YhG~~  267 (791)
T KOG1002|consen  230 ----------------------------------------DRAPTLVVAPTVALMQWKNEIERHTS--GSLKVYIYHGAK  267 (791)
T ss_pred             ----------------------------------------ccCCeeEEccHHHHHHHHHHHHHhcc--CceEEEEEeccc
Confidence                                                    12469999999999999999998865  789999999999


Q ss_pred             CCCCcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCccc
Q 000566          799 RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL  878 (1416)
Q Consensus       799 r~kd~~~L~~~DVVITTY~~l~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~d~~~~  878 (1416)
                      |.++..+|..||+|+|||.++.+++.++.               .         +.++|             .+     .
T Consensus       268 R~~nikel~~YDvVLTty~vvEs~yRk~~---------------~---------GfrrK-------------ng-----v  305 (791)
T KOG1002|consen  268 RDKNIKELMNYDVVLTTYAVVESVYRKQD---------------Y---------GFRRK-------------NG-----V  305 (791)
T ss_pred             ccCCHHHhhcCcEEEEecHHHHHHHHhcc---------------c---------ccccc-------------CC-----c
Confidence            99999999999999999999998775531               1         11111             00     1


Q ss_pred             ccccCcccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEeecccCCCChHHHHhhhhhccCCCccchH-------
Q 000566          879 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK-------  951 (1416)
Q Consensus       879 ~~~~~pL~~i~W~rVIlDEAH~IKN~~S~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~-------  951 (1416)
                      +.-+++|+++.|.|||+||||+||++.+.+++|++.|++.+||||||||+||++.|||++++||+..||..+-       
T Consensus       306 ~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~  385 (791)
T KOG1002|consen  306 DKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCA  385 (791)
T ss_pred             ccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccc
Confidence            2235789999999999999999999999999999999999999999999999999999999999999985331       


Q ss_pred             ------------------------HHHhhhccCCCCCc-----hhhHHHHHHHHhHhhhhhccccccCCCCccCCCCcEE
Q 000566          952 ------------------------SFCSMIKVPISKNP-----VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1002 (1416)
Q Consensus       952 ------------------------~F~~~~~~pi~k~~-----~~~~~~L~~lL~~~mLRRtK~dVldg~pii~LPpk~e 1002 (1416)
                                              .|......||.+..     ..++...+.+++.+|+||||-.-.+   -+.|||+.+
T Consensus       386 ~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAd---DLgLPPRiv  462 (791)
T KOG1002|consen  386 SLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERAD---DLGLPPRIV  462 (791)
T ss_pred             ccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhccccc---ccCCCccce
Confidence                                    22233345555432     2335678999999999999865444   267999999


Q ss_pred             EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchH
Q 000566         1003 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 1082 (1416)
Q Consensus      1003 ~vv~v~lS~eEr~~Y~~L~~~s~~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~~~e~a~~l~~ 1082 (1416)
                      .+.+--|+.+|.++|+.|...++..|..|+..|.+..+|++|+.+|.||||+++||.|+....           ...++.
T Consensus       463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~-----------~~n~~~  531 (791)
T KOG1002|consen  463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSA-----------NANLPD  531 (791)
T ss_pred             eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehh-----------hcCCCc
Confidence            999999999999999999999999999999999999999999999999999999999875321           011111


Q ss_pred             HHHHHHHHHhhhhccccccCCCCCCcchhcccCcccchhhhhhhhcc----CCCCCCCccccccccccchhhhhhhcccc
Q 000566         1083 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA----DDNQCPTRNCKIRLSLSSVFSKATLNNSL 1158 (1416)
Q Consensus      1083 e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgHifC~~Ci~e~l~~----~~~~Cp~~~C~~~l~~~~vf~~~~l~~~~ 1158 (1416)
                      +         .....+|++|.++.++++.+.|.|.||+.|+.+++..    ..-.||  .|...|+.+---.+ .....+
T Consensus       532 e---------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP--~C~i~LsiDlse~a-lek~~l  599 (791)
T KOG1002|consen  532 E---------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCP--VCHIGLSIDLSEPA-LEKTDL  599 (791)
T ss_pred             c---------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCc--cccccccccccchh-hhhcch
Confidence            1         2235789999999999999999999999999988754    234677  58877766511100 000000


Q ss_pred             ccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000566         1159 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1238 (1416)
Q Consensus      1159 ~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 1238 (1416)
                      .. ..          ....-.......|..|.|+++|.|.|.-+.+.                                 
T Consensus       600 ~~-Fk----------~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~r---------------------------------  635 (791)
T KOG1002|consen  600 KG-FK----------ASSILNRINMDDWQSSTKIEALVEELYFLRER---------------------------------  635 (791)
T ss_pred             hh-hh----------hHHHhhhcchhhhcchhHHHHHHHHHHHHHHc---------------------------------
Confidence            00 00          00000112334567899999999988775321                                 


Q ss_pred             cccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEe
Q 000566         1239 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1318 (1416)
Q Consensus      1239 ~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~ 1318 (1416)
                                          ....|.|||||||+|||+|+..|.+.|+..+.+.|+|++++|.+.|+.|.++++++||||
T Consensus       636 --------------------d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv  695 (791)
T KOG1002|consen  636 --------------------DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV  695 (791)
T ss_pred             --------------------ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence                                156799999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCcc
Q 000566         1319 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1398 (1416)
Q Consensus      1319 StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRvhRIGQtr~V~VyrLi~kdTIEErIl~lq~~K~~l~~~~~g~d~~ 1398 (1416)
                      |++|||+.|||+.|++|++|||||||+++.||.+|+|||||.|||.|+||++++|||++|+++|++|..|+.+.+|+++.
T Consensus       696 SLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~  775 (791)
T KOG1002|consen  696 SLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEE  775 (791)
T ss_pred             EeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999874


Q ss_pred             CcccccCCHHHHHHhhc
Q 000566         1399 GGQQTRLTVDDLNYLFM 1415 (1416)
Q Consensus      1399 ~~~~~~lt~~DL~~Lf~ 1415 (1416)
                        .+.+||++||++||.
T Consensus       776 --Ai~kLt~eDmqfLF~  790 (791)
T KOG1002|consen  776 --AISKLTEEDMQFLFN  790 (791)
T ss_pred             --HHHhcCHHHHHHHhc
Confidence              467999999999995

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1416
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 5e-20
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 1e-17
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 1e-19
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 5e-17
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 2e-19
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 7e-18
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 8e-18
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure 
Iteration: 1

 Score = 97.4 bits (241), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 885  LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 944
            L +V W  +V+DEAQ+IKN +T++ +A   L++K R  L+GTPI+N +DDL+S   FL  
Sbjct: 145  LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNP 204
Query: 945  DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1004
                 Y  F S    PI K      ++L+A++   +LRRTK    D   I +LP K+   
Sbjct: 205  GLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTK---YDKAIINDLPDKIETN 261
Query: 1005 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1063
               + T E+   Y        + F    +   +K+  + IL  LL+L+Q  DHP L+KG
Sbjct: 262  VYCNLTPEQAAMYKA---EVENLFNNIDSVTGIKRKGM-ILSTLLKLKQIVDHPALLKG 316
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1416
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 1e-60
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 4e-14
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-58
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-41
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 2e-10
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 3e-09
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 8e-36
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-19
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 4e-07
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-06
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 1e-32
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 5e-11
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 7e-06
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 9e-30
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-17
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 2e-08
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 9e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 1e-09
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 5e-09
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 7e-09
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 1e-08
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 3e-08
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 3e-08
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 4e-08
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 2e-07
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 2e-07
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 4e-07
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 9e-07
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 1e-06
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 3e-06
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 4e-06
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 4e-06
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 5e-06
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 5e-06
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 8e-06
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 1e-05
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 1e-05
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 2e-05
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 2e-05
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 5e-05
1z6u_A150 NP95-like ring finger protein isoform B; structura 6e-05
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 1e-04
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 1e-04
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 1e-04
2ecw_A85 Tripartite motif-containing protein 30; metal bind 2e-04
2ysj_A63 Tripartite motif-containing protein 31; ring-type 7e-04
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 8e-04
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
 Score =  208 bits (531), Expect = 1e-60
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 1254 IDSIKLGGEKAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDFNTLPE 1312
            I+     G+K  +F+Q+  M  ++   + K+ + +   L G +S   RD  +  F   P 
Sbjct: 105  IEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS 164

Query: 1313 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1372
            V  +++S+KA   G+N+ +A  V+  D WWNP  EDQA DR +RIGQTR V V +L    
Sbjct: 165  VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224

Query: 1373 TVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
            T+E++I  L   KR +        ++    T L+ ++L  + 
Sbjct: 225  TLEEKIDQLLAFKRSLFKDIISSGDSWI--TELSTEELRKVI 264
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1416
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 3e-23
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 2e-22
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 4e-07
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 4e-20
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 9e-09
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 1e-13
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 8e-13
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 4e-08
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 3e-11
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 3e-11
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 4e-08
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 5e-08
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 6e-08
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 4e-06
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 3e-05
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 5e-05
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 3e-04
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 3e-04
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 5e-04
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 0.004
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 98.2 bits (243), Expect = 3e-23
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 1262 EKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1320
            +K  +F+Q+  M  ++   ++   + +   L G +S   RD  +  F   P V  +++S+
Sbjct: 86   DKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 145

Query: 1321 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1380
            KA   G+N+ +A  V+  D WWNP  EDQA DR +RIGQTR V V +L    T+E++I  
Sbjct: 146  KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQ 205

Query: 1381 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1414
            L   KR +        ++    T L+ ++L  + 
Sbjct: 206  LLAFKRSLFKDIISSGDS--WITELSTEELRKVI 237
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1416
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.88
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.85
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.79
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.76
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.75
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.73
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.7
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.67
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.63
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.61
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.6
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.54
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.43
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.39
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.39
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.29
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.17
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.1
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.09
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 98.96
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 98.93
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 98.91
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 98.9
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 98.84
d1a1va2 299 HCV helicase domain {Human hepatitis C virus (HCV) 98.69
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 98.66
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.64
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.58
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.55
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 98.55
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 98.54
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.53
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.53
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 98.42
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.26
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.22
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.22
d1yksa2 299 YFV helicase domain {Yellow fever virus [TaxId: 11 97.85
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 97.7
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 97.66
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 97.42
d2c2la280 STIP1 homology and U box-containing protein 1, STU 97.19
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 97.18
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.15
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 97.1
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 96.85
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 96.76
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 96.37
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 96.32
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 96.13
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.05
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 95.41
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 95.38
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 95.1
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 94.95
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 94.94
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 94.75
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 93.23
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 92.95
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 89.32
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 86.56
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=0  Score=360.22  Aligned_cols=264  Identities=25%  Similarity=0.376  Sum_probs=207.7

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             79983799998049999999999999998999999997084301299999999999997158100024574045664799
Q 000566          996 NLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVE 1075 (1416)
Q Consensus       996 ~LPpk~e~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRqac~HP~Lv~~~~~~s~~~~s~e 1075 (1416)
                      .||||++.+++|+||+.|+++|+.+....+..     ..........++|..+++|||+|+||.|+......        
T Consensus         8 ~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~-----~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~--------   74 (346)
T d1z3ix1           8 YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLT--------   74 (346)
T ss_dssp             TSCCEEEEEEEECCCHHHHHHHHHHHHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHH--------
T ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCC--------
T ss_conf             08898799999697999999999999989999-----86544871689999999999995799886111102--------


Q ss_pred             HHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             98416089999999986530011366799987311013584111234643201389988885322334322012342102
Q 000566         1076 MAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLN 1155 (1416)
Q Consensus      1076 ~a~~l~~e~~~~ll~~le~~~~~C~iC~~~~e~~vlt~CgHifC~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v~~~~~l~ 1155 (1416)
                         .             ..          ..+.                     .....                     
T Consensus        75 ---~-------------~~----------~~~~---------------------~~~~~---------------------   86 (346)
T d1z3ix1          75 ---G-------------EE----------GFDG---------------------ALDLF---------------------   86 (346)
T ss_dssp             ---T-------------CT----------TCTT---------------------GGGTS---------------------
T ss_pred             ---C-------------CC----------CCCC---------------------HHHHC---------------------
T ss_conf             ---2-------------11----------2320---------------------03312---------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33236899998888888742235886778544537899999999960278898655543223447886689999998899
Q 000566         1156 NSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGG 1235 (1416)
Q Consensus      1156 ~~~~~~~~~~~i~~~~s~~e~~~~~~~~~~~~~ssKikallelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1235 (1416)
                                  +..        ..........|+|+..+.++|..+.                                
T Consensus        87 ------------~~~--------~~~~~~~~~~S~Kl~~L~~ll~~~~--------------------------------  114 (346)
T d1z3ix1          87 ------------PQN--------YSTKAVEPQLSGKMLVLDYILAMTR--------------------------------  114 (346)
T ss_dssp             ------------CSS--------CCSSSCCGGGSHHHHHHHHHHHHHH--------------------------------
T ss_pred             ------------CCC--------CCCCCCCCCCCHHHHHHHHHHHHHH--------------------------------
T ss_conf             ------------334--------1000014001789999999999988--------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCC-CCC
Q ss_conf             8643420356899842022010159972999916587899999999816992882389979999999999970599-953
Q 000566         1236 DTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVS 1314 (1416)
Q Consensus      1236 ~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~eR~~aI~~Fn~d~-ev~ 1314 (1416)
                                            ...++|+||||+|+.++++|+.+|...|+.|.+++|+++..+|.+++++|+++. ...
T Consensus       115 ----------------------~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~  172 (346)
T d1z3ix1         115 ----------------------TTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEF  172 (346)
T ss_dssp             ----------------------HHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCC
T ss_pred             ----------------------HHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf             ----------------------7518951688630145679999976300241101110027889999986510234330


Q ss_pred             EEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99961442123468555698999838999590989989320139989599999984999999999999999999998818
Q 000566         1315 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1394 (1416)
Q Consensus      1315 VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAigRvhRiGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~~lg 1394 (1416)
                      |||+++++||+||||+.|++||+|||+|||+.+.||+||+||+||+++|+||||++++||||+|+++|..|+.++..+++
T Consensus       173 vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~  252 (346)
T d1z3ix1         173 IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVD  252 (346)
T ss_dssp             EEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCS
T ss_pred             EEEECCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             25403314443356564307999457886155867633340348998438999873898999999999999999998758


Q ss_pred             CCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             9866763446899999974319
Q 000566         1395 EDETGGQQTRLTVDDLNYLFMV 1416 (1416)
Q Consensus      1395 ~d~~~~~~~~lt~~DL~~LF~~ 1416 (1416)
                      ++..  ....++.+||+.||.+
T Consensus       253 ~~~~--~~~~~~~~~l~~lf~~  272 (346)
T d1z3ix1         253 EEQD--VERHFSLGELRELFSL  272 (346)
T ss_dssp             CSSS--CCCSSCHHHHHHHTCC
T ss_pred             CCHH--HHHCCCHHHHHHHHCC
T ss_conf             8655--5402899999999647
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure