Citrus Sinensis ID: 000568
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1416 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR4 | 1054 | Putative disease resistan | yes | no | 0.677 | 0.910 | 0.359 | 1e-179 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.655 | 0.956 | 0.351 | 1e-142 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.670 | 0.956 | 0.350 | 1e-142 | |
| Q9LRR5 | 1424 | Putative disease resistan | no | no | 0.612 | 0.609 | 0.348 | 1e-140 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.641 | 0.928 | 0.342 | 1e-139 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.670 | 0.960 | 0.344 | 1e-139 | |
| Q38834 | 852 | Disease resistance RPP13- | no | no | 0.555 | 0.922 | 0.267 | 6e-58 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.561 | 0.873 | 0.270 | 1e-51 | |
| Q9M667 | 835 | Disease resistance protei | no | no | 0.524 | 0.889 | 0.265 | 3e-48 | |
| Q9C646 | 899 | Probable disease resistan | no | no | 0.454 | 0.715 | 0.275 | 3e-47 |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 630 bits (1625), Expect = e-179, Method: Compositional matrix adjust.
Identities = 392/1091 (35%), Positives = 603/1091 (55%), Gaps = 131/1091 (12%)
Query: 1 MSIIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLV-KWKRMLVKIKAVLDDAEEKQ 59
M+ IGE L A ++ L L S+ + F + ++ +L+ + L+ I AVL DAEEKQ
Sbjct: 1 MTGIGEMFLAAFLQALFQTLVSEPFRSFFKRRELNENLLERLSTALLTITAVLIDAEEKQ 60
Query: 60 RTDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTT 119
T+ V+ W+ +L ++ + ED L++ TEA R + + S++
Sbjct: 61 ITNPVVEKWVNELRDVVYHAEDALDDIATEALRLNI----------------GAESSSSN 104
Query: 120 KFRKLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQ 179
+ R+L LD E+ + ++++++ R + + +Q+++L LKE +A K Q
Sbjct: 105 RLRQLRGRMSLGDFLDG-NSEH-LETRLEKVTIRLERLASQRNILGLKELTAMIPK---Q 159
Query: 180 RLPTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 239
RLPTTSLV+E++V+GR+ +K EI+ L+ ++ + D G +V+ I+G+GG+GKTTL+QL+YN
Sbjct: 160 RLPTTSLVDESEVFGRDDDKDEIMRFLIPENGK-DNGITVVAIVGIGGVGKTTLSQLLYN 218
Query: 240 DHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK--K 297
D V+ +F K W VS +FDV ++TK + +T + + +DL++LQ +L ++L+
Sbjct: 219 DQHVRSYFGTKVWAHVSEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLP 278
Query: 298 FLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDD 357
FLLVLDD+WNEN+ DW + +P A GS+I+VTTR+Q V +IM + L+ LS D
Sbjct: 279 FLLVLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGD 338
Query: 358 CLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLN 417
C S+F + +++ N+ + ++ ++IV KC GLPLA KTLGG+LR + +WE VL+
Sbjct: 339 CWSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLS 398
Query: 418 SNIWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLD 477
S IWDLP D+ +LP LRVSYYYL LK+CFAYCS+ PK + FE+++++LLW+AEGFL
Sbjct: 399 SRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQ 458
Query: 478 HEDRDEEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTL 537
+ EELG+++F EL SRS +K+ ++++MHD +N+LA++A+GE
Sbjct: 459 QTRSSKNLEELGNEYFSELESRSLLQKTK---TRYIMHDFINELAQFASGE----FSSKF 511
Query: 538 EVNKQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQ 597
E + ++S R+LSY+R Y F ++K+LRTFL + L+N+SR ++ +
Sbjct: 512 EDGCKLQVSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSE 571
Query: 598 LL--KLQQLRVFTV---------------------LNLSRTNIRNLPESITKLYNLHTLL 634
L L +LRV ++ L+LSRT + LP+S+ +YNL TLL
Sbjct: 572 KLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLL 631
Query: 635 LEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRL 694
L C LK L DI NLI L +L T L++MP RFG+L LQTL F V GSR+
Sbjct: 632 LSYCSSLKELPTDISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRI 690
Query: 695 RELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRW------ARNSFDSRV 748
EL L L G L I L+ V V DA EA+L+ KK+L+ + W + N+ +
Sbjct: 691 SELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHR 750
Query: 749 PETETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVG 808
+ E V + L+PH+++E+ I Y+G +FP WL D S S++V ++ + C CTSLPS+G
Sbjct: 751 TQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLG 810
Query: 809 QLRSLKHLEVRGMSGVKRLSLEFYGN------DSPIPFPCLETLHFEDMKEWEEW----I 858
QL LK L + GM G++ + +FY + PF LETL F+++ +W+EW +
Sbjct: 811 QLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRV 870
Query: 859 PRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKF 918
RG + FP L++L I RC +L GTLP LP+L
Sbjct: 871 TRG-----DLFPSLKKLFILRCPELTGTLPTFLPSL------------------------ 901
Query: 919 KIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQG 978
+ LHI C L E + L LS K S C
Sbjct: 902 ------------------ISLHIYKCGLLDFQPDHHEYSYRNLQTLSIK------SSCDT 937
Query: 979 LVTLPQSLLNLSSLREIYIRSCSSLVSF----PEVALPSKLRLITIWDCEALKSLPEAWM 1034
LV P L + ++L ++ + C+SL S + P+ LR + I DC+ L+ LP+
Sbjct: 938 LVKFP--LNHFANLDKLEVDQCTSLYSLELSNEHLRGPNALRNLRINDCQNLQLLPKLNA 995
Query: 1035 CETNSSLEILN 1045
N + I N
Sbjct: 996 LPQNLQVTITN 1006
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust.
Identities = 372/1058 (35%), Positives = 551/1058 (52%), Gaps = 130/1058 (12%)
Query: 10 KACIELLVDKLTS--KG--LQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTDQSV 65
+A I++L+D LTS KG + F Q++ Q + M I+AVL+DA+EKQ ++ +
Sbjct: 3 EAFIQVLLDNLTSFLKGELVLLFGFQDEFQ----RLSSMFSTIQAVLEDAQEKQLNNKPL 58
Query: 66 KMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFRKLI 125
+ WL L+ ++V+D+L+E++T+A R Q+ R K+I
Sbjct: 59 ENWLQKLNAATYEVDDILDEYKTKATR--------------FSQSEYGRYHP-----KVI 99
Query: 126 PTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQRLPTTS 185
P F + + ++ ++ + + I ++ L E ++A++R T S
Sbjct: 100 P------------FRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIV--ERQAVRR-ETGS 144
Query: 186 LVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD 245
++ E +VYGR+ EK EIV++L+ +++ + SV+PI+GMGGLGKTTLAQ+V+ND RV +
Sbjct: 145 VLTEPQVYGRDKEKDEIVKILI-NNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTE 203
Query: 246 HFDLKAWTCVSNDFDVIRLTKTILRCIT-KQTIDDSDLNLLQEELNKQLSRKKFLLVLDD 304
HF K W CVS DFD RL K I+ I + + + DL LQ++L + L+ K++LLVLDD
Sbjct: 204 HFHSKIWICVSEDFDEKRLIKAIVESIEGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDD 263
Query: 305 VWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFTQ 364
VWNE+ W ++ L+ GA G+ ++ TTR ++V +IMGT Y+L LS +DC +F Q
Sbjct: 264 VWNEDQQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQ 323
Query: 365 HSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLP 424
+ ++ N +L IGK+IV K G+PLAAKTLGG+L K WE V +S IW+LP
Sbjct: 324 RAFGHQE-EINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLP 382
Query: 425 EDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEE 484
+D ILPALR+SY+ L LKQCFAYC++ PKD + E+E++I LW+A GFL + + E
Sbjct: 383 QDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKG-NME 441
Query: 485 KEELGHQFFQELCSRSFFE--KSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNKQ 542
E++G + ++EL RSFF+ + + + F MHDL++DLA N
Sbjct: 442 LEDVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLAT-----------SLFSANTS 490
Query: 543 QRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQL-LKL 601
R + SY G FY + L F+S+ + N L S ++L +
Sbjct: 491 SSNIREINKHSYTHMMSIGFAEVVFFYTLPPLEKFISLRVLN-----LGDSTFNKLPSSI 545
Query: 602 QQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSN 661
L LNL + +R+LP+ + KL NL TL L+ C +L L + L L +L
Sbjct: 546 GDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDG 605
Query: 662 TISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDA 721
+ SL MP R G LTCL+TL FVVG +G +L EL L +L G++ IS+LE VK+ DA
Sbjct: 606 SQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNL-NLYGSIKISHLERVKNDKDA 664
Query: 722 KEAHLSGKKNLKVLLLRWARNSFDSRVPET-ETRVLDMLKPHQNLEEFCINGYRGTKFPI 780
KEA+LS K NL L + W N+F + E+ E +VL+ LKPH NL I G+RG P
Sbjct: 665 KEANLSAKGNLHSLSMSW--NNFGPHIYESEEVKVLEALKPHSNLTSLKIYGFRGIHLPE 722
Query: 781 WLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPF 840
W+ S L +V++ C+ LP G L L+ LE+ S
Sbjct: 723 WMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWGSA----------------- 765
Query: 841 PCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLP----ERLPALEM 896
E ++E + + G I FP LR+L I L+G L E+ P LE
Sbjct: 766 ------DVEYVEEVDIDVHSGFPTRIR-FPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEE 818
Query: 897 FVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQ 956
+I C L +S +L AL +I C N + EE
Sbjct: 819 MIIHECPFLTLSS-NLRALTSLRI-----------------------CYNKVATSFPEEM 854
Query: 957 EQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALP--SK 1014
+ L+YL +S C L LP SL +L++L+ + I+ C +L S PE L S
Sbjct: 855 FKNL-----ANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSS 909
Query: 1015 LRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSL 1052
L + + C LK LPE + ++L L I GC L
Sbjct: 910 LTELFVEHCNMLKCLPEG--LQHLTTLTSLKIRGCPQL 945
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 371/1059 (35%), Positives = 548/1059 (51%), Gaps = 110/1059 (10%)
Query: 10 KACIELLVDKLTSKGLQFFAHQE-----QIQADLVKWKRMLVKIKAVLDDAEEKQRTDQS 64
+A +++L+D LT FF E + + K M I+AVL+DA+EKQ ++
Sbjct: 3 EAFLQVLLDNLT-----FFIQGELGLVFGFEKEFKKLSSMFSMIQAVLEDAQEKQLKYKA 57
Query: 65 VKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFRKL 124
+K WL L+ A++V+D+L++ +TEA R K A H +T
Sbjct: 58 IKNWLQKLNVAAYEVDDILDDCKTEAARFK-----QAVLGRYHPRT-------------- 98
Query: 125 IPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQRLPTT 184
I F Y + ++KE+ ++ I ++ L E ++ R T
Sbjct: 99 ------------ITFCYKVGKRMKEMMEKLDAIAEERRNFHLDERII---ERQAARRQTG 143
Query: 185 SLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ 244
++ E KVYGRE E+ EIV++L+ +++ V+PI+GMGGLGKTTLAQ+V+ND R+
Sbjct: 144 FVLTEPKVYGREKEEDEIVKILI-NNVSYSEEVPVLPILGMGGLGKTTLAQMVFNDQRIT 202
Query: 245 DHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDD 304
+HF+LK W CVS+DFD RL K I+ I +++ D DL LQ++L + L+ K++ LVLDD
Sbjct: 203 EHFNLKIWVCVSDDFDEKRLIKAIVESIEGKSLGDMDLAPLQKKLQELLNGKRYFLVLDD 262
Query: 305 VWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFTQ 364
VWNE+ W ++ L+ GA G+ I++TTR +++ +IMGT YQL LS +DC +F Q
Sbjct: 263 VWNEDQEKWDNLRAVLKIGASGASILITTRLEKIGSIMGTLQLYQLSNLSQEDCWLLFKQ 322
Query: 365 HSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLP 424
+ + +S K L EIGK+IV KC G+PLAAKTLGGLLR K S+WE V +S IW+LP
Sbjct: 323 RAFCHQTETSPK-LMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLP 381
Query: 425 EDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEE 484
+D +LPALR+SY++L L+QCFAYC++ PKD + E+E +I LW+A FL + + E
Sbjct: 382 QDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKG-NME 440
Query: 485 KEELGHQFFQELCSRSFFEKSSNDTSK--FVMHDLVNDLARWAAGEIYFIMEGTLEVNKQ 542
E++G++ + EL RSFF++ + K F MHDL++DLA + ++N +
Sbjct: 441 LEDVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDLAT-SMFSASASSRSIRQINVK 499
Query: 543 QRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQL-LKL 601
+Y G Y + F+S+ + N L+ S QL +
Sbjct: 500 DDEDMMFIVTNYKDMMSIGFSEVVSSYSPSLFKRFVSLRVLN-----LSNSEFEQLPSSV 554
Query: 602 QQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSN 661
L L+LS I +LP+ + KL NL TL L +C L L L L +L +
Sbjct: 555 GDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDH 614
Query: 662 TISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDA 721
L MP R G LTCL+TL FVVG +G +L EL+ L +LRG + I++LE VK+ +A
Sbjct: 615 C-PLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL-NLRGAISITHLERVKNDMEA 672
Query: 722 KEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPIW 781
KEA+LS K NL L + W R +R E +VL+ LKPH NL+ I + G P W
Sbjct: 673 KEANLSAKANLHSLSMSWDR---PNRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDW 729
Query: 782 LGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFP 841
+ S L +V++ C C+ LP G+L P
Sbjct: 730 MNHSVLKNVVSILISGCENCSCLPPFGEL------------------------------P 759
Query: 842 CLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTL----PERLPALEMF 897
CLE+L +D E++ FP LR+LHI L+G E+ P LE
Sbjct: 760 CLESLELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEM 819
Query: 898 VIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLI--LHIGGCPNLQSLVAEEE 955
I C V +S ++ K +I G S+ +L + L I + SL+ E
Sbjct: 820 KISDCPMFVFPTLS--SVKKLEIWGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMF 877
Query: 956 QEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALP--S 1013
+ + L YL +S+ + L LP SL +L++L+ + IR C +L S PE L S
Sbjct: 878 KNLENLI-------YLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLS 930
Query: 1014 KLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSL 1052
L + + C LK LPE + ++L L I GC L
Sbjct: 931 SLTELFVEHCNMLKCLPEG--LQHLTTLTSLKIRGCPQL 967
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 328/942 (34%), Positives = 486/942 (51%), Gaps = 74/942 (7%)
Query: 4 IGEAILKACIELLVDKL-TSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTD 62
+ + L +C ++V+++ TS+ L + A L + K LV VL DA+++
Sbjct: 1 MANSYLSSCANVMVERINTSQELVELCKGKSSSALLKRLKVALVTANPVLADADQRAEHV 60
Query: 63 QSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFR 122
+ VK WL + + F ED+L+E QTEA RR+++ E + R + K
Sbjct: 61 REVKHWLTGIKDAFFQAEDILDELQTEALRRRVV-AEAGGLGGLFQNLMAGREAIQKKIE 119
Query: 123 KLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESS-AGGSKKAMQRL 181
K E V+ ++ E + + E++ K+ + +E S+ L
Sbjct: 120 P--------------KMEKVV--RLLEHHVKHIEVIGLKEYSETREPQWRQASRSRPDDL 163
Query: 182 PTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241
P LV GR +K +V LLL DD + G +VI ++GM G+GKTTL ++V+ND+
Sbjct: 164 PQGRLV------GRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDY 217
Query: 242 RVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLV 301
RV +HF++K W +F+V +TK +L+ IT ++ DL LQ +L K LS K+FLLV
Sbjct: 218 RVTEHFEVKMWISAGINFNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLV 277
Query: 302 LDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSV 361
LDD W+E+ ++W GSKI++TTR++ V + YQ+K ++ ++C +
Sbjct: 278 LDDFWSESDSEWESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWEL 337
Query: 362 FTQHSLDSRDFSS-NKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNI 420
++ + + S N+ LE IGK+I +C GLPLAA+ + LR K P DW V
Sbjct: 338 ISRFAFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSK--- 394
Query: 421 WDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHED 480
+ ILP L++SY L P LK+CFA CS+ PK + F+ EE++LLW+A L
Sbjct: 395 -NFSSYTNSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPR 453
Query: 481 RDEEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVN 540
E++G+ + +L ++SFF++ + FVMHDL+NDLA+ +G+ F LE +
Sbjct: 454 SSRRLEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCF----RLEDD 509
Query: 541 KQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFL---------SIMLS-------- 583
I RH S+ R + D F ++LRT L S+ L+
Sbjct: 510 NIPEIPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLL 569
Query: 584 NNSRGYLACSILHQLL-----KLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDC 638
N G S+ H + L+ L++ L+LS T I+ LPE + L NL TLLL +C
Sbjct: 570 NALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNC 629
Query: 639 DRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELK 698
L +L I LI L L T L EMP KL LQ L NFV+G G+ L ELK
Sbjct: 630 RDLTSLPKSIAELINLRLLDLVGT-PLVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELK 688
Query: 699 FLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRW-------ARNSFDSRVPET 751
L HLRGTL IS L+NV +AK+A L K L L+L+W SF++ +
Sbjct: 689 ELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACD- 747
Query: 752 ETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLR 811
+ VL ML+PH +L+ FCI Y+G FP WLGDSS + ++ C +C SLP VGQL
Sbjct: 748 QKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLP 807
Query: 812 SLKHLEVRGMSGVKRLSLEFY---GNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEG 868
SLK+L + + ++++ L+F+ N +PF L+ L F M W+EWI E+E
Sbjct: 808 SLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWI----CPELED 863
Query: 869 --FPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVS 908
FP L++L I RC LR PE LP+ I C VS
Sbjct: 864 GIFPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISDCPLRAVS 905
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust.
Identities = 360/1052 (34%), Positives = 551/1052 (52%), Gaps = 143/1052 (13%)
Query: 8 ILKACIELLVDKLTS--KG--LQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTDQ 63
+ +A I++++D LTS KG + F Q++ Q + M I+AVL+DA+EKQ D+
Sbjct: 1 MAEAFIQVVLDNLTSFLKGELVLLFGFQDEFQ----RLSSMFSTIQAVLEDAQEKQLNDK 56
Query: 64 SVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFRK 123
++ WL L+ ++V+D+L+E++T+A R L H K
Sbjct: 57 PLENWLQKLNAATYEVDDILDEYKTKATR---FLQSEYGRYHP----------------K 97
Query: 124 LIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQRLPT 183
+IP F + + ++ ++ + I ++ L+E ++A R T
Sbjct: 98 VIP------------FRHKVGKRMDQVMKKLNAIAEERKKFHLQEKII--ERQAATR-ET 142
Query: 184 TSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV 243
S++ E +VYGR+ EK EIV++L+ + + SV+PI+GMGGLGKTTL+Q+V+ND RV
Sbjct: 143 GSVLTEPQVYGRDKEKDEIVKILI-NTASDAQKLSVLPILGMGGLGKTTLSQMVFNDQRV 201
Query: 244 QDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLD 303
+ F K W C+S+DF+ RL K I+ I +++ D DL LQ++L + L+ K++ LVLD
Sbjct: 202 TERFYPKIWICISDDFNEKRLIKAIVESIEGKSLSDMDLAPLQKKLQELLNGKRYFLVLD 261
Query: 304 DVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFT 363
DVWNE+ + W ++ L+ GA G+ ++ TTR ++V +IMGT Y+L LS +DC +F
Sbjct: 262 DVWNEDQHKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQPYELSNLSPEDCWFLFM 321
Query: 364 QHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDL 423
Q + ++ N +L IGK+IV KC G+PLAAKTLGG+LR K +WE V +S IW+L
Sbjct: 322 QRAFGHQE-EINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNL 380
Query: 424 PEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDE 483
P+D ILPALR+SY++L L+QCF YC++ PKD + +E +I W+A GFL + +
Sbjct: 381 PQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKG-NL 439
Query: 484 EKEELGHQFFQELCSRSFFEKSSNDTSK--FVMHDLVNDLARWAAGEIYFIMEGTLEVNK 541
E E++G++ + EL RSFF++ ++ K F MHDL++DLA +
Sbjct: 440 ELEDVGNEVWNELYLRSFFQEIEVESGKTYFKMHDLIHDLAT--------------SLFS 485
Query: 542 QQRISRNLRHLSYIRGEYDGVKRFAGF------YDIKYLRTFLSIMLSNNSRGYLACSIL 595
S N+R I YDG GF Y L+ F+S+ + N L S L
Sbjct: 486 ANTSSSNIRE---INANYDGYMMSIGFAEVVSSYSPSLLQKFVSLRVLN-----LRNSNL 537
Query: 596 HQL-LKLQQLRVFTVLNLSRT-NIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIK 653
+QL + L L+LS IRNLP+ + KL NL TL L CD L L L
Sbjct: 538 NQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGS 597
Query: 654 LHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLE 713
L +L + SL P R G LTCL++L FV+G +G +L ELK L +L G++ I+ L+
Sbjct: 598 LRNLL-LDGCSLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNL-NLYGSISITKLD 655
Query: 714 NVKHVGDAKEAHLSGKKNLKVLLLRW---ARNSFDSRVPETETRVLDMLKPHQNLEEFCI 770
VK DAKEA+LS K NL L L W ++ +DS VL+ LKPH NL+ I
Sbjct: 656 RVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDS-------EVLEALKPHSNLKYLEI 708
Query: 771 NGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLE 830
NG+ G + P W+ S L +V+++ + C C+ LP G+L
Sbjct: 709 NGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGEL-------------------- 748
Query: 831 FYGNDSPIPFPCLETLHFE----DMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGT 886
PCLE+L D++ E+ + G FP LR+L I S L+G
Sbjct: 749 ----------PCLESLELHTGSADVEYVEDNVHPGR------FPSLRKLVIWDFSNLKGL 792
Query: 887 LP----ERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIG 942
L ++ P LE C V+ +S ++ K+ V RS + +L + +
Sbjct: 793 LKMEGEKQFPVLEEMTFYWCPMFVIPTLS--SVKTLKVIVTDATVLRSIS-NLRALTSLD 849
Query: 943 GCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSS 1002
N+++ EE + L+YL +S+ + L LP SL +L++L+ + C +
Sbjct: 850 ISDNVEATSLPEEMFKSL-----ANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDA 904
Query: 1003 LVSFPEVALP--SKLRLITIWDCEALKSLPEA 1032
L S PE + + L +++ +C LK LPE
Sbjct: 905 LESLPEEGVKGLTSLTELSVSNCMMLKCLPEG 936
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 364/1058 (34%), Positives = 550/1058 (51%), Gaps = 109/1058 (10%)
Query: 4 IGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTDQ 63
+ EA L+ +E L + K + F +++ + K + I+AVL DA+EKQ D+
Sbjct: 1 MAEAFLQVLLENLTSFIGDKLVLIFGFEKECE----KLSSVFSTIQAVLQDAQEKQLKDK 56
Query: 64 SVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFRK 123
+++ WL L++ A++V+D+L E + EA R E + H
Sbjct: 57 AIENWLQKLNSAAYEVDDILGECKNEAIRF-----EQSRLGFYHPGI------------- 98
Query: 124 LIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQRLPT 183
I F + + ++KEI ++ I ++ E A R T
Sbjct: 99 -------------INFRHKIGRRMKEIMEKLDAISEERRKFHFLEKITERQAAAATR-ET 144
Query: 184 TSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV 243
++ E KVYGR+ E+ EIV++L+ +++ V PIIGMGGLGKTTLAQ+++ND RV
Sbjct: 145 GFVLTEPKVYGRDKEEDEIVKILI-NNVNVAEELPVFPIIGMGGLGKTTLAQMIFNDERV 203
Query: 244 QDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLD 303
HF+ K W CVS+DFD RL KTI+ I + + DL Q++L + L+ K++LLVLD
Sbjct: 204 TKHFNPKIWVCVSDDFDEKRLIKTIIGNIERSSPHVEDLASFQKKLQELLNGKRYLLVLD 263
Query: 304 DVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFT 363
DVWN++ W + L GA G+ I+ TTR ++V +IMGT Y L LS D L +F
Sbjct: 264 DVWNDDLEKWAKLRAVLTVGARGASILATTRLEKVGSIMGTLQPYHLSNLSPHDSLLLFM 323
Query: 364 QHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDL 423
Q + + +N +L IGK+IV KC G+PLAAKTLGGLLR K S+WE V ++ IW L
Sbjct: 324 QRAFGQQK-EANPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDNEIWSL 382
Query: 424 PEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDE 483
P+D ILPALR+SY++L L+QCFAYC++ PKD + +E +I LW+A GFL + +
Sbjct: 383 PQDESSILPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKG-NL 441
Query: 484 EKEELGHQFFQELCSRSFFE--KSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNK 541
E E++G++ + EL RSFF+ ++ + + F +HDL++DLA + +
Sbjct: 442 ELEDVGNEVWNELYLRSFFQEIEAKSGNTYFKIHDLIHDLAT-------SLFSASASCGN 494
Query: 542 QQRIS-RNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQL-L 599
+ I+ ++ +H I G Y L+ F+S+ + N L+ S L QL
Sbjct: 495 IREINVKDYKHTVSI-----GFAAVVSSYSPSLLKKFVSLRVLN-----LSYSKLEQLPS 544
Query: 600 KLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKN 659
+ L L+LS N R+LPE + KL NL TL + +C L L L L HL
Sbjct: 545 SIGDLLHLRYLDLSCNNFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLV- 603
Query: 660 SNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVG 719
+ L P R G LTCL+TL F+VG+ +G +L ELK L +L G++ I++LE VK+
Sbjct: 604 VDGCPLTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNL-NLCGSISITHLERVKNDT 662
Query: 720 DAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFP 779
DA EA+LS K NL+ L + W N +R E +VL+ LKPH NL+ I + G +FP
Sbjct: 663 DA-EANLSAKANLQSLSMSW-DNDGPNRYESKEVKVLEALKPHPNLKYLEIIAFGGFRFP 720
Query: 780 IWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIP 839
W+ S L K+++++ + C C LP G+L L++LE++ S +E+ D
Sbjct: 721 SWINHSVLEKVISVRIKSCKNCLCLPPFGELPCLENLELQNGSA----EVEYVEEDD--- 773
Query: 840 FPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLP----ERLPALE 895
+H R S++ FP L++L I L+G + E+ P LE
Sbjct: 774 ------VH-----------SRFSTR--RSFPSLKKLRIWFFRSLKGLMKEEGEEKFPMLE 814
Query: 896 MFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLI--LHIGGCPNLQSLVAE 953
I C V +S ++ K ++ G S+ +L + L IG SL
Sbjct: 815 EMAILYCPLFVFPTLS--SVKKLEVHGNTNTRGLSSISNLSTLTSLRIGANYRATSL--- 869
Query: 954 EEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALP- 1012
++ L+ LE+L + L LP SL +L++L+ + I SC SL SFPE L
Sbjct: 870 ---PEEMFTSLT-NLEFLSFFDFKNLKDLPTSLTSLNALKRLQIESCDSLESFPEQGLEG 925
Query: 1013 -SKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGC 1049
+ L + + C+ LK LPE T +L L ++GC
Sbjct: 926 LTSLTQLFVKYCKMLKCLPEGLQHLT--ALTNLGVSGC 961
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 239/895 (26%), Positives = 410/895 (45%), Gaps = 109/895 (12%)
Query: 6 EAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTDQSV 65
+A++ +E ++ L KG +++Q++ DL + L +++ L DAE ++RT++++
Sbjct: 3 DAVVTVFLEKTLNILEEKGRTVSDYRKQLE-DL---QSELKYMQSFLKDAERQKRTNETL 58
Query: 66 KMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFRKLI 125
+ + DL L ++ ED+L + Q A D ++ +RS+ +L
Sbjct: 59 RTLVADLRELVYEAEDILVDCQ-------------LADGDDGNE----QRSSNAWLSRLH 101
Query: 126 PTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKD-LLDLKESSAGGSKKAMQRLPTT 184
P + +Y +++EIN+R +I +Q + + S G R ++
Sbjct: 102 PA--------RVPLQYKKSKRLQEINERITKIKSQVEPYFEFITPSNVGRDNGTDRW-SS 152
Query: 185 SLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ 244
+ + +V G E +K++I E L R ND ++ +GMGGLGKTT+AQ V+ND ++
Sbjct: 153 PVYDHTQVVGLEGDKRKIKEWLFRS---NDSQLLIMAFVGMGGLGKTTIAQEVFNDKEIE 209
Query: 245 DHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDD 304
F+ + W VS F ++ ++ILR + ++ D D+ L ++ + L K++L+V+DD
Sbjct: 210 HRFERRIWVSVSQTFTEEQIMRSILRNLGDASVGD-DIGTLLRKIQQYLLGKRYLIVMDD 268
Query: 305 VWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTA--PAYQLKRLSTDDCLSVF 362
VW++N + W + + L G GS +IVTTR++ V + ++ + LS D+ +F
Sbjct: 269 VWDKNLSWWDKIYQGLPRGQGGS-VIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLF 327
Query: 363 TQHSLDSRDFSSNK-SLEEIGKKIVIKCNGLPLAAKTLGGLLRGK-HGPSDW-------E 413
+ + D + + LE++GK+IV KC GLPL K +GGLL K H +W +
Sbjct: 328 CNVAFAANDGTCERPELEDVGKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRIAEHFQ 387
Query: 414 DVLNSNIWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAE 473
D L N + ++ +L++SY L LK C SL P+D +++++ WI E
Sbjct: 388 DELRGNT----SETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGE 443
Query: 474 GFLDHEDRDEEKEELGHQFFQELCSRSFFEKSSNDTSKFV----MHDLVNDLARWAAGEI 529
GF+ + E G F L +R E S + +HD+V DL A +
Sbjct: 444 GFVMWRN-GRSATESGEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKD 502
Query: 530 YFI-----------MEGTLEVNKQQRISRNLRHL--SYIRGEYDGVKR--FAGFYDIKYL 574
F + G + KQ +++ LR + + GE + + F D KYL
Sbjct: 503 SFSNPEGLNCRHLGISGNFD-EKQIKVNHKLRGVVSTTKTGEVNKLNSDLAKKFTDCKYL 561
Query: 575 RTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTN-IRNLPESITKLYNLHTL 633
R + +S + IL ++ LQ L L+LS T+ + P S+ L+NL L
Sbjct: 562 RV---LDISKSIFDAPLSEILDEIASLQHL---ACLSLSNTHPLIQFPRSMEDLHNLQIL 615
Query: 634 LLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVG-NDRGS 692
C LK L I KL L +N SL+ P G L L+ L F ++ G
Sbjct: 616 DASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGC 675
Query: 693 RLRELKFLMHLRG-TLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPET 751
+L E+K L +LR L ++ + + +E L NL L+ + N +DS +
Sbjct: 676 KLSEVKNLTNLRKLGLSLTRGDQI------EEEELDSLINLSK-LMSISINCYDSYGDDL 728
Query: 752 ETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTS------LP 805
T++ + PHQ L E + Y G P WL L L +Y +C+ P
Sbjct: 729 ITKIDALTPPHQ-LHELSLQFYPGKSSPSWLSPHKLPML-----RYMSICSGNLVKMQEP 782
Query: 806 SVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPF---------PCLETLHFEDM 851
G + +E +S + L +++ +P+ P LE+ ED+
Sbjct: 783 FWGNENTHWRIEGLMLSSLSDLDMDWEVLQQSMPYLRTVTANWCPELESFAIEDV 837
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 259/957 (27%), Positives = 420/957 (43%), Gaps = 162/957 (16%)
Query: 6 EAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTDQSV 65
EAI+ +E L D+LT + QF +++I A+L K L +K+ L DAE K+ T Q V
Sbjct: 3 EAIVSFGVEKLWDRLTQEYEQFQGVEDRI-AEL---KSNLNLLKSFLKDAEAKKNTSQMV 58
Query: 66 KMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFRKLI 125
+ + ++ + +D E+++E F +L E A R + R++
Sbjct: 59 RHCVEEIKEIVYDTENMIETF---------ILKEAA-------------RKRSGIIRRIT 96
Query: 126 PTCCTTFTLDSIKFEYVMISKIKEINDRFQEIV-------TQKDLLDLKESSAGGSKKAM 178
C ++E+ S I I+ R +++ Q+ + D +SS ++
Sbjct: 97 KLTCIKVH----RWEFA--SDIGGISKRISKVIQDMHSFGVQQMISDGSQSSHLLQERER 150
Query: 179 QRLPTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVY 238
+ T S E+ G E K++V L+ +D ++ + GMGGLGKTTLA+ V+
Sbjct: 151 EMRQTFSRGYESDFVGLEVNVKKLVGYLVEED-----DIQIVSVTGMGGLGKTTLARQVF 205
Query: 239 NDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNL----LQEELNKQLS 294
N V+ FD AW CVS +F + + IL+ +T + D L + L +EL + L
Sbjct: 206 NHEDVKHQFDRLAWVCVSQEFTRKNVWQMILQNLTSRETKDEILQMEEAELHDELFQLLE 265
Query: 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLS 354
K L+V DD+W E DW + P+ G K+++T+R E +A+ G K
Sbjct: 266 TSKSLIVFDDIWKE--EDW-GLINPIFPPKKGWKVLITSRT-ETIAMHGNRRYVNFK--- 318
Query: 355 TDDCLSVFTQHSL---------DSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRG 405
+CL++ L D +F +K +E +GK+++ C GLPLA K LGGLL
Sbjct: 319 -PECLTILESWILFQRIAMPRVDESEFKVDKEMEMMGKQMIKYCGGLPLAVKVLGGLLAA 377
Query: 406 KHGPSDWEDVLNSNIW-------DLPE-DRCGILPALRVSYYYLSPPLKQCFAYCSLLPK 457
K+ DW+ L+ NI D + + + L +S+ L LK CF Y + P+
Sbjct: 378 KYTFHDWKR-LSENIGCHIVGRTDFSDGNNSSVYHVLSLSFEELPSYLKHCFLYLAHFPE 436
Query: 458 DYEFEEEEIILLWIAEGFLD-HEDRDEEKEELGHQFFQELCSRSFFEKSSNDTS-KFV-- 513
D+ + E++ W AEG L+ + ++G + +EL R+ + T+ +F
Sbjct: 437 DHNIKVEKLSYCWAAEGILEPRHYHGQTIRDVGESYIEELVRRNMVIAERDVTTLRFEAC 496
Query: 514 -MHDLVNDLARWAAGEIYFIMEGTL---EVNKQ------QRISRNLRHLSYIRGEYDGVK 563
+HD++ ++ A E F+ ++ N Q + +S+N L R
Sbjct: 497 HLHDMMREVCLLKAKEENFVQIASILPPTANSQYPGTSRRFVSQNPTTLHVSR------- 549
Query: 564 RFAGFYDIK--YLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLP 621
DI L++ L I+ N + + ++L+ LRV + ++ RNLP
Sbjct: 550 ------DINNPKLQSLL-IVWENRRKSWKLLG--SSFIRLELLRVLDLYK-AKFEGRNLP 599
Query: 622 ESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLK-NSNTISL--------------- 665
I KL +L L L D R+ L + +GNL L +L N T SL
Sbjct: 600 SGIGKLIHLRYLNL-DLARVSRLPSSLGNLRLLIYLDINVCTKSLFVPNCLMGMHELRYL 658
Query: 666 -------QEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHV 718
+E+ L L L+TL NF N S L +L+ ++ LR TL I +++
Sbjct: 659 RLPFNTSKEIKLGLCNLVNLETLENFSTEN---SSLEDLRGMVSLR-TLTIGLFKHISK- 713
Query: 719 GDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQ-NLEEFCINGYRGTK 777
+ A + G ++L+ L +R S + + VLD + Q NL +
Sbjct: 714 -ETLFASILGMRHLENLSIRTPDGSSKFKRIMEDGIVLDAIHLKQLNLRLYMPKLPDEQH 772
Query: 778 FPIWLGDSSLSKLVTLKFQYCGMCTS-LPSVGQLRSLK--HLEVRGMSGVKRLSLEFYGN 834
FP S L ++ C + LP + +L LK L+ R G + +S
Sbjct: 773 FP--------SHLTSISLDGCCLVEDPLPILEKLLELKEVRLDFRAFCGKRMVS------ 818
Query: 835 DSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERL 891
S FP L L+ + EWEEWI S P+L L I C KL+ LP+ L
Sbjct: 819 -SDGGFPQLHRLYIWGLAEWEEWIVEEGS-----MPRLHTLTIWNCQKLK-QLPDGL 868
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 226/850 (26%), Positives = 380/850 (44%), Gaps = 107/850 (12%)
Query: 8 ILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTDQSVKM 67
++ A E +V K+ + ++ + ++ DL + K L I L D E ++R D+ K
Sbjct: 1 MVDAITEFVVGKIGNYLIEEASMFMAVKEDLEELKTELTCIHGYLKDVEAREREDEVSKE 60
Query: 68 WLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFRKLIPT 127
W + + A+DVED+L+ + + + Q RR T RK+
Sbjct: 61 WSKLVLDFAYDVEDVLDTYHLKL--------------EERSQRRGLRRLTNKIGRKMDA- 105
Query: 128 CCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKD---LLDLKESSAGGSKKAM---QRL 181
Y ++ I+ + R +I +++ + LKE GG+ ++ Q
Sbjct: 106 -------------YSIVDDIRILKRRILDITRKRETYGIGGLKEPQGGGNTSSLRVRQLR 152
Query: 182 PTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241
S+ E V G E + K ++E LL D F +I I GMGGLGKT LA+ +YN
Sbjct: 153 RARSVDQEEVVVGLEDDAKILLEKLL--DYEEKNRF-IISIFGMGGLGKTALARKLYNSR 209
Query: 242 RVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSD--LNLLQEELNKQ----LSR 295
V++ F+ +AWT VS ++ + I+R + + ++ + +EEL L
Sbjct: 210 DVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEG 269
Query: 296 KKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV-AIMGTAPAYQLKRLS 354
KK+L+V+DD+W W + R L GS++I+TTR + V + G A++L+ L+
Sbjct: 270 KKYLVVVDDIWEREA--WDSLKRALPCNHEGSRVIITTRIKAVAEGVDGRFYAHKLRFLT 327
Query: 355 TDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWED 414
++ +F Q + + ++ L + GK++V KC GLPL L GLL + PS+W D
Sbjct: 328 FEESWELFEQRAFRNIQ-RKDEDLLKTGKEMVQKCRGLPLCIVVLAGLL-SRKTPSEWND 385
Query: 415 VLNSNIWDLPEDRCGILP-ALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAE 473
V NS L +D + P +S+ L K CF Y S+ P+DYE + E++I L +AE
Sbjct: 386 VCNSLWRRLKDDSIHVAPIVFDLSFKELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAE 445
Query: 474 GFLDHEDRDEEKEELGHQFFQELCSRSFFEKSSNDTSKFV---MHDLVNDLARWAAGEIY 530
GF+ D + E++ + +EL RS E + K + +HDL+ D+A + E+
Sbjct: 446 GFI-QGDEEMMMEDVARYYIEELIDRSLLEAVRRERGKVMSCRIHDLLRDVAIKKSKELN 504
Query: 531 FIMEGTLEV--------------------NKQQRISRNLRHLSYIRGEYDGVKRFAGFYD 570
F+ V + ++R ++ +R Y GE+D + F
Sbjct: 505 FVNVYNDHVAQHSSTTCRREVVHHQFKRYSSEKRKNKRMRSFLYF-GEFDHLVGL-DFET 562
Query: 571 IKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNL 630
+K LR + +L I L+ L+ L + + + N ++ I+KL L
Sbjct: 563 LKLLRVL------DFGSLWLPFKINGDLIHLRYLGI----DGNSINDFDIAAIISKLRFL 612
Query: 631 HTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDR 690
TL + D ++ D+ L L H+ + L G + LQTL + + D
Sbjct: 613 QTLFVSDNYFIEE-TIDLRKLTSLRHVIGNFFGGLL-----IGDVANLQTLTS--ISFDS 664
Query: 691 GSRLRELKFLMHLRGTLDISNLENVK----HVGDAKEAHLSGKKNLKVLLLRWARNSFDS 746
++L+ + L++LR L IS + K HV A L+ ++L+VL L S
Sbjct: 665 WNKLKP-ELLINLR-DLGISEMSRSKERRVHVS---WASLTKLESLRVLKLATPTEVHLS 719
Query: 747 RVPETETRVLDMLKPHQNLEEFCING--YRGTKFPIWLGDSSLSKLVTLKFQYCG-MCTS 803
E R +D++ ++LE + G + P L L+ L Y G M S
Sbjct: 720 LESEEAVRSMDVIS--RSLESVTLVGITFEEDPMPFLQKMPRLEDLILLSCNYSGKMSVS 777
Query: 804 LPSVGQLRSL 813
G+LR L
Sbjct: 778 EQGFGRLRKL 787
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C646|RX24L_ARATH Probable disease resistance protein RXW24L OS=Arabidopsis thaliana GN=RXW24L PE=2 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 201/729 (27%), Positives = 341/729 (46%), Gaps = 86/729 (11%)
Query: 13 IELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTDQSVKMWLGDL 72
+E L D+L+ + QF ++Q+ + K L +K+ L DA+ K+ + V+ + ++
Sbjct: 8 VEKLWDRLSQEYDQFKGVEDQV----TELKSNLNLLKSFLKDADAKKHISEMVRHCVEEI 63
Query: 73 HNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFRKLIPTCCTTF 132
++ +D ED++E F +L E +R + ++ T
Sbjct: 64 KDIVYDTEDIIETF---------ILKEKVEM----------KRGIMKRIKRFASTIMDRR 104
Query: 133 TLDSIKFEYVMISK-IKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQRLPTTSLVNEAK 191
L S + ISK I ++ Q Q+ + D SS ++ + T S +E
Sbjct: 105 ELAS---DIGGISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQREMRHTFSRDSEND 161
Query: 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKA 251
G E K++V L+ D + ++ + GMGGLGKTTLA+ V+N V+D FD A
Sbjct: 162 FVGMEANVKKLVGYLVEKD-----DYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFA 216
Query: 252 WTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR----KKFLLVLDDVWN 307
W VS +F I + +TIL+ +T + D N+ + +L+ L R K L+VLDD+W
Sbjct: 217 WVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWK 276
Query: 308 ENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMG--TAPAYQLKRLSTDDCLSVFTQH 365
E DW D+ +P+ G K+++T+R E +A+ G T +++ K LS D ++F
Sbjct: 277 E--EDW-DLIKPIFPPKKGWKVLLTSRT-ESIAMRGDTTYISFKPKCLSIPDSWTLFQSI 332
Query: 366 SL---DSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWD 422
++ D+ +F ++ +E +GKK++ C GL LA K LGGLL K+ DW+ L+ NI
Sbjct: 333 AMPRKDTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKR-LSENIGS 391
Query: 423 LPEDRC-----GILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLD 477
+R I L VS+ L LK CF Y + P+D+E + E++ W AEG +
Sbjct: 392 HIVERTSGNNSSIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISE 451
Query: 478 HEDRDEEK-EELGHQFFQELCSRSFFEKSSND--TSKF---VMHDLVNDLARWAAGEIYF 531
D E + G + +EL R+ S D TS+F +HD++ ++ + A E F
Sbjct: 452 RRRYDGETIRDTGDSYIEELVRRNMV-ISERDVMTSRFETCRLHDMMREICLFKAKEENF 510
Query: 532 --IMEGTLEVNKQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGY 589
I+ + Q + + R + + V+R+ ++ L + N R
Sbjct: 511 LQIVSNHSPTSNPQTLGASRRFVLHNPTTLH-VERYKNNPKLRSLVVVYDDI--GNRRWM 567
Query: 590 LACSILHQLLKLQQLRVFTVLNLSRTNIR--NLPESITKLYNLHTLLLEDCDRLKTLCAD 647
L+ SI ++++ VL+L + + LP I KL +L L L+D ++ L +
Sbjct: 568 LSGSI------FTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDA-KVSHLPSS 620
Query: 648 IGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTL 707
+ NL+ L +L + +P N +G R R EL MH + L
Sbjct: 621 LRNLVLLIYLDIRTDFTDIFVP-------------NVFMGM-RELRYLELPRFMHEKTKL 666
Query: 708 DISNLENVK 716
++SNLE ++
Sbjct: 667 ELSNLEKLE 675
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1416 | ||||||
| 284026888 | 1424 | CC-NBS-LRR protein [Quercus suber] | 0.956 | 0.951 | 0.424 | 0.0 | |
| 359495024 | 1390 | PREDICTED: putative disease resistance p | 0.925 | 0.943 | 0.418 | 0.0 | |
| 225465831 | 1483 | PREDICTED: putative disease resistance R | 0.929 | 0.887 | 0.423 | 0.0 | |
| 359487225 | 1373 | PREDICTED: putative disease resistance R | 0.937 | 0.966 | 0.415 | 0.0 | |
| 147860511 | 1406 | hypothetical protein VITISV_014536 [Viti | 0.894 | 0.900 | 0.421 | 0.0 | |
| 225449649 | 1418 | PREDICTED: putative disease resistance p | 0.939 | 0.938 | 0.419 | 0.0 | |
| 359495026 | 2204 | PREDICTED: uncharacterized protein LOC10 | 0.915 | 0.588 | 0.413 | 0.0 | |
| 147862409 | 1466 | hypothetical protein VITISV_042289 [Viti | 0.829 | 0.801 | 0.430 | 0.0 | |
| 359487172 | 1310 | PREDICTED: putative disease resistance R | 0.880 | 0.951 | 0.426 | 0.0 | |
| 147775060 | 1330 | hypothetical protein VITISV_014782 [Viti | 0.903 | 0.962 | 0.415 | 0.0 |
| >gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/1453 (42%), Positives = 853/1453 (58%), Gaps = 98/1453 (6%)
Query: 3 IIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTD 62
++ E L A + +L+D L + L ++ L KW++ L+ I+ VL DAEEKQ TD
Sbjct: 1 MLAEVFLGAVLPVLLDMLAPQELMSLVFSGSVKKKLEKWRQTLLAIQMVLKDAEEKQLTD 60
Query: 63 QSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFR 122
V WL + LA+D+EDL ++F EA +RKL Q SS S + R
Sbjct: 61 ADVNQWLEAIRELAYDLEDLFDDFAIEAMQRKL-----------KAQPESS--SPASMVR 107
Query: 123 KLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQRLP 182
L+PT FT ++KF M +I++I++R +EI QKD L LK+ GG + + P
Sbjct: 108 SLVPT---RFTPSAVKFNLKMKFEIEKISNRLKEITEQKDRLGLKD---GGMSVKIWKRP 161
Query: 183 TTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR 242
+++ V V GR+ ++K+I+EL+L+D+ +D + VI I+GM G+GKTTLA+LVYND
Sbjct: 162 SSTSVPYGPVIGRDEDRKKIIELILKDEQTDDSNYHVISIVGMAGVGKTTLARLVYNDDA 221
Query: 243 VQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVL 302
V+ HF+ +AW CVS+DFDV+ +TK +L +T Q +LN +Q +L +L KKFLLVL
Sbjct: 222 VK-HFNPRAWICVSDDFDVMMVTKALLESVTSQPCHLKELNEVQVKLASELEGKKFLLVL 280
Query: 303 DDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVF 362
DD+WNENY W + P AGA GS+IIVTTRN V +MG +Y L +S +DC ++F
Sbjct: 281 DDLWNENYGLWEALLPPFRAGAAGSRIIVTTRNASVGKVMGAVQSYNLDFISNNDCWAIF 340
Query: 363 TQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWD 422
QHSL + +F + I ++I+ +C GLPLAA+TLGGL RGK +WED++NS +W
Sbjct: 341 VQHSLMNENFGRPGNSGLIRERILERCRGLPLAARTLGGLFRGKE-LDEWEDIMNSKLWS 399
Query: 423 LPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRD 482
I P LR+SY++L LK+CFAYCSL P+DYEFEE+++ILLW+AEG + + D
Sbjct: 400 SSNMGSDIFPILRLSYHHLPHHLKRCFAYCSLFPRDYEFEEKQLILLWMAEGLIYQAEGD 459
Query: 483 EEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNKQ 542
+ E+LG ++F++L SRSFF++SS++ S+FVMHDL+ DLA+W AG YF +E L+ N+Q
Sbjct: 460 KPMEDLGGEYFRDLLSRSFFQQSSSNKSRFVMHDLITDLAQWVAGISYFRLETKLKGNEQ 519
Query: 543 QRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLL-KL 601
++S RHLS++ YDG K+F + K+LRTFL +M YL+ I++QLL KL
Sbjct: 520 SKVSSKARHLSFVGSRYDGAKKFEAISEFKHLRTFLPLMAPYVGYSYLSYHIINQLLPKL 579
Query: 602 QQLRVFTV--------------------LNLSRTNIRNLPESITKLYNLHTLLLEDCDRL 641
Q LRV ++ L+LS T +R+LP SI+ LYNL TLLLE+C L
Sbjct: 580 QNLRVLSLSGYRIVYLPQTIGDLKHLRYLDLSCTQLRSLPTSISTLYNLQTLLLENCTSL 639
Query: 642 KTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGN-DRGSRLRELKFL 700
K L D G L L HL + L+ MPL G L+ LQTL NFVVG D +REL L
Sbjct: 640 KFLPPDFGKLFNLRHLNIFGSNLLEGMPLSIGNLSSLQTLSNFVVGKADSFCVIRELGPL 699
Query: 701 MHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLK 760
+HLRGTL IS LENV +A++++L GK++L +++ W+ N +S+ ET+ VL+ML+
Sbjct: 700 VHLRGTLCISKLENVTKAQEARDSYLYGKQDLNEVVMEWSSNLNESQDEETQLEVLNMLQ 759
Query: 761 PHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRG 820
P+ L+E + Y GTKFP W+GD S S LV L+F+ C C SLP VGQL LK L ++G
Sbjct: 760 PNVKLKELTVKCYGGTKFPTWIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLLIKG 819
Query: 821 MSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRC 880
M+GVK + EFYG PF LETLHFEDM W WIP G + E F L +L I RC
Sbjct: 820 MAGVKSVGREFYGESCSRPFQSLETLHFEDMPRWVNWIPLGVN---EAFACLHKLSIIRC 876
Query: 881 SKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILH 940
L LP+ LP+L+ VI C +VVSV +LP LC I+GCK+V S+
Sbjct: 877 HNLVRKLPDHLPSLKKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRVECESSVGF------ 930
Query: 941 IGGCPNLQSL--VAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTL----PQSLLNLSSLRE 994
G P + ++E L K+EYL + + L TL P+ L L LRE
Sbjct: 931 --GSPYSMAFSKISEFGNATAGLMHGVSKVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRE 988
Query: 995 IYIRSCSSLVSFPEVALPSKLRLITIWDCEALKS-LPEAWM-CETNSSLEILNIAGCSSL 1052
+ I C +LVSFP PS L++I I C LKS LPE + N+ LE L + C S+
Sbjct: 989 LSIEDCPTLVSFPASGFPSMLKVIQIKSCSGLKSLLPEGTLHSRENACLERLCVVRCDSM 1048
Query: 1053 TYITGVQLPPSLKLLLIFDC-------DSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRC 1105
I QLP +LK L I C D + G+ + + + L++L I C
Sbjct: 1049 KSIARGQLPTTLKKLEISHCMNLQCVLDEGEGSSSSSGMHDEDINNRSKTHLQYLDIKSC 1108
Query: 1106 PSLTCLFSKNGLPATLESL------------EVGNLPQSLKFLDVWECPKLESIAERLNN 1153
PSLT L S LPATL L G LP +L++L++ KL+ IAERL+
Sbjct: 1109 PSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQYLEIQSISKLQKIAERLHQ 1168
Query: 1154 NTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISEC 1213
NTSLE I I NC LK LP LHNL +L++ I+ C + SF GLP + L L I C
Sbjct: 1169 NTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSFPAAGLP-SNLRVLGIKNC 1227
Query: 1214 ERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQ 1273
+ L+ALP G+RNLT LQ L I L + P ++ LPTNL LN+ ++K +K EW
Sbjct: 1228 KNLKALPNGMRNLTSLQKLDISHRL--DSLPSPQEGLPTNLIELNMHDLKFYKPMFEW-- 1283
Query: 1274 GGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERL 1333
GL + +SL +L I G DV S+P E + G+ + LP +L+ L I+ NLE L
Sbjct: 1284 ---GLQQPTSLIKLSIHGECLDVDSYPGERENGV----MMLLPNSLSILCISYFQNLECL 1336
Query: 1334 SSSIFYHQNLT---KLKLCNCPKLKYFPEKGLPASLLRLEISGCPLIEERYIKDGGQYRH 1390
S F QNLT +LK+ NC KL P++GLP SL +LEI CPL+ + + GQ
Sbjct: 1337 SPKGF--QNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHCNNEKGQEWS 1394
Query: 1391 LLTYIPCIIINGR 1403
+ +IPC++I+ +
Sbjct: 1395 KIAHIPCVLIDNK 1407
|
Source: Quercus suber Species: Quercus suber Genus: Quercus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495024|ref|XP_002267933.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/1453 (41%), Positives = 848/1453 (58%), Gaps = 142/1453 (9%)
Query: 1 MSIIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQR 60
M+ +GEA L A I+ LVD L L+ FA +EQ+ A+L KW+ +L+KI AVL DAEEKQ
Sbjct: 1 MAFVGEAFLSASIQKLVDMLACPDLRKFAREEQVHAELKKWEGILLKIHAVLHDAEEKQM 60
Query: 61 TDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTK 120
T++ V++WL +L +LA+DVED+L++F TEA RR L+ +P + +T+
Sbjct: 61 TNRFVQIWLAELRDLAYDVEDILDDFATEALRRNLIKDDP--------------QPSTST 106
Query: 121 FRKLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQR 180
R LI + + F +++ + M SKI+EI R EI TQK LDL+E+ G S + +R
Sbjct: 107 VRSLISSLSSRFNPNALVYNLNMGSKIEEITARLHEISTQKGDLDLRENVEGRSHRKRKR 166
Query: 181 LP-TTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 239
+P T SLV E++VYGRET+K+ I+E+LLRD+L +D VIPI+GMGG+GKTTLAQL YN
Sbjct: 167 VPETASLVVESRVYGRETDKEAILEVLLRDELIHDNEVCVIPIVGMGGVGKTTLAQLAYN 226
Query: 240 DHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFL 299
D RV++HFDL+AW CVS+DFDV+R+TKT+L+ I T + +DLNLLQ ++ ++LS KKFL
Sbjct: 227 DDRVKNHFDLRAWVCVSDDFDVLRITKTLLQSIASYTREINDLNLLQVKMKEKLSGKKFL 286
Query: 300 LVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCL 359
LVLDDVWNENY+ W + PL AG PGSK+I+TTRN V + T Y L+ LS DDC
Sbjct: 287 LVLDDVWNENYDKWDSLCTPLRAGGPGSKVIITTRNMGVATLTRTVSPYLLQELSNDDCR 346
Query: 360 SVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSN 419
+VF QH+L +R+F ++ L+ IG+++V +C GLPL AK LGG+LR + W+D+L S
Sbjct: 347 AVFAQHALGARNFEAHPHLKIIGEEMVNRCRGLPLVAKALGGILRNELNHEAWDDILKSK 406
Query: 420 IWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHE 479
IWDLPE++ G+LPAL++SY++L LKQCFAYC++ PK YEF+++E+ILLW+ EGFL
Sbjct: 407 IWDLPEEKSGVLPALKLSYHHLPSHLKQCFAYCAIFPKGYEFKKDELILLWMGEGFLQQT 466
Query: 480 DRDEEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEV 539
+ E+LG ++F EL SRSFF++SSN +F+MHDL++DLA+ AG + +E LE
Sbjct: 467 KGKKRMEDLGSKYFSELLSRSFFQQSSNIMPRFMMHDLIHDLAQSIAGNVCLNLEDKLEN 526
Query: 540 NKQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNN---SRGYLACSILH 596
N + I + RHLS+IR + K+F KYLRTFL++ +S + S ++ + H
Sbjct: 527 N--ENIFQKARHLSFIRQANEIFKKFEVVDKGKYLRTFLALPISVSFMKSLSFITTKVTH 584
Query: 597 QLL-KLQQLRVFTV--------------------LNLSRTNIRNLPESITKLYNLHTLLL 635
LL +++ LRV ++ LNL R++I+ LP S+ LYNL TL+L
Sbjct: 585 DLLMEMKCLRVLSLSGYKMSDLPSSIDNLSHLRYLNLCRSSIKRLPNSVGHLYNLQTLIL 644
Query: 636 EDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLR 695
DC L + +GNLI L HL + T L+EMP R G LT LQTL F+VG GS ++
Sbjct: 645 RDCWSLTEMPVGMGNLINLRHLDIAGTSQLEEMPPRMGSLTNLQTLSKFIVGKGNGSSIQ 704
Query: 696 ELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRV 755
ELK L+ L+G L I L NV++ DA +A L K +++ L + W+ + DSR E V
Sbjct: 705 ELKHLLDLQGELSIQGLHNVRNTRDAMDACLKNKCHIEELTMGWSGDFDDSRNELNEMLV 764
Query: 756 LDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKH 815
L++L+P +NL++ + Y G KFP W+G+ S SK+ +L + CG CTSLP +G+L LK
Sbjct: 765 LELLQPQRNLKKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKA 824
Query: 816 LEVRGMSGVKRLSLEFYGNDSPI-PFPCLETLHFEDMKEWEEWIPRGSSQEIEG-FPKLR 873
L ++GM VK + EF+G S PFPCLE+L FEDM EWE+W +E EG F LR
Sbjct: 825 LRIQGMCKVKTIGDEFFGEVSLFQPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLR 884
Query: 874 ELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRS--- 930
EL I C KL G+LP LP+L I C +L ++ L +C + C +VV R+
Sbjct: 885 ELRIRECPKLTGSLPNCLPSLAELEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVD 944
Query: 931 ----TTKHLGLI-------------------LHIGGCPNLQS------------------ 949
TT ++ I L I GC + S
Sbjct: 945 LSSLTTLNIQRISRLTCLREGFTQLLAALQKLVIRGCGEMTSLWENRFGLECLRGLESID 1004
Query: 950 ------LVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSL 1003
LV+ EEQ L C L++L + C L LP L L+ L E+ ++SC L
Sbjct: 1005 IWQCHGLVSLEEQR------LPCNLKHLKIENCANLQRLPNGLQRLTCLEELSLQSCPKL 1058
Query: 1004 VSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPS 1063
SFPE+ LP LR + + C LK LP + + LE L I C L +LP S
Sbjct: 1059 ESFPEMGLPPMLRSLVLQKCNTLKLLPHNY---NSGFLEYLEIEHCPCLISFPEGELPAS 1115
Query: 1064 LKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLES 1123
LK L I DC +++TL E +S S LE L I +C SL S
Sbjct: 1116 LKQLKIKDCANLQTLP-EGMTHHNSMVSNNSCCLEVLEIRKCSSLP-------------S 1161
Query: 1124 LEVGNLPQSLKFLDVWECPKLESIAER-LNNNTSLEVIDIGNCENLKILPSGLHNLCQLQ 1182
L G LP +LK L++W+C + + I+E+ L++NT+LE + I N N+KILP LH+L L
Sbjct: 1162 LPTGELPSTLKRLEIWDCRQFQPISEKMLHSNTALEHLSISNYPNMKILPGFLHSLTYLY 1221
Query: 1183 RISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPER 1242
I+ C LVSF E GLP L L I+ CE L++LP ++NL LQ L I + E
Sbjct: 1222 ---IYGCQGLVSFPERGLPTPNLRDLYINNCENLKSLPHQMQNLLSLQELNIRNCQGLES 1278
Query: 1243 DPEDEDRLPTNLHSLNIDNMKSWK-SFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPP 1301
PE L NL SL+I + + K EW GL+R +SL L I G + S
Sbjct: 1279 FPECG--LAPNLTSLSIRDCVNLKVPLSEW-----GLHRLTSLSSLYISGVCPSLASLSD 1331
Query: 1302 EEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPEKG 1361
+E + LP TL+ L I+ L +L L+ +L ++ + CPKL+ G
Sbjct: 1332 DECL---------LPTTLSKLFISKLDSLVCLALKNL--SSLERISIYRCPKLRSI---G 1377
Query: 1362 LPASLLRLEISGC 1374
LP +L RLEI C
Sbjct: 1378 LPETLSRLEIRDC 1390
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465831|ref|XP_002264750.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/1413 (42%), Positives = 842/1413 (59%), Gaps = 97/1413 (6%)
Query: 3 IIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTD 62
+GEA+L IE L D +TS L FA +E + ++L KWK +L+KI AVL DAEEKQ T+
Sbjct: 4 FVGEAVLSVFIEKLADMVTSPELWNFASEELVHSELNKWKTILMKIYAVLHDAEEKQMTN 63
Query: 63 QSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFR 122
VKMWL +L +LA+DVED+L+ F TE+ RR L+ A H S + RST+ K
Sbjct: 64 PRVKMWLDELGDLAYDVEDILDGFATESLRRNLM-----AETH----PSGTERSTS-KLW 113
Query: 123 KLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGG-SKKAMQRL 181
LIP+CCT+FT ++IKF M+SKIK I QEI QK L L E+ +G S K + L
Sbjct: 114 SLIPSCCTSFTPNAIKFNAEMLSKIKMITTSLQEISAQKSDLHLTENISGERSTKTREIL 173
Query: 182 PTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241
PTTSLV+E++VYGRET+K+ I LLLRDD D VIP++GM G+GKTTL QL +ND
Sbjct: 174 PTTSLVDESRVYGRETDKEAIANLLLRDDPSTDE-ICVIPVVGMAGIGKTTLTQLAFNDD 232
Query: 242 RVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLV 301
V+DHFDL+ W VS+DFDV+++TKTIL+ ++ T + DLNLLQ EL ++LS +KFLL+
Sbjct: 233 EVKDHFDLRVWVYVSDDFDVLKITKTILQSVSLATQNVDDLNLLQMELREKLSGQKFLLI 292
Query: 302 LDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSV 361
LDDVWNE+Y+ W + P+ +GAPGSK+IVTTRN+ VV+I GT PAY L+ LS +DCL V
Sbjct: 293 LDDVWNESYDSWDLLCMPMRSGAPGSKLIVTTRNEGVVSITGTRPAYCLQELSYEDCLFV 352
Query: 362 FTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIW 421
FTQ +L +F ++ L+E+G++IV +C GLPLAAK LGG+LR + WE++L S IW
Sbjct: 353 FTQQALRRSNFDAHSHLKEVGEEIVRRCKGLPLAAKALGGMLRNQVSHDAWENILTSKIW 412
Query: 422 DLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDR 481
DLP+D+ +LPAL++SY +L L++CFAYCS+ PK YEF+++E++ LW+AEGF ++
Sbjct: 413 DLPQDKSRVLPALKLSYNHLPSHLRKCFAYCSIFPKGYEFDKDELVQLWMAEGFF---EQ 469
Query: 482 DEEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNK 541
+E E+LG ++F +L SRSFF++S++D+S+FVMHDL+NDLA++ AGEI F +EG NK
Sbjct: 470 TKEAEDLGSKYFYDLLSRSFFQQSNHDSSRFVMHDLINDLAQYVAGEISFNLEGMSVNNK 529
Query: 542 QQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSR-GYLACSILHQLLK 600
Q I + +RH S+ R EY+ +RF F+ +K LRT +++ L+ SR ++ +L L+K
Sbjct: 530 QHSIFKKVRHSSFNRQEYEKFERFKTFHKMKCLRTLVALPLNAFSRYHFIPSKVLDDLIK 589
Query: 601 ----------------------LQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDC 638
+ LR LNLS ++I+ LP+S+ LYNL TL+L DC
Sbjct: 590 QFKCLRVLSLSGYYISGELPHSIGDLRHLRYLNLSNSSIKMLPDSVGHLYNLETLILSDC 649
Query: 639 DRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELK 698
RL L IG+LI L H+ S T LQEMP LT LQTL ++VG + R+RELK
Sbjct: 650 WRLTKLPIVIGDLINLRHIDISGTSQLQEMPSEISNLTNLQTLSKYIVGENNSLRIRELK 709
Query: 699 FLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDM 758
L LRG L IS L NV DA +A L K N++ L + W + SR E VL+
Sbjct: 710 NLQDLRGKLSISGLHNVVDSQDAVDAKLEEKHNIEELTMEWGSDFVKSRNEMNEMNVLEG 769
Query: 759 LKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEV 818
L+P +NL++ + Y G+ F W+ D S + L + C CTSLPS+G+L LK L +
Sbjct: 770 LRPPRNLKKLTVASYGGSTFSGWIRDPSFPSMTQLILKNCKRCTSLPSLGKLSFLKTLHI 829
Query: 819 RGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHIS 878
GMS ++ + +EFYG P P LE L FEDM +WE+W + + +E FP+LREL I
Sbjct: 830 EGMSEIRTIDVEFYGGVVQ-PLPSLELLKFEDMLKWEDWFFPDAVEGVELFPRLRELTIR 888
Query: 879 RCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLI 938
CSKL LP+RLP+L I +C+ L V + +L + +ID CK++V RS G++
Sbjct: 889 NCSKLVKQLPDRLPSLVKLDISNCQNLAVPFLRFASLGELEIDECKEMVLRS-----GVV 943
Query: 939 LHIGG-------CPNLQSLVAEEEQEQQQLCD--LSCKLEYLGLSYCQGLVTLPQSLLNL 989
G LQS V E L D L C L+ L + C L +L L +L
Sbjct: 944 ADSGDQMTSRWVYSGLQSAVFERCDWLVSLDDQRLPCNLKMLKIVDCVNLKSLQNGLQSL 1003
Query: 990 SSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGC 1049
+ L E+ I C +L SF E+ LP +LR + + C +L+ LP + ++ LE L I C
Sbjct: 1004 TCLEELEIVGCRALDSFREIDLPPRLRRLVLQRCSSLRWLPHNY---SSCPLESLEIRFC 1060
Query: 1050 SSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLT 1109
SL +LP +LK L + DC +R+L + + +S+ + L+ L I C SL
Sbjct: 1061 PSLAGFPSGELPTTLKQLTVADCMRLRSLP-DGMMHPNSTHSNNACCLQILRIHDCQSLV 1119
Query: 1110 CLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNT-SLEVIDIGNCENL 1168
S G L +LK L++ C LES++++++ ++ +LE +++ + NL
Sbjct: 1120 -------------SFPRGELSSTLKRLEIQHCSNLESVSKKMSPSSRALEYLEMRSYPNL 1166
Query: 1169 KILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTC 1228
KILP LHN+ QL +I CG L F E GL L L I C+ L+ LP ++NLT
Sbjct: 1167 KILPQCLHNVKQL---NIEDCGGLEGFPERGLSAPNLRELRIWRCQNLKCLPHQMKNLTS 1223
Query: 1229 LQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFI-EWGQGGGGLNRFSSLQQL 1287
LQ L IG SP D E LP L L++ N K+ K+ I EW GL+ +SL L
Sbjct: 1224 LQFLNIGH--SPRVDSFPEGGLPPTLKFLSVVNYKNLKTPISEW-----GLHTLTSLSTL 1276
Query: 1288 RIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLS-SSIFYHQNLTKL 1346
+I G D S +E + P +LT L I+ + +L L +SI +L L
Sbjct: 1277 KIWGMFADKASLWDDEFL---------FPTSLTNLHISHMESLASLDLNSII---SLQHL 1324
Query: 1347 KLCNCPKLKYFPEKGLPASLLRLEISGCPLIEE 1379
+ +CPKL + +L LEI CPL+++
Sbjct: 1325 YIGSCPKLHSLTLRD--TTLASLEIIDCPLLQK 1355
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487225|ref|XP_002268551.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/1441 (41%), Positives = 841/1441 (58%), Gaps = 114/1441 (7%)
Query: 3 IIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTD 62
I+GEA+L I+ LVD +TS L +A +EQ+ ++L + K +L KI VL+DAEEKQ T+
Sbjct: 4 IVGEAVLSCFIQKLVDMVTSPELWKYARKEQVDSELKRCKNILTKICLVLNDAEEKQMTN 63
Query: 63 QSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFR 122
VK+WL +L +LA+DVED+L++F EA R L++ +P Q S R +
Sbjct: 64 PLVKIWLDELRDLAYDVEDILDDFAIEALRSSLIMAQP-------QQGISKLRDMLSS-- 114
Query: 123 KLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGG-SKKAMQRL 181
LIP+ T+ + M SKIKEI +R QEI QK+ LDL+E + G S + +R
Sbjct: 115 -LIPSASTSNS--------SMRSKIKEITERLQEISAQKNDLDLREIAGGWWSDRKRKRE 165
Query: 182 PTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241
TTSLV E+ VYGRE K +IV++LL+ D +D SVIPI+GMGG+GKTTLAQL +ND
Sbjct: 166 QTTSLVVESDVYGREKNKADIVDMLLKHDPSSDDEVSVIPIVGMGGIGKTTLAQLAFNDD 225
Query: 242 RVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLV 301
V+ FDL+AW CVS+DFDV ++TKTIL+ + T D +DLNLLQ +L ++ S KKFLLV
Sbjct: 226 EVKGRFDLRAWVCVSDDFDVSKITKTILQSVDPGTHDVNDLNLLQVKLKEKFSGKKFLLV 285
Query: 302 LDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSV 361
LDDVWNEN ++W + P+ AGAPGSK+IVTTRN+ V A+ T PAY L+ LS +DCLS+
Sbjct: 286 LDDVWNENCHEWDTLCMPMRAGAPGSKLIVTTRNEGVAAVTRTCPAYPLRELSNNDCLSL 345
Query: 362 FTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIW 421
FTQ +L +R+F ++ L+E+G++IV +C GLPLAAK LGG+LR + W ++L S IW
Sbjct: 346 FTQQALRTRNFDAHPHLKEVGEEIVRRCKGLPLAAKALGGMLRNQLSRDAWANILTSRIW 405
Query: 422 DLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDR 481
DLPED+ ILPAL +SY++L LKQCFAYCS+ PKDYEF +++++LLW+AEGFL
Sbjct: 406 DLPEDKSHILPALMLSYHHLPSHLKQCFAYCSMFPKDYEFNKDDLVLLWMAEGFLQKTKE 465
Query: 482 DEEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNK 541
E+LG ++F +L SRSFF+ SS ++S++VMHDL+NDLA+ AGEIYF ++G E NK
Sbjct: 466 AARPEDLGSKYFNDLFSRSFFQHSSRNSSRYVMHDLINDLAQSVAGEIYFHLDGAWENNK 525
Query: 542 QQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNN--SRGYLACSILHQLL 599
Q IS RH S+ R + ++F F+ +K LRT +++ + S GY++ +L LL
Sbjct: 526 QSTISEKTRHSSFNRQHSETQRKFEPFHKVKCLRTLVALPMDQPVFSSGYISSKVLDDLL 585
Query: 600 K-LQQLRVFTV--------------------LNLSRTNIRNLPESITKLYNLHTLLLEDC 638
K ++ LRV ++ LNLS ++IR LP+S+ LYNL L+L DC
Sbjct: 586 KEVKYLRVLSLSGYKIYGLPDSIGNLKYLRYLNLSGSSIRRLPDSVCHLYNLQALILSDC 645
Query: 639 DRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELK 698
L TL IGNLI L HL +T LQEMP + G LT LQTL F+VG LRELK
Sbjct: 646 KDLTTLPVGIGNLINLRHLHIFDTWKLQEMPSQTGNLTKLQTLSKFIVGEGNNLGLRELK 705
Query: 699 FLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDM 758
L LRG L I L NV ++ D ++A+L K ++ L + W+ + SR E VL+
Sbjct: 706 NLFDLRGQLSILGLHNVMNIRDGRDANLESKHGIEELTMEWSDDFGASRNEMHERNVLEQ 765
Query: 759 LKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEV 818
L+PH+NL++ I Y G+ FP W+ D S + L + C CTSLP++GQ+ SLK L +
Sbjct: 766 LRPHRNLKKLTIASYGGSGFPNWMKDPSFPIMTHLILKDCKRCTSLPALGQISSLKVLHI 825
Query: 819 RGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHIS 878
+GMS V+ ++ EFYG PFP LE+L FE M EWE W + E E FP LR L I
Sbjct: 826 KGMSEVRTINEEFYGGIVK-PFPSLESLTFEVMAEWEYWFCPDAVNEGELFPCLRLLTIR 884
Query: 879 RCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLI 938
C KL+ LP LP+ I C L + +L + ++ K++ +L +
Sbjct: 885 DCRKLQ-QLPNCLPSQVKLDISCCPNLGFASSRFASLGEQRLPCNLKMLRIHDDANLEKL 943
Query: 939 ------------LHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSL 986
L I GCP+L+ C+L L+ L + C+ L LP+ +
Sbjct: 944 PNGLQTLTCLEQLDITGCPSLRCFPN---------CELPTTLKSLCIKDCKNLEALPEGM 994
Query: 987 LNLSS---LREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEI 1043
++ S L E+ I C L SFP+ LP LR + + +C+ LKSLP + ++ +LE
Sbjct: 995 MHHDSTCCLEELKIEGCPRLESFPDTGLPPLLRRLEVSECKGLKSLPHNY---SSCALES 1051
Query: 1044 LNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIG 1103
L I+ C SL +LP +LK + I DC+++ +L EG+ S + LE ++I
Sbjct: 1052 LEISDCPSLRCFPNGELPTTLKSIWIQDCENLESLP--EGMMHHDS----TCCLEEVIIM 1105
Query: 1104 RCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERL-NNNTSLEVIDI 1162
CP L P T G LP +LK L++ CP LES++E + NN++L+ + +
Sbjct: 1106 GCPRL------ESFPDT------GELPSTLKKLEICGCPDLESMSENMCPNNSALDNLVL 1153
Query: 1163 GNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRG 1222
NLKILP LH+L LQ I+ C L F GL LT L I CE L++LP
Sbjct: 1154 EGYPNLKILPECLHSLKSLQIIN---CEGLECFPARGLSTPTLTSLRIEGCENLKSLPHQ 1210
Query: 1223 LRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFS 1282
+R+L L+ LTI + P + ED +P NL SL I ++ K I + +
Sbjct: 1211 MRDLKSLRDLTI--LFCPGVESFPEDGMPPNLISLEISYCENLKKPI------SAFHTLT 1262
Query: 1283 SLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQN 1342
SL L I D+VSF EE + LP +LT L I + +L LS +
Sbjct: 1263 SLFSLTIENVFPDMVSFRDEECL---------LPISLTSLRITAMESLAYLSLQNLI--S 1311
Query: 1343 LTKLKLCNCPKLKYFPEKGLPASLLRLEISGCPLIEERYIKDGGQYRHLLTYIPCIIING 1402
L L++ CP L +PA+L +LEI CP++EERY K+ G+Y + +IPCI + G
Sbjct: 1312 LQYLEVATCPNLGSL--GSMPATLEKLEIWCCPILEERYSKEKGEYWPKIAHIPCIAMRG 1369
Query: 1403 R 1403
+
Sbjct: 1370 Q 1370
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147860511|emb|CAN79726.1| hypothetical protein VITISV_014536 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/1403 (42%), Positives = 822/1403 (58%), Gaps = 137/1403 (9%)
Query: 1 MSIIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQR 60
M+ +GEA L A I+ LVD L L+ FA +EQ+ A+L KW+ +L+KI AVL DAEEKQ
Sbjct: 1 MAFVGEAFLSASIQKLVDMLACPDLRKFAREEQVHAELKKWEGILLKIHAVLHDAEEKQM 60
Query: 61 TDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTK 120
T++ V++WL +L +LA+DVED+L++F TEA RR L+ +P + +T+
Sbjct: 61 TNRFVQIWLAELRDLAYDVEDILDDFATEALRRNLIKDDP--------------QPSTST 106
Query: 121 FRKLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQR 180
R LI + + F +++ + M SKI+EI R EI TQK LDL+E+ G S + +R
Sbjct: 107 VRSLISSLSSRFNPNALVYNLNMGSKIEEITARLHEISTQKGDLDLRENVEGRSHRKRKR 166
Query: 181 LP-TTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 239
+P T SLV E++VYGRET+K+ I+E+LLRD+L +D VIPI+GMGG+GKTTLAQL YN
Sbjct: 167 VPETASLVVESRVYGRETDKEAILEVLLRDELIHDNEVCVIPIVGMGGVGKTTLAQLAYN 226
Query: 240 DHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFL 299
D RV++HFDL+AW CVS+DFDV+R+TKT+L+ I T + +DLNLLQ ++ ++LS KKFL
Sbjct: 227 DDRVKNHFDLRAWVCVSDDFDVLRITKTLLQSIASYTREINDLNLLQVKMKEKLSGKKFL 286
Query: 300 LVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCL 359
LVLDDVWNENY+ W + PL AG PGSK+I+TTRN V + T Y L+ LS DDC
Sbjct: 287 LVLDDVWNENYDKWDSLCTPLRAGGPGSKVIITTRNMGVATLTRTVSPYLLQELSNDDCR 346
Query: 360 SVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSN 419
+VF QH+L +R+F ++ L+ IG+++V +C GLPL AK LGG+LR + W+D+L S
Sbjct: 347 AVFAQHALGARNFEAHPHLKIIGEEMVNRCRGLPLVAKALGGILRNELNHEAWDDILKSK 406
Query: 420 IWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHE 479
IWDLPE++ G+LPAL++SY++L LKQCFAYC++ PK YEF+++E+ILLW+ EGFL
Sbjct: 407 IWDLPEEKSGVLPALKLSYHHLPSHLKQCFAYCAIFPKGYEFKKDELILLWMGEGFLQQT 466
Query: 480 DRDEEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEV 539
+ E+LG ++F EL SRSFF++SSN +F+MHDL++DLA+ AG + +E LE
Sbjct: 467 KGKKRMEDLGSKYFSELLSRSFFQQSSNIMPRFMMHDLIHDLAQSIAGNVCLNLEDKLEN 526
Query: 540 NKQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNN---SRGYLACSILH 596
N + I + RHLS+IR + K+F KYLRTFL++ +S + S ++ + H
Sbjct: 527 N--ENIFQKARHLSFIRQANEIFKKFEVVDKGKYLRTFLALPISVSFMKSLSFITTKVTH 584
Query: 597 QLL-KLQQLRVFTV--------------------LNLSRTNIRNLPESITKLYNLHTLLL 635
LL +++ LRV ++ LNL R++I+ LP S+ LYNL TL+L
Sbjct: 585 DLLMEMKCLRVLSLSGYKMSDLPSSIDNLSHLRYLNLCRSSIKRLPNSVGHLYNLQTLIL 644
Query: 636 EDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLR 695
DC L + +GNLI L HL + T L+EMP R G LT LQTL F VG GS ++
Sbjct: 645 RDCWSLTEMPVGMGNLINLRHLDIAGTSQLEEMPPRMGSLTNLQTLSKFXVGKGNGSSIQ 704
Query: 696 ELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRV 755
ELK L+ L+G L I L NV++ DA +A L K +++ L + W+ + DSR E V
Sbjct: 705 ELKHLLDLQGELSIQGLHNVRNTRDAMDACLKNKCHIEELTMGWSGDFDDSRNELNEMLV 764
Query: 756 LDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKH 815
L++L+P +NL++ + Y G KFP W+G+ S SK+ +L + CG CTSLP +G+L LK
Sbjct: 765 LELLQPQRNLKKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKA 824
Query: 816 LEVRGMSGVKRLSLEFYGNDSPI-PFPCLETLHFEDMKEWEEWIPRGSSQEIEG-FPKLR 873
L ++GM VK + EF+G S PFPCLE+L FEDM EWE+W +E EG F LR
Sbjct: 825 LRIQGMCKVKTIGDEFFGEVSLFQPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLR 884
Query: 874 ELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRS--- 930
EL I C KL G+LP LP+L I C +L ++ L +C + C +VV R+
Sbjct: 885 ELRIRECPKLTGSLPNCLPSLAELEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVD 944
Query: 931 ----TTKHLGLI-------------------LHIGGCPNLQS------------------ 949
TT ++ I L I GC + S
Sbjct: 945 LSSLTTLNIQRISRLTCLREGFTQLLAALQKLVIRGCGEMTSLWENRFGLECLRGLESID 1004
Query: 950 ------LVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSL 1003
LV+ EEQ L C L++L + C L LP L L+ L E+ ++SC L
Sbjct: 1005 IWQCHGLVSLEEQR------LPCNLKHLKIENCANLQRLPNGLQRLTCLEELSLQSCPKL 1058
Query: 1004 VSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPS 1063
SFPE+ LP LR + + C LK LP + + LE L I C L +LP S
Sbjct: 1059 ESFPEMGLPPMLRSLVLQKCNTLKLLPHNY---NSGFLEYLEIEHCPCLISFPEGELPAS 1115
Query: 1064 LKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLES 1123
LK L I DC +++TL E + +S S LE L I +C SL S
Sbjct: 1116 LKQLKIKDCANLQTLP-EGMMHHNSMVSNNSCCLEVLEIRKCSSLP-------------S 1161
Query: 1124 LEVGNLPQSLKFLDVWECPKLESIAER-LNNNTSLEVIDIGNCENLKILPSGLHNLCQLQ 1182
L G LP +LK L++W+C + + I+E+ L++NT+LE + I N N+KILP LH+L L
Sbjct: 1162 LPTGELPSTLKRLEIWDCRQFQPISEKMLHSNTALEHLSISNYPNMKILPGXLHSLTYLY 1221
Query: 1183 RISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPER 1242
I+ C LVSF E GLP L L I+ CE L++LP ++NL LQ L I + E
Sbjct: 1222 ---IYGCQGLVSFPERGLPTPNLRDLYINNCENLKSLPHQMQNLLSLQELNIRNCQGLES 1278
Query: 1243 DPEDEDRLPTNLHSLNIDNMKSWK-SFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPP 1301
PE L NL SL+I + + K EW GL+R +SL L I G + S
Sbjct: 1279 FPECG--LAPNLTSLSIRDCVNLKVPLSEW-----GLHRLTSLSSLYISGVCPSLASLSD 1331
Query: 1302 EEDIGLGLGTTLPLPATLTYLVI 1324
+E + LP TL+ L I
Sbjct: 1332 DECL---------LPTTLSKLFI 1345
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/1482 (41%), Positives = 852/1482 (57%), Gaps = 151/1482 (10%)
Query: 1 MSIIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQR 60
M +G A+L A +L DKLTS L F A +EQI ++L KW++ L+KI AVLDDAEEKQ
Sbjct: 1 MDAVGGAVLSALFGVLFDKLTSADLTF-ARREQIHSELKKWEKTLMKINAVLDDAEEKQM 59
Query: 61 TDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTK 120
+++ VK+WL +L +LA+D +D+L+EF T+A R L+ E + + +K
Sbjct: 60 SNRFVKIWLSELRDLAYDADDILDEFATQAALRPNLISE--------------SQGSPSK 105
Query: 121 FRKLIPTCCTTF-TLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQ 179
LIPTCCTT + F M SKIK+I R +I T++ ++L GG Q
Sbjct: 106 VWSLIPTCCTTLISPTDFMFNVEMGSKIKDITARLMDISTRR--IELGLEKVGGPVSTWQ 163
Query: 180 RLPTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 239
R PTT LVNE VYGR+ ++K IV+LLLRD ++ V+PI+GMGG+GKTTLA+LV+N
Sbjct: 164 RPPTTCLVNEPCVYGRDKDEKMIVDLLLRDG-GSESKVGVVPIVGMGGVGKTTLARLVFN 222
Query: 240 DHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFL 299
D ++ +F L++W CVS++FD+IR+TK IL IT QT SDLN LQ +L+ L+ K+FL
Sbjct: 223 DETIKQYFTLRSWVCVSDEFDIIRITKAILDSITSQTTALSDLNQLQVKLSDALAGKRFL 282
Query: 300 LVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQ-LKRLSTDDC 358
LVLDDVWN+NY DWV + P GA GSKIIVTTR+ EV +M + Y +K LS DDC
Sbjct: 283 LVLDDVWNKNYGDWVLLRSPFSTGAAGSKIIVTTRDAEVARMMAGSDNYHYVKALSYDDC 342
Query: 359 LSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNS 418
SVF QH+ ++R+ ++ SLE IGKKIV KC GLPLAAKTLGGLLR K +WEDVL S
Sbjct: 343 WSVFVQHAFENRNICAHPSLEVIGKKIVQKCGGLPLAAKTLGGLLRSKSKDDEWEDVLYS 402
Query: 419 NIWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDH 478
IW+ P+ ILPALR+SY+YL LK+CFAYCS+ PKDYEF+++E++LLW+AEG +
Sbjct: 403 KIWNFPDKESDILPALRLSYHYLPSHLKRCFAYCSIFPKDYEFDKKELVLLWMAEGLIQQ 462
Query: 479 EDRDEEK-EELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTL 537
+ +++ E++G +F EL SRSFF+ SS + S+FVMHDL+NDLA++ + EI F +E +L
Sbjct: 463 SPKGKKQMEDMGSDYFCELLSRSFFQLSSCNGSRFVMHDLINDLAQYVSEEICFHLEDSL 522
Query: 538 EVNKQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLS--IMLSNNSRGYLACSIL 595
+ N++ S ++RH S+ R +Y+ ++F FY K LRTFL+ I + +L +
Sbjct: 523 DSNQKHTFSGSVRHSSFARCKYEVFRKFEDFYKAKNLRTFLALPIHMQYYDFFHLTDKVS 582
Query: 596 HQLL-KLQQLRVFTV--------------------LNLSRTNIRNLPESITKLYNLHTLL 634
H LL KL+ LRV ++ LNLS T I+ LP+S++ L+NL TL+
Sbjct: 583 HDLLPKLRYLRVLSLSHYEIRELPNSIGDLKHLRYLNLSCTIIQELPDSLSDLHNLQTLV 642
Query: 635 LEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRL 694
L C RL L NLI L HL ++T L+ MP + GKL LQTL F+VG + +
Sbjct: 643 LFRCRRLNRLPRGFKNLINLRHLDIAHTHQLEVMPPQMGKLKSLQTLSKFIVGKSKELGI 702
Query: 695 RELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPET-ET 753
+EL L+HLRG L I +L+NV + DA++A+L K +L+ LL+ W+ N FD ET E
Sbjct: 703 KELGDLLHLRGKLSILDLQNVVDIQDARDANLKDKHHLEELLMEWSSNMFDDSQNETIEL 762
Query: 754 RVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSL 813
VL L+P+ NL++ I Y G FP W+GD S SK+V L+ YC CT LPS+G+L SL
Sbjct: 763 NVLHFLQPNTNLKKLTIQSYGGLTFPYWIGDPSFSKMVCLELNYCRKCTLLPSLGRLSSL 822
Query: 814 KHLEVRGMSGVKRLSLEFYGNDSPI--PFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPK 871
K L V+GM GVK + +EFYG S PFP LE L FEDM EWEEW E +P+
Sbjct: 823 KKLCVKGMQGVKSVGIEFYGEPSLCVKPFPSLEFLRFEDMPEWEEWCSS------ESYPR 876
Query: 872 LRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRS- 930
LREL I C KL LP LP+L I C +LV + SLP L + C + + RS
Sbjct: 877 LRELEIHHCPKLIQKLPSHLPSLVKLDIIDCPKLVAPLPSLPFLRDLIVAECNEAMLRSG 936
Query: 931 -----------------------TTKHLGL--ILHIGGCPNLQSLVAEEEQEQQQLC--- 962
+ LG +L I C L+ L+ + C
Sbjct: 937 GDLTSLITLRLENISNLTFLNEGLVRFLGALEVLEICNCSELKFLLQSGVGFENLSCIRH 996
Query: 963 ----------------DLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSF 1006
L C LEYL ++ C L LP L +L+SLRE+ I+ C L S
Sbjct: 997 LVIVMCPKLVLLAEDQPLPCNLEYLEINKCASLEKLPIGLQSLTSLRELSIQKCPKLCSL 1056
Query: 1007 PEVALPSKLRLITIWDCEALKSLPEAWMCETNSS----LEILNIAGCSSLTYITGVQLPP 1062
E+ P L + ++DCE L+SLP+ M + LE L I C SL +LP
Sbjct: 1057 AEMDFPPMLISLELYDCEGLESLPDGMMINGENRNFCLLECLKIVHCPSLICFPRGELPS 1116
Query: 1063 SLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLE 1122
LK L I DC +++L EG+ + + LE L I RCP L+ F + LP+T++
Sbjct: 1117 KLKELEIIDCAKLQSLP--EGLILGDHTCH----LEFLRIHRCPLLSS-FPRGLLPSTMK 1169
Query: 1123 SLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSG-LHNLCQL 1181
LE+ N C +LESI+ L+++T+LE + I + LKI SG LH+L L
Sbjct: 1170 RLEIRN------------CKQLESIS-LLSHSTTLEYLRI---DRLKINFSGCLHSLKHL 1213
Query: 1182 QRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPE 1241
+ I+ C L SF E G L L I +C+ L++LP +++ T L+ L I D P
Sbjct: 1214 IELHIYSCSGLESFPERGFSSPNLKMLHIDDCKNLKSLPLQMQSFTSLRDLRIYDC--PN 1271
Query: 1242 RDPEDEDRLPTNLHSLNIDNMKSWK-SFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFP 1300
E+ L NL S I N K+ K +WG G +SLQ I +V F
Sbjct: 1272 LVSFAEEGLSLNLTSFWIRNCKNLKMPLYQWGLHG-----LTSLQTFVI----NNVAPFC 1322
Query: 1301 PEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLC---NCPKLKYF 1357
+ + L LP TLTYL I+ NLE LSS QNLT L++ +CPKL+ F
Sbjct: 1323 DHDSLPL-------LPRTLTYLSISKFHNLESLSSMGL--QNLTSLEILEIYSCPKLQTF 1373
Query: 1358 -PEKGLPASLLRLEISGCPLIEERYIKDGGQYRHLLTYIPCI 1398
P++GL A+L L I CP+IE R K+ G+ ++++IP I
Sbjct: 1374 LPKEGLSATLSNLRIKFCPIIEARCRKNKGEDWPMISHIPRI 1415
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495026|ref|XP_003634900.1| PREDICTED: uncharacterized protein LOC100854556 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/1431 (41%), Positives = 844/1431 (58%), Gaps = 134/1431 (9%)
Query: 1 MSIIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQR 60
M+ +GEA L A I+ LVD L L+ FA +EQ+ A+L KW+ +L+KI AVL DAEEKQ
Sbjct: 1 MAFVGEAFLSASIQKLVDMLACPDLRKFAREEQVHAELKKWEGILLKIHAVLHDAEEKQM 60
Query: 61 TDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTK 120
T++ V++WL +L +LA+DVED+L++F TEA RRKL+ +P + +T+
Sbjct: 61 TNRFVQIWLAELRDLAYDVEDILDDFATEALRRKLITDDP--------------QPSTST 106
Query: 121 FRKLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQR 180
R +I + + F +++ + M SK++EI R EI TQK LDL+E+ S + +R
Sbjct: 107 VRSIISSLSSRFNPNALVYNLNMGSKLEEITARLHEISTQKGDLDLRENVEERSNRKRKR 166
Query: 181 LP-TTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 239
+P TTSLV E++VYGRET+K+ I+E+LLRD+ +D VIPI+GMGG+GKTTLAQL Y+
Sbjct: 167 VPETTSLVVESRVYGRETDKEAILEVLLRDESIHDNEVCVIPIVGMGGVGKTTLAQLAYH 226
Query: 240 DHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFL 299
D RV++HFDL+AW CVS+DFDV+R+TKT+L+ I + +DLNLLQ +L ++LS KKFL
Sbjct: 227 DDRVKNHFDLRAWVCVSDDFDVLRITKTLLQSIASYAREINDLNLLQVKLKEKLSGKKFL 286
Query: 300 LVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCL 359
LVLDDVWNENY+ W + PL AG PGSK+I+TTRN V ++ T Y L+ LS DDC
Sbjct: 287 LVLDDVWNENYDKWDRLCTPLRAGGPGSKVIITTRNMGVASLTRTVSPYPLQELSNDDCR 346
Query: 360 SVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSN 419
+VF QH+L +R+F ++ ++ IG+++V +C GLPL AK LGG+LR + W+D+L S
Sbjct: 347 AVFAQHALGARNFEAHPHVKIIGEEMVNRCRGLPLVAKALGGILRNELNHEAWDDILKSK 406
Query: 420 IWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHE 479
IWDLPE++ G+LPAL++SY++L LKQCFAYC++ PK YEF+++E+ILLW+ EGFL +
Sbjct: 407 IWDLPEEKSGVLPALKLSYHHLPSHLKQCFAYCAIFPKGYEFKKDELILLWMGEGFLQTK 466
Query: 480 DRDEEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEV 539
+ + E+LG ++F EL SRSFF++SS+ +F+MHDL++DLA+ AG + F +E LE
Sbjct: 467 GK-KRMEDLGSKYFSELLSRSFFQQSSDVMPRFMMHDLIHDLAQSIAGNVSFNLEDKLEN 525
Query: 540 NKQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNN---SRGYLACSILH 596
N + I + RHLS+IR + K+F KYLRTFL++ +S + S ++ + H
Sbjct: 526 N--ENIFQKARHLSFIRQANEIFKKFEVVDKGKYLRTFLALPISVSFMKSLSFITTKVTH 583
Query: 597 QLL-KLQQLRVFTV--------------------LNLSRTNIRNLPESITKLYNLHTLLL 635
LL +++ LRV ++ LNL R++I+ LP S+ LYNL TL+L
Sbjct: 584 DLLMEMKCLRVLSLSGYKMSELPSSIDNLSHLRYLNLCRSSIKRLPNSVGHLYNLQTLIL 643
Query: 636 EDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLR 695
DC L + +GNLI L HL + T L+EMP R G LT LQTL F+VG GS ++
Sbjct: 644 RDCWSLTEMPVGMGNLINLRHLDIAGTSQLEEMPPRMGCLTNLQTLSKFIVGKGNGSSIQ 703
Query: 696 ELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRV 755
ELK L+ L+G L I L NV++ DA +A L K +++ L + W+ + DSR E V
Sbjct: 704 ELKHLLDLQGELSIQGLHNVRNTRDAVDACLKNKCHIEELTMGWSGDFDDSRNELNEMLV 763
Query: 756 LDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKH 815
L++L+P +NL++ + Y G KFP W+G+ S SK+ +L + CG CTSLP +G+L LK
Sbjct: 764 LELLQPQRNLKKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKA 823
Query: 816 LEVRGMSGVKRLSLEFYGNDSPI-PFPCLETLHFEDMKEWEEWIPRGSSQEIEG-FPKLR 873
L ++GM VK + EF+G S PFPCLE+L FEDM EWE+W +E EG F LR
Sbjct: 824 LRIQGMCKVKTIGDEFFGEVSLFKPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLR 883
Query: 874 ELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRS--- 930
EL I C KL G+LP LP+L I C +L ++ L +C + C +VV R+
Sbjct: 884 ELRIRECPKLTGSLPNCLPSLAELEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVD 943
Query: 931 ----TTKHLGLI-------------------LHIGGCPNLQSLVAE-------------- 953
TT ++ I L I GC + SL
Sbjct: 944 LSSLTTLNIQRISRLTCLREGFTQLLAALQKLVIRGCGEMTSLWENRFGLECLRGLESID 1003
Query: 954 -------EEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSF 1006
E E+Q+ L C L++L + C L LP L +L+ L E+ ++SC L SF
Sbjct: 1004 IWQCHGLESLEEQR---LPCNLKHLKIENCANLQRLPNGLQSLTCLEELSLQSCPKLESF 1060
Query: 1007 PEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKL 1066
PE+ LP LR + + C LK LP + + LE L I C L +LP SLK
Sbjct: 1061 PEMGLPPMLRSLVLQKCNTLKLLPHNY---NSGFLEYLEIEHCPCLISFPEGELPASLKQ 1117
Query: 1067 LLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEV 1126
L I DC +++TL E + +S S LE L I +C SL SL
Sbjct: 1118 LKIKDCANLQTLP-EGMMHHNSMVSNNSCCLEVLEIRKCSSLP-------------SLPT 1163
Query: 1127 GNLPQSLKFLDVWECPKLESIAER-LNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRIS 1185
G LP +LK L++W+C + + I+E+ L++NT+LE + I N N+KILP LH+L L
Sbjct: 1164 GELPSTLKRLEIWDCRQFQPISEKMLHSNTALEHLSISNYPNMKILPGFLHSLTYLY--- 1220
Query: 1186 IWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPE 1245
++ C LVSF E GLP L L I+ CE L++LP ++NL LQ L I + E P
Sbjct: 1221 MYGCQGLVSFPERGLPTPNLRDLYINNCENLKSLPHQMQNLLSLQELNIRNCQGLESFP- 1279
Query: 1246 DEDRLPTNLHSLNIDNMKSWK-SFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEED 1304
E L NL SL+I + + K EW GL+R +SL L I G + S ++
Sbjct: 1280 -ECGLAPNLTSLSIRDCVNLKVPLSEW-----GLHRLTSLSSLYISGVCPSLASLSDDDC 1333
Query: 1305 IGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLK 1355
+ LP+TL+ L I+ L +L L+ +L ++ + CPKL+
Sbjct: 1334 L---------LPSTLSKLFISKLDSLACLALKNL--SSLERISIYRCPKLR 1373
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147862409|emb|CAN81911.1| hypothetical protein VITISV_042289 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/1293 (43%), Positives = 782/1293 (60%), Gaps = 118/1293 (9%)
Query: 1 MSIIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQR 60
M+ +GEAIL A E L KL S L FA QEQ+ A+L KW+++L+KI AVLDDAEEKQ
Sbjct: 1 MAFVGEAILSALFETLFFKLASSDLLKFARQEQVHAELKKWEKILLKIHAVLDDAEEKQM 60
Query: 61 TDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTK 120
TD+ VK+WL +L +LA+DVED+L+EF TEA RRKL+ + +T+
Sbjct: 61 TDRLVKIWLDELRDLAYDVEDILDEFGTEALRRKLM---------------AETEPSTSM 105
Query: 121 FRKLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQR 180
LIP+CCT+F +++F M SKI+EI R QEI QK+ L L+E++ G S R
Sbjct: 106 VCSLIPSCCTSFNPSTVRFNVKMGSKIEEITARLQEISGQKNDLHLRENAGGSSYTMKSR 165
Query: 181 LPTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240
LPTTSLV+E++VYGRET+K+ I+ LLL+D+ +D VIPI+GMGG+GKTTLAQL +ND
Sbjct: 166 LPTTSLVDESRVYGRETDKEAILNLLLKDE-PSDDEVCVIPIVGMGGIGKTTLAQLAFND 224
Query: 241 HRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLL 300
+V+DHFDL+AW CVS+DFDV+R+TKTIL+ ++ T D +DLNLLQ L ++LS KFLL
Sbjct: 225 CKVEDHFDLRAWVCVSDDFDVVRVTKTILQSVSLDTHDVNDLNLLQVMLKEKLSGNKFLL 284
Query: 301 VLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLS 360
VLDDVWNEN +W + P+ AGAPGSK+I+TTRN+ V ++ GT AY L+ LS DCLS
Sbjct: 285 VLDDVWNENCEEWDILCSPMRAGAPGSKVIITTRNKGVASVAGTGSAYPLQELSHGDCLS 344
Query: 361 VFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNI 420
+FTQ +L +R F ++ L+E+G++IV +C GLPLAAK LGG+LR + W ++L S I
Sbjct: 345 LFTQQALGTRSFEAHPHLKELGEEIVRRCKGLPLAAKALGGMLRNEVNYDAWVNILKSKI 404
Query: 421 WDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHED 480
WDLP+++ +LPAL++SY++L LK+CFAYCS+ PKDYEF+++E+ILLW+AEGFL
Sbjct: 405 WDLPQEKSSVLPALKLSYHHLPSNLKRCFAYCSIFPKDYEFDKDELILLWMAEGFLQQTK 464
Query: 481 RDEEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVN 540
+++ E+LG ++F +L SRSFF++SS ++SKFVMHDL+NDLA + AGE+ F ++ LE N
Sbjct: 465 GEDQPEDLGAKYFCDLLSRSFFQQSSYNSSKFVMHDLINDLAHFVAGELCFNLDDKLENN 524
Query: 541 KQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNS-RGYLACSILHQLL 599
+ RH S+ R ++ +K+F FY +K+LRT +++ ++ S +++ ++H LL
Sbjct: 525 EXFTSFEKARHSSFNRQSHEVLKKFETFYRVKFLRTLIALPINALSPSNFISPKVIHDLL 584
Query: 600 ---------------------KLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDC 638
+ LR LNLS ++I+ LP+SI LYNL TL+L DC
Sbjct: 585 IQKSCLRVLSLSGYRISELPNSIGDLRHLRYLNLSYSSIKRLPDSIVHLYNLQTLILRDC 644
Query: 639 DRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELK 698
RL L +IGNL+ L HL ++T L EMP + G LT LQTL F+VG+ +REL+
Sbjct: 645 YRLTELPIEIGNLLNLRHLDITDTSQLLEMPSQIGSLTNLQTLSKFIVGSGSSLGIRELR 704
Query: 699 FLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDM 758
L++L+G L IS L NV +V DAK+A+L+ K+N+K L + W+ + ++R E VL+
Sbjct: 705 NLLYLQGKLSISGLHNVVNVQDAKDANLADKQNIKELTMEWSNDFRNARNETEEMHVLES 764
Query: 759 LKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEV 818
L+PH+NL++ + Y G++ P W+ + S + L + C MCTSLPS+G+L LK L +
Sbjct: 765 LQPHRNLKKLMVAFYGGSQLPCWIKEPSCPMMTHLILKNCKMCTSLPSLGRLPLLKDLHI 824
Query: 819 RGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHIS 878
G+S + +SLEFYG +S PFP LE L FE+M +W+ W +E E FP LREL I
Sbjct: 825 EGLSKIMIISLEFYG-ESVKPFPSLEFLKFENMPKWKTWSFPDVDEEXELFPCLRELTIR 883
Query: 879 RCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLI 938
+C KL LP LP+L I C L V +L K + C K++ RS GL
Sbjct: 884 KCPKLDKGLP-NLPSLVTLDIFECPNLAVPFSRFASLRKLNAEECDKMILRSGVDDSGLT 942
Query: 939 -----------------LHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVT 981
IG C +V+ EEQ L C L+ L + C L
Sbjct: 943 SWWRDGFGLENLRCLESAVIGRC---HWIVSLEEQR------LPCNLKILKIKDCANLDR 993
Query: 982 LPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSL 1041
LP L S+ E+ I C LVSF E+ LR + + DC +L P+
Sbjct: 994 LPNG---LRSVEELSIERCPKLVSFLEMGFSPMLRYLLVRDCPSLICFPKG--------- 1041
Query: 1042 EILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLV 1101
+LPP+LK L I C ++ +L EG +S+ + L+ L+
Sbjct: 1042 -----------------ELPPALKXLEIHHCKNLTSLP--EGTMHHNSN--NTCCLQVLI 1080
Query: 1102 IGRCPSLTCLFSKNGLPATLESLEVGNL-------------PQSLKFLDVWECPKLESIA 1148
I C SLT F + LP+TL+ LE+ N ++L+ L + +CP LES
Sbjct: 1081 IRNCSSLTS-FPEGKLPSTLKRLEIRNCLKMEQISENMLQNNEALEELWISDCPGLESFI 1139
Query: 1149 ERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRL 1208
ER +L + I NC+NLK LP + NL L+ +S+W C +VSF GGL LT L
Sbjct: 1140 ERGLPTPNLRQLKIVNCKNLKSLPPQIQNLTSLRALSMWDCPGVVSFPVGGL-APNLTVL 1198
Query: 1209 EISECERLEALPR---GLRNLTCLQHLTIGDVL 1238
EI +CE L+ +P GL +LT L L I DVL
Sbjct: 1199 EICDCENLK-MPMSEWGLHSLTYLLRLLIRDVL 1230
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487172|ref|XP_002264364.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2453), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/1318 (42%), Positives = 783/1318 (59%), Gaps = 71/1318 (5%)
Query: 3 IIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTD 62
+GEAIL I+ L+D + L FA + + ++L KWK++L+KI AVL DAEEKQ TD
Sbjct: 4 FVGEAILSGFIQKLIDMVNPPELWNFASEGHVHSELNKWKKILMKIYAVLHDAEEKQMTD 63
Query: 63 QSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFR 122
VKMWL +L +LA+DVED+L+ F T+A RR L+ A H S + +T+K R
Sbjct: 64 PLVKMWLDELGDLAYDVEDILDGFVTQALRRNLM-----AETH-----PSGTQPSTSKLR 113
Query: 123 KLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAG-GSKKAMQRL 181
LIP+CCT+FT ++IKF M SKIK+I R QEI QK+ L L+E+ AG S K + L
Sbjct: 114 SLIPSCCTSFTPNAIKFNAEMWSKIKKITARLQEISAQKNDLHLRENIAGESSTKTREIL 173
Query: 182 PTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241
PTTSLV+E++VYGRET+K I LLLRDD D VIP++GM G+GKTTLAQL +ND
Sbjct: 174 PTTSLVDESRVYGRETDKAAIANLLLRDDPCTDE-VCVIPVVGMAGIGKTTLAQLAFNDD 232
Query: 242 RVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLV 301
++ HFDL+ W VS+DFDV+++TKTIL+ ++ T D +DLNLLQ L + LS KKFLL+
Sbjct: 233 EIKAHFDLRVWVYVSDDFDVLKITKTILQSVSPNTQDVNDLNLLQMTLREGLSGKKFLLI 292
Query: 302 LDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSV 361
LDDVWNEN++ W + P+ +G PGSK+IVTTRN+ V +I T AY+L L+ DCLSV
Sbjct: 293 LDDVWNENFDSWDFLCMPMRSGEPGSKLIVTTRNEGVASITRTYRAYRLHELAYKDCLSV 352
Query: 362 FTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIW 421
FTQ +L +F ++ L+E+G++IV +C GLPLAAK LGG+LR + WE++L S IW
Sbjct: 353 FTQQALGKSNFDAHSHLKEVGEEIVRRCKGLPLAAKALGGMLRNQVSHDAWENILTSKIW 412
Query: 422 DLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDR 481
DLPED+ +LPAL++SY++L LK+CFAYCS+ PK YEF+++E+I LW+AEGF
Sbjct: 413 DLPEDKSQVLPALKLSYHHLPSHLKKCFAYCSIFPKGYEFDKDELIQLWMAEGFFQQTKE 472
Query: 482 DEEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNK 541
+ E+LG ++F +L SRSFF++S++D+S+FVMHDL+NDLA++ AGE F +EG L N
Sbjct: 473 NTRPEDLGSKYFYDLLSRSFFQQSNHDSSRFVMHDLINDLAQYVAGEFCFNLEGILVNNN 532
Query: 542 QQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSR-GYLACSILHQLLK 600
Q + RH S+ R EY+ ++RF F+ +K LRT +S+ L+ SR ++ +++ L+K
Sbjct: 533 QSTTFKKARHSSFNRQEYEMLERFKAFHKMKCLRTLISLPLNAFSRYHFIPSKVINNLVK 592
Query: 601 ----------------------LQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDC 638
+ LR LNLS ++I+ LP S+ LYNL TL+L DC
Sbjct: 593 QFECLRVLSLSGYYISGELPHSIGDLRHLRYLNLSNSSIKMLPNSVGHLYNLQTLILSDC 652
Query: 639 DRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELK 698
RL L IG LI L H+ S T LQEMP + LT LQTL ++VG + SR+REL+
Sbjct: 653 WRLTKLPVVIGGLINLRHIDISGTSQLQEMPFKISNLTNLQTLSKYIVGKNDNSRIRELE 712
Query: 699 FLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDM 758
L LRG L IS L NV + DA A L K N++ L + W + R E VL
Sbjct: 713 NLQDLRGKLSISGLHNVVNSQDAMHAKLEEKHNIEELTMEWDSDYDKPRNEMNEMNVLAG 772
Query: 759 LKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEV 818
L+P NL++ + Y G+ F W+ D S + L + C CTSLPS+G+L LK L +
Sbjct: 773 LRPPTNLKKLTVAYYGGSTFLGWIRDPSFPSMTQLILKNCQRCTSLPSLGKLSFLKTLHI 832
Query: 819 RGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHIS 878
+GMS ++ + +EFYG PFP LE L FE+M +WE+W + + +E FP+LREL I
Sbjct: 833 KGMSEIRTIDVEFYGGVVQ-PFPSLEFLKFENMPKWEDWFFPDAVEGVELFPRLRELTIR 891
Query: 879 RCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRS--TTKHLG 936
CSKL LP+ LP+L I C L V +L + I+ CK +V RS
Sbjct: 892 NCSKLVKQLPDCLPSLVKLDISKCRNLAVPFSRFASLGELNIEECKDMVLRSGVVADSRD 951
Query: 937 LILHIGGCPNLQSLVAEEEQEQQQLCD--LSCKLEYLGLSYCQGLVTLPQSLLNLSSLRE 994
+ C L+S V L D L L+ L ++ C L +L L NL+ L E
Sbjct: 952 QLTSRWVCSGLESAVIGRCDWLVSLDDQRLPSHLKMLKIADCVNLKSLQNGLQNLTCLEE 1011
Query: 995 IYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTY 1054
+ + C ++ SFPE LP LR + + C +L+SLP + ++ LE L I C SL
Sbjct: 1012 LEMMGCLAVESFPETGLPPMLRRLVLQKCRSLRSLPHNY---SSCPLESLEIRCCPSLIC 1068
Query: 1055 ITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSS-LLEHLVIGRCPSLTCLFS 1113
LP +LK L++ DC IR + +G+ +S + L+ L I C SL F
Sbjct: 1069 FPHGGLPSTLKQLMVADC--IRLKYLPDGMMHRNSIHSNNDCCLQILRIHDCKSLK-FFP 1125
Query: 1114 KNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERL-NNNTSLEVIDIGNCENLKILP 1172
+ LP TLE LE+ + C LE ++E++ NNT+LE +++ NLKILP
Sbjct: 1126 RGELPPTLERLEIRH------------CSNLEPVSEKMWPNNTALEYLELRGYPNLKILP 1173
Query: 1173 SGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHL 1232
LH++ QL+ I CG L F E G L L I CE L+ LP ++NLT L+ L
Sbjct: 1174 ECLHSVKQLK---IEDCGGLEGFPERGFSAPNLRELRIWRCENLKCLPHQMKNLTSLRVL 1230
Query: 1233 TIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFI-EWGQGGGGLNRFSSLQQLRI 1289
++ D SP + E L NL L+I N K+ K+ + EW GL+ ++L L+I
Sbjct: 1231 SMED--SPGLESFPEGGLAPNLKFLSIINCKNLKTPVSEW-----GLHTLTALSTLKI 1281
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147775060|emb|CAN77204.1| hypothetical protein VITISV_014782 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/1452 (41%), Positives = 828/1452 (57%), Gaps = 172/1452 (11%)
Query: 1 MSIIGEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQR 60
M ++GE +L A ++L DKL S FA QE I + L KW+ L I+ VL+DAE+KQ
Sbjct: 1 MEVVGELLLSAAFQVLFDKLASSDFLTFARQEHIHSQLKKWETQLFNIREVLNDAEDKQI 60
Query: 61 TDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTK 120
SVK+WL +L LA+D+ED+L+EF TE RRKL + Q ++ +TT+K
Sbjct: 61 ASSSVKLWLAELRILAYDMEDILDEFNTEMLRRKLAV-----------QPQAAXAATTSK 109
Query: 121 FRKLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQR 180
LIPTCCT+FT + F M SKIK+I R ++I T+K L L E AG + +R
Sbjct: 110 VWSLIPTCCTSFTPSHVTFNVSMGSKIKDITSRLEDISTRKAQLGL-EKVAGTTTTTWKR 168
Query: 181 LPTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240
PTTSL NE +V+GR+ +K +IV+LLL D+ +V+PI+GMGGLGKTTLA+ YND
Sbjct: 169 TPTTSLFNEPQVHGRDDDKNKIVDLLLSDE------SAVVPIVGMGGLGKTTLARFAYND 222
Query: 241 HRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLL 300
V HF +AW CVS++FDV+++TK IL I+ Q D D N LQ EL+ L+ K+FLL
Sbjct: 223 DAVVKHFSPRAWVCVSDEFDVVKITKAILNAISPQGNDSKDFNQLQVELSHSLAGKRFLL 282
Query: 301 VLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQ--LKRLSTDDC 358
VLDDVWN NY DW ++ P GA GSK+IVTTRN V +M + Y LK LS DDC
Sbjct: 283 VLDDVWNRNYEDWNNLRSPFRGGAKGSKVIVTTRNTHVALMMEPSVTYHHSLKPLSYDDC 342
Query: 359 LSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNS 418
SVF QH+ ++RD + +L+ IGKKIV KC+GLPLAAK LGGLLR KH +WE VLNS
Sbjct: 343 WSVFVQHAFENRDIQEHPNLKSIGKKIVEKCDGLPLAAKVLGGLLRSKHRDDEWEHVLNS 402
Query: 419 NIWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDH 478
IW LP+ CGI+PALR+SY++L LK+CF YC+ P+DYEF+E E+ILLW+AEG +
Sbjct: 403 KIWILPDTECGIIPALRLSYHHLPAQLKRCFVYCATFPQDYEFKETELILLWMAEGLIQP 462
Query: 479 EDRDEEKEELGHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLE 538
+ +++ E+LG ++F+EL SRSFF++S N S+FVMHDL++DLA+ AG++ F +E LE
Sbjct: 463 LEGNKQMEDLGAEYFRELVSRSFFQRSGNGGSQFVMHDLISDLAQSVAGQLCFNLEDKLE 522
Query: 539 VNKQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQL 598
NK ISR+ RH+SY R +Y+ K+F +++ LRTF+++ + G C++ ++
Sbjct: 523 HNKNHIISRDTRHVSYNRCKYEIFKKFEALNEVEKLRTFIALPIYG---GPSWCNLTSKV 579
Query: 599 L-----KLQQLRVFTV--------------------LNLSRTNIRNLPESITKLYNLHTL 633
KL+ LR ++ LNLSRT I LPESI++LYNL L
Sbjct: 580 FSCLFPKLRYLRALSLSGYSIKELPNSVGDLKHLRYLNLSRTAIERLPESISELYNLQAL 639
Query: 634 LLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVV-GNDRGS 692
+L C L L IGNL+ L HL ++T L++MP G L LQTL F+V N+ S
Sbjct: 640 ILCQCRYLAMLPKSIGNLVDLRHLDITDTRMLKKMPPHLGNLVNLQTLSKFIVEKNNSSS 699
Query: 693 RLRELKFLM-HLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPET 751
++ELK LM +RGTL IS L NV DA + L GK N+K L + W + D+R +
Sbjct: 700 SIKELKKLMSKIRGTLSISGLHNVVDAQDAMDVDLKGKHNIKDLTMEWGNDFDDTRNEQN 759
Query: 752 ETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLR 811
E +VL++L+PH+NLE+ I+ Y G FP W+G+ S S +V L + C CT LPS+GQL
Sbjct: 760 EMQVLELLQPHKNLEKLTISFYGGGIFPSWIGNPSFSLMVQLCLKGCRNCTLLPSLGQLS 819
Query: 812 SLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPK 871
SLK+L ++GMSG+K + +EFYG + F LE+L F DM EWEEW E FP+
Sbjct: 820 SLKNLRIQGMSGIKNIDVEFYGPNVE-SFQSLESLTFSDMPEWEEWRSPSFIDEERLFPR 878
Query: 872 LRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMS--LPALCKFKIDGCKKVVWR 929
LREL ++ C KL LP+ LP E+ +++C E V+ ++ +L +I CK+V W
Sbjct: 879 LRELKMTECPKLIPPLPKVLPLHEL-KLEACNEEVLGRIAADFNSLAALEIGDCKEVRWL 937
Query: 930 STTKHLGL-ILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLN 988
K GL L + GC L SL EE L C LEYL + C+ L LP L +
Sbjct: 938 RLEKLGGLKSLTVCGCDGLVSL--EEPA-------LPCSLEYLEIEGCENLEKLPNELQS 988
Query: 989 LSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMC------ETNSS-- 1040
L S E+ IR C L++ E P LR + + DCE +K+LP WM TNSS
Sbjct: 989 LRSATELVIRRCPKLMNILEKGWPPMLRKLEVSDCEGIKALPGDWMMMRMDGDNTNSSCV 1048
Query: 1041 LEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHL 1100
LE + I C SL + +LP SLK L+I C+++++L EGI + + LE L
Sbjct: 1049 LERVEIRRCPSLLFFPKGELPTSLKQLIIRYCENVKSLP--EGIMRNCN-------LEQL 1099
Query: 1101 VIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVI 1160
IG C SLT S G L +LK L++W C LE + + N L +
Sbjct: 1100 YIGGCSSLT-------------SFPSGELTSTLKRLNIWNCGNLELPPDHMPN---LTYL 1143
Query: 1161 DIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTR-LEISECERLEA- 1218
+I C+ LK L NL L+ + I C +L S EGGL A R + I CE+L+
Sbjct: 1144 NIEGCKGLK--HHHLQNLTSLECLYITGCPSLESLPEGGLGFAPNLRFVTIVNCEKLKTP 1201
Query: 1219 -LPRGLRNLTCLQHLTIG-----DVLSPERDPED-EDRLPTNLHSLNIDNMKSWKSFIEW 1271
GL L L+ LTI +V+S +D RLPT+L L+I N ++ +S
Sbjct: 1202 LSEWGLNRLLSLKVLTIAPGGYQNVVSFSHGHDDCHLRLPTSLTDLHIGNFQNLESM--- 1258
Query: 1272 GQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLE 1331
+LPLP L +LE
Sbjct: 1259 ---------------------------------------ASLPLPT---------LVSLE 1270
Query: 1332 RLSSSIFYHQNLTKLKLCNCPKLKYFPEKGLPASLLRLEISGCPLIEERYIKDGGQYRHL 1391
RL Y +N KL+ ++ P++GLPA+L LEI GCP+IE+R +K+GG+
Sbjct: 1271 RL-----YIRNCPKLQ-------QFLPKEGLPATLGWLEIWGCPIIEKRCLKNGGEDWPH 1318
Query: 1392 LTYIPCIIINGR 1403
+ +IP I I GR
Sbjct: 1319 IAHIPVIDI-GR 1329
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1416 | ||||||
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.416 | 0.559 | 0.397 | 2.2e-131 | |
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.411 | 0.408 | 0.336 | 1.1e-104 | |
| UNIPROTKB|O48647 | 1802 | O48647 "XA1" [Oryza sativa (ta | 0.619 | 0.486 | 0.279 | 7.2e-64 | |
| TAIR|locus:504956483 | 847 | AT3G46730 [Arabidopsis thalian | 0.442 | 0.739 | 0.282 | 1.8e-42 | |
| TAIR|locus:2075170 | 835 | RPP13 "RECOGNITION OF PERONOSP | 0.455 | 0.772 | 0.264 | 1.9e-41 | |
| TAIR|locus:2037623 | 899 | AT1G58410 [Arabidopsis thalian | 0.483 | 0.761 | 0.266 | 1.5e-40 | |
| TAIR|locus:2078012 | 852 | ZAR1 "HOPZ-ACTIVATED RESISTANC | 0.449 | 0.746 | 0.250 | 8.8e-40 | |
| TAIR|locus:2037639 | 907 | AT1G58390 "AT1G58390" [Arabido | 0.495 | 0.773 | 0.258 | 1.1e-37 | |
| TAIR|locus:2011982 | 857 | AT1G50180 [Arabidopsis thalian | 0.337 | 0.557 | 0.275 | 9.8e-37 | |
| TAIR|locus:2169523 | 901 | AT5G35450 [Arabidopsis thalian | 0.493 | 0.775 | 0.247 | 2.6e-36 |
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1096 (390.9 bits), Expect = 2.2e-131, Sum P(3) = 2.2e-131
Identities = 249/627 (39%), Positives = 363/627 (57%)
Query: 145 SKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQRLPTTSLVNEAKVYGRETEKKEIVE 204
++++++ R + + +Q+++L LKE +A K QRLPTTSLV+E++V+GR+ +K EI+
Sbjct: 128 TRLEKVTIRLERLASQRNILGLKELTAMIPK---QRLPTTSLVDESEVFGRDDDKDEIMR 184
Query: 205 XXXXXXXXNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRL 264
D G +V+ I+G+GG+GKTTL+QL+YND V+ +F K W VS +FDV ++
Sbjct: 185 FLIPENG-KDNGITVVAIVGIGGVGKTTLSQLLYNDQHVRSYFGTKVWAHVSEEFDVFKI 243
Query: 265 TKTILRCITKQTID--DSDXXXXXXXXXXXXSRKKFLLVLDDVWNENYNDWVDMSRPLEA 322
TK + +T + + D D + FLLVLDD+WNEN+ DW + +P
Sbjct: 244 TKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFLLVLDDLWNENFADWDLLRQPFIH 303
Query: 323 GAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIG 382
A GS+I+VTTR+Q V +IM + L+ LS DC S+F + +++ N+ + ++
Sbjct: 304 AAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTVFGNQEPCLNREIGDLA 363
Query: 383 KKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPEDRCGILPALRVSYYYLS 442
++IV KC GLPLA KTLGG+LR + +WE VL+S IWDLP D+ +LP LRVSYYYL
Sbjct: 364 ERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPVLRVSYYYLP 423
Query: 443 PPLKQCFAYCSLLPKDYXXXXXXXXXXXXXXGFLDHEDRDEEKEELGHQFFQELCSRSFF 502
LK+CFAYCS+ PK + GFL + EELG+++F EL SRS
Sbjct: 424 AHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLL 483
Query: 503 EKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNKQQRISRNLRHLSYIRGEYDGV 562
+K+ ++++MHD +N+LA++A+GE E + ++S R+LSY+R Y
Sbjct: 484 QKTK---TRYIMHDFINELAQFASGEF----SSKFEDGCKLQVSERTRYLSYLRDNYAEP 536
Query: 563 KRFAGFYDIKYLRTFLSIMLSNNSRGY-LACSILHQLLK-LQQLRVFTV----------- 609
F ++K+LRTFL + L+N+SR L + +LL L +LRV ++
Sbjct: 537 MEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPD 596
Query: 610 ----------LNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKN 659
L+LSRT + LP+S+ +YNL TLLL C LK L DI NLI L +L
Sbjct: 597 FFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDL 656
Query: 660 SNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVG 719
T L++MP RFG+L LQTL F V GSR+ EL L L G L I L+ V V
Sbjct: 657 IGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVA 715
Query: 720 DAKEAHLSGKKNLKVLLLRWARNSFDS 746
DA EA+L+ KK+L+ + W S S
Sbjct: 716 DAAEANLNSKKHLREIDFVWRTGSSSS 742
|
|
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 1.1e-104, Sum P(3) = 1.1e-104
Identities = 209/621 (33%), Positives = 317/621 (51%)
Query: 146 KIKEINDRFQEIVTQKDLLDLKESSAGGS---KKAMQRLPTTSLVNEAKVYGRETEKKEI 202
K++++ + V +++ LKE S ++A + P + + ++ GR +K +
Sbjct: 121 KMEKVVRLLEHHVKHIEVIGLKEYSETREPQWRQASRSRPDD--LPQGRLVGRVEDKLAL 178
Query: 203 VEXXXXXXXXNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262
V + G +VI ++GM G+GKTTL ++V+ND+RV +HF++K W +F+V
Sbjct: 179 VNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHFEVKMWISAGINFNVF 238
Query: 263 RLTKTILRCITKQTIDDSDXXXXXXXXXXXXSRKKFLLVLDDVWNENYNDWVDMSRPLEA 322
+TK +L+ IT ++ D S K+FLLVLDD W+E+ ++W
Sbjct: 239 TVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESDSEWESFQVAFTD 298
Query: 323 GAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSS-NKSLEEI 381
GSKI++TTR++ V + YQ+K ++ ++C + ++ + + S N+ LE I
Sbjct: 299 AEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNISVGSINQELEGI 358
Query: 382 GKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPEDRCGILPALRVSYYYL 441
GK+I +C GLPLAA+ + LR K P DW V + N ILP L++SY L
Sbjct: 359 GKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAV-SKNFSSYTNS---ILPVLKLSYDSL 414
Query: 442 SPPLKQCFAYCSLLPKDYXXXXXXXXXXXXXXGFLDHEDRDEEK-EELGHQFFQELCSRS 500
P LK+CFA CS+ PK + L ++ R + E++G+ + +L ++S
Sbjct: 415 PPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLL-YQPRSSRRLEDIGNDYLGDLVAQS 473
Query: 501 FFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNKQQRISRNLRHLSYIRGEYD 560
FF++ + FVMHDL+NDLA+ +G+ F LE + I RH S+ R + D
Sbjct: 474 FFQRLDITMTSFVMHDLMNDLAKAVSGDFCF----RLEDDNIPEIPSTTRHFSFSRSQCD 529
Query: 561 GVKRFAGFYDIKYLRTFL---------SIMLS--------NNSRGYLACSILH-QLLKLQ 602
F ++LRT L S+ L+ N G S+ H Q+ L
Sbjct: 530 ASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLP 589
Query: 603 Q----LRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLK 658
+ L++ L+LS T I+ LPE + L NL TLLL +C L +L I LI L L
Sbjct: 590 KSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLD 649
Query: 659 NSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHV 718
T L EMP KL LQ L NFV+G G+ L ELK L HLRGTL IS L+NV
Sbjct: 650 LVGT-PLVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFA 708
Query: 719 GDAKEAHLSGKKNLKVLLLRW 739
+AK+A L K L L+L+W
Sbjct: 709 SEAKDAGLKRKPFLDGLILKW 729
|
|
| UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 7.2e-64, Sum P(2) = 7.2e-64
Identities = 276/989 (27%), Positives = 453/989 (45%)
Query: 145 SKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQ---RLPTTSLVNEAKVYGRETEKKE 201
++I+ + + +E V + L + SS+ S++ T+S + E VYGR E E
Sbjct: 248 NRIQCMTHQLEEAVNEVMRL-CRSSSSNQSRQGTPPATNATTSSYLPEPIVYGRAAEM-E 305
Query: 202 IVEXXXXXXXXNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261
++ N G +V+PI+G GG+GKTTLAQLV D ++ F++K W VS+ FDV
Sbjct: 306 TIKQLIMSNRSN--GITVLPIVGNGGIGKTTLAQLVCKDLVIKSQFNVKIWVYVSDKFDV 363
Query: 262 IRLTKTILRCITKQTIDD-SDXXXXXXXXXXXXSRKKFLLVLDDVWNENYNDWVDMSRPL 320
+++T+ IL ++ Q+ + S+ KKFL+VLDDVW +DW + PL
Sbjct: 364 VKITRQILDHVSNQSHEGISNLDTLQQDLEEQMKSKKFLIVLDDVWEIRTDDWKKLLAPL 423
Query: 321 EAG---------APGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRD 371
A G+ II+TTR Q + +GT + +L+ L DD S+F H+ +
Sbjct: 424 RPNDQVNSSQEEATGNMIILTTRIQSIAKSLGTVQSIKLEALKDDDIWSLFKVHAFGNDK 483
Query: 372 FSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPEDRCGIL 431
S+ L+ +GK+I + G PLAAKT+G LL W+ ++ S W + GI+
Sbjct: 484 HDSSPGLQVLGKQIASELKGNPLAAKTVGSLLGTNLTIDHWDSIIKSEEWKSLQQAYGIM 543
Query: 432 PALRVSYYYLSPPLKQCFAYCSLLPKDYXXXXXXXXXXXXXXGFLDHEDRDEEKEELGHQ 491
AL++SY +LS PL+QC +YCSL PK Y GF+ E+ E+ E+ G +
Sbjct: 544 QALKLSYDHLSNPLQQCVSYCSLFPKGYSFSKAQLIQIWIAQGFV--EESSEKLEQKGWK 601
Query: 492 FFQELCSRSFFEK--SSNDTSK-FVMHDLVNDLARWAAGEIYFIMEGTLEVNKQQRISRN 548
+ EL + F ++ S+ +S+ FVMHDL++DLA+ + Y ++G+ E + ++ +
Sbjct: 602 YLAELVNSGFLQQVESTRFSSEYFVMHDLMHDLAQKVSQTEYATIDGS-ECTE---LAPS 657
Query: 549 LRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFT 608
+RHLS + D R + +I F ++ SR L +L + F
Sbjct: 658 IRHLSIVT---DSAYRKEKYRNISRNEVFEKRLMKVKSRSKLRSLVLIGQYDSHFFKYFK 714
Query: 609 VLNLSRTNIRNLPESITKLYN-----LHTLLLEDCDR-LKTLCADIGNLIKLHHLKNSNT 662
++R L IT Y L +L+ R LK + + G + L+
Sbjct: 715 DAFKEAQHLRLL--QITATYADSDSFLSSLVNSTHLRYLKIVTEESGRTLP-RSLRKYYH 771
Query: 663 ISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTL-DISNLENVKHVGD- 720
+ + ++ RFG + + N + N+ S LR L + ++ +I + +++ +G+
Sbjct: 772 LQVLDIGYRFG----IPRISNDI--NNLLS-LRHLVAYDEVCSSIANIGKMTSLQELGNF 824
Query: 721 AKEAHLSGKK--NLKVL--LLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCI------ 770
+ +LSG + LK + L++ + + ++ V E LK Q+LE+ +
Sbjct: 825 IVQNNLSGFEVTQLKSMNKLVQLSVSQLEN-VRTQEEACGAKLKDKQHLEKLHLSWKDAW 883
Query: 771 NGYRGTK-FPIWLG-DSSL-SKLVTLKFQYCGMCTSLPSVGQLRS-LKHLEV-RGMS--- 822
NGY + + G D ++ ++ L SL + S L EV G+
Sbjct: 884 NGYDSDESYEDEYGSDMNIETEGEELSVGDANGAQSLQHHSNISSELASSEVLEGLEPHH 943
Query: 823 GVKRLSLEFY-GNDSPIPFP----CLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHI 877
G+K L + Y G+ SP P CL+TLH E +W+ +P +E L +L +
Sbjct: 944 GLKYLRISGYNGSTSPTWLPSSLTCLQTLHLEKCGKWQI-LP------LERLGLLVKLVL 996
Query: 878 SRCSKLRGTLPERLPALEMFVIQSCEEL----VVSVMSLPALCK-FKIDGCK--KVV-WR 929
K+R +P+LE V+ + L S+ +L + K KI C KV
Sbjct: 997 I---KMRNATELSIPSLEELVLIALPSLNTCSCTSIRNLNSSLKVLKIKNCPVLKVFPLF 1053
Query: 930 STTKHLGLILHIGGCPNLQSLVAXXXXXXXXLCDLSC---KLEYLGLS-YCQ-GLVTLPQ 984
++ + P+L L C LSC L +S Y + G TLPQ
Sbjct: 1054 EISQKFEIERTSSWLPHLSKLTIYN-------CPLSCVHSSLPPSAISGYGEYGRCTLPQ 1106
Query: 985 SLLNLSSLREIYIRSCSSLVSFPEVALP-SKLRLITIWDCEALKSLPEAWMCETNSSLEI 1043
SL E+YI S P + + LR + + L SL + C ++LE
Sbjct: 1107 SL------EELYIHEYSQETLQPCFSGNLTLLRKLHVLGNSNLVSL-QLHSC---TALEE 1156
Query: 1044 LNIAGCSSLTYITGVQLPPSLKLLLIFDC 1072
L I C SL+ + G+QL +L+LL C
Sbjct: 1157 LIIQSCESLSSLDGLQLLGNLRLLRAHRC 1185
|
|
| TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 196/695 (28%), Positives = 310/695 (44%)
Query: 176 KAMQRLPTTSLVNEAKVYGRETEKKEIVEXXXXXXXXNDGGFSVIPIIGMGGLGKTTLAQ 235
+ ++R P E V G E + K I+ D + +I I GMGGLGKT LA+
Sbjct: 148 RQLRRAPPVD--QEELVVGLEDDVK-ILLVKLLSDNEKDKSY-IISIFGMGGLGKTALAR 203
Query: 236 LVYNDHRVQDHFDLKAWTCVSNDF---DV-IRLTKTILRCITKQTIDD----SDXXXXXX 287
+YN V+ FD +AWT VS ++ D+ IR+ ++ L ++ + ++ +
Sbjct: 204 KLYNSGDVKRRFDCRAWTYVSQEYKTRDILIRIIRS-LGIVSAEEMEKIKMFEEDEELEV 262
Query: 288 XXXXXXSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV-AIMGTAP 346
K +++V+DDVW+ + W + R L GSK+I+TTR + + + GT
Sbjct: 263 YLYGLLEGKNYMVVVDDVWDPDA--WESLKRALPCDHRGSKVIITTRIRAIAEGVEGTVY 320
Query: 347 AYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGK 406
A++L+ L+ ++ ++F + + + + ++ L+ GK++V KC GLPLA L GLL K
Sbjct: 321 AHKLRFLTFEESWTLFERKAFSNIE-KVDEDLQRTGKEMVKKCGGLPLAIVVLSGLLSRK 379
Query: 407 HGPSDWEDVLNSNIWD-LPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYXXXXXX 465
++W +V S +W L ++ I +S+ + LK CF Y S+ P+DY
Sbjct: 380 R-TNEWHEVCAS-LWRRLKDNSIHISTVFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEK 437
Query: 466 XXXXXXXXGFLDHEDRDEEKEELGHQFFQELCSRSFFEKSSNDTSKFV---MHDLVNDLA 522
GF+ ED + E++ + EL RS + + K + +HDL+ DLA
Sbjct: 438 LIHLLVAEGFIQ-EDEEMMMEDVARCYIDELVDRSLVKAERIERGKVMSCRIHDLLRDLA 496
Query: 523 RWAAGEIYFIMEGTLEVNKQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIML 582
A E+ F+ + + R + H ++ +Y R K +R+FL I
Sbjct: 497 IKKAKELNFVNVYNEKQHSSDICRREVVH--HLMNDYYLCDRRVN----KRMRSFLFI-- 548
Query: 583 SNNSRGYLACSILHQLLKLQQLRVFTVLNLS--RTNIRN-LPESITKLYNLHTLLLEDCD 639
RG+ + + LKL+ LRV + L NI N LP+ I +L +L L + D
Sbjct: 549 -GERRGFGYVNTTN--LKLKLLRVLNMEGLLFVSKNISNTLPDVIGELIHLRYLGIADT- 604
Query: 640 RLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGN---DRGSRLRE 696
+ L A I NL L L S Q KLT L+ + VG G L+
Sbjct: 605 YVSILPASISNLRFLQTLDASGNDPFQ-YTTDLSKLTSLRHVIGKFVGECLIGEGVNLQT 663
Query: 697 LKF--------LMH--LRGTLDISNLENVKHVGDAKEAHL-----SGKKNLKVLLLRWAR 741
L+ L H LR D+ ++ K V D + L S KNL+VL L R
Sbjct: 664 LRSISSYSWSKLNHELLRNLQDLEIYDHSKWV-DQRRVPLNFVSFSKPKNLRVLKLEM-R 721
Query: 742 NSFDSRVPETETRVLDMLKPHQNLEEFCING--YRGTKFPIWLGDSSLSKLVTLKFQYCG 799
N S T ++D+ P +LE + G P L LV Y G
Sbjct: 722 NFKLSSESRTTIGLVDVNFP--SLESLTLVGTTLEENSMPALQKLPRLEDLVLKDCNYSG 779
Query: 800 ---MCTSLPSVGQLRSLK-HLEVRGMSGVKRLSLE 830
M S G+L++L+ +E RG G+ L +E
Sbjct: 780 VKIMSISAQGFGRLKNLEMSMERRG-HGLDELRIE 813
|
|
| TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 1.9e-41, Sum P(3) = 1.9e-41
Identities = 188/710 (26%), Positives = 310/710 (43%)
Query: 141 YVMISKIKEINDRFQEIVTQKDLLD---LKESSAGGSKKAM---QRLPTTSLVNEAKVYG 194
Y ++ I+ + R +I +++ LKE GG+ ++ Q S+ E V G
Sbjct: 106 YSIVDDIRILKRRILDITRKRETYGIGGLKEPQGGGNTSSLRVRQLRRARSVDQEEVVVG 165
Query: 195 RETEKKEIVEXXXXXXXXNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC 254
E + K ++E N F +I I GMGGLGKT LA+ +YN V++ F+ +AWT
Sbjct: 166 LEDDAKILLEKLLDYEEKNR--F-IISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTY 222
Query: 255 VSNDFDVIRLTKTILRCITKQTIDDSDXXXXXXXXXXXX------SRKKFLLVLDDVWNE 308
VS ++ + I+R + + ++ + KK+L+V+DD+W
Sbjct: 223 VSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWER 282
Query: 309 NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV-AIMGTAPAYQLKRLSTDDCLSVFTQHSL 367
W + R L GS++I+TTR + V + G A++L+ L+ ++ +F Q +
Sbjct: 283 EA--WDSLKRALPCNHEGSRVIITTRIKAVAEGVDGRFYAHKLRFLTFEESWELFEQRAF 340
Query: 368 DSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWD-LPED 426
+ ++ L + GK++V KC GLPL L GLL K PS+W DV NS +W L +D
Sbjct: 341 RNIQ-RKDEDLLKTGKEMVQKCRGLPLCIVVLAGLLSRKT-PSEWNDVCNS-LWRRLKDD 397
Query: 427 RCGILPAL-RVSYYYLSPPLKQCFAYCSLLPKDYXXXXXXXXXXXXXXGFLDHEDRDEEK 485
+ P + +S+ L K CF Y S+ P+DY GF+ D +
Sbjct: 398 SIHVAPIVFDLSFKELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQG-DEEMMM 456
Query: 486 EELGHQFFQELCSRSFFEKSSNDTSKFV---MHDLVNDLARWAAGEIYFIMEGTLEVNKQ 542
E++ + +EL RS E + K + +HDL+ D+A + E+ F+ V +
Sbjct: 457 EDVARYYIEELIDRSLLEAVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQH 516
Query: 543 QRIS--RNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRG--YLACSILHQL 598
+ R + H + R Y KR K +R+FL ++ G + +L L
Sbjct: 517 SSTTCRREVVHHQFKR--YSSEKR-----KNKRMRSFLYFGEFDHLVGLDFETLKLLRVL 569
Query: 599 --------LKLQ-QLRVFTVLNLSRTNIRN--LPESITKLYNLHTLLLEDCDRLKTLCAD 647
K+ L L + +I + + I+KL L TL + D ++ D
Sbjct: 570 DFGSLWLPFKINGDLIHLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETI-D 628
Query: 648 IGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTL 707
+ L L H+ N L G + LQTL + + D ++L+ + L++LR L
Sbjct: 629 LRKLTSLRHVIG-NFFG----GLLIGDVANLQTLTS--ISFDSWNKLKP-ELLINLRD-L 679
Query: 708 DISNLENVKHVG-DAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLE 766
IS + K A L+ ++L+VL L S E R +D++ ++LE
Sbjct: 680 GISEMSRSKERRVHVSWASLTKLESLRVLKLATPTEVHLSLESEEAVRSMDVIS--RSLE 737
Query: 767 EFCING--YRGTKFPIWLGDSSLSKLVTLKFQYCG-MCTSLPSVGQLRSL 813
+ G + P L L+ L Y G M S G+LR L
Sbjct: 738 SVTLVGITFEEDPMPFLQKMPRLEDLILLSCNYSGKMSVSEQGFGRLRKL 787
|
|
| TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 205/769 (26%), Positives = 339/769 (44%)
Query: 144 ISK-IKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQRLPTTSLVNEAKVYGRETEKKEI 202
ISK I ++ Q Q+ + D SS ++ + T S +E G E K++
Sbjct: 113 ISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQREMRHTFSRDSENDFVGMEANVKKL 172
Query: 203 VEXXXXXXXXNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262
V +D + ++ + GMGGLGKTTLA+ V+N V+D FD AW VS +F I
Sbjct: 173 V---GYLVEKDD--YQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRI 227
Query: 263 RLTKTILRCIT----KQTIDDSDXXXXXXXXXXXXSRKKFLLVLDDVWNENYNDWVDMSR 318
+ +TIL+ +T K I + K L+VLDD+W E DW D+ +
Sbjct: 228 SVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIWKEE--DW-DLIK 284
Query: 319 PLEAGAPGSKIIVTTRNQEVVAIMG--TAPAYQLKRLSTDDCLSVFTQHSL---DSRDFS 373
P+ G K+++T+R E +A+ G T +++ K LS D ++F ++ D+ +F
Sbjct: 285 PIFPPKKGWKVLLTSRT-ESIAMRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFK 343
Query: 374 SNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWD-LPEDRCG--- 429
++ +E +GKK++ C GL LA K LGGLL K+ DW+ L+ NI + E G
Sbjct: 344 VDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKR-LSENIGSHIVERTSGNNS 402
Query: 430 -ILPALRVSYYYLSPPLKQCFAYCSLLPKDYXXXXXXXXXXXXXXGFLDHEDRDEEK-EE 487
I L VS+ L LK CF Y + P+D+ G + D E +
Sbjct: 403 SIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRD 462
Query: 488 LGHQFFQELCSRSFFEKSSND--TSKFV---MHDLVNDLARWAAGEIYF--IMEGTLEVN 540
G + +EL R+ S D TS+F +HD++ ++ + A E F I+ +
Sbjct: 463 TGDSYIEELVRRNMVI-SERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTS 521
Query: 541 KQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLK 600
Q + + R + + V+R+ + K LR+ + + +R ++ + +K
Sbjct: 522 NPQTLGASRRFVLHNPTTLH-VERYKN--NPK-LRSLVVVYDDIGNRRWMLSGSIFTRVK 577
Query: 601 LQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNS 660
L LRV ++ ++ LP I KL +L L L+D ++ L + + NL+ L +L
Sbjct: 578 L--LRVLDLVQ-AKFKGGKLPSDIGKLIHLRYLSLKDA-KVSHLPSSLRNLVLLIYLDIR 633
Query: 661 NTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGD 720
+ +P N +G R R EL MH + L++SNLE ++ + +
Sbjct: 634 TDFTDIFVP-------------NVFMGM-RELRYLELPRFMHEKTKLELSNLEKLEALEN 679
Query: 721 --AKEAHLS---GKKNLKVLLLRWARNSFDSRVPETET--RVLDMLKPHQNL------EE 767
K + L G L+ L++ + + + + R L+ K +N EE
Sbjct: 680 FSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEE 739
Query: 768 FCINGYRGTK-FPIWLGDSSLSK-------LVTLKFQYCGMCTS-LPSVGQLRSLKHLEV 818
+ + K + + L K L L YC + +P + +L LK L +
Sbjct: 740 RMVLDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSL 799
Query: 819 RGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWI-PRGSSQEI 866
+S R + G FP L L ++ +EWEEWI GS +
Sbjct: 800 DYLSFSGRKMVCSAGG-----FPQLRKLALDEQEEWEEWIVEEGSMSRL 843
|
|
| TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 8.8e-40, Sum P(3) = 8.8e-40
Identities = 175/699 (25%), Positives = 300/699 (42%)
Query: 137 IKFEYVMISKIKEINDRFQEIVTQKD-LLDLKESSAGGSKKAMQRLPTTSLVNEAKVYGR 195
+ +Y +++EIN+R +I +Q + + S G R ++ + + +V G
Sbjct: 105 VPLQYKKSKRLQEINERITKIKSQVEPYFEFITPSNVGRDNGTDRW-SSPVYDHTQVVGL 163
Query: 196 ETEKKEIVEXXXXXXXXNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV 255
E +K++I E ND ++ +GMGGLGKTT+AQ V+ND ++ F+ + W V
Sbjct: 164 EGDKRKIKEWLFRS---NDSQLLIMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWVSV 220
Query: 256 SNDFDVIRLTKTILRCITKQTIDDSDXXXXXXXXXXXXSRKKFLLVLDDVWNENYNDWVD 315
S F ++ ++ILR + ++ D D K++L+V+DDVW++N + W
Sbjct: 221 SQTFTEEQIMRSILRNLGDASVGD-DIGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDK 279
Query: 316 MSRPLEAGAPGSKIIVTTRNQEVVAIMGTAP--AYQLKRLSTDDCLSVFTQHSLDSRDFS 373
+ + L G GS +IVTTR++ V + ++ + LS D+ +F + + D +
Sbjct: 280 IYQGLPRGQGGS-VIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLFCNVAFAANDGT 338
Query: 374 SNK-SLEEIGKKIVIKCNGLPLAAKTLGGLLRGK-HGPSDWEDV---LNSNIWDLPEDRC 428
+ LE++GK+IV KC GLPL K +GGLL K H +W + + +
Sbjct: 339 CERPELEDVGKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRIAEHFQDELRGNTSETD 398
Query: 429 GILPALRVSYYYLSPPLKQCFAYCSLLPKDYXXXXXXXXXXXXXXGFLDHEDRDEEKEEL 488
++ +L++SY L LK C SL P+D GF+ + E
Sbjct: 399 NVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRN-GRSATES 457
Query: 489 GHQFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNKQQRISR- 547
G F L +R E S ++ ++D+ R + +++ K+ S
Sbjct: 458 GEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVR----------DLVIDIAKKDSFSNP 507
Query: 548 ---NLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQL 604
N RHL I G +D K+ + LR +S + L + + + L
Sbjct: 508 EGLNCRHLG-ISGNFDE-KQIKVNHK---LRGVVSTTKTGEVNK-LNSDLAKKFTDCKYL 561
Query: 605 RVFTVL-NLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNS--- 660
RV + ++ + + + I L +L L L + L + +L L L S
Sbjct: 562 RVLDISKSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQ 621
Query: 661 NTISLQEMPLRFGKLTCLQ-TLCNFVVGNDRG-SRLRELKFLMHLRGTL--------DIS 710
N LQ + F KL L T C + +G L +L+ L+ + ++
Sbjct: 622 NLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCKLSEVK 681
Query: 711 NLENVKHVG-------DAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQ 763
NL N++ +G +E L NL L+ + N +DS + T++ + PHQ
Sbjct: 682 NLTNLRKLGLSLTRGDQIEEEELDSLINLSKLM-SISINCYDSYGDDLITKIDALTPPHQ 740
Query: 764 NLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCT 802
L E + Y G P WL L L +Y +C+
Sbjct: 741 -LHELSLQFYPGKSSPSWLSPHKLPML-----RYMSICS 773
|
|
| TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 205/793 (25%), Positives = 330/793 (41%)
Query: 145 SKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQRLPTTSLVNEAKVYGRETEKKEIVE 204
++I ++ Q Q+ ++D G ++ R T S E+ G E K++V
Sbjct: 117 TRISDVIRDMQSFGVQQAIVDGGYMQPQGDRQREMR-QTFSKDYESDFVGLEVNVKKLV- 174
Query: 205 XXXXXXXXNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRL 264
++ V+ I GMGGLGKTTLA+ V+N V+ FD AW CVS +F +
Sbjct: 175 ----GYLVDEENVQVVSITGMGGLGKTTLARQVFNHEDVKHQFDRLAWVCVSQEFTRKNV 230
Query: 265 TKTILRCIT----KQTIDDSDXXXXXXXXXXXXSRKKFLLVLDDVWNENYNDWVDMSRPL 320
+ IL+ +T K I + K L+V DD+W + DW D+ +P+
Sbjct: 231 WQMILQNLTSREKKDEILQMEEAELHDKLFQLLETSKSLIVFDDIWKDE--DW-DLIKPI 287
Query: 321 EAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKR--LSTDDCLSVFTQHSLDSRDFSSNK-- 376
G K+++T++N E VA+ G K L+ +D ++F + + +D S +K
Sbjct: 288 FPPNKGWKVLLTSQN-ESVAVRGDIKYLNFKPECLAIEDSWTLFQRIAFPKKDASESKVD 346
Query: 377 -SLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIW-DL----PEDRCGI 430
+E++GK+++ C GLPLA K LGGLL K+ DWE L+ NI D+ + I
Sbjct: 347 EEMEDMGKQMLKHCGGLPLAIKVLGGLLAAKYTMHDWER-LSVNIGSDIVGRTSSNNSSI 405
Query: 431 LPALRVSYYYLSPPLKQCFAYCSLLPKDYXXXXXXXXXXXXXXGFLDHED--RDEEKEEL 488
L +S+ L LK CF Y + P+D+ G ED E +++
Sbjct: 406 YHVLSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDV 465
Query: 489 GHQFFQELCSRSF--FEKSSNDTSKFV---MHDLVNDLARWAAGEIYFIMEGTLEVNKQQ 543
G + +EL R+ +E+ + S+F +HD++ ++ + A E F+ V
Sbjct: 466 GQSYLEELVRRNMIIWERDAT-ASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTS 524
Query: 544 RISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQ 603
+ N + S R +R Y T L + N+ + +L L ++
Sbjct: 525 SSTGNSQ--SPCRS-----RRLV--YQCP---TTLHVERDINNPKLRSLVVLWHDLWVEN 572
Query: 604 LRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTI 663
++ L S T + KL + L D + +K L IGNLI L +L +
Sbjct: 573 WKL---LGTSFTRL--------KLLRVLDLFYVDFEGMK-LPFGIGNLIHLRYLSLQDA- 619
Query: 664 SLQEMPLRFGKLTCLQTL-----CNFVVGNDRGSRLRELKFL-----MHLRGTLDISNLE 713
+ +P G L L L F+ D R+ EL++L MH + L + NL
Sbjct: 620 KVSHLPSSLGNLMLLIYLNLDVDTEFIFVPDVFMRMHELRYLKLPLHMHKKTRLSLRNLV 679
Query: 714 NVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGY 773
++ + H S K + L +RV TET + + +NLE I G
Sbjct: 680 KLETLVYFSTWHSSSKDLCGMTRLMTLAIRL-TRVTSTET-LSASISGLRNLEYLYIVGT 737
Query: 774 RGTKFP--------IWLGDSSLSKLVTLKFQYCGMCT--SLPSVG-QLRSLKHLE-VRGM 821
K I L L + + + T L G + + LE + +
Sbjct: 738 HSKKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHL 797
Query: 822 SGVKRLSLEFYGND---SPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHIS 878
GV L + G S FP L+ L + +WEEW+ S P L L I
Sbjct: 798 KGVILLKGSYCGRRMVCSGGGFPQLKKLEIVGLNKWEEWLVEEGSM-----PLLETLSIL 852
Query: 879 RCSKLRGTLPERL 891
C +L+ +P+ L
Sbjct: 853 DCEELK-EIPDGL 864
|
|
| TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 9.8e-37, Sum P(3) = 9.8e-37
Identities = 147/534 (27%), Positives = 232/534 (43%)
Query: 145 SKIKEINDRFQEIVTQKDLLDLKESSAG-G---SKKAMQRLPTTSLVNEAKVYGRETEKK 200
S+I+EI R +I +KES G S ++ + V E + G E +
Sbjct: 113 SEIREITSRLSKIAASMLDFGIKESMGREGLSLSDSLREQRQSFPYVVEHNLVGLEQSLE 172
Query: 201 EIVEXXXXXXXXNDGG--FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND 258
++V GG V I GMGGLGKTTLA+ +++ H+V+ HFD AW VS D
Sbjct: 173 KLVNDLVS------GGEKLRVTSICGMGGLGKTTLAKQIFHHHKVRRHFDRFAWVYVSQD 226
Query: 259 FDVIRLTKTILRCIT----KQTIDDSDXXXXXXXXXXXXSRKKFLLVLDDVWNENYNDWV 314
+ + I ++ Q I R K L+VLDD+W ++ D +
Sbjct: 227 CRRRHVWQDIFLNLSYKDENQRILSLRDEQLGEELHRFLKRNKCLIVLDDIWGKDAWDCL 286
Query: 315 DMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPA-YQLKRLSTDDCLSVFTQHSLDSRDFS 373
P E G S+II+TTRN+EV ++ + L+ ++ + + SL R+
Sbjct: 287 KHVFPHETG---SEIILTTRNKEVALYADPRGVLHEPQLLTCEESWELLEKISLSGRENI 343
Query: 374 SN---KSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDV---LNSNIWDLPEDR 427
K +EEIGK+IV++C GLPLA LGGLL K ++W+ V + S + +
Sbjct: 344 EPMLVKKMEEIGKQIVVRCGGLPLAITVLGGLLATKSTWNEWQRVCENIKSYVSNGGSSN 403
Query: 428 CG----ILPALRVSYYYLSPPLKQCFAYCSLLPKDYXXXXXXXXXXXXXXGFL---DHED 480
+ L +SY YL P +KQCF Y + P+DY G + H +
Sbjct: 404 GSKNMLVADVLCLSYEYLPPHVKQCFLYFAHYPEDYEVHVGTLVSYCIAEGMVMPVKHTE 463
Query: 481 RDEEKEELGHQFFQELCSRSFFEKSSND-TSKFVMHDLVNDLARWAAGEIYFIMEGTLEV 539
E++G + +EL RS D + VM ++DL R E L+
Sbjct: 464 AGTTVEDVGQDYLEELVKRSMVMVGRRDIVTSEVMTCRMHDLMR----------EVCLQK 513
Query: 540 NKQQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLL 599
KQ+ + + + D + F R +S+ L + + S L Q+
Sbjct: 514 AKQESFVQVIDSR-----DQDEAEAFISLSTNTSRR--ISVQLHGGAEEHHIKS-LSQV- 564
Query: 600 KLQQLRVFTVLNLSRTNIRN--LPESITKLYNLHTLLLEDCDRLKTLCADIGNL 651
+++++ VL+L I LP+ + L +L L + +K L + IGNL
Sbjct: 565 SFRKMKLLRVLDLEGAQIEGGKLPDDVGDLIHLRNLSVR-LTNVKELTSSIGNL 617
|
|
| TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 196/793 (24%), Positives = 324/793 (40%)
Query: 145 SKIKEINDRFQEIVTQKDLLDLKESSAGGSKKA----MQRLPTTSLVN--EAKVYGRETE 198
S I+ I R +++ + L +++ G + +QR + N E+ + G E
Sbjct: 110 SDIEGITKRISKVIGEMQSLGIQQQIIDGGRSLSLQDIQREIRQTFPNSSESDLVGVEQS 169
Query: 199 KKEIVEXXXXXXXXNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND 258
+E+V V+ I GMGG+GKTTLA+ +++ V+ HFD AW CVS
Sbjct: 170 VEELVGPMVEID-----NIQVVSISGMGGIGKTTLARQIFHHDLVRRHFDGFAWVCVSQQ 224
Query: 259 FDVIRLTKTILRCITKQT--IDDSDXXXXXXXXXXXXSRKKFLLVLDDVWNENYNDWVDM 316
F + + IL+ + I D ++L+VLDDVW E DW D
Sbjct: 225 FTQKHVWQRILQELRPHDGEILQMDEYTIQGKLFQLLETGRYLVVLDDVWKEE--DW-DR 281
Query: 317 SRPLEAGAPGSKIIVTTRNQEV-VAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSN 375
+ + G K+++T+RN+ V + T +++ + L+ + +F + + R+ +
Sbjct: 282 IKEVFPRKRGWKMLLTSRNEGVGLHADPTCLSFRARILNPKESWKLF-ERIVPRRNETEY 340
Query: 376 KSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIW-DLPEDRC------ 428
+ +E IGK++V C GLPLA K LGGLL KH S+W+ V + NI + C
Sbjct: 341 EEMEAIGKEMVTYCGGLPLAVKVLGGLLANKHTASEWKRV-SENIGAQIVGKSCLDDNSL 399
Query: 429 -GILPALRVSYYYLSPPLKQCFAYCSLLPKDYXXXXXXXXXXXXXXGFLDHEDRDEEKEE 487
+ L +SY L LK CF Y + P+DY G D +
Sbjct: 400 NSVYRILSLSYEDLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIYDGLTILDS--- 456
Query: 488 LGHQFFQELCSRSFF--EKSSNDTS-KFV-MHDLVNDLARWAAGEIYFIMEGTLEVNKQQ 543
G + +EL R+ EKS+ K MHD++ ++ A +E L++ K
Sbjct: 457 -GEDYLEELVRRNLVIAEKSNLSWRLKLCQMHDMMREVCISKAK-----VENFLQIIKVP 510
Query: 544 RISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQ 603
+ + S R V F+ + + + S+++ G + + Q
Sbjct: 511 TSTSTIIAQSPSRSRRLTVHSGKAFHILGHKKKVRSLLVL----GLKEDLWIQSASRFQS 566
Query: 604 LRVFTVLNLSRTNIRN--LPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSN 661
L + VL+LS LP SI L +L L L + L + I NL + +L
Sbjct: 567 LPLLRVLDLSSVKFEGGKLPSSIGGLIHLRFLSLHQAV-VSHLPSTIRNLKLMLYLNLHV 625
Query: 662 TISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDA 721
I + P+ + L+ + R L MH + L++ +L N++++
Sbjct: 626 AIGV---PVHVPNV--LKEMLEL--------RYLSLPLDMHDKTKLELGDLVNLEYLWCF 672
Query: 722 KEAHLSGKKNLKVLLLRWARNSFDSRVP-ETETRVLDMLKPHQNLE-------------- 766
H S L++ LR+ SF R E + L + + L
Sbjct: 673 STQHSSVTDLLRMTKLRFFGVSFSERCTFENLSSSLRQFRKLETLSFIYSRKTYMVDYVG 732
Query: 767 EFCINGYRGTKFPIWLGDSSLSK-------LVTLKFQYCGMCTS-LPSVGQLRSLKHLEV 818
EF ++ K + + S + + + +C M +P + +L LK +E+
Sbjct: 733 EFVLDFIHLKKLSLGVHLSKIPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVEL 792
Query: 819 RGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHIS 878
R + + R + G FP L L + E EEWI S P LR+L I
Sbjct: 793 RRKAFIGRRMVCSKGG-----FPQLRALQISEQSELEEWIVEEGSM-----PCLRDLIIH 842
Query: 879 RCSKLRGTLPERL 891
C KL LP+ L
Sbjct: 843 SCEKLE-ELPDGL 854
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1416 | |||
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 5e-74 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-09 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-07 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 9e-07 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-06 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 4e-06 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-04 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 3e-04 | |
| pfam13191 | 154 | pfam13191, AAA_16, AAA ATPase domain | 3e-04 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 5e-74
Identities = 114/291 (39%), Positives = 160/291 (54%), Gaps = 12/291 (4%)
Query: 195 RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC 254
RE + ++E LL V+ I+GMGG+GKTTLA+ +YND V HFD AW
Sbjct: 1 REDMIEALIEKLLEMS----DNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVV 56
Query: 255 VSNDFDVIRLTKTILRCITKQTIDDSDLNL--LQEELNKQLSRKKFLLVLDDVWNENYND 312
VS + RL K IL+ + D + N L ++ + L RK+FLLVLDDVW + ND
Sbjct: 57 VSKTYTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWEK--ND 114
Query: 313 WVDMSRPLEAGAPGSKIIVTTRNQEVV-AIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRD 371
W + P G GS++IVTTR++ V + GT+ ++++ L ++ +F+ +
Sbjct: 115 WDKIGVPFPDGENGSRVIVTTRSESVAGRMGGTSKPHEVESLEPEESWELFSNKVFEKEL 174
Query: 372 FSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPEDRC--G 429
LEE+ K+IV KC GLPLA K LGGLL K +WE VL +L
Sbjct: 175 -PPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNE 233
Query: 430 ILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHED 480
+L L +SY L LK+CF Y +L P+DY +E++I LWIAEGF+ D
Sbjct: 234 VLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVIPSD 284
|
Length = 285 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-09
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 42/242 (17%)
Query: 1133 LKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNL 1192
L+ +D+ L+ I + L+ T+LE + + +C +L LPS + L +L+ + + C NL
Sbjct: 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694
Query: 1193 VSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPT 1252
G + L RL +S C RL++ P N++ L + D + P+
Sbjct: 695 EILPTG-INLKSLYRLNLSGCSRLKSFPDISTNISWL-----------DLDETAIEEFPS 742
Query: 1253 NLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTT 1312
NL N+D + ++ ++ R Q + L T
Sbjct: 743 NLRLENLDEL-----------------ILCEMKSEKLWERVQPLTP----------LMTM 775
Query: 1313 LPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPEKGLPASLLRLEIS 1372
L +LT L ++D+P+L L SSI L L++ NC L+ P SL L++S
Sbjct: 776 LS--PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS 833
Query: 1373 GC 1374
GC
Sbjct: 834 GC 835
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-07
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 29/221 (13%)
Query: 1015 LRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYI-TGVQLPPSLKLLLIFDCD 1073
LR I + + LK +P+ M ++LE L ++ CSSL + + +Q L+ L + C+
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMA---TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692
Query: 1074 SIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL--FSKNGLPATLESLEVGNLPQ 1131
++ L ++S L L + C L S N L+ + P
Sbjct: 693 NLEILPTGINLKS----------LYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS 742
Query: 1132 SLKFLDVWEC----PKLESIAERLNNNT--------SLEVIDIGNCENLKILPSGLHNLC 1179
+L+ ++ E K E + ER+ T SL + + + +L LPS + NL
Sbjct: 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH 802
Query: 1180 QLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALP 1220
+L+ + I C NL + G+ L L++S C RL P
Sbjct: 803 KLEHLEIENCINLETLPT-GINLESLESLDLSGCSRLRTFP 842
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 9e-07
Identities = 69/258 (26%), Positives = 104/258 (40%), Gaps = 47/258 (18%)
Query: 967 KLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVA---------------L 1011
KLE L +S C+ L LP + NL SL + + CS L SFP+++
Sbjct: 682 KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEF 740
Query: 1012 PSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFD 1071
PS LRL ++L E +CE S + + L + L PSL L + D
Sbjct: 741 PSNLRL---------ENLDELILCEMKSEKLWERVQPLTPLMTM----LSPSLTRLFLSD 787
Query: 1072 CDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQ 1131
S+ L SS LEHL I C +L L + L +LESL++ +
Sbjct: 788 IPSLVEL---------PSSIQNLHKLEHLEIENCINLETLPTGINLE-SLESLDLSGCSR 837
Query: 1132 SLKFLDV--------WECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQR 1183
F D+ +E + + ++L +D+ C NL+ + + L L+
Sbjct: 838 LRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897
Query: 1184 ISIWCCGNLVSFSEGGLP 1201
+ CG L S G P
Sbjct: 898 VDFSDCGALTEASWNGSP 915
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-06
Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 55/282 (19%)
Query: 963 DLS--CKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPE-VALPSKLRLIT 1019
DLS LE L LS C LV LP S+ L+ L ++ + C +L P + L S RL
Sbjct: 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL-N 710
Query: 1020 IWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLT 1079
+ C LKS P + ++++ L++ + + + ++L +L+L C+ +++
Sbjct: 711 LSGCSRLKSFP-----DISTNISWLDLDETAIEEFPSNLRLENLDELIL---CE-MKSEK 761
Query: 1080 VEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKN-----GLPATLESLEVGNLPQSLK 1134
+ E +Q L L+ PSLT LF + LP+++++L L+
Sbjct: 762 LWERVQ----------PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL------HKLE 805
Query: 1135 FLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPS--------------------G 1174
L++ C LE++ +N SLE +D+ C L+ P
Sbjct: 806 HLEIENCINLETLPTGINLE-SLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW 864
Query: 1175 LHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERL 1216
+ L + + C NL S L ++ S+C L
Sbjct: 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-06
Identities = 69/276 (25%), Positives = 118/276 (42%), Gaps = 64/276 (23%)
Query: 1011 LPSKLRLITIWDCEALKSLPEAW---------MCETN-----------SSLEILNIAGCS 1050
LP KLRL+ WD L+ +P + M + + L +++ G
Sbjct: 587 LPPKLRLLR-WDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645
Query: 1051 SLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTC 1110
+L I + + +L+ L + DC S+ ++ SS +Y + L E L + RC +L
Sbjct: 646 NLKEIPDLSMATNLETLKLSDCSSL--------VELPSSIQYLNKL-EDLDMSRCENL-- 694
Query: 1111 LFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKI 1170
E L G +SL L++ C +L+S + +T++ +D+ ++
Sbjct: 695 -----------EILPTGINLKSLYRLNLSGCSRLKSF---PDISTNISWLDLDET-AIEE 739
Query: 1171 LPSGLH-------NLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGL 1223
PS L LC+++ +W ++ L LTRL +S+ L LP +
Sbjct: 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS-PSLTRLFLSDIPSLVELPSSI 798
Query: 1224 RNLTCLQHLTIGDVLSPERDPEDEDRLPT--NLHSL 1257
+NL L+HL I + ++ E LPT NL SL
Sbjct: 799 QNLHKLEHLEIENCINLE-------TLPTGINLESL 827
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 222 IIGMGGLGKTTLAQLVYN--DHRVQDH-FDLKAWTCVS---------NDFDV-IRLTKTI 268
I G G+GKTT+A+ +++ + Q F +A+ S +D+++ + L +
Sbjct: 212 IWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAF 271
Query: 269 LRCI-TKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGS 327
L I K+ I L ++E L +K L+ +DD+ +++ D ++ + GS
Sbjct: 272 LSEILDKKDIKIYHLGAMEERLK----HRKVLIFIDDLDDQDVLD--ALAGQTQWFGSGS 325
Query: 328 KIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVI 387
+IIV T+++ + G Y++ S + L +F + + + S E+ ++ +
Sbjct: 326 RIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAF--KKNSPPDGFMELASEVAL 383
Query: 388 KCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPEDRCG----ILPALRVSY 438
+ LPL LG LRG+ DW D+ LP R G I LRVSY
Sbjct: 384 RAGNLPLGLNVLGSYLRGRD-KEDWMDM-------LPRLRNGLDGKIEKTLRVSY 430
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-04
Identities = 85/343 (24%), Positives = 124/343 (36%), Gaps = 49/343 (14%)
Query: 807 VGQLRSLKHLEVRGMSGVKRL-SLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQE 865
V L L+++++RG +K + L N LETL D E
Sbjct: 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATN--------LETLKLSDCSSLVEL-----PSS 676
Query: 866 IEGFPKLRELHISRCSKLRGTLPE--RLPALEMFVIQSCEELVVSVMSLPALCKFKIDGC 923
I+ KL +L +SRC L LP L +L + C L S + +
Sbjct: 677 IQYLNKLEDLDMSRCENLE-ILPTGINLKSLYRLNLSGCSRLK-SFPDISTNISWLDLDE 734
Query: 924 KKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCD-LSCKLEYLGLSYCQGLVTL 982
+ + L + + C + E Q L LS L L LS LV L
Sbjct: 735 TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL 794
Query: 983 PQSLLNLSSLREIYIRSCSSLVSFPE-VALPSKLRLITIWDCEALKSLPE---------- 1031
P S+ NL L + I +C +L + P + L S L + C L++ P+
Sbjct: 795 PSSIQNLHKLEHLEIENCINLETLPTGINLESLESL-DLSGCSRLRTFPDISTNISDLNL 853
Query: 1032 --------AWMCETNSSLEILNIAGCSSLTYITGVQLPPS-LKLLLIFDCDSIRTLTVEE 1082
W E S+L L++ GC++L V L S LK L D LT
Sbjct: 854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNL---QRVSLNISKLKHLETVDFSDCGALTEAS 910
Query: 1083 GIQSSSS-SRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESL 1124
S S + T ++ L PS C+ N E+L
Sbjct: 911 WNGSPSEVAMATDNIHSKL-----PSTVCINFINCFNLDQEAL 948
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 31/137 (22%)
Query: 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLK 250
++ GRE E + +++ L R GG + + G G GKT+L + + +
Sbjct: 1 RLVGREEELERLLDALRR---ARSGGPPSVLLTGPSGTGKTSLL------RELLEGLLVA 51
Query: 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNL---------------------LQEEL 289
A C + + LR + +Q + + L L E L
Sbjct: 52 AGKCDQAERNPPYAFSQALRELLRQLLRELAAELLLLREALLAALGAELIEGLQDLVELL 111
Query: 290 NKQLSRKKFL-LVLDDV 305
+ L+R + L LVLDD+
Sbjct: 112 ERLLARARPLVLVLDDL 128
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1416 | |||
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.92 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.91 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.91 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.9 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.88 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.87 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.87 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.86 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.85 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.57 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.52 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.49 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.36 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.36 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.31 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.31 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.31 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.24 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.23 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.17 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.11 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.06 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.06 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.04 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 99.01 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 98.96 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.94 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 98.88 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.86 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 98.86 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.7 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.63 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 98.59 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.58 | |
| COG3899 | 849 | Predicted ATPase [General function prediction only | 98.55 | |
| COG3903 | 414 | Predicted ATPase [General function prediction only | 98.55 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.5 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.47 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 98.46 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 98.44 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.44 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.44 | |
| PTZ00202 | 550 | tuzin; Provisional | 98.44 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 98.43 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 98.43 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 98.41 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.4 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.39 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 98.38 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 98.37 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 98.36 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 98.34 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 98.33 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.33 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 98.32 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 98.32 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 98.31 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.31 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 98.31 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 98.25 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 98.25 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.25 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 98.24 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 98.24 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.23 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.22 | |
| PRK08727 | 233 | hypothetical protein; Validated | 98.21 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.2 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 98.19 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 98.18 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 98.18 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.17 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 98.15 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 98.15 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 98.15 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.14 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 98.14 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 98.13 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.13 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 98.12 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 98.12 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 98.12 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 98.12 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 98.11 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.11 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 98.11 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.1 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 98.09 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 98.06 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 98.05 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.04 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 98.04 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.02 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 98.02 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.02 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.02 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 98.0 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 98.0 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 98.0 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 98.0 | |
| PRK09087 | 226 | hypothetical protein; Validated | 98.0 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 98.0 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.98 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.97 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 97.96 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.95 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 97.93 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.92 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.92 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 97.9 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 97.88 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.88 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 97.87 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 97.86 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 97.86 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.85 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 97.84 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 97.84 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 97.83 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 97.81 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 97.81 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 97.79 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 97.79 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 97.76 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 97.75 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 97.74 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 97.74 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 97.72 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 97.71 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 97.71 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 97.69 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 97.66 | |
| PRK06620 | 214 | hypothetical protein; Validated | 97.66 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 97.65 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 97.63 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 97.61 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.59 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.57 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 97.56 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 97.56 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 97.55 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 97.52 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 97.51 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 97.49 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 97.46 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.44 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 97.44 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 97.43 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 97.42 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.42 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 97.41 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 97.38 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 97.37 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.34 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.3 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.29 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 97.25 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 97.22 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 97.2 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.18 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.17 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 97.16 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 97.16 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 97.16 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 97.15 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 97.12 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 97.11 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 97.09 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 97.08 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 97.08 | |
| PRK08116 | 268 | hypothetical protein; Validated | 97.07 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 97.04 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 97.02 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 96.98 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 96.96 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 96.96 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.89 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.88 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 96.87 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 96.86 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 96.86 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 96.84 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 96.83 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 96.8 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 96.77 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 96.72 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 96.7 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 96.7 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 96.69 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 96.66 | |
| PRK08181 | 269 | transposase; Validated | 96.64 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 96.63 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 96.63 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 96.61 | |
| PRK12377 | 248 | putative replication protein; Provisional | 96.61 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 96.57 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 96.55 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 96.55 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 96.54 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 96.53 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 96.51 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 96.5 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.5 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 96.43 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 96.42 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 96.42 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 96.41 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 96.36 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 96.36 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 96.36 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 96.34 | |
| PRK06526 | 254 | transposase; Provisional | 96.34 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 96.26 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 96.25 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 96.23 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 96.21 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 96.2 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.19 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 96.19 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 96.16 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 96.15 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 96.13 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 96.08 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 96.08 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.07 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 96.07 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 96.06 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 96.05 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.03 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 96.01 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 95.99 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.97 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 95.97 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 95.96 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.93 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 95.93 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 95.91 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 95.9 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 95.9 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 95.9 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 95.9 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 95.89 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 95.89 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.88 | |
| cd01133 | 274 | F1-ATPase_beta F1 ATP synthase beta subunit, nucle | 95.84 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.84 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 95.83 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 95.81 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 95.81 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 95.79 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 95.77 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 95.75 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 95.75 | |
| PRK06696 | 223 | uridine kinase; Validated | 95.72 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 95.72 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.7 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 95.66 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 95.65 | |
| PTZ00494 | 664 | tuzin-like protein; Provisional | 95.62 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 95.6 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 95.59 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 95.58 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 95.56 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.52 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 95.51 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 95.51 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 95.5 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 95.5 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.48 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 95.46 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 95.43 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 95.41 | |
| PHA02244 | 383 | ATPase-like protein | 95.36 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 95.3 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 95.26 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 95.26 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 95.25 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 95.24 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 95.23 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 95.23 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.23 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 95.22 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 95.21 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 95.21 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 95.14 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 95.11 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 95.09 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 95.08 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 95.06 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 95.05 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 95.04 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 95.03 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.02 | |
| COG0468 | 279 | RecA RecA/RadA recombinase [DNA replication, recom | 95.02 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 95.02 | |
| PLN03186 | 342 | DNA repair protein RAD51 homolog; Provisional | 95.01 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 95.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 94.97 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 94.96 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 94.96 | |
| TIGR02239 | 316 | recomb_RAD51 DNA repair protein RAD51. This eukary | 94.95 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 94.93 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 94.93 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 94.9 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 94.9 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 94.82 | |
| COG1102 | 179 | Cmk Cytidylate kinase [Nucleotide transport and me | 94.79 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 94.75 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 94.73 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 94.72 | |
| PF00485 | 194 | PRK: Phosphoribulokinase / Uridine kinase family; | 94.72 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 94.71 | |
| COG0572 | 218 | Udk Uridine kinase [Nucleotide transport and metab | 94.7 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 94.69 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 94.68 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 94.66 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 94.65 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 94.64 | |
| PRK13695 | 174 | putative NTPase; Provisional | 94.63 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 94.62 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 94.61 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 94.59 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 94.55 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 94.49 | |
| PF00154 | 322 | RecA: recA bacterial DNA recombination protein; In | 94.48 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 94.47 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 94.47 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 94.45 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 94.44 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 94.41 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 94.41 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 94.33 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 94.31 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.25 | |
| PF00006 | 215 | ATP-synt_ab: ATP synthase alpha/beta family, nucle | 94.21 | |
| PRK13948 | 182 | shikimate kinase; Provisional | 94.16 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 94.15 | |
| PRK07667 | 193 | uridine kinase; Provisional | 94.14 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 94.13 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 94.11 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 94.1 | |
| PF08298 | 358 | AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi | 94.1 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 94.08 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 94.07 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 94.05 | |
| PF01583 | 156 | APS_kinase: Adenylylsulphate kinase; InterPro: IPR | 94.04 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 94.03 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.03 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 93.99 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 93.95 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 93.94 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 93.93 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 93.93 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 93.88 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 93.8 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 93.79 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 93.75 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 93.74 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 93.72 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 93.71 | |
| cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) cat | 93.71 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 93.69 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.68 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 93.66 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 93.62 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.62 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 93.61 | |
| PF08433 | 270 | KTI12: Chromatin associated protein KTI12 ; InterP | 93.6 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 93.6 | |
| PTZ00301 | 210 | uridine kinase; Provisional | 93.58 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 93.58 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 93.5 | |
| PRK08972 | 444 | fliI flagellum-specific ATP synthase; Validated | 93.39 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 93.39 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 93.37 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 93.37 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 93.31 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 93.29 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 93.27 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 93.27 | |
| PF12061 | 402 | DUF3542: Protein of unknown function (DUF3542); In | 93.26 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 93.23 | |
| COG1428 | 216 | Deoxynucleoside kinases [Nucleotide transport and | 93.21 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 93.18 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 93.17 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 93.13 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 93.13 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 93.0 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 92.99 | |
| PRK09280 | 463 | F0F1 ATP synthase subunit beta; Validated | 92.98 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 92.97 | |
| PRK12597 | 461 | F0F1 ATP synthase subunit beta; Provisional | 92.97 | |
| PRK09519 | 790 | recA DNA recombination protein RecA; Reviewed | 92.94 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 92.92 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 92.91 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 92.91 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 92.86 | |
| PRK03839 | 180 | putative kinase; Provisional | 92.83 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 92.8 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 92.8 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 92.8 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 92.78 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.76 | |
| PRK04040 | 188 | adenylate kinase; Provisional | 92.74 | |
| cd01135 | 276 | V_A-ATPase_B V/A-type ATP synthase (non-catalytic) | 92.73 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 92.71 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 92.7 | |
| PTZ00185 | 574 | ATPase alpha subunit; Provisional | 92.68 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 92.67 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 92.63 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 92.63 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 92.62 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 92.61 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 92.6 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 92.59 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 92.59 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 92.55 | |
| PRK12678 | 672 | transcription termination factor Rho; Provisional | 92.54 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 92.53 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 92.46 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 92.45 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 92.44 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 92.4 | |
| PF13479 | 213 | AAA_24: AAA domain | 92.37 | |
| TIGR03575 | 340 | selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti | 92.35 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 92.35 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 92.32 | |
| PRK15453 | 290 | phosphoribulokinase; Provisional | 92.28 | |
| PRK06217 | 183 | hypothetical protein; Validated | 92.27 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 92.26 | |
| cd01134 | 369 | V_A-ATPase_A V/A-type ATP synthase catalytic subun | 92.22 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 92.22 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 92.21 | |
| PRK08927 | 442 | fliI flagellum-specific ATP synthase; Validated | 92.21 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 92.21 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 92.21 | |
| KOG3928 | 461 | consensus Mitochondrial ribosome small subunit com | 92.2 | |
| cd02024 | 187 | NRK1 Nicotinamide riboside kinase (NRK) is an enzy | 92.14 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 92.13 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 92.13 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 92.11 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.11 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 92.05 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 92.03 | |
| TIGR03305 | 449 | alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit | 92.03 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 92.0 | |
| COG2019 | 189 | AdkA Archaeal adenylate kinase [Nucleotide transpo | 91.95 | |
| cd01132 | 274 | F1_ATPase_alpha F1 ATP synthase alpha, central dom | 91.92 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 91.9 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 91.89 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 91.85 | |
| PLN02348 | 395 | phosphoribulokinase | 91.84 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 91.81 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 91.8 | |
| COG5635 | 824 | Predicted NTPase (NACHT family) [Signal transducti | 91.79 | |
| PF05659 | 147 | RPW8: Arabidopsis broad-spectrum mildew resistance | 91.79 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 91.74 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 91.67 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 91.66 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 91.66 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 91.65 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 91.64 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 91.63 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 91.62 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 91.61 | |
| TIGR01040 | 466 | V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th | 91.6 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 91.59 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 91.57 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 91.56 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 91.56 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 91.56 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 91.54 | |
| cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_ | 91.52 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 91.52 | |
| cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). | 91.48 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 91.47 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 91.41 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 91.4 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 91.38 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 91.36 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 91.36 | |
| COG0529 | 197 | CysC Adenylylsulfate kinase and related kinases [I | 91.28 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 91.27 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 91.22 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 91.21 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 91.21 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 91.16 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 91.15 | |
| COG0003 | 322 | ArsA Predicted ATPase involved in chromosome parti | 91.15 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 91.15 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 91.13 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 91.13 | |
| TIGR00041 | 195 | DTMP_kinase thymidylate kinase. Function: phosphor | 91.11 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 91.08 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-81 Score=773.81 Aligned_cols=793 Identities=29% Similarity=0.415 Sum_probs=578.7
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCccccc
Q 000568 26 QFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRTDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAH 105 (1416)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~~r~~ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~ 105 (1416)
.++....++++.+..|++.|..++++++||++++.....+..|...+++++|++||.++.+.......+..+. .
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~-l----- 91 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDL-L----- 91 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-h-----
Confidence 3455567888999999999999999999999999888899999999999999999999999988766543210 0
Q ss_pred CCcccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhccccccccccc--CCCCccccccCCC
Q 000568 106 DHDQTSSSRRSTTTKFRKLIPTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKDLLDLKESS--AGGSKKAMQRLPT 183 (1416)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~ 183 (1416)
......++.. |.. .++++.+..+..+.+++..+......++..... .+.........++
T Consensus 92 ----------~~~~~~~~~~--c~~-------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~ 152 (889)
T KOG4658|consen 92 ----------STRSVERQRL--CLC-------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVET 152 (889)
T ss_pred ----------hhhHHHHHHH--hhh-------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhccc
Confidence 0000011111 221 234455555555555555555554444432211 1100111112233
Q ss_pred cccccCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc-cccccCcEEEEEecCCcCHH
Q 000568 184 TSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR-VQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 184 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~ 262 (1416)
.+...... ||.++.++++.+.|.+++ ..+++|+||||+||||||++++++.. ++.+|+.++||.||+.++..
T Consensus 153 ~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~ 225 (889)
T KOG4658|consen 153 RPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTR 225 (889)
T ss_pred CCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHH
Confidence 33344444 999999999999998764 38999999999999999999999987 99999999999999999999
Q ss_pred HHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHH
Q 000568 263 RLTKTILRCITKQTID--DSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 340 (1416)
.++++|++.++..... ....++++..+.+.|++|||+||+||||+. .+|+.+..++|....||+|++|||+..|+.
T Consensus 226 ~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~ 303 (889)
T KOG4658|consen 226 KIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCG 303 (889)
T ss_pred hHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence 9999999999875433 333478999999999999999999999998 779999999999989999999999999999
Q ss_pred h-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhc
Q 000568 341 I-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSN 419 (1416)
Q Consensus 341 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~ 419 (1416)
. +++...++++.|+.+|||.||++.||..... ..+.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+..
T Consensus 304 ~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l 382 (889)
T KOG4658|consen 304 RAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVL 382 (889)
T ss_pred ccccCCccccccccCccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccc
Confidence 8 7777899999999999999999999876432 3344899999999999999999999999999999999999999877
Q ss_pred ccC----CCCCccCchhHHHHHHhCCChhHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHHH
Q 000568 420 IWD----LPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQE 495 (1416)
Q Consensus 420 ~~~----~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~ 495 (1416)
.+. .+.+.+.+.++|++||+.||+++|.||+|||+||+||.|+++.||.+||||||+++.+.+.+++++|+.|+.+
T Consensus 383 ~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~ 462 (889)
T KOG4658|consen 383 KSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEE 462 (889)
T ss_pred cccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHH
Confidence 555 2334568999999999999999999999999999999999999999999999999877788999999999999
Q ss_pred HHhCCcccccc--CCCCceEehHHHHHHHHHhcc-----CceEEeeCc--ccccccccccCCeeEEEeEccccccccccc
Q 000568 496 LCSRSFFEKSS--NDTSKFVMHDLVNDLARWAAG-----EIYFIMEGT--LEVNKQQRISRNLRHLSYIRGEYDGVKRFA 566 (1416)
Q Consensus 496 L~~~sll~~~~--~~~~~~~mHdlv~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~ 566 (1416)
|++++|+.... ++..+|+|||+||++|.|+|+ ++..++.+. ........-+..+|+++++.+.... ..
T Consensus 463 LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~ 539 (889)
T KOG4658|consen 463 LVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IA 539 (889)
T ss_pred HHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---cc
Confidence 99999999865 456789999999999999999 555555542 1111222334678999998775433 33
Q ss_pred cccCCCcccEEeeeccccCCCCcchhhhhhhcc--cCCCccccceeeccCC-CccccCccccccCcccEEecCCCCchhh
Q 000568 567 GFYDIKYLRTFLSIMLSNNSRGYLACSILHQLL--KLQQLRVFTVLNLSRT-NIRNLPESITKLYNLHTLLLEDCDRLKT 643 (1416)
Q Consensus 567 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~~~~~ 643 (1416)
.-.+++.|++|+...... .+..+. .|..++.|++|||++| .+..||++|++|.+||||+|++ +.+..
T Consensus 540 ~~~~~~~L~tLll~~n~~---------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~ 609 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSD---------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISH 609 (889)
T ss_pred CCCCCCccceEEEeecch---------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccc
Confidence 445667899998775421 122233 3788999999999987 6889999999999999999999 68899
Q ss_pred chHhhcccccCceeecCCccccccccCCcccccCCcccCceEEc-CCCCccccccccccccCcEeEeecCCCcCCccchH
Q 000568 644 LCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVG-NDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAK 722 (1416)
Q Consensus 644 lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~-~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~ 722 (1416)
+|.++++|++|.||++..+..+..+|..+..|++||+|..+... ..+...+.++.+|.+|. .+.+..... ..
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~------~~ 682 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSV------LL 682 (889)
T ss_pred cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchh------Hh
Confidence 99999999999999999988666776667779999999776665 44455666666666665 333321111 00
Q ss_pred HhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccCCCCCCcceEEEeeeCCCCCCc-CcCC---CC-CCCccEEEEec
Q 000568 723 EAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPI-WLGD---SS-LSKLVTLKFQY 797 (1416)
Q Consensus 723 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~---~~-l~~L~~L~L~~ 797 (1416)
...+..+..|.++....... . .........+..+.+|+.|.|.++.+..+.. |... .. ++++.++.+.+
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~---~---~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIE---G---CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhc---c---cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 11122222222211110000 0 0111223456677889999998887754332 3221 11 44666666777
Q ss_pred cCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCC----CCCCCCCccEE-eccCCcccccccccCCcccccCCCcc
Q 000568 798 CGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGND----SPIPFPCLETL-HFEDMKEWEEWIPRGSSQEIEGFPKL 872 (1416)
Q Consensus 798 ~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~----~~~~f~~L~~L-~l~~~~~l~~~~~~~~~~~~~~l~~L 872 (1416)
|.....+.+....|+|+.|.+..|..++.+-....... ...+|++++.+ .+.+...+........ .+++|
T Consensus 757 ~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l-----~~~~l 831 (889)
T KOG4658|consen 757 CHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL-----SFLKL 831 (889)
T ss_pred cccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc-----Cccch
Confidence 76655665666778999999988877766533211110 02345555555 3444444333322211 23445
Q ss_pred cEEeecCCcCcc
Q 000568 873 RELHISRCSKLR 884 (1416)
Q Consensus 873 ~~L~l~~c~~L~ 884 (1416)
+.+.+..||++.
T Consensus 832 ~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 832 EELIVEECPKLG 843 (889)
T ss_pred hheehhcCcccc
Confidence 666666665554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=629.36 Aligned_cols=704 Identities=22% Similarity=0.332 Sum_probs=446.7
Q ss_pred cCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe---cCC------
Q 000568 188 NEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV---SND------ 258 (1416)
Q Consensus 188 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~------ 258 (1416)
+...+|||+++++++..+|... .+++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 3457999999999999988532 34689999999999999999999998 56778988888742 111
Q ss_pred -----cC-HHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEE
Q 000568 259 -----FD-VIRLTKTILRCITKQTI-DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV 331 (1416)
Q Consensus 259 -----~~-~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv 331 (1416)
+. ...++++++.++..... .... ...+++.++++|+||||||||+. ..|+.+.....+.++||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 01 12344555555443221 1111 14577889999999999999886 678888776666778999999
Q ss_pred EccchHHHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcch
Q 000568 332 TTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSD 411 (1416)
Q Consensus 332 TtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~ 411 (1416)
|||+++++..++...+|+++.|++++||+||+++||+... .++++.+++++|+++|+|+|||++++|++|+++ +.++
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~ 406 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKED 406 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHH
Confidence 9999999988777789999999999999999999997643 356789999999999999999999999999987 5789
Q ss_pred HHHHHhhcccCCCCCccCchhHHHHHHhCCCh-hHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 000568 412 WEDVLNSNIWDLPEDRCGILPALRVSYYYLSP-PLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGH 490 (1416)
Q Consensus 412 w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~ 490 (1416)
|+.++++..+.. ...|.++|++||+.|++ ..|.||+++|+|+.+..+ ..+..|+|.+.+.. +
T Consensus 407 W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~ 469 (1153)
T PLN03210 407 WMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------N 469 (1153)
T ss_pred HHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------h
Confidence 999998876543 24699999999999987 599999999999988655 34777888776532 2
Q ss_pred HHHHHHHhCCccccccCCCCceEehHHHHHHHHHhccCceEEeeCcccccccccccCCeeEEEeEccccccccccccccC
Q 000568 491 QFFQELCSRSFFEKSSNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNKQQRISRNLRHLSYIRGEYDGVKRFAGFYD 570 (1416)
Q Consensus 491 ~~~~~L~~~sll~~~~~~~~~~~mHdlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~ 570 (1416)
..++.|+++||++... ..+.|||++|+||++++.++.. + +....++.....-.+... .-..
T Consensus 470 ~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~--~-----------~~~r~~l~~~~di~~vl~---~~~g 530 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSN--E-----------PGEREFLVDAKDICDVLE---DNTG 530 (1153)
T ss_pred hChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcC--C-----------CCcceeEeCHHHHHHHHH---hCcc
Confidence 2388999999998753 5699999999999999876531 0 011111111000000000 0000
Q ss_pred CCcccEEeeeccccCCCCcchhhhhhhcccCCCccccceeeccCCCcccc-CccccccCcccEEecCCCC------chhh
Q 000568 571 IKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNL-PESITKLYNLHTLLLEDCD------RLKT 643 (1416)
Q Consensus 571 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~------~~~~ 643 (1416)
....+.+ .|+++...-..+ +..|.++.+|++|.+..+. ....
T Consensus 531 ~~~v~~i-------------------------------~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~ 579 (1153)
T PLN03210 531 TKKVLGI-------------------------------TLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH 579 (1153)
T ss_pred cceeeEE-------------------------------EeccCccceeeecHHHHhcCccccEEEEecccccccccceee
Confidence 0111111 011111000000 1123333333333332210 0011
Q ss_pred chHhhcccccCceeecCCccccccccCCcccccCCcccCceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHH
Q 000568 644 LCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKE 723 (1416)
Q Consensus 644 lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~ 723 (1416)
+|.++..++
T Consensus 580 lp~~~~~lp----------------------------------------------------------------------- 588 (1153)
T PLN03210 580 LPEGFDYLP----------------------------------------------------------------------- 588 (1153)
T ss_pred cCcchhhcC-----------------------------------------------------------------------
Confidence 222222221
Q ss_pred hhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccCCCCCCcceEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCC
Q 000568 724 AHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTS 803 (1416)
Q Consensus 724 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 803 (1416)
.+|+.|.+.++....+|.++. +.+|+.|++.+|.+...
T Consensus 589 ---------------------------------------~~Lr~L~~~~~~l~~lP~~f~---~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 589 ---------------------------------------PKLRLLRWDKYPLRCMPSNFR---PENLVKLQMQGSKLEKL 626 (1153)
T ss_pred ---------------------------------------cccEEEEecCCCCCCCCCcCC---ccCCcEEECcCcccccc
Confidence 223333333333444444432 34444444444433221
Q ss_pred CCCCCCcCCcceeEecCCCCcEEcCccccCCCCCCCCCCccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCc
Q 000568 804 LPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKL 883 (1416)
Q Consensus 804 l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 883 (1416)
...+..+++|+.|+|+++..+..++ .+..+++|+.|++++|+.+
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip------------------------------------~ls~l~~Le~L~L~~c~~L 670 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP------------------------------------DLSMATNLETLKLSDCSSL 670 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC------------------------------------ccccCCcccEEEecCCCCc
Confidence 1123344444444444332221111 0223445555555555444
Q ss_pred ccCCCCCCCCccEEEEecccCcccccCCCCcceEEEEcCCCCcceecccccccceEEEcCCCCcccchhHHHHHHHhhhh
Q 000568 884 RGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCD 963 (1416)
Q Consensus 884 ~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~ 963 (1416)
. .+|..+.++
T Consensus 671 ~-~lp~si~~L--------------------------------------------------------------------- 680 (1153)
T PLN03210 671 V-ELPSSIQYL--------------------------------------------------------------------- 680 (1153)
T ss_pred c-ccchhhhcc---------------------------------------------------------------------
Confidence 3 333221111
Q ss_pred cccCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCe
Q 000568 964 LSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEI 1043 (1416)
Q Consensus 964 ~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 1043 (1416)
++|+.|++++|..+..+|..+ ++++|+.|++++|..+..+|. .+++|++|++++|. +..+|..+ .+++|+.
T Consensus 681 --~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~-i~~lP~~~---~l~~L~~ 751 (1153)
T PLN03210 681 --NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA-IEEFPSNL---RLENLDE 751 (1153)
T ss_pred --CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc-cccccccc---ccccccc
Confidence 244444444444444444433 455666666666655555553 23566666766666 34455433 4566666
Q ss_pred eEEccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhc
Q 000568 1044 LNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLES 1123 (1416)
Q Consensus 1044 L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~ 1123 (1416)
|.+.+|... .+.. .+ ..+. .
T Consensus 752 L~l~~~~~~-~l~~-----~~-----------------------------------------~~l~-------------~ 771 (1153)
T PLN03210 752 LILCEMKSE-KLWE-----RV-----------------------------------------QPLT-------------P 771 (1153)
T ss_pred ccccccchh-hccc-----cc-----------------------------------------cccc-------------h
Confidence 666654321 0100 00 0000 0
Q ss_pred cccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCC
Q 000568 1124 LEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCA 1203 (1416)
Q Consensus 1124 ~~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 1203 (1416)
.....|++|+.|++++|+....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|..+..+|.. .+
T Consensus 772 -~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~ 846 (1153)
T PLN03210 772 -LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---ST 846 (1153)
T ss_pred -hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---cc
Confidence 011123589999999998888889899999999999999998888888766 7899999999999988887743 36
Q ss_pred CcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCccc
Q 000568 1204 KLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSF 1268 (1416)
Q Consensus 1204 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~ 1268 (1416)
+|+.|++++|.+. .+|.++..+++|+.|++++|.-....+.....+ ++|+.|++++|..+..+
T Consensus 847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L-~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL-KHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc-cCCCeeecCCCcccccc
Confidence 8999999999876 678888999999999999874444445556667 48899999999887654
|
syringae 6; Provisional |
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=384.69 Aligned_cols=278 Identities=37% Similarity=0.645 Sum_probs=226.6
Q ss_pred ehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcC
Q 000568 195 RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 195 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 274 (1416)
||+++++|.++|.... .+.++|+|+||||+||||||++++++.+++.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998742 468999999999999999999999987789999999999999999999999999999987
Q ss_pred CCC---CCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhhCC-CCeeeC
Q 000568 275 QTI---DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGT-APAYQL 350 (1416)
Q Consensus 275 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l 350 (1416)
... ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4567888999999999999999999999987 6888888888877789999999999988877654 578999
Q ss_pred CCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhcccCCCC---Cc
Q 000568 351 KRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPE---DR 427 (1416)
Q Consensus 351 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~ 427 (1416)
++|+.+||++||++.++... ...++..++.+++|+++|+|+||||+++|++|+.+.+..+|+.++++..+.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997654 222344567889999999999999999999997766788999999775544422 34
Q ss_pred cCchhHHHHHHhCCChhHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCC
Q 000568 428 CGILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHE 479 (1416)
Q Consensus 428 ~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 479 (1416)
..+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+++|||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6789999999999999999999999999999999999999999999999753
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=409.45 Aligned_cols=320 Identities=17% Similarity=0.175 Sum_probs=194.4
Q ss_pred CccEEEeecCCCCccccccccCCCCcceEEEccCCCccccC-CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeE
Q 000568 967 KLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILN 1045 (1416)
Q Consensus 967 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 1045 (1416)
+|++|++++|.+.+.+|..+.++++|+.|++++|.+...+| .+..+++|+.|++++|.+.+.+|..+ ..+++|+.|+
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~ 362 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLD 362 (968)
T ss_pred CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEE
Confidence 55555666555555555555566666666666665554444 23445556666666665555555544 4555666666
Q ss_pred EccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccc-cccCCCcchhhcc
Q 000568 1046 IAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNGLPATLESL 1124 (1416)
Q Consensus 1046 l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l-~~~~~~~~~~~~~ 1124 (1416)
+++|.....+ |..+ ..+++|+.+ +..|.+.+.++.
T Consensus 363 Ls~n~l~~~~-----p~~~--------------------------------------~~~~~L~~L~l~~n~l~~~~p~- 398 (968)
T PLN00113 363 LSTNNLTGEI-----PEGL--------------------------------------CSSGNLFKLILFSNSLEGEIPK- 398 (968)
T ss_pred CCCCeeEeeC-----ChhH--------------------------------------hCcCCCCEEECcCCEecccCCH-
Confidence 6554311111 1110 001111111 111111111111
Q ss_pred ccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCC
Q 000568 1125 EVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAK 1204 (1416)
Q Consensus 1125 ~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 1204 (1416)
.+..++ +|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+|... ..++
T Consensus 399 ~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~ 476 (968)
T PLN00113 399 SLGACR-SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKR 476 (968)
T ss_pred HHhCCC-CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-cccc
Confidence 233343 78888888888888788788888888888888888888777777788888888888777666666443 3478
Q ss_pred cceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCc
Q 000568 1205 LTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSL 1284 (1416)
Q Consensus 1205 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L 1284 (1416)
|+.|++++|++.+.+|..+.++++|+.|++++|.+.+..|..+..++ +|++|++++|......+.. +..+++|
T Consensus 477 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~------~~~l~~L 549 (968)
T PLN00113 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK-KLVSLDLSHNQLSGQIPAS------FSEMPVL 549 (968)
T ss_pred ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc-CCCEEECCCCcccccCChh------HhCcccC
Confidence 88888888888888888888888888888888888888787777774 8888888887766555543 6777788
Q ss_pred ceEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCC
Q 000568 1285 QQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPK 1353 (1416)
Q Consensus 1285 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 1353 (1416)
+.|++++|.. ...+|... ..+++|+.|++++|+-...+|. ...+..+....+.+|+.
T Consensus 550 ~~L~Ls~N~l-~~~~p~~l----------~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 550 SQLDLSQNQL-SGEIPKNL----------GNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNID 606 (968)
T ss_pred CEEECCCCcc-cccCChhH----------hcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCcc
Confidence 8888877532 22333321 3445566666666543334442 23334444444445443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=400.52 Aligned_cols=258 Identities=18% Similarity=0.174 Sum_probs=195.1
Q ss_pred cCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccC-CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCee
Q 000568 966 CKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEIL 1044 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 1044 (1416)
++|+.|++++|.+.+.+|..+..+++|+.|++++|.+...+| .+..+++|+.|++++|.+.+.+|..+ ..+++|+.|
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L 409 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRV 409 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEE
Confidence 455666666666665666666666666666666666555444 23345566666666666555555554 455666666
Q ss_pred EEccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhcc
Q 000568 1045 NIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESL 1124 (1416)
Q Consensus 1045 ~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~ 1124 (1416)
++++|... +.++.
T Consensus 410 ~L~~n~l~------------------------------------------------------------------~~~p~- 422 (968)
T PLN00113 410 RLQDNSFS------------------------------------------------------------------GELPS- 422 (968)
T ss_pred ECcCCEee------------------------------------------------------------------eECCh-
Confidence 66554311 11111
Q ss_pred ccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCC
Q 000568 1125 EVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAK 1204 (1416)
Q Consensus 1125 ~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 1204 (1416)
.+..++ +|+.|++++|.+.+.++..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|.....+|..+..+++
T Consensus 423 ~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 423 EFTKLP-LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred hHhcCC-CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc
Confidence 233343 89999999999999988888999999999999999998888765 4589999999988877778877777899
Q ss_pred cceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCc
Q 000568 1205 LTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSL 1284 (1416)
Q Consensus 1205 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L 1284 (1416)
|+.|++++|.+.+.+|..+.++++|++|++++|.+++..|..+..++ +|+.|++++|.....+|.. +..+++|
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~------l~~l~~L 573 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP-VLSQLDLSQNQLSGEIPKN------LGNVESL 573 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc-cCCEEECCCCcccccCChh------HhcCccc
Confidence 99999999999999999999999999999999999999999999995 9999999999877666654 8889999
Q ss_pred ceEEEeccCCcccccCCc
Q 000568 1285 QQLRIRGRDQDVVSFPPE 1302 (1416)
Q Consensus 1285 ~~L~l~~~~~~~~~~~~~ 1302 (1416)
+.|++++|. ....+|..
T Consensus 574 ~~l~ls~N~-l~~~~p~~ 590 (968)
T PLN00113 574 VQVNISHNH-LHGSLPST 590 (968)
T ss_pred CEEeccCCc-ceeeCCCc
Confidence 999999975 33456643
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-28 Score=256.34 Aligned_cols=475 Identities=20% Similarity=0.226 Sum_probs=299.9
Q ss_pred cCCCccccceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCc
Q 000568 600 KLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQ 679 (1416)
Q Consensus 600 ~l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 679 (1416)
.+++|..|.+|++++|++.++|.+|+++..++.|+.++| .+.++|+.++.+.+|++|+.++|. +.++|++|+.+..|.
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLE 140 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhh
Confidence 677888888999999999999999999999999999995 788899999999999999999998 889999988887777
Q ss_pred ccCceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccC
Q 000568 680 TLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDML 759 (1416)
Q Consensus 680 ~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 759 (1416)
.|..... + +.. ..+.+
T Consensus 141 dl~~~~N------------------------~---i~s-------------------------------------lp~~~ 156 (565)
T KOG0472|consen 141 DLDATNN------------------------Q---ISS-------------------------------------LPEDM 156 (565)
T ss_pred hhhcccc------------------------c---ccc-------------------------------------CchHH
Confidence 6621000 0 000 00011
Q ss_pred CCCCCcceEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCCCCCC
Q 000568 760 KPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIP 839 (1416)
Q Consensus 760 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 839 (1416)
..+..|..+.+.++....+|+..- .++.|++|+...|.+....|.++.+.+|+.|++..+. +..++
T Consensus 157 ~~~~~l~~l~~~~n~l~~l~~~~i--~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP----------- 222 (565)
T KOG0472|consen 157 VNLSKLSKLDLEGNKLKALPENHI--AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLP----------- 222 (565)
T ss_pred HHHHHHHHhhccccchhhCCHHHH--HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCC-----------
Confidence 112233334444444444444332 1455666666655554444456666666666665432 11110
Q ss_pred CCCccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCcccCCCCCCCCccEEEEecccCcccccCCCCcceEEE
Q 000568 840 FPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFK 919 (1416)
Q Consensus 840 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~ 919 (1416)
+|+.+..|++|+++. ++++ .+|..
T Consensus 223 -------------------------ef~gcs~L~Elh~g~-N~i~-~lpae----------------------------- 246 (565)
T KOG0472|consen 223 -------------------------EFPGCSLLKELHVGE-NQIE-MLPAE----------------------------- 246 (565)
T ss_pred -------------------------CCCccHHHHHHHhcc-cHHH-hhHHH-----------------------------
Confidence 134455566666655 3444 33321
Q ss_pred EcCCCCcceecccccccceEEEcCCCCcccchhHHHHHHHhhhhcccCccEEEeecCCCCccccccccCCCCcceEEEcc
Q 000568 920 IDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRS 999 (1416)
Q Consensus 920 l~~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~ 999 (1416)
....+++|..||+..|++ ++.|..++-+++|+.||+++
T Consensus 247 -----------------------------------------~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 247 -----------------------------------------HLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred -----------------------------------------Hhcccccceeeecccccc-ccCchHHHHhhhhhhhcccC
Confidence 111225788899999876 77899999999999999999
Q ss_pred CCCccccCCCCCCCCccEEeEccCCCCCcCchhhh-cCCCCCcCeeEE-ccCCCcccccCCCCCCCCceEeeecCCCccc
Q 000568 1000 CSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWM-CETNSSLEILNI-AGCSSLTYITGVQLPPSLKLLLIFDCDSIRT 1077 (1416)
Q Consensus 1000 n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l-~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~ 1077 (1416)
|.+..-.++.+++ .|+.|-+.+|++-+ +-..+. .+.-.-|++|.= ..|..+..-.++.- ..
T Consensus 285 N~is~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e---------------~~ 347 (565)
T KOG0472|consen 285 NDISSLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE---------------TA 347 (565)
T ss_pred CccccCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCccccc---------------cc
Confidence 9887665677777 89999999998433 221111 000011222221 11121111111000 00
Q ss_pred ccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhccccCCC-CCCccEEEEecCCchhhhHHhhccCCc
Q 000568 1078 LTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNL-PQSLKFLDVWECPKLESIAERLNNNTS 1156 (1416)
Q Consensus 1078 l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l-~~~L~~L~L~~n~~~~~~~~~~~~l~~ 1156 (1416)
-+.+. ............+.+.+. ....+.+|..-|..- ..-.+..+++.|.+. ++|..+..+..
T Consensus 348 ~t~~~---~~~~~~~~~i~tkiL~~s-----------~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lke 412 (565)
T KOG0472|consen 348 MTLPS---ESFPDIYAIITTKILDVS-----------DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKE 412 (565)
T ss_pred CCCCC---Ccccchhhhhhhhhhccc-----------ccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHH
Confidence 00000 000000000011111111 111122222111000 013677888888765 56777777777
Q ss_pred ccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCccceeeeec
Q 000568 1157 LEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGD 1236 (1416)
Q Consensus 1157 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~ 1236 (1416)
+.+.-+..|+..+.+|..+..+++|..|+++ |+.+.++|..++.+..|++|+++.|++. .+|..+..+..|+.+-.++
T Consensus 413 lvT~l~lsnn~isfv~~~l~~l~kLt~L~L~-NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPLELSQLQKLTFLDLS-NNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHHhhcCccccchHHHHhhhcceeeecc-cchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 7777666777777888888999999999998 6788889998888889999999999775 7788888888899998899
Q ss_pred CCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCC
Q 000568 1237 VLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQ 1294 (1416)
Q Consensus 1237 n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 1294 (1416)
|++..+.+..+.++ .+|+.|++.+|. +..+|+. ++++++|++|.+++|+.
T Consensus 491 nqi~~vd~~~l~nm-~nL~tLDL~nNd-lq~IPp~------LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNM-RNLTTLDLQNND-LQQIPPI------LGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccccChHHhhhh-hhcceeccCCCc-hhhCChh------hccccceeEEEecCCcc
Confidence 99999988888888 599999998865 4445543 89999999999999864
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-26 Score=248.81 Aligned_cols=366 Identities=16% Similarity=0.123 Sum_probs=261.8
Q ss_pred ccCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCC-ccEEeEccCCCCCcCchhhhcCCCCCcCe
Q 000568 965 SCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSK-LRLITIWDCEALKSLPEAWMCETNSSLEI 1043 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 1043 (1416)
++.-+.|++++|++...-+..|.++++|+++++..|.+ ..+|.++.... |+.|++.+|.+.+.-.+.. ..++.|+.
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALRS 153 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhcccccccccceeEEeeeccccccccHHHH--HhHhhhhh
Confidence 35667899999999888888899999999999998855 46887666554 9999999999776666665 67899999
Q ss_pred eEEccCCCcccccCCCCCC--CCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchh
Q 000568 1044 LNIAGCSSLTYITGVQLPP--SLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATL 1121 (1416)
Q Consensus 1044 L~l~~c~~l~~l~~~~~~~--~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~ 1121 (1416)
||++. +.+..++...+|. ++++|++. ++.++. ++.-.+.++.+|..+-.++|-...+
T Consensus 154 lDLSr-N~is~i~~~sfp~~~ni~~L~La-----------~N~It~---------l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 154 LDLSR-NLISEIPKPSFPAKVNIKKLNLA-----------SNRITT---------LETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred hhhhh-chhhcccCCCCCCCCCceEEeec-----------cccccc---------cccccccccchheeeecccCccccc
Confidence 99998 4455555545553 35555443 333332 3333456666777776677777777
Q ss_pred hccccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCC
Q 000568 1122 ESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP 1201 (1416)
Q Consensus 1122 ~~~~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 1201 (1416)
|...|.++| .|+.|+|..|.+-..-...|..+++|+.|.|..|.+...-...|..+.++++|+|..|+....-....+.
T Consensus 213 p~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 213 PQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred CHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 777777787 8888888888776544556788888888888888877766677788888888888755443333334455
Q ss_pred CCCcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCC
Q 000568 1202 CAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRF 1281 (1416)
Q Consensus 1202 ~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l 1281 (1416)
+++|+.|+++.|.+...-++....+++|+.|+|++|+++.+.+..+..+ ..|+.|++++|. +..+.+. +|..+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Ns-i~~l~e~-----af~~l 364 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNS-IDHLAEG-----AFVGL 364 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccc-hHHHHhh-----HHHHh
Confidence 7888888888888887777777778888888888888888888888777 488888888864 4444443 37888
Q ss_pred CCcceEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCccccc-CccccCCcCcEEecCCCCCCCCCCC
Q 000568 1282 SSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSS-SIFYHQNLTKLKLCNCPKLKYFPEK 1360 (1416)
Q Consensus 1282 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~~ 1360 (1416)
++|++|++++|.. ....++. ...+.-+++|+.|++.+ ++++++|. ++..+++|+.|+|.+|+ +.++-+.
T Consensus 365 ssL~~LdLr~N~l--s~~IEDa------a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~n 434 (873)
T KOG4194|consen 365 SSLHKLDLRSNEL--SWCIEDA------AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPN 434 (873)
T ss_pred hhhhhhcCcCCeE--EEEEecc------hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeeccc
Confidence 8888888887632 2211111 11223477888888888 68888875 55566888888888887 6666554
Q ss_pred CC-ccccceeeec
Q 000568 1361 GL-PASLLRLEIS 1372 (1416)
Q Consensus 1361 ~~-~~sL~~L~l~ 1372 (1416)
.+ +-.|++|.+.
T Consensus 435 AFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 435 AFEPMELKELVMN 447 (873)
T ss_pred ccccchhhhhhhc
Confidence 43 3467777654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-27 Score=271.46 Aligned_cols=268 Identities=22% Similarity=0.222 Sum_probs=189.2
Q ss_pred cCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccC-CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCee
Q 000568 966 CKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEIL 1044 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 1044 (1416)
.+|+++++++|++ ..+|.++..+.+|+.|...+|.+. .+| .+....+|+.|.+..|. ++.+|... ..+.+|+.|
T Consensus 241 ~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNL-SNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhh-hcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeee
Confidence 5788999999887 456689999999999999998774 444 56667888888888888 55566544 568889999
Q ss_pred EEccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhcc
Q 000568 1045 NIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESL 1124 (1416)
Q Consensus 1045 ~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~ 1124 (1416)
++..+ ++..+|.. + +..+.. .++.+.. +.+.....+..
T Consensus 316 dL~~N-~L~~lp~~-~---l~v~~~----~l~~ln~---------------------------------s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 316 DLQSN-NLPSLPDN-F---LAVLNA----SLNTLNV---------------------------------SSNKLSTLPSY 353 (1081)
T ss_pred eehhc-cccccchH-H---HhhhhH----HHHHHhh---------------------------------hhccccccccc
Confidence 99883 33333320 0 000000 0000000 00000011110
Q ss_pred ccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCC
Q 000568 1125 EVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAK 1204 (1416)
Q Consensus 1125 ~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 1204 (1416)
.-..+ +.|+.|++.+|.+++.....+.++++|+.|+|++|.+.......+.+++.|++|+|++ +.++.+|.....|+.
T Consensus 354 ~e~~~-~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 354 EENNH-AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGR 431 (1081)
T ss_pred cchhh-HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhh
Confidence 11122 3799999999999998888899999999999999997665556788999999999996 567788888888999
Q ss_pred cceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCC-CCcceeEecCCCCCcccccccCCCCCCCCCCC
Q 000568 1205 LTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLP-TNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSS 1283 (1416)
Q Consensus 1205 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~-~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~ 1283 (1416)
|++|...+|.+. .+| .+..++.|+.+|+|.|.++.+.... .+| ++|++|+++||..+..-. ..+..+.+
T Consensus 432 L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~--~~p~p~LkyLdlSGN~~l~~d~------~~l~~l~~ 501 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE--ALPSPNLKYLDLSGNTRLVFDH------KTLKVLKS 501 (1081)
T ss_pred hHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh--hCCCcccceeeccCCcccccch------hhhHHhhh
Confidence 999999999987 777 7889999999999999998876543 344 699999999998643211 12556666
Q ss_pred cceEEEecc
Q 000568 1284 LQQLRIRGR 1292 (1416)
Q Consensus 1284 L~~L~l~~~ 1292 (1416)
+..+++.-+
T Consensus 502 l~~~~i~~~ 510 (1081)
T KOG0618|consen 502 LSQMDITLN 510 (1081)
T ss_pred hhheecccC
Confidence 666666543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-27 Score=247.34 Aligned_cols=485 Identities=24% Similarity=0.244 Sum_probs=287.6
Q ss_pred cceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCcccCceEE
Q 000568 607 FTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVV 686 (1416)
Q Consensus 607 L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~ 686 (1416)
|..|.+++|++..+-+.+.+|..|.+|++.+| .+..+|.+|+.+..++.|++++|. +.++|..++.+.+|..|....
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~- 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSS- 123 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccc-
Confidence 44688999999999888999999999999995 788999999999999999999998 999999999888887772100
Q ss_pred cCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccCCCCCCcc
Q 000568 687 GNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLE 766 (1416)
Q Consensus 687 ~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~ 766 (1416)
.+ ++.+ .+.+..+..|+
T Consensus 124 -----------------------n~--------------------~~el--------------------~~~i~~~~~l~ 140 (565)
T KOG0472|consen 124 -----------------------NE--------------------LKEL--------------------PDSIGRLLDLE 140 (565)
T ss_pred -----------------------cc--------------------eeec--------------------CchHHHHhhhh
Confidence 00 0000 00111122344
Q ss_pred eEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCCCCCCCCCccEE
Q 000568 767 EFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETL 846 (1416)
Q Consensus 767 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L 846 (1416)
.+...+|....+|..++ .+.+|..|++.+|++....|..-.+..|+.|+...+ .++
T Consensus 141 dl~~~~N~i~slp~~~~--~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~--------------------- 196 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMV--NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLE--------------------- 196 (565)
T ss_pred hhhccccccccCchHHH--HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhh---------------------
Confidence 44445555555565554 255556666666555433333333444444443221 111
Q ss_pred eccCCcccccccccCCcccccCCCcccEEeecCCcCcccCCCCCCCCccEEEEecccCcccccCCCCcceEEEEcCCCCc
Q 000568 847 HFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKV 926 (1416)
Q Consensus 847 ~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~ 926 (1416)
..|++++.+.+|+.|++.. +++. .+|+
T Consensus 197 --------------tlP~~lg~l~~L~~LyL~~-Nki~-~lPe------------------------------------- 223 (565)
T KOG0472|consen 197 --------------TLPPELGGLESLELLYLRR-NKIR-FLPE------------------------------------- 223 (565)
T ss_pred --------------cCChhhcchhhhHHHHhhh-cccc-cCCC-------------------------------------
Confidence 1122344555555555555 3444 3332
Q ss_pred ceecccccccceEEEcCCCCcccchhHHHHHHHhhhhcccCccEEEeecCCCCcccccc-ccCCCCcceEEEccCCCccc
Q 000568 927 VWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQS-LLNLSSLREIYIRSCSSLVS 1005 (1416)
Q Consensus 927 ~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~-l~~l~~L~~L~L~~n~~~~~ 1005 (1416)
|.+|+ .|++|+++.|++ ..+|.. ..++++|..||+..|++...
T Consensus 224 --------------f~gcs---------------------~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklke~ 267 (565)
T KOG0472|consen 224 --------------FPGCS---------------------LLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLKEV 267 (565)
T ss_pred --------------CCccH---------------------HHHHHHhcccHH-HhhHHHHhcccccceeeeccccccccC
Confidence 22222 344555555554 445544 34788888888888866543
Q ss_pred cCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCcccccCC----CCCCCCceEeeecCCCccccccc
Q 000568 1006 FPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGV----QLPPSLKLLLIFDCDSIRTLTVE 1081 (1416)
Q Consensus 1006 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~i~~~~~L~~l~~~ 1081 (1416)
..++..+.+|..|++++|. ++.+|... +++ .|+.|.+.|+|--+ +... ....-||+| ++-.
T Consensus 268 Pde~clLrsL~rLDlSNN~-is~Lp~sL--gnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyL--------rs~~-- 332 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNND-ISSLPYSL--GNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYL--------RSKI-- 332 (565)
T ss_pred chHHHHhhhhhhhcccCCc-cccCCccc--ccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHH--------HHhh--
Confidence 3355667778888888877 45566655 566 67777777754211 1000 000001111 0000
Q ss_pred ccccccCCccccccccceEEecCCCCcccccccCCCcchhhcccc---CCCCCCccEEEEecCCchhhhHHhhccCC--c
Q 000568 1082 EGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEV---GNLPQSLKFLDVWECPKLESIAERLNNNT--S 1156 (1416)
Q Consensus 1082 ~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~---~~l~~~L~~L~L~~n~~~~~~~~~~~~l~--~ 1156 (1416)
.|..+..--....-.++.++..+ ..+ -+.+.|++++-.++....+.|.... -
T Consensus 333 ----------------------~~dglS~se~~~e~~~t~~~~~~~~~~~~-i~tkiL~~s~~qlt~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 333 ----------------------KDDGLSQSEGGTETAMTLPSESFPDIYAI-ITTKILDVSDKQLTLVPDEVFEAAKSEI 389 (565)
T ss_pred ----------------------ccCCCCCCcccccccCCCCCCcccchhhh-hhhhhhcccccccccCCHHHHHHhhhcc
Confidence 00000000000000000011011 111 2678888888777654444333322 3
Q ss_pred ccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCccceeeeec
Q 000568 1157 LEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGD 1236 (1416)
Q Consensus 1157 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~ 1236 (1416)
....+++.|++. .+|..+..+..+.+.-+..++.+..+|.....+++|..|++++|.+. .+|..++.+..|+.|++++
T Consensus 390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence 788999999955 46888887777777666656777666666666899999999988754 8899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCCcccccCCcccccCCCCcCcCCC
Q 000568 1237 VLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLP 1316 (1416)
Q Consensus 1237 n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1316 (1416)
|++..+. .....+ ..|+.+ +.+++++..+++. ++.++.+|.+|++.+
T Consensus 468 NrFr~lP-~~~y~l-q~lEtl-las~nqi~~vd~~-----~l~nm~nL~tLDL~n------------------------- 514 (565)
T KOG0472|consen 468 NRFRMLP-ECLYEL-QTLETL-LASNNQIGSVDPS-----GLKNMRNLTTLDLQN------------------------- 514 (565)
T ss_pred cccccch-HHHhhH-HHHHHH-HhccccccccChH-----HhhhhhhcceeccCC-------------------------
Confidence 9776552 211111 233333 3344455555433 266666666666655
Q ss_pred CcccceeccccccCcccccCccccCCcCcEEecCCCCCC
Q 000568 1317 ATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLK 1355 (1416)
Q Consensus 1317 ~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~ 1355 (1416)
+.+..+|+.++++.+|++|++++|+ ++
T Consensus 515 -----------Ndlq~IPp~LgnmtnL~hLeL~gNp-fr 541 (565)
T KOG0472|consen 515 -----------NDLQQIPPILGNMTNLRHLELDGNP-FR 541 (565)
T ss_pred -----------CchhhCChhhccccceeEEEecCCc-cC
Confidence 4777888888888999999999988 55
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-24 Score=236.51 Aligned_cols=365 Identities=16% Similarity=0.132 Sum_probs=217.4
Q ss_pred cceEEEEcCCCCcceecccccccceEEEcCCCCcccchhHHHHHHHh--hhhcccCccEEEeecCCCCccccccccCCCC
Q 000568 914 ALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQ--LCDLSCKLEYLGLSYCQGLVTLPQSLLNLSS 991 (1416)
Q Consensus 914 ~L~~L~l~~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~--~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~ 991 (1416)
.-+.|+++++..-.+ ....+.++++|+.+.+..|..... +......|+.|+|.+|.+...-.+.+.-++.
T Consensus 79 ~t~~LdlsnNkl~~i--------d~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHI--------DFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred ceeeeeccccccccC--------cHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 345577766543211 122467788888888877766533 2223456888888888877777777888888
Q ss_pred cceEEEccCCCccccC--CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCcccccCCCCCCCCceEee
Q 000568 992 LREIYIRSCSSLVSFP--EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLI 1069 (1416)
Q Consensus 992 L~~L~L~~n~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i 1069 (1416)
|+.|||+.|.+.. +| .+..-.++++|++++|.+...-...| .++.+|..|.++.+ .++.+|. . .+
T Consensus 151 lrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrN-rittLp~-----r----~F 217 (873)
T KOG4194|consen 151 LRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRN-RITTLPQ-----R----SF 217 (873)
T ss_pred hhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecccC-cccccCH-----H----Hh
Confidence 8888888886553 33 34444578888888888655444444 67778888888873 2333321 1 12
Q ss_pred ecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhccccCCCCCCccEEEEecCCchhhhHH
Q 000568 1070 FDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAE 1149 (1416)
Q Consensus 1070 ~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~~~~~ 1149 (1416)
.+++.|+.+++..+++ .......|.++| +|+.|.+..|.+...-.+
T Consensus 218 k~L~~L~~LdLnrN~i---------------------------------rive~ltFqgL~-Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 218 KRLPKLESLDLNRNRI---------------------------------RIVEGLTFQGLP-SLQNLKLQRNDISKLDDG 263 (873)
T ss_pred hhcchhhhhhccccce---------------------------------eeehhhhhcCch-hhhhhhhhhcCcccccCc
Confidence 2334444444433333 333333445554 666666666666665556
Q ss_pred hhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCcc
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCL 1229 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L 1229 (1416)
.|..+.++++|+|+.|++...-..++.++++|+.|++++|..-..-+.++.-+++|++|+|++|++...-+..|..+..|
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 66666677777777766665555566666777777776443333323334445667777777776665555666666677
Q ss_pred ceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCCcccccCCcccccCCC
Q 000568 1230 QHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGL 1309 (1416)
Q Consensus 1230 ~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 1309 (1416)
+.|.|++|++..+....|.++ ++|+.|++++|...-.+-+ ....+.++++|+.|++.+| .+.++|.-.|
T Consensus 344 e~LnLs~Nsi~~l~e~af~~l-ssL~~LdLr~N~ls~~IED---aa~~f~gl~~LrkL~l~gN--qlk~I~krAf----- 412 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGL-SSLHKLDLRSNELSWCIED---AAVAFNGLPSLRKLRLTGN--QLKSIPKRAF----- 412 (873)
T ss_pred hhhcccccchHHHHhhHHHHh-hhhhhhcCcCCeEEEEEec---chhhhccchhhhheeecCc--eeeecchhhh-----
Confidence 777777776666666666666 3677777766553332222 1234666667777777664 4555555443
Q ss_pred CcCcCCCCcccceeccccccCcccccCccccCCcCcEEec
Q 000568 1310 GTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLC 1349 (1416)
Q Consensus 1310 ~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 1349 (1416)
.-+++|++|++.+ +-+.++....+....|++|-+.
T Consensus 413 ----sgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 413 ----SGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred ----ccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 2455666666666 4555554444443466666554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-24 Score=252.62 Aligned_cols=267 Identities=20% Similarity=0.181 Sum_probs=142.8
Q ss_pred CCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCcccccCCCCCCCCceEe
Q 000568 989 LSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLL 1068 (1416)
Q Consensus 989 l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 1068 (1416)
.++|+.|+.++|.+.+..+ ...+.+|+++++++|+ +..+|.+. ..+.+|+.|++.++. +..++. .
T Consensus 218 g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~-l~~lp~wi--~~~~nle~l~~n~N~-l~~lp~-----r----- 282 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNN-LSNLPEWI--GACANLEALNANHNR-LVALPL-----R----- 282 (1081)
T ss_pred CcchheeeeccCcceeecc-ccccccceeeecchhh-hhcchHHH--HhcccceEecccchh-HHhhHH-----H-----
Confidence 3677888888887774333 3456788888888887 55667444 677888888877732 111111 0
Q ss_pred eecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhccccCCCCCCccEEEEecCCchhhhH
Q 000568 1069 IFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIA 1148 (1416)
Q Consensus 1069 i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~~~~ 1148 (1416)
+. .. ++|+.|.+..|.+. .+|
T Consensus 283 ---------------------------------i~------------------------~~-~~L~~l~~~~nel~-yip 303 (1081)
T KOG0618|consen 283 ---------------------------------IS------------------------RI-TSLVSLSAAYNELE-YIP 303 (1081)
T ss_pred ---------------------------------Hh------------------------hh-hhHHHHHhhhhhhh-hCC
Confidence 00 00 24445555454332 334
Q ss_pred HhhccCCcccEEeeccCCCcccccccccCCCC-cceeeeccCCCcccccC-CCCCCCCcceEEEccccCCCcCcccccCc
Q 000568 1149 ERLNNNTSLEVIDIGNCENLKILPSGLHNLCQ-LQRISIWCCGNLVSFSE-GGLPCAKLTRLEISECERLEALPRGLRNL 1226 (1416)
Q Consensus 1149 ~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~-L~~L~L~~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~p~~l~~l 1226 (1416)
.....+++|++|+|..|.+....+..+..+.. |..|+.+ ++.+...|. +....+.|+.|.+.+|.++...-..+.+.
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 44555666666666666644433323332222 5555555 333333331 12224566777777777666554556666
Q ss_pred CccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCCcccccCCccccc
Q 000568 1227 TCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIG 1306 (1416)
Q Consensus 1227 ~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 1306 (1416)
..|+.|+|++|++..+....+.+++ .|+.|+++|| .++.+++. +..+..|++|...+| .+.+||+.
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle-~LeeL~LSGN-kL~~Lp~t------va~~~~L~tL~ahsN--~l~~fPe~---- 448 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLE-ELEELNLSGN-KLTTLPDT------VANLGRLHTLRAHSN--QLLSFPEL---- 448 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchH-HhHHHhcccc-hhhhhhHH------HHhhhhhHHHhhcCC--ceeechhh----
Confidence 7777777777766665555555553 6666666664 34444433 455556666655543 34444422
Q ss_pred CCCCcCcCCCCcccceeccccccCccc--ccCccccCCcCcEEecCCCC
Q 000568 1307 LGLGTTLPLPATLTYLVIADLPNLERL--SSSIFYHQNLTKLKLCNCPK 1353 (1416)
Q Consensus 1307 ~~~~~~~~~~~sL~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~~~~ 1353 (1416)
.+++.|+.++++. |+|+.+ |...-+ |+|++|+++||..
T Consensus 449 -------~~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 449 -------AQLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred -------hhcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 2444555555553 444432 211111 5566666666553
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-24 Score=234.68 Aligned_cols=387 Identities=19% Similarity=0.218 Sum_probs=259.0
Q ss_pred ccccceeeccCCCcc--ccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCccc
Q 000568 604 LRVFTVLNLSRTNIR--NLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTL 681 (1416)
Q Consensus 604 L~~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 681 (1416)
|+..+-.|+++|+++ .+|.++..++.++.|.|.. +.+..+|+.++.|.+|+||.+++|. +..+-.+++.|+.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHH
Confidence 445566788888887 6798899999999999988 6888999999999999999999988 77776666677777666
Q ss_pred CceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccCCC
Q 000568 682 CNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKP 761 (1416)
Q Consensus 682 ~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 761 (1416)
.+.-+++.+.. .+..+-.+..|+.|+|+.+. ..++...+..
T Consensus 84 ------------------------~~R~N~LKnsG-----iP~diF~l~dLt~lDLShNq----------L~EvP~~LE~ 124 (1255)
T KOG0444|consen 84 ------------------------IVRDNNLKNSG-----IPTDIFRLKDLTILDLSHNQ----------LREVPTNLEY 124 (1255)
T ss_pred ------------------------hhhccccccCC-----CCchhcccccceeeecchhh----------hhhcchhhhh
Confidence 12222222211 12334556667777775221 1223445556
Q ss_pred CCCcceEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCCCCCCCC
Q 000568 762 HQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFP 841 (1416)
Q Consensus 762 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~ 841 (1416)
.+++-.|+++.|.+..+|..+.- .+..|-.|+|++|.+....|....|.+|++|.|++++... .
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h-f-------------- 188 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH-F-------------- 188 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH-H--------------
Confidence 67777888888888888876543 4667777888888775555567777788888887754110 0
Q ss_pred CccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCcccCCCCCCCCccEEEEecccCcccccCCCCcceEEEEc
Q 000568 842 CLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKID 921 (1416)
Q Consensus 842 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~ 921 (1416)
.+. ++.++.+|+.|++++.+.-...+|..+..
T Consensus 189 -----QLr---------------QLPsmtsL~vLhms~TqRTl~N~Ptsld~---------------------------- 220 (1255)
T KOG0444|consen 189 -----QLR---------------QLPSMTSLSVLHMSNTQRTLDNIPTSLDD---------------------------- 220 (1255)
T ss_pred -----HHh---------------cCccchhhhhhhcccccchhhcCCCchhh----------------------------
Confidence 000 12345566666666632222233322110
Q ss_pred CCCCcceecccccccceEEEcCCCCcccchhHHHHHHHhhhhcccCccEEEeecCCCCccccccccCCCCcceEEEccCC
Q 000568 922 GCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCS 1001 (1416)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~i~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~ 1001 (1416)
+.+|..+++|.|.+ ..+|.++-.+++|+.|+||+|.
T Consensus 221 -------------------------------------------l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 221 -------------------------------------------LHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred -------------------------------------------hhhhhhccccccCC-CcchHHHhhhhhhheeccCcCc
Confidence 14777888888866 6778889999999999999998
Q ss_pred CccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCcccccCCCCCCCCceEeeecCCCccccccc
Q 000568 1002 SLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVE 1081 (1416)
Q Consensus 1002 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~ 1081 (1416)
+...--....-.+|++|+++.|+ +..+|... ..++.|+.|.+.+ +.+....+|+.+.+|
T Consensus 257 iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~av--cKL~kL~kLy~n~----NkL~FeGiPSGIGKL-------------- 315 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSRNQ-LTVLPDAV--CKLTKLTKLYANN----NKLTFEGIPSGIGKL-------------- 315 (1255)
T ss_pred eeeeeccHHHHhhhhhhccccch-hccchHHH--hhhHHHHHHHhcc----CcccccCCccchhhh--------------
Confidence 77544445566788999999988 67788877 6888899988887 333333455443221
Q ss_pred ccccccCCccccccccceEEecCCCCcccccccCCCcchhhccccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEe
Q 000568 1082 EGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVID 1161 (1416)
Q Consensus 1082 ~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1161 (1416)
..|+.+..++| .++.+|+.++.|..|+.|.
T Consensus 316 -------------------------------------------------~~Levf~aanN-~LElVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 316 -------------------------------------------------IQLEVFHAANN-KLELVPEGLCRCVKLQKLK 345 (1255)
T ss_pred -------------------------------------------------hhhHHHHhhcc-ccccCchhhhhhHHHHHhc
Confidence 14555555544 4567888899999999999
Q ss_pred eccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEc
Q 000568 1162 IGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEIS 1211 (1416)
Q Consensus 1162 Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~ 1211 (1416)
|++|.+.+ +|+.++-++.|+.|++..|+++.--|...-.-.+|+.-+|.
T Consensus 346 L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 346 LDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccccceee-chhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 99998665 57888899999999999888876544322112355554443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-24 Score=237.94 Aligned_cols=342 Identities=19% Similarity=0.212 Sum_probs=261.7
Q ss_pred ccCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCC-cCchhhhcCCCCCcCe
Q 000568 965 SCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALK-SLPEAWMCETNSSLEI 1043 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~ 1043 (1416)
+++++.|.|...++ ..+|..++.+.+|+.|.+++|++.+.......+|.|+.+.+.+|+... -+|..+ -.+.-|..
T Consensus 31 Mt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di--F~l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI--FRLKDLTI 107 (1255)
T ss_pred hhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh--ccccccee
Confidence 47889999988654 778999999999999999999988877788889999999999988643 367766 37888999
Q ss_pred eEEccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhc
Q 000568 1044 LNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLES 1123 (1416)
Q Consensus 1044 L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~ 1123 (1416)
|++|++. +. .+|..|+ .-.++..+..++|...++|.
T Consensus 108 lDLShNq-L~-----EvP~~LE--------------------------------------~AKn~iVLNLS~N~IetIPn 143 (1255)
T KOG0444|consen 108 LDLSHNQ-LR-----EVPTNLE--------------------------------------YAKNSIVLNLSYNNIETIPN 143 (1255)
T ss_pred eecchhh-hh-----hcchhhh--------------------------------------hhcCcEEEEcccCccccCCc
Confidence 9999832 22 3343332 11223333334444445555
Q ss_pred cccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCC-cccccCCCCCC
Q 000568 1124 LEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGN-LVSFSEGGLPC 1202 (1416)
Q Consensus 1124 ~~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~-l~~~~~~~~~~ 1202 (1416)
.-+.++ ..|-.|+|++|++ +.+|..+..+..|++|+|++|++.-.--..+.++++|++|++++.+. +..+|+..-.+
T Consensus 144 ~lfinL-tDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 144 SLFINL-TDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred hHHHhh-HhHhhhccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh
Confidence 444444 3788899998865 46777889999999999999987654334556778889999986544 45677777778
Q ss_pred CCcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCC
Q 000568 1203 AKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFS 1282 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~ 1282 (1416)
.+|..+|++.|.+. .+|+.+.++++|+.|+||+|.|+.+.. ....+ .+|++|++++|+ ++.+|+- +..|+
T Consensus 222 ~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W-~~lEtLNlSrNQ-Lt~LP~a------vcKL~ 291 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGEW-ENLETLNLSRNQ-LTVLPDA------VCKLT 291 (1255)
T ss_pred hhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHHH-hhhhhhccccch-hccchHH------HhhhH
Confidence 89999999999876 778999999999999999999887743 23344 489999999964 6666553 88899
Q ss_pred CcceEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCCC-C
Q 000568 1283 SLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPEK-G 1361 (1416)
Q Consensus 1283 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~ 1361 (1416)
+|+.|.+.+|....+.+|... ..+..|+.+..++ ++++-.|++++.++.|++|.|+.|+ +-.+|+. .
T Consensus 292 kL~kLy~n~NkL~FeGiPSGI----------GKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIH 359 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGI----------GKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIH 359 (1255)
T ss_pred HHHHHHhccCcccccCCccch----------hhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccc-eeechhhhh
Confidence 999999999877777788765 5778888888888 7899999999999999999999887 5667764 5
Q ss_pred CccccceeeecCChhh
Q 000568 1362 LPASLLRLEISGCPLI 1377 (1416)
Q Consensus 1362 ~~~sL~~L~l~~cp~l 1377 (1416)
+.+-|+.||+..||.+
T Consensus 360 lL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNL 375 (1255)
T ss_pred hcCCcceeeccCCcCc
Confidence 6789999999999875
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=247.70 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=85.0
Q ss_pred cCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCcccee
Q 000568 1153 NNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHL 1232 (1416)
Q Consensus 1153 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 1232 (1416)
..++|+.|++++|.....+|..++++++|+.|+|++|+.+..+|... .+++|+.|++++|.....+|.. .++|+.|
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L 851 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDL 851 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEe
Confidence 34677777777777777777777777777777777777777777554 4567777777777766555543 3567777
Q ss_pred eeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEecc
Q 000568 1233 TIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGR 1292 (1416)
Q Consensus 1233 ~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1292 (1416)
++++|.+..+ |.++..++ +|+.|++++|+++..++.. ...+++|+.+++++|
T Consensus 852 ~Ls~n~i~~i-P~si~~l~-~L~~L~L~~C~~L~~l~~~------~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 852 NLSRTGIEEV-PWWIEKFS-NLSFLDMNGCNNLQRVSLN------ISKLKHLETVDFSDC 903 (1153)
T ss_pred ECCCCCCccC-hHHHhcCC-CCCEEECCCCCCcCccCcc------cccccCCCeeecCCC
Confidence 7777766654 44555563 7777777777776665542 455566666666554
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=175.30 Aligned_cols=256 Identities=24% Similarity=0.287 Sum_probs=140.3
Q ss_pred cCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeE
Q 000568 966 CKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILN 1045 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 1045 (1416)
..-..|+++.|.+. .+|..+. ++|+.|++++|++. .+|. .+++|++|++++|.+ +.+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~--lp~~Lk~LdLs~N~L-tsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQL-TSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC--CCCCCcEEEecCCcc-CcccCc-----ccccceee
Confidence 35678899999775 6777665 48999999998765 4664 468899999988874 455642 36788888
Q ss_pred EccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhccc
Q 000568 1046 IAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLE 1125 (1416)
Q Consensus 1046 l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~ 1125 (1416)
+++|. ++.++. +|.
T Consensus 269 Ls~N~-L~~Lp~--lp~--------------------------------------------------------------- 282 (788)
T PRK15387 269 IFSNP-LTHLPA--LPS--------------------------------------------------------------- 282 (788)
T ss_pred ccCCc-hhhhhh--chh---------------------------------------------------------------
Confidence 88753 333331 222
Q ss_pred cCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCc
Q 000568 1126 VGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKL 1205 (1416)
Q Consensus 1126 ~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L 1205 (1416)
+|+.|++++|.+.. +|. .+++|+.|++++|.+.+ +|.. ..+|+.|++++ +.+..+|. .+ .+|
T Consensus 283 ------~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~-N~L~~LP~--lp-~~L 344 (788)
T PRK15387 283 ------GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN-NQLTSLPT--LP-SGL 344 (788)
T ss_pred ------hcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---ccccccccccc-Cccccccc--cc-ccc
Confidence 34444444443332 111 12344555555544433 1211 12344444443 22333332 11 345
Q ss_pred ceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcc
Q 000568 1206 TRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQ 1285 (1416)
Q Consensus 1206 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~ 1285 (1416)
+.|+|++|++. .+|.. .++|+.|++++|.+..+. .+|.+|+.|++++|. ++.++.. .++|+
T Consensus 345 q~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP-----~l~~~L~~LdLs~N~-Lt~LP~l---------~s~L~ 405 (788)
T PRK15387 345 QELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLP-----ALPSGLKELIVSGNR-LTSLPVL---------PSELK 405 (788)
T ss_pred ceEecCCCccC-CCCCC---CcccceehhhccccccCc-----ccccccceEEecCCc-ccCCCCc---------ccCCC
Confidence 55555555544 23321 234455555555544321 122355555555543 2222211 13455
Q ss_pred eEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCC
Q 000568 1286 QLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCP 1352 (1416)
Q Consensus 1286 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 1352 (1416)
.|++++|. +..+|. .+.+|+.|++++ |.++.+|..+..+++|+.|++++|+
T Consensus 406 ~LdLS~N~--LssIP~-------------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 406 ELMVSGNR--LTSLPM-------------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EEEccCCc--CCCCCc-------------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 56666542 333442 234567777776 5788888888888889999998887
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-16 Score=164.59 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=62.8
Q ss_pred eeeccCCCccccCcc-ccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCC-cccccCCccc
Q 000568 609 VLNLSRTNIRNLPES-ITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLR-FGKLTCLQTL 681 (1416)
Q Consensus 609 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 681 (1416)
.++|..|+|+.||+. |+.|++||.|||++|.+...-|..|..|.+|-.|-+.+++.|+.+|.+ |++|..||.|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 577888999999765 889999999999998777777888999999999888885559999987 8999999888
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-13 Score=165.94 Aligned_cols=256 Identities=25% Similarity=0.321 Sum_probs=184.7
Q ss_pred CCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCcccccCCCCCCCCceEee
Q 000568 990 SSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLI 1069 (1416)
Q Consensus 990 ~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i 1069 (1416)
..-..|++++|.+. .+|. ..+++|+.|++.+|+ ++.+|. .+++|+.|++++| .++.+|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~-~l~~~L~~L~L~~N~-Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP------------- 258 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPD-CLPAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGN-QLTSLP------------- 258 (788)
T ss_pred CCCcEEEcCCCCCC-cCCc-chhcCCCEEEccCCc-CCCCCC-----CCCCCcEEEecCC-ccCccc-------------
Confidence 44667888888665 5664 234678889988887 444664 2467888888774 232221
Q ss_pred ecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhccccCCCCCCccEEEEecCCchhhhHH
Q 000568 1070 FDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAE 1149 (1416)
Q Consensus 1070 ~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~~~~~ 1149 (1416)
.+|++|+.|++++|.+.. +|.
T Consensus 259 ----------------------------------------------------------~lp~sL~~L~Ls~N~L~~-Lp~ 279 (788)
T PRK15387 259 ----------------------------------------------------------VLPPGLLELSIFSNPLTH-LPA 279 (788)
T ss_pred ----------------------------------------------------------CcccccceeeccCCchhh-hhh
Confidence 112478899999998664 443
Q ss_pred hhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCcc
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCL 1229 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L 1229 (1416)
..++|+.|++++|.+.. +|. .+++|+.|++++| .+..+|. .+ .+|+.|++++|.+. .+|.. .++|
T Consensus 280 ---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N-~L~~Lp~--lp-~~L~~L~Ls~N~L~-~LP~l---p~~L 344 (788)
T PRK15387 280 ---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDN-QLASLPA--LP-SELCKLWAYNNQLT-SLPTL---PSGL 344 (788)
T ss_pred ---chhhcCEEECcCCcccc-ccc---cccccceeECCCC-ccccCCC--Cc-ccccccccccCccc-ccccc---cccc
Confidence 23678999999998765 443 3578999999965 5666664 22 57999999999987 46542 2589
Q ss_pred ceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCCcccccCCcccccCCC
Q 000568 1230 QHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGL 1309 (1416)
Q Consensus 1230 ~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 1309 (1416)
+.|++++|.+..+.+ +|.+|+.|++++|. +..++.. ..+|+.|++++|. +..+|.
T Consensus 345 q~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~-L~~LP~l---------~~~L~~LdLs~N~--Lt~LP~-------- 399 (788)
T PRK15387 345 QELSVSDNQLASLPT-----LPSELYKLWAYNNR-LTSLPAL---------PSGLKELIVSGNR--LTSLPV-------- 399 (788)
T ss_pred ceEecCCCccCCCCC-----CCcccceehhhccc-cccCccc---------ccccceEEecCCc--ccCCCC--------
Confidence 999999999987532 45799999999865 4455431 2579999999873 445553
Q ss_pred CcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCCC-CCccccceeeecCChh
Q 000568 1310 GTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPEK-GLPASLLRLEISGCPL 1376 (1416)
Q Consensus 1310 ~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~sL~~L~l~~cp~ 1376 (1416)
.+++|+.|++++ +.++.+|.. ..+|+.|++++|. ++.+|.. .-.++|+.|++++||.
T Consensus 400 -----l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 400 -----LPSELKELMVSG-NRLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -----cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCC
Confidence 457899999999 578988853 3579999999987 8999874 3357999999999985
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-13 Score=163.87 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=35.7
Q ss_pred cCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeE
Q 000568 966 CKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILN 1045 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 1045 (1416)
+.|+.|+|++|++. .+|..+. ++|++|++++|.+. .+|. ..+++|+.|++++|.+. .+|..+ .++|+.|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l~~~L~~L~Ls~N~L~-~LP~~l----~s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPA-TLPDTIQEMELSINRIT-ELPERL----PSALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCCh-hhhccccEEECcCCccC-cCChhH----hCCCCEEE
Confidence 35556666665543 3443332 35666666655433 3332 22345566666665532 444433 13455555
Q ss_pred Ecc
Q 000568 1046 IAG 1048 (1416)
Q Consensus 1046 l~~ 1048 (1416)
+++
T Consensus 269 Ls~ 271 (754)
T PRK15370 269 LFH 271 (754)
T ss_pred CcC
Confidence 554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-11 Score=158.83 Aligned_cols=292 Identities=15% Similarity=0.195 Sum_probs=180.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i 268 (1416)
..+|-|..-.+.+. .. ...+++.|.|++|.||||++.+.... ++.++|+++.. +.+...+...+
T Consensus 14 ~~~~~R~rl~~~l~----~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAKLS----GA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHHHh----cc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 34566665444442 21 24689999999999999999988752 23689999864 44666676777
Q ss_pred HHHhcCCCCC-------------CCCHHHHHHHHHHHhc--cccEEEEeccccccChhhHhhhcccc-ccCCCCcEEEEE
Q 000568 269 LRCITKQTID-------------DSDLNLLQEELNKQLS--RKKFLLVLDDVWNENYNDWVDMSRPL-EAGAPGSKIIVT 332 (1416)
Q Consensus 269 l~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~~~~~l-~~~~~gs~iivT 332 (1416)
+..+...... ..+...+...+...+. +.+++|||||+...+..........+ .....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7766421110 0122333333333332 67899999999665433333333333 333456788899
Q ss_pred ccchH-H--HHhhCCCCeeeCC----CCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhcc
Q 000568 333 TRNQE-V--VAIMGTAPAYQLK----RLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRG 405 (1416)
Q Consensus 333 tR~~~-v--~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~ 405 (1416)
||... . ..........++. +|+.+|+.++|........ + .+...+|++.|+|.|+++..++..++.
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----E---AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----C---HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99842 1 1111112345555 9999999999987653221 1 245567999999999999999887754
Q ss_pred CCCcchHHHHHhhcccCCCC-CccCchhHHHH-HHhCCChhHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhh
Q 000568 406 KHGPSDWEDVLNSNIWDLPE-DRCGILPALRV-SYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDE 483 (1416)
Q Consensus 406 ~~~~~~w~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 483 (1416)
..... .... +.+.. ....+...+.- .++.||++.+..+...|+++ .++.+.+-. +...
T Consensus 232 ~~~~~--~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~~----- 291 (903)
T PRK04841 232 NNSSL--HDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTGE----- 291 (903)
T ss_pred CCCch--hhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcCC-----
Confidence 42110 0111 11111 11235554433 48899999999999999986 344332221 1111
Q ss_pred HHHHHHHHHHHHHHhCCcccc-ccCCCCceEehHHHHHHHHHhc
Q 000568 484 EKEELGHQFFQELCSRSFFEK-SSNDTSKFVMHDLVNDLARWAA 526 (1416)
Q Consensus 484 ~~e~~~~~~~~~L~~~sll~~-~~~~~~~~~mHdlv~~~~~~~~ 526 (1416)
+.+...+++|.+++++.. .+++..+|+.|++++++++...
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 113567999999999754 3444568999999999998765
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-13 Score=144.94 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=55.5
Q ss_pred ccCccEEEeecCCCCccccccccCCCCcceEEEccCCCccccC-CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCe
Q 000568 965 SCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEI 1043 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 1043 (1416)
++.-..|+|..|++....+..|+.+++|+.|+|++|.+...-| .+..+.+|..|-+.+++.++.+|...+ ..+.+|+.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHHHHH
Confidence 4566777777777766666677777777777777777665444 456666776666666555666666544 56666666
Q ss_pred eEEcc
Q 000568 1044 LNIAG 1048 (1416)
Q Consensus 1044 L~l~~ 1048 (1416)
|.+.-
T Consensus 145 LllNa 149 (498)
T KOG4237|consen 145 LLLNA 149 (498)
T ss_pred HhcCh
Confidence 66654
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7e-14 Score=130.49 Aligned_cols=168 Identities=30% Similarity=0.416 Sum_probs=125.7
Q ss_pred cCCCccccceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCc
Q 000568 600 KLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQ 679 (1416)
Q Consensus 600 ~l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 679 (1416)
.+-.+.....|-||+|.++.+|+.|..|.+|++|++++| +++++|.+|+.|++|++|+++-|. +..+|.+||.++.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 344455556788999999999999999999999999985 899999999999999999999887 999999999999998
Q ss_pred ccCceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccC
Q 000568 680 TLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDML 759 (1416)
Q Consensus 680 ~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 759 (1416)
.| .+...++..
T Consensus 106 vl------------------------dltynnl~e--------------------------------------------- 116 (264)
T KOG0617|consen 106 VL------------------------DLTYNNLNE--------------------------------------------- 116 (264)
T ss_pred hh------------------------hcccccccc---------------------------------------------
Confidence 88 222222211
Q ss_pred CCCCCcceEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCCCCCC
Q 000568 760 KPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIP 839 (1416)
Q Consensus 760 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 839 (1416)
..+|.-++ .+..|+.|.|++|.+.-..|.++++.+|+.|.+..+..++
T Consensus 117 ----------------~~lpgnff--~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-------------- 164 (264)
T KOG0617|consen 117 ----------------NSLPGNFF--YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-------------- 164 (264)
T ss_pred ----------------ccCCcchh--HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--------------
Confidence 11233232 2566777888888775555578888888888887754221
Q ss_pred CCCccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCcccCCCCCCCCc
Q 000568 840 FPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPAL 894 (1416)
Q Consensus 840 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L 894 (1416)
.|.+++.+..|++|++.+ +.+. .+|..+.+|
T Consensus 165 ----------------------lpkeig~lt~lrelhiqg-nrl~-vlppel~~l 195 (264)
T KOG0617|consen 165 ----------------------LPKEIGDLTRLRELHIQG-NRLT-VLPPELANL 195 (264)
T ss_pred ----------------------CcHHHHHHHHHHHHhccc-ceee-ecChhhhhh
Confidence 122357788889999988 6787 777665554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-12 Score=157.36 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=23.3
Q ss_pred CccEEeEccCCCCCcCchhhhcCCCCCcCeeEEccCCCccccc
Q 000568 1014 KLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYIT 1056 (1416)
Q Consensus 1014 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 1056 (1416)
+...|+++++. +..+|..+ .++|+.|++++| .++.+|
T Consensus 179 ~~~~L~L~~~~-LtsLP~~I----p~~L~~L~Ls~N-~LtsLP 215 (754)
T PRK15370 179 NKTELRLKILG-LTTIPACI----PEQITTLILDNN-ELKSLP 215 (754)
T ss_pred CceEEEeCCCC-cCcCCccc----ccCCcEEEecCC-CCCcCC
Confidence 45678888876 44566543 356888888774 344444
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=9e-10 Score=131.13 Aligned_cols=301 Identities=14% Similarity=0.094 Sum_probs=176.8
Q ss_pred cCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 188 NEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 188 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
.+..++||++++++|...+...- .....+.+.|+|++|+|||++++.++++.......-.++++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 35679999999999999985432 1223456789999999999999999986433322234567777777778889999
Q ss_pred HHHHhcCCCC--CCCCHHHHHHHHHHHhc--cccEEEEeccccccC----hhhHhhhccccccCCCCcE--EEEEccchH
Q 000568 268 ILRCITKQTI--DDSDLNLLQEELNKQLS--RKKFLLVLDDVWNEN----YNDWVDMSRPLEAGAPGSK--IIVTTRNQE 337 (1416)
Q Consensus 268 il~~l~~~~~--~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~~~~~l~~~~~gs~--iivTtR~~~ 337 (1416)
++.++..... ...+.+++...+.+.+. ++..+||||+++.-. .+.+..+...... ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 9999876321 23356677777777775 446899999997642 1223333322221 12333 566666543
Q ss_pred HHHhhC-------CCCeeeCCCCChhhHHHHHHHhhcCC--CCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh--cc-
Q 000568 338 VVAIMG-------TAPAYQLKRLSTDDCLSVFTQHSLDS--RDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL--RG- 405 (1416)
Q Consensus 338 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l--~~- 405 (1416)
+..... ....+.+++++.++..+++..++... ...-.++.++.+++......|..+.|+.++-.+. ..
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332211 12468999999999999998876321 1112223334444444444566778877764432 11
Q ss_pred --C--CCcchHHHHHhhcccCCCCCccCchhHHHHHHhCCChhHHHHHhHhccCCC--CcccCHHHHHHH--HHHcCCCC
Q 000568 406 --K--HGPSDWEDVLNSNIWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLLPK--DYEFEEEEIILL--WIAEGFLD 477 (1416)
Q Consensus 406 --~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~--~~~i~~~~li~~--w~a~g~i~ 477 (1416)
. -+.++...+++.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 1 1234455444432 1123455688999998887765543221 123444444432 23322211
Q ss_pred CCchhhHHHHHHHHHHHHHHhCCccccc
Q 000568 478 HEDRDEEKEELGHQFFQELCSRSFFEKS 505 (1416)
Q Consensus 478 ~~~~~~~~e~~~~~~~~~L~~~sll~~~ 505 (1416)
..- + ......|++.|...++|...
T Consensus 335 ~~~---~-~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 EPR---T-HTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CcC---c-HHHHHHHHHHHHhcCCeEEE
Confidence 110 1 12245688999999998753
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-13 Score=126.44 Aligned_cols=161 Identities=20% Similarity=0.275 Sum_probs=99.6
Q ss_pred ccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcCccce
Q 000568 1152 NNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQH 1231 (1416)
Q Consensus 1152 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 1231 (1416)
.++...+.|.+|+|.+.. +|..+..+.+|+.|+++ |+.+..+|.....+++|+.|+++-|++. .+|..|+++|.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~-nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLS-NNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcc-cchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 345556666677776443 34456677777777776 5666677777666777777777766654 56777777777777
Q ss_pred eeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccCCcccccCCcccccCCCCc
Q 000568 1232 LTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGT 1311 (1416)
Q Consensus 1232 L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 1311 (1416)
||+++|++.... +| +.|-.+..|+.|.+++| ..+.+|.+.
T Consensus 107 ldltynnl~e~~------lp------------------------gnff~m~tlralyl~dn--dfe~lp~dv-------- 146 (264)
T KOG0617|consen 107 LDLTYNNLNENS------LP------------------------GNFFYMTTLRALYLGDN--DFEILPPDV-------- 146 (264)
T ss_pred hhcccccccccc------CC------------------------cchhHHHHHHHHHhcCC--CcccCChhh--------
Confidence 777777554321 11 11333334444444443 223333332
Q ss_pred CcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCC
Q 000568 1312 TLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPE 1359 (1416)
Q Consensus 1312 ~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 1359 (1416)
..+++|+.|.+.+ +.+-++|..++.+..|++|++.+|+ ++.+|+
T Consensus 147 --g~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgnr-l~vlpp 190 (264)
T KOG0617|consen 147 --GKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNR-LTVLPP 190 (264)
T ss_pred --hhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccce-eeecCh
Confidence 2444555555554 5777888888888999999999987 777765
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-12 Score=149.62 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=19.9
Q ss_pred CCcceEEEccccCCCc----CcccccCcCccceeeeecCCCCC
Q 000568 1203 AKLTRLEISECERLEA----LPRGLRNLTCLQHLTIGDVLSPE 1241 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~ls~n~~~~ 1241 (1416)
++|++|++++|.+... ++..+..+++|++|++++|.+.+
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 3555555555554322 22334445566666666665543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-08 Score=119.93 Aligned_cols=301 Identities=12% Similarity=0.062 Sum_probs=172.2
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc-ccc---CcEEEEEecCCcCHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ-DHF---DLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~ 264 (1416)
+..++||++++++|..++...-. +.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 34799999999999999864221 2234678999999999999999999753211 111 13567887777777889
Q ss_pred HHHHHHHhc---CCCC-CCCCHHHHHHHHHHHhc--cccEEEEeccccccC---hhhHhhhcccc-ccCC--CCcEEEEE
Q 000568 265 TKTILRCIT---KQTI-DDSDLNLLQEELNKQLS--RKKFLLVLDDVWNEN---YNDWVDMSRPL-EAGA--PGSKIIVT 332 (1416)
Q Consensus 265 ~~~il~~l~---~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---~~~~~~~~~~l-~~~~--~gs~iivT 332 (1416)
+..++.++. .... ...+..+....+.+.+. +++++||||+++.-. ......+.... .... ....+|++
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999884 2211 12244555556666553 567899999997652 11122222211 1111 23344555
Q ss_pred ccchHHHHhhC-------CCCeeeCCCCChhhHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHhcCCChHHH-HHHHHHh
Q 000568 333 TRNQEVVAIMG-------TAPAYQLKRLSTDDCLSVFTQHSLD-SRDFSSNKSLEEIGKKIVIKCNGLPLAA-KTLGGLL 403 (1416)
Q Consensus 333 tR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~glPLai-~~~~~~l 403 (1416)
+........+. ....+.+++++.++..+++..++.. .......++..+...+++....|.|-.+ .++-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54433221111 1246889999999999999988631 1111223444455556777778888443 3322211
Q ss_pred --c--c-C--CCcchHHHHHhhcccCCCCCccCchhHHHHHHhCCChhHHHHHhHhccC--CCCcccCHHHHHHHH--HH
Q 000568 404 --R--G-K--HGPSDWEDVLNSNIWDLPEDRCGILPALRVSYYYLSPPLKQCFAYCSLL--PKDYEFEEEEIILLW--IA 472 (1416)
Q Consensus 404 --~--~-~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f--p~~~~i~~~~li~~w--~a 472 (1416)
. . . -+.++.+.+.+.. -.....-++..||.+.|..+..+... .++..+....+...+ ++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 1 1 1233333333321 11234456789999988766555421 133445666665533 12
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHHhCCccccc
Q 000568 473 EGFLDHEDRDEEKEELGHQFFQELCSRSFFEKS 505 (1416)
Q Consensus 473 ~g~i~~~~~~~~~e~~~~~~~~~L~~~sll~~~ 505 (1416)
+.+-.. ...+.....++..|...|++...
T Consensus 322 ~~~~~~----~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDIGVD----PLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HhcCCC----CCcHHHHHHHHHHHHhcCCeEEE
Confidence 211111 11224466789999999999874
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-11 Score=139.53 Aligned_cols=235 Identities=18% Similarity=0.102 Sum_probs=127.7
Q ss_pred cCccEEEeecCCCCc----cccccccCCCCcceEEEccCCCcc------ccC-CCCCCCCccEEeEccCCCCCcCchhhh
Q 000568 966 CKLEYLGLSYCQGLV----TLPQSLLNLSSLREIYIRSCSSLV------SFP-EVALPSKLRLITIWDCEALKSLPEAWM 1034 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~------~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~ 1034 (1416)
.+|+.|++++|.+.. .++..+...++|++|+++++.... .++ .+..+++|+.|++++|.+....+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 458888888887643 244556677778888888775541 111 233466777777777776544433321
Q ss_pred --cCCCCCcCeeEEccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCccccc
Q 000568 1035 --CETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLF 1112 (1416)
Q Consensus 1035 --~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~ 1112 (1416)
... ++|+.|++++|..-. .. .+
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~-~~---~~--------------------------------------------------- 126 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGD-RG---LR--------------------------------------------------- 126 (319)
T ss_pred HHhcc-CcccEEEeeCCccch-HH---HH---------------------------------------------------
Confidence 012 347777777653110 00 00
Q ss_pred ccCCCcchhhccccCCCCCCccEEEEecCCchh----hhHHhhccCCcccEEeeccCCCccc----ccccccCCCCccee
Q 000568 1113 SKNGLPATLESLEVGNLPQSLKFLDVWECPKLE----SIAERLNNNTSLEVIDIGNCENLKI----LPSGLHNLCQLQRI 1184 (1416)
Q Consensus 1113 ~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L 1184 (1416)
.+. ..+..++++|+.|++++|.+.+ .++..+..+++|++|++++|.+.+. ++..+..+++|+.|
T Consensus 127 -------~l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L 198 (319)
T cd00116 127 -------LLA-KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198 (319)
T ss_pred -------HHH-HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEE
Confidence 000 0111222367777777777662 3344566667777777777776531 22334455677777
Q ss_pred eeccCCCc----ccccCCCCCCCCcceEEEccccCCCcCccccc-----CcCccceeeeecCCCCCCCCC----CCCCCC
Q 000568 1185 SIWCCGNL----VSFSEGGLPCAKLTRLEISECERLEALPRGLR-----NLTCLQHLTIGDVLSPERDPE----DEDRLP 1251 (1416)
Q Consensus 1185 ~L~~~~~l----~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~-----~l~~L~~L~ls~n~~~~~~~~----~~~~l~ 1251 (1416)
++++|... ..+......+++|++|++++|.+.......+. ..+.|++|++++|.+++.... .+..+
T Consensus 199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~- 277 (319)
T cd00116 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK- 277 (319)
T ss_pred eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-
Confidence 77766432 11222222356788888888776642211111 236778888888766532111 12223
Q ss_pred CCcceeEecCCCCC
Q 000568 1252 TNLHSLNIDNMKSW 1265 (1416)
Q Consensus 1252 ~~L~~L~l~~~~~l 1265 (1416)
++|+.+++++|..-
T Consensus 278 ~~L~~l~l~~N~l~ 291 (319)
T cd00116 278 ESLLELDLRGNKFG 291 (319)
T ss_pred CCccEEECCCCCCc
Confidence 36777777776543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=114.85 Aligned_cols=182 Identities=19% Similarity=0.133 Sum_probs=113.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ---- 292 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~---- 292 (1416)
..++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..+++..+...++.... ..+.......+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 4588999999999999999999854321 11 12233 23345677888888888865432 22333333333332
Q ss_pred -hccccEEEEeccccccChhhHhhhccccc---cCCCCcEEEEEccchHHHHhhC----------CCCeeeCCCCChhhH
Q 000568 293 -LSRKKFLLVLDDVWNENYNDWVDMSRPLE---AGAPGSKIIVTTRNQEVVAIMG----------TAPAYQLKRLSTDDC 358 (1416)
Q Consensus 293 -l~~kr~LlVlDdv~~~~~~~~~~~~~~l~---~~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~~ 358 (1416)
..+++.+||+||+|......++.+..... .......|++|.... ....+. ....+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 25788999999998876555665543221 112223445555432 221111 124578999999999
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 359 LSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 359 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
.+++...+...+......--.+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764322111111124677889999999999999998876
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-10 Score=145.22 Aligned_cols=235 Identities=22% Similarity=0.232 Sum_probs=136.2
Q ss_pred ccceeeccCCC--ccccCcc-ccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCcccC
Q 000568 606 VFTVLNLSRTN--IRNLPES-ITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLC 682 (1416)
Q Consensus 606 ~L~~L~Ls~~~--i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 682 (1416)
.|+.|-+.+|. +..++.. |..++.|++|||++|..+.++|..|+.|.+||+|+++++. +..+|.++++|+.|++|.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheec
Confidence 57777777775 6777655 7779999999999999999999999999999999999998 999999999999999994
Q ss_pred ceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhccCCCC
Q 000568 683 NFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPH 762 (1416)
Q Consensus 683 ~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 762 (1416)
....+..... ...+..+.+|+.|.+.+... ......+..+..+
T Consensus 625 l~~~~~l~~~------------------------------~~i~~~L~~Lr~L~l~~s~~-------~~~~~~l~el~~L 667 (889)
T KOG4658|consen 625 LEVTGRLESI------------------------------PGILLELQSLRVLRLPRSAL-------SNDKLLLKELENL 667 (889)
T ss_pred cccccccccc------------------------------cchhhhcccccEEEeecccc-------ccchhhHHhhhcc
Confidence 4333221100 01122345555555543220 1111223334444
Q ss_pred CCcceEEEeeeCCCCCCcCcCCCCCCCc----cEEEEeccCCCCCCCCCCCcCCcceeEecCCCCcEEcCccccCCCCCC
Q 000568 763 QNLEEFCINGYRGTKFPIWLGDSSLSKL----VTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPI 838 (1416)
Q Consensus 763 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L----~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 838 (1416)
++|+.+.+..... .+-.-+. .+..| +.+.+.+|......+.++.+.+|+.|.+.+|...+........ ....
T Consensus 668 e~L~~ls~~~~s~-~~~e~l~--~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-~~~~ 743 (889)
T KOG4658|consen 668 EHLENLSITISSV-LLLEDLL--GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES-LIVL 743 (889)
T ss_pred cchhhheeecchh-HhHhhhh--hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc-cchh
Confidence 5555555433222 0000000 11222 2333334444555667788888888888887654332211100 0011
Q ss_pred -CCCCccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCcccCCC
Q 000568 839 -PFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLP 888 (1416)
Q Consensus 839 -~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p 888 (1416)
.|+++..+.+..+....... .....|+|+.|.+..|+.+...+|
T Consensus 744 ~~f~~l~~~~~~~~~~~r~l~------~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 744 LCFPNLSKVSILNCHMLRDLT------WLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hhHHHHHHHHhhccccccccc------hhhccCcccEEEEecccccccCCC
Confidence 14555555555443332211 123457777777777776664444
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=120.23 Aligned_cols=195 Identities=19% Similarity=0.194 Sum_probs=100.0
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH---
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI--- 268 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 268 (1416)
|+||+.|+++|.+++... ..+.+.|+|+.|+|||+|++++.+..+.. .+ .++|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~-~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNES-SLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhh-HHHHHHHH
Confidence 789999999999998654 24789999999999999999999844211 12 34444443333221 11111
Q ss_pred -----------HHHhcCCCC------CCCCHHHHHHHHHHHhc--cccEEEEeccccccC------hhhHhhhcccccc-
Q 000568 269 -----------LRCITKQTI------DDSDLNLLQEELNKQLS--RKKFLLVLDDVWNEN------YNDWVDMSRPLEA- 322 (1416)
Q Consensus 269 -----------l~~l~~~~~------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~~~~~l~~- 322 (1416)
...+..... ...........+.+.+. +++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111111110 01122222333333332 346999999996653 0111122222222
Q ss_pred -CCCCcEEEEEccchHHHHh--------hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 323 -GAPGSKIIVTTRNQEVVAI--------MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 323 -~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
......+|++.....+... .+....+.+++++.+++++++...+-.. . .. +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCH
Confidence 1233344444444434333 1223459999999999999999875332 1 11 112345578999999999
Q ss_pred HHHHH
Q 000568 394 LAAKT 398 (1416)
Q Consensus 394 Lai~~ 398 (1416)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-09 Score=118.78 Aligned_cols=276 Identities=16% Similarity=0.155 Sum_probs=146.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+|+|++..++.+..++..... .....+.+.|+|++|+|||++|+.+++.... .+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEecc-cccChHHHHHHH
Confidence 4699999999999888754211 1234567889999999999999999985322 11 112211 111122233333
Q ss_pred HHhcCCCC-CCCCH----HHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhh--
Q 000568 270 RCITKQTI-DDSDL----NLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIM-- 342 (1416)
Q Consensus 270 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~-- 342 (1416)
..+..... -.++. ....+.+...+.+.+..+|+|+..... .+...++ +.+-|..|+|...+...+
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHHH
Confidence 33321110 00000 112223344444555555555543221 0111111 234566677754433222
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhcccC
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWD 422 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 422 (1416)
.....+++++++.++..+++.+.+......- + .+.+..|++.|+|.|-.+..+...+. .|...... ..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~-~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEI-D---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCc-C---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CC
Confidence 1235689999999999999998875433222 2 34677899999999965554444321 12111100 00
Q ss_pred CCC-CccCchhHHHHHHhCCChhHHHHHh-HhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHH-HHHhC
Q 000568 423 LPE-DRCGILPALRVSYYYLSPPLKQCFA-YCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQ-ELCSR 499 (1416)
Q Consensus 423 ~~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~-~L~~~ 499 (1416)
... ........+...|..|++..+..+. ....|+.+ .+..+.+.... | . ...+ +++.++ .|+++
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---~--~~~~----~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---E--ERDT----IEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---C--Ccch----HHHHhhHHHHHc
Confidence 000 0012233445667788888777775 66777665 45555443322 1 1 1122 333455 79999
Q ss_pred Cccccc
Q 000568 500 SFFEKS 505 (1416)
Q Consensus 500 sll~~~ 505 (1416)
+|++..
T Consensus 305 ~li~~~ 310 (328)
T PRK00080 305 GFIQRT 310 (328)
T ss_pred CCcccC
Confidence 999754
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-08 Score=116.09 Aligned_cols=280 Identities=19% Similarity=0.239 Sum_probs=178.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCCC-------------CC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQTID-------------DS 280 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~-------------~~ 280 (1416)
.+.|.+.|..++|.||||++-+.+. +. ..=..+.|.+.++. .+.......++..++.-... ..
T Consensus 35 ~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~ 111 (894)
T COG2909 35 NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYV 111 (894)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccc
Confidence 3589999999999999999998875 11 12245899998765 56778888888888743221 22
Q ss_pred CHHHHHHHHHHHhc--cccEEEEeccccccChhhHhh-hccccccCCCCcEEEEEccchHHHHhh--C-CCCeeeC----
Q 000568 281 DLNLLQEELNKQLS--RKKFLLVLDDVWNENYNDWVD-MSRPLEAGAPGSKIIVTTRNQEVVAIM--G-TAPAYQL---- 350 (1416)
Q Consensus 281 ~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~-~~~~l~~~~~gs~iivTtR~~~v~~~~--~-~~~~~~l---- 350 (1416)
+...+.+.+...+. .++..+||||---........ +...+.....+-.+|||||.+.-.... . .....++
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~ 191 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEE 191 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHh
Confidence 33344444444333 457999999985433223333 333334455678999999986321110 0 1122333
Q ss_pred CCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhcccCCCCCccCc
Q 000568 351 KRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPEDRCGI 430 (1416)
Q Consensus 351 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i 430 (1416)
=.++.+|+-++|.......-+ +..++.+.+..+|.+-|+..++=.++.+.+.+.-...+. ...+.+
T Consensus 192 Lrf~~eE~~~fl~~~~~l~Ld-------~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls-------G~~~~l 257 (894)
T COG2909 192 LRFDTEEAAAFLNDRGSLPLD-------AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS-------GAASHL 257 (894)
T ss_pred hcCChHHHHHHHHHcCCCCCC-------hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc-------chHHHH
Confidence 358899999999887522111 234566999999999999999988884432222111111 111112
Q ss_pred hh-HHHHHHhCCChhHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHHHHHhCCccc-cccCC
Q 000568 431 LP-ALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQELCSRSFFE-KSSND 508 (1416)
Q Consensus 431 ~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~L~~~sll~-~~~~~ 508 (1416)
.. ...--++.||+++|.-++-||+++. + .+.|+..- +-++-+...+++|.+++|+- +-++.
T Consensus 258 ~dYL~eeVld~Lp~~l~~FLl~~svl~~---f-~~eL~~~L-------------tg~~ng~amLe~L~~~gLFl~~Ldd~ 320 (894)
T COG2909 258 SDYLVEEVLDRLPPELRDFLLQTSVLSR---F-NDELCNAL-------------TGEENGQAMLEELERRGLFLQRLDDE 320 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHHH---h-hHHHHHHH-------------hcCCcHHHHHHHHHhCCCceeeecCC
Confidence 22 1234578999999999999999854 1 23333321 11233566799999999975 44566
Q ss_pred CCceEehHHHHHHHHHhccC
Q 000568 509 TSKFVMHDLVNDLARWAAGE 528 (1416)
Q Consensus 509 ~~~~~mHdlv~~~~~~~~~~ 528 (1416)
..+|+.|.++.+|.+.....
T Consensus 321 ~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 321 GQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CceeehhHHHHHHHHhhhcc
Confidence 78999999999998866543
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-07 Score=110.58 Aligned_cols=214 Identities=13% Similarity=0.087 Sum_probs=127.8
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccc---ccccC--cEEEEEecCCcCHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV---QDHFD--LKAWTCVSNDFDVIR 263 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 263 (1416)
+..+.|||+|+++|...|...-. +.....++.|+|++|.|||++++.|...... +.... .+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45789999999999998865332 2233467889999999999999999874321 11122 356777777677888
Q ss_pred HHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhc---cccEEEEeccccccChhhHhhhccccc-cCCCCcEEEE--Eccch
Q 000568 264 LTKTILRCITKQTI-DDSDLNLLQEELNKQLS---RKKFLLVLDDVWNENYNDWVDMSRPLE-AGAPGSKIIV--TTRNQ 336 (1416)
Q Consensus 264 ~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~~~~~l~-~~~~gs~iiv--TtR~~ 336 (1416)
++..|.+++..... ......+....+...+. ....+||||+|+.-....-+.+...+. ....+++|+| ++...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 88888888854432 22233344444444442 223589999996532111122222222 1224556554 34321
Q ss_pred H--------HHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 000568 337 E--------VVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLR 404 (1416)
Q Consensus 337 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 404 (1416)
+ +...++ ...+...+++.++-.+++..++......-.+..++-+|+.++...|-.-.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 1 112222 234677999999999999999854322223344455555555555556677766655543
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=105.59 Aligned_cols=144 Identities=21% Similarity=0.257 Sum_probs=88.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccc----cCcEEEEEecCCcCHH---HHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDH----FDLKAWTCVSNDFDVI---RLTKTILRCITKQTIDDSDLNLLQEELN 290 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 290 (1416)
|++.|+|.+|+||||+++.++........ +...+|+......... .+...+..+..... .........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~-- 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQE-- 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHH--
Confidence 58999999999999999999986433332 4456677665543322 33333333332211 111111111
Q ss_pred HHhccccEEEEeccccccChh-------hHhhhcccccc--CCCCcEEEEEccchHH---HHhhCCCCeeeCCCCChhhH
Q 000568 291 KQLSRKKFLLVLDDVWNENYN-------DWVDMSRPLEA--GAPGSKIIVTTRNQEV---VAIMGTAPAYQLKRLSTDDC 358 (1416)
Q Consensus 291 ~~l~~kr~LlVlDdv~~~~~~-------~~~~~~~~l~~--~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 358 (1416)
..-..++++||+|++++.... .+..+...+.. ..++.++|||+|.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 112578999999999765321 12222222222 2468999999998765 33344456899999999999
Q ss_pred HHHHHHhh
Q 000568 359 LSVFTQHS 366 (1416)
Q Consensus 359 ~~lf~~~~ 366 (1416)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997764
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-08 Score=113.08 Aligned_cols=275 Identities=14% Similarity=0.123 Sum_probs=147.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+|||++..++++..++..... .......+.++|++|+|||+||+.+++.... .+ ..+........ ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchhcCc-hhHHHHH
Confidence 3689999999999998864221 1234566889999999999999999884322 11 11221111111 1222223
Q ss_pred HHhcCCCC------CCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhh-
Q 000568 270 RCITKQTI------DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIM- 342 (1416)
Q Consensus 270 ~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~- 342 (1416)
..+..... +... ......+...+.+.+..+|+|+..... . +...++ +.+-|.+||+...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~--~---~~~~~~---~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSAR--S---VRLDLP---PFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccc--c---eeecCC---CeEEEEecCCccccCHHHH
Confidence 33322110 0001 122334455555556666666653331 1 111111 245566677765443322
Q ss_pred -CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhccc
Q 000568 343 -GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIW 421 (1416)
Q Consensus 343 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~ 421 (1416)
.....+++++++.++..+++.+.+..... ..+ .+....|++.|+|.|-.+..++..+ |.........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~ 215 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQK 215 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCC
Confidence 12346899999999999999988753322 122 3456779999999997665555432 1111000000
Q ss_pred CCCC-CccCchhHHHHHHhCCChhHHHHHh-HhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHH-HHHh
Q 000568 422 DLPE-DRCGILPALRVSYYYLSPPLKQCFA-YCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQ-ELCS 498 (1416)
Q Consensus 422 ~~~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~-~L~~ 498 (1416)
.... ........+...|..++++.+..+. .++.++.+ .+..+.+.... |. ....++..++ .|++
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQ 282 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHH
Confidence 0000 0011222245567888888877666 55666543 34444333322 11 1123555677 6999
Q ss_pred CCccccc
Q 000568 499 RSFFEKS 505 (1416)
Q Consensus 499 ~sll~~~ 505 (1416)
++|+...
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999753
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-09 Score=107.27 Aligned_cols=127 Identities=22% Similarity=0.207 Sum_probs=96.6
Q ss_pred CCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEE
Q 000568 1131 QSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEI 1210 (1416)
Q Consensus 1131 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l 1210 (1416)
+.|++|+|++|.+. .+.+...-.|.++.|++|+|.+...- .+..+++|+.|+|++ +.+..+......+.++++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeeccc-chhHhhhhhHhhhcCEeeeeh
Confidence 47999999999776 45667788899999999999977643 488899999999985 455555444445789999999
Q ss_pred ccccCCCcCcccccCcCccceeeeecCCCCCCCC-CCCCCCCCCcceeEecCCCC
Q 000568 1211 SECERLEALPRGLRNLTCLQHLTIGDVLSPERDP-EDEDRLPTNLHSLNIDNMKS 1264 (1416)
Q Consensus 1211 ~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~-~~~~~l~~~L~~L~l~~~~~ 1264 (1416)
++|.+. .+ ..++.+-+|..||+++|+|..+.. ..++.+| .|+.+.+.+|+.
T Consensus 360 a~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPL 411 (490)
T ss_pred hhhhHh-hh-hhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCc
Confidence 999875 33 467888999999999998876643 2355565 666666666663
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-09 Score=114.72 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=102.4
Q ss_pred CccEEEEecCCchhhhH-HhhccCCcccEEeeccCCCcccc--cccccCCCCcceeeeccCCCcccccCCC--CCCCCcc
Q 000568 1132 SLKFLDVWECPKLESIA-ERLNNNTSLEVIDIGNCENLKIL--PSGLHNLCQLQRISIWCCGNLVSFSEGG--LPCAKLT 1206 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~--~~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~~~L~ 1206 (1416)
+|+...|.+++...... .....|++++.||||+|-+..-. -.....+++|+.|+|+.|... .+.... ..++.|+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~-~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS-NFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc-CCccccchhhhhhhh
Confidence 45555555544321110 23445666666666666544321 122345666666666543221 111111 1256777
Q ss_pred eEEEccccCCC-cCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcc
Q 000568 1207 RLEISECERLE-ALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQ 1285 (1416)
Q Consensus 1207 ~L~l~~n~~~~-~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~ 1285 (1416)
.|.|++|.++. .+-..+..+|+|+.|++..|....+..... ..+..|+.|+|++|+.+..- .. .....++.|+
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~-~i~~~L~~LdLs~N~li~~~-~~----~~~~~l~~L~ 274 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST-KILQTLQELDLSNNNLIDFD-QG----YKVGTLPGLN 274 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh-hhhhHHhhccccCCcccccc-cc----cccccccchh
Confidence 77777777762 223344567788888888775222222222 33457888888877655422 10 1256677777
Q ss_pred eEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccc--cCccccCCcCcEEecCCC
Q 000568 1286 QLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLS--SSIFYHQNLTKLKLCNCP 1352 (1416)
Q Consensus 1286 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~ 1352 (1416)
.|+++.+...-..+|+-. .+.-....++|++|.+.. |++...+ ..+..+++|+.|.+..++
T Consensus 275 ~Lnls~tgi~si~~~d~~-----s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVE-----SLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhccccCcchhcCCCcc-----chhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccccc
Confidence 777777532222222110 000012345566666665 3443332 123333666666655544
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-07 Score=98.35 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=96.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
.+.+.++|++|+|||+||+++++.. ......+.|+++.... ....+ +.+.++ +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~---~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQ---YFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhh---hhhHH---------------------HHhhcc-c
Confidence 3678999999999999999999853 2223345666653210 00001 111112 2
Q ss_pred cEEEEeccccccC-hhhHhh-hcccccc-CCCCcEEEE-Eccc---------hHHHHhhCCCCeeeCCCCChhhHHHHHH
Q 000568 297 KFLLVLDDVWNEN-YNDWVD-MSRPLEA-GAPGSKIIV-TTRN---------QEVVAIMGTAPAYQLKRLSTDDCLSVFT 363 (1416)
Q Consensus 297 r~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 363 (1416)
.-+||+||+|... ...|+. +...+.. ...|..+|| |++. +.+...++....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998742 245553 3332322 123556654 4543 3566666666789999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 364 QHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
+.+....- ..+ +++.+-|++++.|-.-++..+-..+
T Consensus 172 ~~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI-ELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98864432 222 3566779999998776665544433
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-08 Score=109.24 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=16.9
Q ss_pred cCccEEEeecCCCCcccc--ccccCCCCcceEEEccC
Q 000568 966 CKLEYLGLSYCQGLVTLP--QSLLNLSSLREIYIRSC 1000 (1416)
Q Consensus 966 ~~L~~L~Ls~n~~~~~~~--~~l~~l~~L~~L~L~~n 1000 (1416)
.+|+.+.|.++.. +..+ .....|++++.|+|++|
T Consensus 121 kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~N 156 (505)
T KOG3207|consen 121 KKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRN 156 (505)
T ss_pred HhhhheeecCccc-cccchhhhhhhCCcceeecchhh
Confidence 3555556655544 2222 23445555555555555
|
|
| >COG3899 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-06 Score=108.86 Aligned_cols=311 Identities=14% Similarity=0.147 Sum_probs=176.5
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccc-ccccCcEEEEEecCCc---CHHHHHHH
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV-QDHFDLKAWTCVSNDF---DVIRLTKT 267 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~---~~~~~~~~ 267 (1416)
++||+.+.+.|...+... ..+...++.+.|..|||||+++++|..-..- ++.|-...+-...... .....+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 689999999999988654 3456779999999999999999999874221 1222111111122221 22344455
Q ss_pred HHHHhcCCC-------------------C----------------------CCCCHHH-----HHHHHHHHh-ccccEEE
Q 000568 268 ILRCITKQT-------------------I----------------------DDSDLNL-----LQEELNKQL-SRKKFLL 300 (1416)
Q Consensus 268 il~~l~~~~-------------------~----------------------~~~~~~~-----~~~~l~~~l-~~kr~Ll 300 (1416)
++.++.... . ....... .+..+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 554442110 0 0000000 111222222 3569999
Q ss_pred EeccccccChhhHhhhccccccCC------CCcEEEEEccch--HHHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCC
Q 000568 301 VLDDVWNENYNDWVDMSRPLEAGA------PGSKIIVTTRNQ--EVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDF 372 (1416)
Q Consensus 301 VlDdv~~~~~~~~~~~~~~l~~~~------~gs~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 372 (1416)
|+||+...+....+-+........ ...-.+.|.+.. .+.........+.|.||+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 999995543333322221111110 111223333332 22222233467999999999999999887643222
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHHHHHhccC------CCcchHHHHHhhcccCCCCCccCchhHHHHHHhCCChhHH
Q 000568 373 SSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGK------HGPSDWEDVLNSNIWDLPEDRCGILPALRVSYYYLSPPLK 446 (1416)
Q Consensus 373 ~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 446 (1416)
. ..+....|+++..|+|+.+..+-..+... .+...|..-..+.. ..... +.+...+..-.+.||...|
T Consensus 238 ~----~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-~~~~~-~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 238 L----PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-ILATT-DAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred c----cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-Cchhh-HHHHHHHHHHHhcCCHHHH
Confidence 1 24566779999999999999999988764 23344544332211 11111 2245568888999999999
Q ss_pred HHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHHHHHhCCccccc-----cCCCC---ceEehHHH
Q 000568 447 QCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQELCSRSFFEKS-----SNDTS---KFVMHDLV 518 (1416)
Q Consensus 447 ~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~L~~~sll~~~-----~~~~~---~~~mHdlv 518 (1416)
......|++... |+.+.|...|-. ..+..+....+.|....++-.+ ..... +-..||.+
T Consensus 312 ~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 999999999654 456666555521 2234455555555544444211 11111 22579999
Q ss_pred HHHHHHh
Q 000568 519 NDLARWA 525 (1416)
Q Consensus 519 ~~~~~~~ 525 (1416)
++.|...
T Consensus 379 qqaaY~~ 385 (849)
T COG3899 379 QQAAYNL 385 (849)
T ss_pred HHHHhcc
Confidence 9887643
|
|
| >COG3903 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=102.44 Aligned_cols=293 Identities=16% Similarity=0.170 Sum_probs=185.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccC-cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD-LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
..+-+.++|.|||||||++-.+.. ++..|. .+.++....-.+...+.-.+...++-.... .+.....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 358899999999999999977765 455674 455566665556666666666656644322 2334455667778
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhhCCCCeeeCCCCChh-hHHHHHHHhhcCCC-CC
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTD-DCLSVFTQHSLDSR-DF 372 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~-~~ 372 (1416)
++|.++|+||..+. .+.-......+..+...-.|+.|+|..-. ..+.....+..|+.. ++.++|...+.... ..
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998442 11222333444455566678888887532 234456778888875 78999887764322 11
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCcchHHHHHhhcccC-------CCCCccCchhHHHHHHhCCChhH
Q 000568 373 SSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWD-------LPEDRCGILPALRVSYYYLSPPL 445 (1416)
Q Consensus 373 ~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~-------~~~~~~~i~~~l~~sy~~L~~~~ 445 (1416)
.-...-.....+|.++..|.|++|..+++..+.-. ..+-..-++..... .........+.+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11222345677799999999999999999987653 22222222211111 11123457789999999999999
Q ss_pred HHHHhHhccCCCCcccCHHHHHHHHHHcCCCCCCchhhHHHHHHHHHHHHHHhCCcccccc-CCCCceEehHHHHHHHHH
Q 000568 446 KQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQELCSRSFFEKSS-NDTSKFVMHDLVNDLARW 524 (1416)
Q Consensus 446 k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~~~~L~~~sll~~~~-~~~~~~~mHdlv~~~~~~ 524 (1416)
+--|.-++.|...+.-. ...|.+-|-........ ...-+..+++++++...+ .+...|+.-+-++.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~-----~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYL-----VLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccccchHH-----HHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998876543 33455544332111111 222366788888876533 234467777777777766
Q ss_pred hccC
Q 000568 525 AAGE 528 (1416)
Q Consensus 525 ~~~~ 528 (1416)
+.++
T Consensus 313 eL~r 316 (414)
T COG3903 313 ELHR 316 (414)
T ss_pred HHHh
Confidence 5543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-09 Score=114.48 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCcCCcceeEecCCCCcEEcCccccCCCCCCCCCCccEEeccCCcccccccccCCcccccCCCcccEEeecCCcCccc
Q 000568 808 GQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRG 885 (1416)
Q Consensus 808 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 885 (1416)
.+.|+++.|.+.+|..++.......+ ...++|+.+.+..|..|....-... ...+++|++|+++.|+.+++
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~l---a~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYL---AEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHH---HHhhhhHHHhhhccCchhhc
Confidence 34566666666666544443221111 1156666666666655544332211 35688999999999988875
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.4e-07 Score=100.75 Aligned_cols=98 Identities=23% Similarity=0.435 Sum_probs=68.0
Q ss_pred HHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccccCcC
Q 000568 1148 AERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLT 1227 (1416)
Q Consensus 1148 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~ 1227 (1416)
...+..+.++..|++++|.+. .+|. -.++|++|.+++|+.+..+|... | ++|+.|++++|.....+| +
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P-~nLe~L~Ls~Cs~L~sLP------~ 112 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI-P-EGLEKLTVCHCPEISGLP------E 112 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh-h-hhhhheEccCcccccccc------c
Confidence 334566789999999999644 3452 23579999999988888887533 3 689999999885554555 3
Q ss_pred ccceeeeecCCCCCCCCCCCCCCCCCcceeEecCC
Q 000568 1228 CLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNM 1262 (1416)
Q Consensus 1228 ~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~ 1262 (1416)
+|+.|+++++.... +..+|++|+.|.+.++
T Consensus 113 sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 113 SVRSLEIKGSATDS-----IKNVPNGLTSLSINSY 142 (426)
T ss_pred ccceEEeCCCCCcc-----cccCcchHhheecccc
Confidence 57777777654432 3457778888887543
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=103.57 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=104.4
Q ss_pred eeeeehhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 191 KVYGRETEKKE---IVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 191 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
++||++..+.. +.+++... ....+.++|++|+||||+|+.+++.. ... |+.++.........++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHHHH
Confidence 58888877655 77776432 34577889999999999999998743 222 2222221111111222
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE--EccchH--HHHh-
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV--TTRNQE--VVAI- 341 (1416)
Q Consensus 268 il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~--v~~~- 341 (1416)
+++ ..... ..+++.+|++|+++.-.....+.+...+.. |..++| ||.+.. +...
T Consensus 80 ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 222 11111 145788999999987655556666554432 444544 344332 1111
Q ss_pred hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHH
Q 000568 342 MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGL 402 (1416)
Q Consensus 342 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 402 (1416)
......+.+.+++.++.+.++.+.+....... ..--.+..+.|++.|+|.+..+..+...
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 12236789999999999999988653211100 0111355677999999999766544433
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-06 Score=94.03 Aligned_cols=155 Identities=25% Similarity=0.291 Sum_probs=92.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
.+.-...||++|+||||||+.+... ....| ..++...+-.+-++++++.- -+....+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i~e~a----------------~~~~~~g 103 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREIIEEA----------------RKNRLLG 103 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHHHHHH----------------HHHHhcC
Confidence 4666779999999999999999873 33333 33444333333333333321 1223358
Q ss_pred ccEEEEeccccccChhhHhhhccccccCCCCcEEEE--EccchHHH---HhhCCCCeeeCCCCChhhHHHHHHHhhcCCC
Q 000568 296 KKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV--TTRNQEVV---AIMGTAPAYQLKRLSTDDCLSVFTQHSLDSR 370 (1416)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 370 (1416)
+|.+|++|.|..-+..+.+.+ ||.-..|.-|+| ||-++... .......++++++|+.++-.+++.+.+....
T Consensus 104 r~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 899999999965444444444 344456777776 66665321 1123447899999999999999988432211
Q ss_pred CCCC--ChhH-HHHHHHHHHhcCCChHHH
Q 000568 371 DFSS--NKSL-EEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 371 ~~~~--~~~~-~~~~~~i~~~~~glPLai 396 (1416)
..-. ...+ ++...-+++.++|---++
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 1000 0111 235556888888865443
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-07 Score=88.37 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=82.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccc---cccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQ---DHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL 293 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 293 (1416)
.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...++.+++.......+.+++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999999999853211 0023467999888889999999999999987666567778888888888
Q ss_pred ccccE-EEEecccccc-ChhhHhhhccccccCCCCcEEEEEccc
Q 000568 294 SRKKF-LLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRN 335 (1416)
Q Consensus 294 ~~kr~-LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~ 335 (1416)
...+. +||+|+++.- +...++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76655 9999999765 5444444533332 566777777665
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.4e-07 Score=99.42 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=27.2
Q ss_pred CCcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCC
Q 000568 1203 AKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNM 1262 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~ 1262 (1416)
++|++|++++|... .+|..+. .+|+.|+++.|..... ......+|+++ .|++.+|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sL-eI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTW-NISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccc-cCccccccccc-Eechhhh
Confidence 46666666666644 2333332 4666666665532211 11223455555 6666655
|
|
| >PTZ00202 tuzin; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-05 Score=87.71 Aligned_cols=166 Identities=12% Similarity=0.127 Sum_probs=101.6
Q ss_pred ccCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 187 VNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.+.+.|+||+++..++...|...+. ...+++.|.|++|+|||||++.+..... ...++.-.. +..++++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLR 327 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHH
Confidence 4466899999999999999865432 2457999999999999999999986432 123332223 6799999
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh-----c-cccEEEEeccccccC-hhhHhhhccccccCCCCcEEEEEccchHHH
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQL-----S-RKKFLLVLDDVWNEN-YNDWVDMSRPLEAGAPGSKIIVTTRNQEVV 339 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~-~~~~~~~~~~l~~~~~gs~iivTtR~~~v~ 339 (1416)
.++.+++.+.. ....++.+.|.+.+ . +++.+||+-=-.-.+ ..-+.+. ..+.....-|+|++---.+.+-
T Consensus 328 ~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 328 SVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcc
Confidence 99999997432 22234444444333 2 566666654221111 0112221 1233344567888765544321
Q ss_pred Hhh---CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 340 AIM---GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 340 ~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
... ..-.-|-++.++.++|.++..+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111 111358899999999988876553
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=93.68 Aligned_cols=172 Identities=14% Similarity=0.151 Sum_probs=101.3
Q ss_pred ehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcC
Q 000568 195 RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 195 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 274 (1416)
.+..++++.+++.. ...+.+.|+|++|+|||++|+.+++... ......++++++.-... ...+
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~~---~~~~------ 84 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQA---DPEV------ 84 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHHh---HHHH------
Confidence 44567777776532 2357889999999999999999987432 22334556655432110 0011
Q ss_pred CCCCCCCHHHHHHHHHHHhccccEEEEeccccccChh-hHh-hhcccccc-CCCCcEEEEEccchH---------HHHhh
Q 000568 275 QTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYN-DWV-DMSRPLEA-GAPGSKIIVTTRNQE---------VVAIM 342 (1416)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~-~~~~~l~~-~~~gs~iivTtR~~~---------v~~~~ 342 (1416)
...+.+ .-+||+||++..... .|. .+...+.. ...+.++|+|++... +...+
T Consensus 85 ---------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 85 ---------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ---------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 111222 238999999764322 232 33333322 123458889888532 22233
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
.....+++.++++++...++...+..... ..+ .+..+.|++.+.|.|..+.-+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL-QLP---DEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 33467999999999999988876532221 122 3455668888999998877665443
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.4e-06 Score=97.46 Aligned_cols=182 Identities=15% Similarity=0.177 Sum_probs=114.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-------------------cCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-------------------FDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 250 (1416)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+....... |..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 468999999999999985432 2456679999999999999988875322211 1112
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCC
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPG 326 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~g 326 (1416)
++++.+.. ...+++.+.+... ..++.-++|||+++..+...|+.++..+.....+
T Consensus 91 iEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22222111 1122222222211 1244558899999887767788888877665567
Q ss_pred cEEEEEccchH-HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHHHH
Q 000568 327 SKIIVTTRNQE-VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLGG 401 (1416)
Q Consensus 327 s~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~ 401 (1416)
.++|+||.+.+ +...+ .-...++++.++.++..+.+.+.+..++.... .+..+.|++.++|.. -|+.++-.
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78887777643 32111 12257999999999999999887643332111 345566999999865 45554333
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.3e-06 Score=93.45 Aligned_cols=179 Identities=18% Similarity=0.262 Sum_probs=117.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccc----ccccccCcEEEEEe-cCCcCHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH----RVQDHFDLKAWTCV-SNDFDVIRL 264 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 264 (1416)
.+++|.+..++.+..++..+. -.....++|+.|+||||+|+.++... ....|.|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357899999999999985432 34677899999999999999998742 12345665556542 22233322
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHH-Hh-h
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV-AI-M 342 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~-~~-~ 342 (1416)
.+++.+.+.... ..+++-++|+|+++.-+...++.+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 223333222111 12456678888887666678889988888777788888888665322 11 1
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
.....+++.++++++....+.+...+ .+ .+.++.++..++|.|..+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND-----IK---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHH
Confidence 22357999999999998888665421 11 23356789999999876543
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-07 Score=95.36 Aligned_cols=69 Identities=25% Similarity=0.383 Sum_probs=30.2
Q ss_pred cCCcCcEEecCCCCCCCCCCC---CCccccceeeecCChhhHHhhccCCCccc-cccCccceEEE-CCeecCcccccccc
Q 000568 1340 HQNLTKLKLCNCPKLKYFPEK---GLPASLLRLEISGCPLIEERYIKDGGQYR-HLLTYIPCIII-NGRPVDLDLKQRRI 1414 (1416)
Q Consensus 1340 ~~~L~~L~l~~~~~l~~l~~~---~~~~sL~~L~l~~cp~l~~~~~~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~~~~~ 1414 (1416)
+|+|+.|++++|. +.++... .-+++|+.|++.+||.-+. ..++ .-+.++|.+++ |+.+++..+|+.++
T Consensus 87 lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~------~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~ 159 (175)
T PF14580_consen 87 LPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK------KNYRLFVIYKLPSLKVLDGQDVTEEERQEAE 159 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS------TTHHHHHHHH-TT-SEETTEETTS-B-----
T ss_pred CCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch------hhHHHHHHHHcChhheeCCEEccHHHhcccc
Confidence 4677777777664 5555442 1246777888888876321 1222 23578999876 99999988887765
Q ss_pred c
Q 000568 1415 E 1415 (1416)
Q Consensus 1415 ~ 1415 (1416)
.
T Consensus 160 ~ 160 (175)
T PF14580_consen 160 K 160 (175)
T ss_dssp -
T ss_pred c
Confidence 4
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-08 Score=110.97 Aligned_cols=180 Identities=18% Similarity=0.161 Sum_probs=98.7
Q ss_pred CCcceEEEccccCCCcCc--ccccCcCccceeeeecCCCCCCCCCC---CCCCCCCcceeEecCCCCCcccccccCCCCC
Q 000568 1203 AKLTRLEISECERLEALP--RGLRNLTCLQHLTIGDVLSPERDPED---EDRLPTNLHSLNIDNMKSWKSFIEWGQGGGG 1277 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~~~~~p--~~l~~l~~L~~L~ls~n~~~~~~~~~---~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~ 1277 (1416)
+-+.++++.+|....... ..-..+..|+.|+.++| +.+.... +..-..+|+.|.+++|.+++...-.. .
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~--t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~----l 341 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC--TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM----L 341 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC--CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh----h
Confidence 345555555664332221 11123566777777776 2222222 12222477777777777655332110 0
Q ss_pred CCCCCCcceEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCccc-----ccCccccCCcCcEEecCCC
Q 000568 1278 LNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERL-----SSSIFYHQNLTKLKLCNCP 1352 (1416)
Q Consensus 1278 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~~~ 1352 (1416)
-.+.+.|+.+++.++....+. + +-..-...+.|+.|.+++|..++.. .........|..+.+++|+
T Consensus 342 ~rn~~~Le~l~~e~~~~~~d~-t--------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 342 GRNCPHLERLDLEECGLITDG-T--------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hcCChhhhhhcccccceehhh-h--------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 244567777777765332221 0 0001134677888888888766654 4444555789999999999
Q ss_pred CCCCCC--CCCCccccceeeecCChhhHHhhccCCCccccccCccceEEECCe
Q 000568 1353 KLKYFP--EKGLPASLLRLEISGCPLIEERYIKDGGQYRHLLTYIPCIIINGR 1403 (1416)
Q Consensus 1353 ~l~~l~--~~~~~~sL~~L~l~~cp~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 1403 (1416)
.++.-- .....++|+.+++.+|..+.+.-.+ ...+|.|++.+...
T Consensus 413 ~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 413 LITDATLEHLSICRNLERIELIDCQDVTKEAIS------RFATHLPNIKVHAY 459 (483)
T ss_pred CchHHHHHHHhhCcccceeeeechhhhhhhhhH------HHHhhCccceehhh
Confidence 765532 1233578999999998654332211 23457888876443
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.6e-06 Score=94.49 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=109.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc-------------------CcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF-------------------DLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-------------------~~~ 250 (1416)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++........ ...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 368999999999998885432 24567899999999999999998753211111 111
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
.++..+....+ +..+++++.+ ... ..+++-++|+|+++..+...++.+...+.......++
T Consensus 91 ~~~~~~~~~~v-~~ir~i~~~~-----------------~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 91 IEIDAASRTKV-EEMREILDNI-----------------YYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred EEecccccCCH-HHHHHHHHHH-----------------hcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11211111111 1111111111 100 1244569999999877656677777777655556677
Q ss_pred EEEccc-hHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 330 IVTTRN-QEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 330 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
|++|.+ ..+.... +....+++.+++.++..+.+.+.+...+..- + .+.++.|++.++|.|-.+..
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-~---~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT-D---EYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHH
Confidence 766654 3333222 2235799999999999988887664322111 1 34566799999998864433
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-05 Score=93.08 Aligned_cols=247 Identities=16% Similarity=0.143 Sum_probs=137.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|++..++++.+|+..... +...+.+.|+|++|+||||+|+.+++... |+ ++-++.+..... ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 3589999999999999865321 12267899999999999999999998542 22 233344433222 2223332
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh----hhHhhhccccccCCCCcEEEEEccch-HHHH-hh-
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY----NDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVA-IM- 342 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~-~~- 342 (1416)
....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+. .... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2221110 00113678999999976422 234445444432 234566666432 1111 11
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhccC-CC--cchHHHHHhhc
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGK-HG--PSDWEDVLNSN 419 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-~~--~~~w~~~l~~~ 419 (1416)
.....+.+.+++.++....+.+.+...+.. .+ .++...|++.++|-.-.+......+... .. .+....+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIE-CD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 233578999999999988888776443322 22 3456779999999776555433333322 11 222222221
Q ss_pred ccCCCCCccCchhHHHHHHh-CCChhHHHHHhHhccCCCCcccCHHHHHHHHHHcCCCCC
Q 000568 420 IWDLPEDRCGILPALRVSYY-YLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDH 478 (1416)
Q Consensus 420 ~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~ 478 (1416)
......++.++..-+. .-+......+..+ .++. ..+..|+.+.+...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 1122456666665554 2233333322221 1222 45778999999865
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-05 Score=90.31 Aligned_cols=209 Identities=15% Similarity=0.127 Sum_probs=130.6
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 270 (1416)
.+.+|+.+++++...|...-. +....-+.|+|.+|.|||+.++.|....+....=..+++|++-...+..+++..|++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 388999999999988865432 222334889999999999999999985332221122789999999999999999999
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhc--cccEEEEeccccccChhhHhhhccccccCC-CCcEEEE--EccchHHHHhhC--
Q 000568 271 CITKQTIDDSDLNLLQEELNKQLS--RKKFLLVLDDVWNENYNDWVDMSRPLEAGA-PGSKIIV--TTRNQEVVAIMG-- 343 (1416)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-~gs~iiv--TtR~~~v~~~~~-- 343 (1416)
+++..........+....+.+.+. ++.++||||+++.-....-+.+...+.... .+++|++ .+-+......+.
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 998555555666677777777765 578999999996532111122222222221 2455443 333333222221
Q ss_pred -----CCCeeeCCCCChhhHHHHHHHhhcCC-CCCCCChh-HHHHHHHHHHhcCCChHHHHHHHH
Q 000568 344 -----TAPAYQLKRLSTDDCLSVFTQHSLDS-RDFSSNKS-LEEIGKKIVIKCNGLPLAAKTLGG 401 (1416)
Q Consensus 344 -----~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~-~~~~~~~i~~~~~glPLai~~~~~ 401 (1416)
....+..++-+.+|-.+++..++-.. ......+. ++-+|...++..|---.||.++-.
T Consensus 176 v~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 176 VKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 12347889999999999999887321 12222333 333444444444444455554433
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.2e-06 Score=96.27 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=113.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc--cCcEEEEEecCCcCHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH--FDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+....... -.... +.....-...+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHH
Confidence 468999999999999986542 2456789999999999999999874322100 00000 000000001111
Q ss_pred HHHHh-----cCCCCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchH
Q 000568 268 ILRCI-----TKQTIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQE 337 (1416)
Q Consensus 268 il~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~ 337 (1416)
|...- .........++++.+.+... ..++.-++|||+++..+...++.++..+..-..+.++|+ ||....
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 11000 00000111223322222221 135566999999988877788888887766445666555 444444
Q ss_pred HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 338 VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 338 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
+...+ .....+.++.++.++..+.+.+.+...+... . .+..+.|++.++|.|.....+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-E---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 43222 1125699999999999998887653322111 1 234567999999999655443
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.6e-06 Score=95.44 Aligned_cols=198 Identities=14% Similarity=0.133 Sum_probs=108.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccC-cEEEEEecCCcCH--HHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD-LKAWTCVSNDFDV--IRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~--~~~~~ 266 (1416)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+++.... ..+. ..+.++++.-.+. ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhc
Confidence 46889999999999988543 3346789999999999999999874321 1121 2334444321100 00000
Q ss_pred --HHHHHhcCC-CCCCCCHHHHHHHHHHH---h--ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-H
Q 000568 267 --TILRCITKQ-TIDDSDLNLLQEELNKQ---L--SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-E 337 (1416)
Q Consensus 267 --~il~~l~~~-~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~ 337 (1416)
.....++.. .......+.....++.. . .+.+-+||+||++.........+...+......+++|+|+... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 00000112222212111 1 1344589999997654344444555444444456788777543 2
Q ss_pred HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 338 VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 338 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
+...+ .....+++.+++.++...++.+.+...+.. .+ .+..+.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHHHHHH
Confidence 22222 223568899999999998888876433321 11 34666799999987755543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.9e-07 Score=111.78 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=57.6
Q ss_pred ccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEcc
Q 000568 1133 LKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISE 1212 (1416)
Q Consensus 1133 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~ 1212 (1416)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..++ +|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~------------------------~L~~LdLs~ 475 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT------------------------SLEVLDLSY 475 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCC------------------------CCCEEECCC
Confidence 45555555555555555555555555555555555555554444444 555555555
Q ss_pred ccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCC
Q 000568 1213 CERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMK 1263 (1416)
Q Consensus 1213 n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~ 1263 (1416)
|.+.+.+|..+.++++|+.|+|++|.+.+..|..+..++.++..+++.+|+
T Consensus 476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 555555555555555566666665555555555444333344555555544
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=95.83 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=112.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++........+ . .....-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~------~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVT------S-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC------C-CCCccCHHHHHHh
Confidence 468999999999999986442 246788999999999999999987432211100 0 0000000111111
Q ss_pred HHhcCC-----CCCCCCHHHHHHHHHH----HhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHH
Q 000568 270 RCITKQ-----TIDDSDLNLLQEELNK----QLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVV 339 (1416)
Q Consensus 270 ~~l~~~-----~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~ 339 (1416)
..-... .......+++.+.+.. -..+++-++|+|+|..-+...++.+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 000000 0001122222221111 123566789999998776667777777776555566777777653 222
Q ss_pred Hh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 340 AI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 340 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
.. ......+++++++.++..+.+.+.+...+.... .+....|++.++|.+-.+..
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 11 123367999999999999888877644332222 34556699999997755443
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.9e-06 Score=99.39 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=113.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-------------------cCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-------------------FDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 250 (1416)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++....... |..+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999999885432 2455689999999999999999975422111 1111
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNK-QLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
+++.......+. .++++ +..+.. -..+++-++|||++..-....++.++..+.......++
T Consensus 91 iEidAas~~kVD-dIReL-----------------ie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKVD-DTREL-----------------LDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCHH-HHHHH-----------------HHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222111111111 11222 222211 12467779999999887777788887777655556666
Q ss_pred EEEccc-hHHHHh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 330 IVTTRN-QEVVAI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 330 ivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
|++|.+ ..+... ......+++++++.++..+.+.+.+-...... -.+....|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 665554 433322 12236799999999999998887663322111 1345677999999988544433
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-06 Score=102.81 Aligned_cols=194 Identities=16% Similarity=0.167 Sum_probs=113.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++.....+.+...+|.+.+... +.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 358999999999988885432 24567999999999999999998754332222222332221100 000000000
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHH-----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHHHhh-
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQ-----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAIM- 342 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~- 342 (1416)
..+... .....+.+.+ +.+. +.+++-++|+|+++......++.+...+........+|++|.. ..+...+
T Consensus 88 ~el~~~--~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 88 LEIDAA--SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred EEeccc--ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 000000 0111222211 2221 2345679999999877666787887777655455565555543 3332222
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
.....+++.+++.++..+.+.+.+-..+.... .+.+..|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 22357999999999999999887643332111 345677999999988544
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-08 Score=111.44 Aligned_cols=174 Identities=22% Similarity=0.240 Sum_probs=118.3
Q ss_pred cEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEccc
Q 000568 1134 KFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISEC 1213 (1416)
Q Consensus 1134 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n 1213 (1416)
...+++.|++. .+|..++.+..|+.+.+++|.+ ..+|..+.++..|..|+|+. +.+..+|...+.| -|+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEecC
Confidence 45667777665 4566677777888888888774 44677778888888888874 4455566555554 4778888777
Q ss_pred cCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccC
Q 000568 1214 ERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRD 1293 (1416)
Q Consensus 1214 ~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1293 (1416)
++. .+|..++.++.|..||.+.|.+..+.+ . +..+.+|+.|.+..|
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~slps-q-------------------------------l~~l~slr~l~vrRn- 199 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQSLPS-Q-------------------------------LGYLTSLRDLNVRRN- 199 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhhhchH-H-------------------------------hhhHHHHHHHHHhhh-
Confidence 765 677777777777788877775544322 1 445555555555543
Q ss_pred CcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCC
Q 000568 1294 QDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPE 1359 (1416)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 1359 (1416)
.+..+|.|.. -=.|..|+++ ||++..||.++.++..|+.|.|.+|| |++-|.
T Consensus 200 -~l~~lp~El~-----------~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 200 -HLEDLPEELC-----------SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP-LQSPPA 251 (722)
T ss_pred -hhhhCCHHHh-----------CCceeeeecc-cCceeecchhhhhhhhheeeeeccCC-CCCChH
Confidence 3344555431 1136677777 47899999888888999999999888 787665
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-06 Score=84.48 Aligned_cols=182 Identities=20% Similarity=0.190 Sum_probs=93.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+|||.+.-++.+.-++..... .++...-+..||++|+||||||+.+++.. ...| .+.+...-... .-+..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~---~~~sg~~i~k~-~dl~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANEL--GVNF---KITSGPAIEKA-GDLAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHC--T--E---EEEECCC--SC-HHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhcc--CCCe---EeccchhhhhH-HHHHHHH
Confidence 4799999888887655543211 23456788899999999999999999843 3333 12222111111 1112222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhcccccc--------CCC-----------CcEEE
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEA--------GAP-----------GSKII 330 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~--------~~~-----------gs~ii 330 (1416)
..+ +++-+|.+|.+..-+...-+.+..+..+ .++ =+-|=
T Consensus 97 ~~l----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 97 TNL----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp HT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred Hhc----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 222 2344566677644332222222222111 111 12344
Q ss_pred EEccchHHHHhhCC--CCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 000568 331 VTTRNQEVVAIMGT--APAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLR 404 (1416)
Q Consensus 331 vTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 404 (1416)
.|||...+...+.. .-..+++..+.+|-.++..+.+..-.. +--++.+.+|++++.|-|--+.-+-..++
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 68887655443332 234589999999999999887743222 11256788899999999966555544443
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.7e-05 Score=92.47 Aligned_cols=195 Identities=18% Similarity=0.206 Sum_probs=113.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCc-EEEEEecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDL-KAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 268 (1416)
.+++|.+..+..+...+.... -...+.++|+.|+||||+|+.+++.......... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 368999999998888775432 2467889999999999999999875422111100 000000000 000111
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchHH
Q 000568 269 LRCITKQ-----TIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQEV 338 (1416)
Q Consensus 269 l~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v 338 (1416)
....... .......+++...+... +.+++-++|+|+++.-+...|+.+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 1000000 00111223322222211 245677999999988766778888877766555666554 5555555
Q ss_pred HHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 339 VAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 339 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
.... .....+++.+++.++....+.+.+...+.... .+....|++.++|.+--+.
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDAV 227 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 4433 23357999999999999999888754332211 2445669999999774443
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-06 Score=92.14 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=33.9
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ 244 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 244 (1416)
.||||+++++++...+... .....+.+.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999521 33456999999999999999999998854333
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-07 Score=95.69 Aligned_cols=218 Identities=19% Similarity=0.140 Sum_probs=96.5
Q ss_pred CCCccEEEEecCCc--------hhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCC
Q 000568 1130 PQSLKFLDVWECPK--------LESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP 1201 (1416)
Q Consensus 1130 ~~~L~~L~L~~n~~--------~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 1201 (1416)
...|.+|.++...- -..+|-.+.-+.+|+++.+|+|.-..+ ......-|.|+++.+.+ .-+...| ...|
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~-s~~~~~~-~l~p 257 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHN-TTIQDVP-SLLP 257 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeec-ccccccc-cccc
Confidence 35788888875421 122333455677888888888874322 12222345677777752 2222211 2222
Q ss_pred CCCcceEEEcccc-CCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCC
Q 000568 1202 CAKLTRLEISECE-RLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNR 1280 (1416)
Q Consensus 1202 ~~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~ 1280 (1416)
..++....-+.-. ..+.....+.....|+.||+|+|.|+.+... . .+.+.++.|++++|.... + +.++.
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDES-v-KL~Pkir~L~lS~N~i~~-v-------~nLa~ 327 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDES-V-KLAPKLRRLILSQNRIRT-V-------QNLAE 327 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhh-h-hhccceeEEeccccceee-e-------hhhhh
Confidence 1111111110000 0111112223344555555555554444221 1 222355555555543222 1 11445
Q ss_pred CCCcceEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCC-
Q 000568 1281 FSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPE- 1359 (1416)
Q Consensus 1281 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~- 1359 (1416)
+++|+.|++++|. +..+.. |-..+-+++.|.++. |.+++++ ++.++-+|..|++++|+ +..+.+
T Consensus 328 L~~L~~LDLS~N~--Ls~~~G----------wh~KLGNIKtL~La~-N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV 392 (490)
T KOG1259|consen 328 LPQLQLLDLSGNL--LAECVG----------WHLKLGNIKTLKLAQ-NKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEV 392 (490)
T ss_pred cccceEeecccch--hHhhhh----------hHhhhcCEeeeehhh-hhHhhhh-hhHhhhhheeccccccc-hhhHHHh
Confidence 5555555555531 111111 112344555555555 4555554 45555566666666554 443322
Q ss_pred --CCCccccceeeecCCh
Q 000568 1360 --KGLPASLLRLEISGCP 1375 (1416)
Q Consensus 1360 --~~~~~sL~~L~l~~cp 1375 (1416)
.|-.+-|+.+.+.+||
T Consensus 393 ~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccccHHHHHhhcCCC
Confidence 2333455555555555
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.1e-05 Score=93.89 Aligned_cols=186 Identities=18% Similarity=0.147 Sum_probs=113.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc-------------------ccCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD-------------------HFDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 250 (1416)
.+++|.+..++.+...+.... ....+.++|+.|+||||+|+.+++...... .|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 368999999999999885432 245678999999999999999987432110 12222
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
+++.......+. +..++.+.+... ..+++-++|+|+++.-+...++.++..+......+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 233222211111 112222222211 2456779999999876666777788777665456666
Q ss_pred EE-EccchHHHHh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 000568 330 IV-TTRNQEVVAI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLGGL 402 (1416)
Q Consensus 330 iv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~ 402 (1416)
|+ ||....+... ......+++++++.++....+.+.+-..+.... .+....|++.++|.+ -|+..+-.+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 54 5544444422 223367999999999988887775533221111 345566999999966 455554433
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-05 Score=90.79 Aligned_cols=182 Identities=12% Similarity=0.153 Sum_probs=105.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccC-cEEEEEecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD-LKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 268 (1416)
.+++|.+..++.|..++... ..+.+.++|++|+||||+|+.+++... ...|. .++-++.+...... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 35889998888888877432 334577999999999999999987431 11221 11222223222221 22222
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-CCCC
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTAP 346 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~ 346 (1416)
++.+...... .-.++.-++|+|+++.-.......+...+......+++|+++... .+...+ ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221110000 001345699999998765555555655554434556777766442 221111 1125
Q ss_pred eeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 347 AYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 347 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
.++++++++++....+...+-..+..-. .+....|++.++|-.-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 6899999999999888877744332222 345667999999876433
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.8e-06 Score=82.93 Aligned_cols=125 Identities=18% Similarity=0.120 Sum_probs=72.1
Q ss_pred eeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHh
Q 000568 193 YGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCI 272 (1416)
Q Consensus 193 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 272 (1416)
+|++..++.+...+... ..+.+.|+|++|+|||++|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888542 346889999999999999999998542 112345666655433322211111100
Q ss_pred cCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh---hhHhhhccccccC---CCCcEEEEEccchH
Q 000568 273 TKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY---NDWVDMSRPLEAG---APGSKIIVTTRNQE 337 (1416)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~~~~~l~~~---~~gs~iivTtR~~~ 337 (1416)
............++.++|+||++.... ..+......+... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111222245678999999985321 2222222222221 35778888888653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=4e-06 Score=81.27 Aligned_cols=119 Identities=23% Similarity=0.259 Sum_probs=78.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
+++.|.|+-|+||||++++++.+.. ....+++++..+......... + +.+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 6899999999999999999997543 234466776655432110000 0 2233333344477
Q ss_pred EEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhh------CCCCeeeCCCCChhhH
Q 000568 298 FLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIM------GTAPAYQLKRLSTDDC 358 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 358 (1416)
.+|+||+|... .+|......+.+..+..+|++|+........- +....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999665 67888777776665678999999987655331 1224578899887763
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-05 Score=84.95 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=88.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
..+.|+|..|+|||+|++++++.. ......+.|+++.+ ....+. ..+. .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcC
Confidence 569999999999999999998743 22233456665432 111111 1111 11 123
Q ss_pred EEEEeccccccC-hhhHhh-hcccccc-CCCCcEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHHHHHh
Q 000568 298 FLLVLDDVWNEN-YNDWVD-MSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 298 ~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
-+||+||+.... ...|.. +...+.. ...|..||+|++.. ++..++.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996432 123332 2222211 22466799999853 23333344568999999999999999987
Q ss_pred hcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 366 SLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
+....- ..+ +++..-|++.++|-.-.+
T Consensus 175 a~~~~l-~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGL-ALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCC-CCC---HHHHHHHHHhCCCCHHHH
Confidence 753322 122 345566888888766544
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-06 Score=107.66 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=75.0
Q ss_pred cccCCCcchhhccccCCCCCCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCC
Q 000568 1112 FSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGN 1191 (1416)
Q Consensus 1112 ~~~~~~~~~~~~~~~~~l~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~ 1191 (1416)
+..+++.+.++. .+..++ +|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|+.
T Consensus 425 L~~n~L~g~ip~-~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 425 LDNQGLRGFIPN-DISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred CCCCCccccCCH-HHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 344555555554 466675 999999999999999999999999999999999999999998888888888888877665
Q ss_pred cccccCCCCC-CCCcceEEEcccc
Q 000568 1192 LVSFSEGGLP-CAKLTRLEISECE 1214 (1416)
Q Consensus 1192 l~~~~~~~~~-~~~L~~L~l~~n~ 1214 (1416)
...+|..... ..++..+++.+|.
T Consensus 503 ~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 503 SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cccCChHHhhccccCceEEecCCc
Confidence 5555543322 1233444555444
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.6e-05 Score=90.14 Aligned_cols=181 Identities=11% Similarity=0.144 Sum_probs=104.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe--cCCcCHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV--SNDFDVIRLTKT 267 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 267 (1416)
.+++|++..++.+..++... ..+.+.++|.+|+||||+|+.+++.... ..+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~-~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYG-EDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcC-Cccc-cceEEeccccccchH-HHHH
Confidence 35889999999999998543 2345799999999999999999874311 1121 112222 2221111 1111
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-CCC
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTA 345 (1416)
Q Consensus 268 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~ 345 (1416)
.+..+..... .....+-++++|+++.-....+..+...+......+++|+++... .+.... ...
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001235689999986654444555555554444556777766432 221111 123
Q ss_pred CeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 346 PAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 346 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
..+++.+++.++....+...+...+..-. .+....+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 46899999999998888877643332111 3456678999999876543
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-05 Score=93.77 Aligned_cols=180 Identities=16% Similarity=0.175 Sum_probs=109.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-------------------cCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-------------------FDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 250 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+....... |..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 468999999999999986532 2457889999999999999999874322111 1011
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCC
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPG 326 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~g 326 (1416)
+.++.+.. ...+.+.+.+... ..+++-++|+|++...+....+.++..+......
T Consensus 91 lEidaAs~---------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASN---------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEecccc---------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 12211111 1122222222110 2356679999999776555566677666544456
Q ss_pred cEEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 327 SKIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 327 s~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
+++|++|.+. .+.... +....+.+..++.++....+.+.+-..+.... .+....|++.++|.+.-+..+
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHHH
Confidence 6777666543 222111 12245888999999999988877643332211 345667999999988544433
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-05 Score=90.81 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=111.7
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++......... ...+...... ..+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC----~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSC----LEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHH----HHHH
Confidence 468999999999998885432 134678999999999999999987532211100 0011111111 1111
Q ss_pred HHhcCCC-----CCCCCHH---HHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchHHH
Q 000568 270 RCITKQT-----IDDSDLN---LLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQEVV 339 (1416)
Q Consensus 270 ~~l~~~~-----~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~ 339 (1416)
....... ......+ ++.+.+... ..++.-++|+|++..-+...++.++..+........+|. ||....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 1111110 0011122 222222211 235667999999988777788888777755434555554 44444443
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
... .....+.+.+++.++..+.+.+.+...+..-. .+....|++.++|.+--+.
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHHHHH
Confidence 222 22356999999999998888877643332111 3456779999999884433
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-05 Score=96.03 Aligned_cols=203 Identities=19% Similarity=0.169 Sum_probs=119.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc---CcEEEEEecCC---cCHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF---DLKAWTCVSND---FDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 263 (1416)
++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35889999999888777322 24579999999999999999998754332222 12334443221 12222
Q ss_pred HHHH---------------HHHHhcCCCC----------------CCCC-HHHHHHHHHHHhccccEEEEeccccccChh
Q 000568 264 LTKT---------------ILRCITKQTI----------------DDSD-LNLLQEELNKQLSRKKFLLVLDDVWNENYN 311 (1416)
Q Consensus 264 ~~~~---------------il~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~ 311 (1416)
+... .+...+.... +... ....+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 2111 1111111000 0111 123567788888899999998888777666
Q ss_pred hHhhhccccccCCCCcEEEE--EccchHH-HHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHH
Q 000568 312 DWVDMSRPLEAGAPGSKIIV--TTRNQEV-VAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVI 387 (1416)
Q Consensus 312 ~~~~~~~~l~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 387 (1416)
.|+.+...+....+...|++ ||++... ...+ .....+.+.+++.+|.+.++.+.+..... ... .++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHH
Confidence 78888776666555555555 5664321 1111 12246788999999999999987643211 111 234445666
Q ss_pred hcCCChHHHHHHHHH
Q 000568 388 KCNGLPLAAKTLGGL 402 (1416)
Q Consensus 388 ~~~glPLai~~~~~~ 402 (1416)
.+..-+-|+..++..
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 655445666655544
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.7e-05 Score=91.73 Aligned_cols=196 Identities=15% Similarity=0.189 Sum_probs=109.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|++..++.+..++.... -.+.+.++|+.|+||||+|+.+++...... |.... ....-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 468999999999999885432 246788999999999999999987532211 11100 000001111111
Q ss_pred HHhcCC-----CCCCCCHHHHH---HHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEc-cchHHH
Q 000568 270 RCITKQ-----TIDDSDLNLLQ---EELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTT-RNQEVV 339 (1416)
Q Consensus 270 ~~l~~~-----~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~ 339 (1416)
...... .......+++. ..+... ..+++-++|+|+++.-+...+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110000 00001122221 111110 12344479999998766667777777765544455655544 444443
Q ss_pred Hh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHHH
Q 000568 340 AI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLGG 401 (1416)
Q Consensus 340 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~~ 401 (1416)
.. ......+++.+++.++....+...+...+..- + .+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-E---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 22335799999999999988887664322111 1 3456679999999664 4444443
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.5e-05 Score=94.70 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=112.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..++.|...+.... -...+.++|..|+||||+|+.+++.......+.. .....-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHH
Confidence 468999999999998885432 2355789999999999999999875322111000 0000001111111
Q ss_pred HHhcC-----CCCCCCCHHHH---HHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHH
Q 000568 270 RCITK-----QTIDDSDLNLL---QEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVV 339 (1416)
Q Consensus 270 ~~l~~-----~~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 339 (1416)
..-.. .......++++ ++.+... ..+++-++|+|+++.-+...++.++..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10000 00000112222 2222111 2466779999999887777788888777665456666655544 4333
Q ss_pred Hh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 340 AI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 340 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
.. ......+.+++++.++..+.+.+.+-..+.... .+....|++.++|.+-.+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 122367999999999999888876532221111 344566999999988644444
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.1e-05 Score=88.47 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=110.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc--------------------cccCc
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ--------------------DHFDL 249 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~ 249 (1416)
.+++|.+..++.+.+++.... -...+.++|++|+||||+|+.+....... .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 358999999999999885432 24578899999999999999887643211 0222
Q ss_pred EEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 250 KAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 250 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
..++........ ...+++...+... -+.+++-++|+|+++.-.....+.+...+......+.+
T Consensus 88 ~~~~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 88 VIEIDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEEeeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 122222211111 1112222221110 01245568999999765545566676666544456666
Q ss_pred EEEccchH-HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 330 IVTTRNQE-VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 330 ivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
|++|.+.. +...+ .....+++.++++++..+.+...+-..+.. .+ .+.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCChHHHHHHH
Confidence 66665433 33222 223568899999999988888766432211 11 3566779999999987665444
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.14 E-value=4e-06 Score=90.09 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=62.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC--cCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND--FDVIRLTKTILRCITKQTIDDSDLN------LLQE 287 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~ 287 (1416)
....++|+|++|+|||||+++++++.... +|+.++|+.+... .++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999976444 8999999997776 7888999988444333222221111 1222
Q ss_pred HHHHH-hccccEEEEecccc
Q 000568 288 ELNKQ-LSRKKFLLVLDDVW 306 (1416)
Q Consensus 288 ~l~~~-l~~kr~LlVlDdv~ 306 (1416)
..... -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 24789999999994
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.1e-05 Score=81.67 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=97.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
...-+.+||++|+||||||+.+....+... ..||..|....-..-.++|+++-.. ...+..
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhhc
Confidence 467788999999999999999998543333 5677777665544555555554321 123467
Q ss_pred ccEEEEeccccccChhhHhhhccccccCCCCcEEEE--EccchHH---HHhhCCCCeeeCCCCChhhHHHHHHHhhc---
Q 000568 296 KKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV--TTRNQEV---VAIMGTAPAYQLKRLSTDDCLSVFTQHSL--- 367 (1416)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~--- 367 (1416)
+|.+|.+|.|..-+..+.+ ..+|.-..|.-++| ||.++.. +..+..-.++.|+.|+.++...++.+...
T Consensus 222 rkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 8999999999543222222 23455667877776 6766532 12223346899999999999888877432
Q ss_pred CCC---CCCCCh---hHHHHHHHHHHhcCCChH
Q 000568 368 DSR---DFSSNK---SLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 368 ~~~---~~~~~~---~~~~~~~~i~~~~~glPL 394 (1416)
... +.-+++ --..+.+-++..|.|-.-
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 111 111221 123455667777888653
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.5e-05 Score=90.42 Aligned_cols=187 Identities=16% Similarity=0.180 Sum_probs=107.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-------------------cCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-------------------FDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 250 (1416)
.++||.+.....|...+.... -...+.++|++|+||||+|+.+++....... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999888888888775432 2356789999999999999999874322110 0011
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNK-QLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
..++.+....+..+ +++.+. +.. -..+++-++|+|+++.-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~~~-----------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDA-----------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHH-----------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222211111111 111111 110 12345679999999665444556666665543334444
Q ss_pred EE-EccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCC-ChHHHHHHHHHh
Q 000568 330 IV-TTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNG-LPLAAKTLGGLL 403 (1416)
Q Consensus 330 iv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~~~~l 403 (1416)
|+ |+....+...+ .....+++.+++.++....+.+.+...+..- + .+....|++.++| .+.|+..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i-~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI-D---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44 44333443332 2335789999999999888888764332211 1 3455668887765 567777666543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.2e-06 Score=70.35 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=37.1
Q ss_pred CCcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCC
Q 000568 1203 AKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMK 1263 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~ 1263 (1416)
|+|++|++++|.+....+..|.++++|++|++++|.+..+.+..|.++| +|+.|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-NLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST-TESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC-CCCEEeCcCCc
Confidence 3566666666666544445666666666666666666666666666664 66666666553
|
... |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.8e-05 Score=82.32 Aligned_cols=156 Identities=12% Similarity=0.128 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
.+.+.|+|+.|+|||+|++.+++... ..-..+.++++..... ...+..+.+. .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~----~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------FVPEVLEGME----Q- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------hhHHHHHHhh----h-
Confidence 35789999999999999999987432 2223455665533110 0011111111 1
Q ss_pred cEEEEeccccccC-hhhHhhh-cccccc-CCCC-cEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHHHH
Q 000568 297 KFLLVLDDVWNEN-YNDWVDM-SRPLEA-GAPG-SKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFT 363 (1416)
Q Consensus 297 r~LlVlDdv~~~~-~~~~~~~-~~~l~~-~~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 363 (1416)
--++++||+.... ...|+.. ...+.. ...| .++|+||+.. ++..++....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2378999996532 1344432 222221 1123 4799999853 344555566789999999999999988
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 364 QHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
+++...+ ...+ +++..-|++.+.|..-++..+-..+
T Consensus 178 ~~a~~~~-~~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRG-FELP---EDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 8664322 1222 4566779999988776665444433
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-05 Score=91.53 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=110.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-------------------cCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-------------------FDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 250 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-.... |..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 368999999999999996542 2456789999999999999999875322111 1112
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKII 330 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii 330 (1416)
+.++.+....+..+ +++++.+... -..++.-++|+|+|+.-+....+.+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22322222222221 2222221110 113556689999998876677777777776655567766
Q ss_pred EEccc-hHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 331 VTTRN-QEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 331 vTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
++|.+ ..+.... .....+++++++.++....+.+.+-..+.... .+....|++.++|.+.-+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 65543 3333221 22356889999999887776666533222111 23456689999998855443
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=5e-05 Score=92.07 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=112.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc--CcEEEEEecCCcCHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF--DLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 267 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+..-..... .....-.+.. -...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~----C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV----CQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc----cHHHHH
Confidence 368999998999999886542 24677899999999999999997643221100 0000000000 011111
Q ss_pred HHHHhcC-----CCCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEc-cchH
Q 000568 268 ILRCITK-----QTIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTT-RNQE 337 (1416)
Q Consensus 268 il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~ 337 (1416)
|...-.. .......++++.+.+... ..++.-++|||+|+.-+...++.++..+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1000000 000111222222222111 12445589999998877778888888776654566666555 4344
Q ss_pred HHHh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 338 VVAI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 338 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
+... ......++++.++.++..+.+.+.+...+.... .+....|++.++|.+--+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 223467999999999999888877643332111 345667899999977554433
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.9e-05 Score=85.00 Aligned_cols=197 Identities=13% Similarity=0.078 Sum_probs=114.6
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEE---EEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAW---TCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w---v~~~~~~~~~~~~~ 266 (1416)
.+++|.+..++.+.+.+.... -...+.++|+.|+||+|+|..+.+..-.......... .........-...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 468999999999999886542 2456889999999999999888774322111000000 00000000001111
Q ss_pred HHHHHhcCC---------C-----CCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCc
Q 000568 267 TILRCITKQ---------T-----IDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGS 327 (1416)
Q Consensus 267 ~il~~l~~~---------~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 327 (1416)
.+...-... . ...-.++++ +.+.+.+ .+.+-++|+||++..+......+...+..-..++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111111000 0 011123332 2233333 2556799999998877777778887776655566
Q ss_pred EEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 328 KIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 328 ~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
.+|++|... .+.... .....+.+.+++.++..+++...... ..+ +....+++.++|.|+.+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 677776664 332222 22357999999999999999876421 111 112568999999998665543
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-06 Score=91.76 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=61.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc--CHHHHHHHHHHHhcCCCCCCCCHHHHH-----HH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF--DVIRLTKTILRCITKQTIDDSDLNLLQ-----EE 288 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~-----~~ 288 (1416)
..+...|+|++|+||||||++||++.... +|+.++||.+.+.. .+.++++.+...+-....+........ -.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999976544 89999999998887 677777777643332222222211111 11
Q ss_pred HHHH--hccccEEEEecccc
Q 000568 289 LNKQ--LSRKKFLLVLDDVW 306 (1416)
Q Consensus 289 l~~~--l~~kr~LlVlDdv~ 306 (1416)
..++ -.+++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 1222 25789999999993
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-06 Score=87.22 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=18.0
Q ss_pred cccEEeeccCCCccccccccc-CCCCcceeeeccCCCcccccCCCCCCCCcceEEEccccCCCcCcccc-cCcCccceee
Q 000568 1156 SLEVIDIGNCENLKILPSGLH-NLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGL-RNLTCLQHLT 1233 (1416)
Q Consensus 1156 ~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~ 1233 (1416)
++++|+|.+|.+... +.++ .+.+|+.|++++ +.+..+. ++..++.|++|++++|.+... ...+ ..+|+|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 445555555544331 1232 344555555542 2333332 222345666666666666532 2222 3456666666
Q ss_pred eecCCCCCC
Q 000568 1234 IGDVLSPER 1242 (1416)
Q Consensus 1234 ls~n~~~~~ 1242 (1416)
+++|++.++
T Consensus 95 L~~N~I~~l 103 (175)
T PF14580_consen 95 LSNNKISDL 103 (175)
T ss_dssp -TTS---SC
T ss_pred CcCCcCCCh
Confidence 666665554
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.5e-05 Score=86.31 Aligned_cols=180 Identities=13% Similarity=0.124 Sum_probs=108.2
Q ss_pred eeeeehhHHHHHHHHHhcCCCC----CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc------------------cC
Q 000568 191 KVYGRETEKKEIVELLLRDDLR----NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH------------------FD 248 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------f~ 248 (1416)
+++|.+..++.|..++...... +..-..-+.++|++|+|||++|+.++........ ..
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5889999999999998654210 0113466889999999999999998764221110 01
Q ss_pred cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccC
Q 000568 249 LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAG 323 (1416)
Q Consensus 249 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~ 323 (1416)
.+.++.... .....+++.. +.+.+ .+++-++|+|+++.-+....+.+...+...
T Consensus 86 D~~~i~~~~--------------------~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 86 DVRVVAPEG--------------------LSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CEEEecccc--------------------ccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 111221110 0111222221 11111 245558888999877666666677766555
Q ss_pred CCCcEEEEEccc-hHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 324 APGSKIIVTTRN-QEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 324 ~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
..+..+|++|.+ ..+.... .....+.+.+++.++..+.+..... .+ .+.+..+++.++|.|.....+.
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~---~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VD---PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 556666665555 3333332 2236799999999999988875431 11 2446779999999997665443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-07 Score=100.13 Aligned_cols=86 Identities=19% Similarity=0.130 Sum_probs=57.1
Q ss_pred ccCccEEEeecCCCCcc----ccccccCCCCcceEEEccCCC---ccccC--------CCCCCCCccEEeEccCCCCCcC
Q 000568 965 SCKLEYLGLSYCQGLVT----LPQSLLNLSSLREIYIRSCSS---LVSFP--------EVALPSKLRLITIWDCEALKSL 1029 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~~---~~~~~--------~~~~~~~L~~L~l~~~~~~~~~ 1029 (1416)
..++++|+||+|.+... +...+.+.++|+..+++.--- ...+| .....+.|++|+||+|-+-..-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 36889999999987542 344667778888888875311 11122 1334568999999999865544
Q ss_pred chhh--hcCCCCCcCeeEEccCC
Q 000568 1030 PEAW--MCETNSSLEILNIAGCS 1050 (1416)
Q Consensus 1030 ~~~~--~~~~~~~L~~L~l~~c~ 1050 (1416)
+..+ +..++.+|+.|.+.+|-
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCC
Confidence 3322 22678889999998874
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.8e-05 Score=90.67 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=108.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc-------------------ccCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD-------------------HFDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 250 (1416)
.++||.+..++.+..++.... -...+.++|+.|+||||+|+.+........ .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 368999999999999886532 235678999999999999999986432211 11112
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKII 330 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii 330 (1416)
+++..+....+. .+++++...... -..+++-++|+|+++.-+....+.+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd-~ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVD-AMRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHH-HHHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 222221111111 111222211100 013566799999998766666777777776544566666
Q ss_pred EEccc-hHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHH
Q 000568 331 VTTRN-QEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 399 (1416)
Q Consensus 331 vTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 399 (1416)
++|.+ +.+...+ .....+++++++.++..+.+.+.+...+.... .+..+.|++.++|.+- |+..+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 65544 3222111 11256899999999998888776533221111 3455679999999775 44443
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.8e-05 Score=87.32 Aligned_cols=182 Identities=18% Similarity=0.182 Sum_probs=112.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc-------------------cccCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ-------------------DHFDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 250 (1416)
.++||.+..++.+...+..+. -...+.++|+.|+||||+|+.++...... +.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999999988888875432 24578899999999999999887632110 111123
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKII 330 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii 330 (1416)
+.++.+....+.+ .+++++..... -+.+++-++|+|++..-+...++.+...+......+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333332222222 12222211100 013456689999997766667777877776655667766
Q ss_pred EEc-cchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 331 VTT-RNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 331 vTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
++| ....+...+ .....+++.+++.++..+.+.+.+...+..-. .+....|++.++|.+-.+.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 555 444444332 23367899999999999998887754332222 3455679999999875443
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.8e-05 Score=95.40 Aligned_cols=169 Identities=23% Similarity=0.284 Sum_probs=95.8
Q ss_pred CeeeeehhHHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKK---EIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.+|+|++..+. .+.+.+.. +....+.++|++|+||||+|+.+++. ...+|. .++.+. ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 35889888774 45555533 23456789999999999999999974 333331 111110 0000
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh--ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEE--ccch--HHHH
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQL--SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVT--TRNQ--EVVA 340 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivT--tR~~--~v~~ 340 (1416)
+..+......+.+ .+++.++|+||++.-....++.+...+. .|..++|+ |.+. .+..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111112222211 2467899999997665555666554332 35555553 4432 1222
Q ss_pred hh-CCCCeeeCCCCChhhHHHHHHHhhcC------CCCCCCChhHHHHHHHHHHhcCCChH
Q 000568 341 IM-GTAPAYQLKRLSTDDCLSVFTQHSLD------SRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 341 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~~~~i~~~~~glPL 394 (1416)
.. .....+.+++++.++...++.+.+-. ......+ .+..+.|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHH
Confidence 11 12357999999999999998876531 1111112 3455668888888643
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.9e-06 Score=100.19 Aligned_cols=198 Identities=21% Similarity=0.245 Sum_probs=133.7
Q ss_pred EEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCC-CcceeeeccCCCcccccCCCCCCCCcceEEEccc
Q 000568 1135 FLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLC-QLQRISIWCCGNLVSFSEGGLPCAKLTRLEISEC 1213 (1416)
Q Consensus 1135 ~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~-~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~n 1213 (1416)
.+++..+....... .+..++.+..|++.+|.+... +.....+. +|+.|+++ .+.+..+|.....+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~-~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLS-DNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccccC-ccccccchhhccccccc-ccchhhhhhhhhccccccccccCCc
Confidence 46666665533222 234457888888888886654 34445553 88889887 4556666545555789999999999
Q ss_pred cCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcceEEEeccC
Q 000568 1214 ERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRD 1293 (1416)
Q Consensus 1214 ~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1293 (1416)
++. .+|...+.++.|+.|++++|.+..+.+.. ..+..|+.|.+++|+.+.... .+..+..+..+.+.+|.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~~~N~~~~~~~-------~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNSIIELLS-------SLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCchhh--hhhhhhhhhhhcCCcceecch-------hhhhcccccccccCCce
Confidence 877 55555557889999999999887775431 344568899998886444332 26777777777766542
Q ss_pred CcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCCC
Q 000568 1294 QDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPE 1359 (1416)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 1359 (1416)
+..++. ....+++++.|++++ +.++.++. +....+|+.|+++++.....+|.
T Consensus 244 --~~~~~~----------~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 244 --LEDLPE----------SIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred --eeeccc----------hhccccccceecccc-cccccccc-ccccCccCEEeccCccccccchh
Confidence 222111 224677899999998 58888885 77779999999999875444443
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.2e-05 Score=89.13 Aligned_cols=199 Identities=15% Similarity=0.149 Sum_probs=111.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE-ecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC-VSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 268 (1416)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++............|.. .......-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 368999999999988885432 234578999999999999999987543221111111110 00000000111111
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEc-cchH
Q 000568 269 LRCITKQ-----TIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTT-RNQE 337 (1416)
Q Consensus 269 l~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~ 337 (1416)
....... .......+++.+ +.+.+ .+++-++|+|++..-....++.+...+......+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1110000 001111333332 22222 3456689999997766567778877776655566666554 4444
Q ss_pred HHHhhC-CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 338 VVAIMG-TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 338 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
+...+. ....+++.++++++..+.+...+-..+..-. .+.++.|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 433221 2246889999999988888776532221111 35667799999997754433
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00015 Score=80.95 Aligned_cols=213 Identities=15% Similarity=0.155 Sum_probs=129.1
Q ss_pred cCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 188 NEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 188 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
.+..++||+.|++.+.+++...- .....+-+.|.|.+|.|||.+...|+.+......=..++++++..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 35679999999999999997653 2345678899999999999999999986433222234577777665667788888
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhccc--cEEEEeccccccChhhHhhhccccc-cCCCCcEEEEEccch------HH
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQLSRK--KFLLVLDDVWNENYNDWVDMSRPLE-AGAPGSKIIVTTRNQ------EV 338 (1416)
Q Consensus 268 il~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~~~~~l~-~~~~gs~iivTtR~~------~v 338 (1416)
|...+...........+.+..+.+...+. -+|+|+|.++.--...-..+...|. +.-+++|+|+.---. ..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88777322222222245556666666544 5899999996532122223333333 234677766533211 11
Q ss_pred HHhh-----CCCCeeeCCCCChhhHHHHHHHhhcCCCC-CCCChhHHHHHHHHHHhcCCChHHHHHHHHH
Q 000568 339 VAIM-----GTAPAYQLKRLSTDDCLSVFTQHSLDSRD-FSSNKSLEEIGKKIVIKCNGLPLAAKTLGGL 402 (1416)
Q Consensus 339 ~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 402 (1416)
...+ .....+..++.+.++-.+++.++...... ...+..++-.|++++...|.+--|+.+.-+.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 1111 12356888999999999999998743322 1222233444444444444444444444433
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00015 Score=82.58 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=115.6
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc--ccCcEEEEEecCCcCHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD--HFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
-..++|.+...+.+...+.... ....+.|+|+.|+||||+|+.+.+..-... .+.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 3468999999999999985442 245788999999999999998887432211 011110 000111111223
Q ss_pred HHHHHhcC-------C--C-----CCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCc
Q 000568 267 TILRCITK-------Q--T-----IDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGS 327 (1416)
Q Consensus 267 ~il~~l~~-------~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 327 (1416)
.+...-.. + . ...-.++++. .+.+.+ .+++-++|+|+++.-+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33222110 0 0 0111234332 334443 3566799999998877677777777776544455
Q ss_pred EEEE-EccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 328 KIIV-TTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 328 ~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
.+|+ |++...+.... .....+++.+++.++..+++.+.+.... .+ .+.+..|++.++|.|..+..+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 5444 44443333222 1235799999999999999987432111 11 2345679999999998665443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.6e-06 Score=68.42 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=36.7
Q ss_pred CccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccC
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCC 1189 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~ 1189 (1416)
+|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5666666666666555556666666666666666666555556666666666666654
|
... |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.6e-07 Score=102.93 Aligned_cols=78 Identities=33% Similarity=0.560 Sum_probs=38.1
Q ss_pred CCCccccceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCcc
Q 000568 601 LQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQT 680 (1416)
Q Consensus 601 l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 680 (1416)
++.|..|.||||+.|++..+|..++.|. |+.|.+++| .++.+|..|+.+..|.+||.+.|. +..+|..++.|++|+.
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHH
Confidence 3444444455555555555555454443 455555442 444455555544555555555544 4445544444444444
Q ss_pred c
Q 000568 681 L 681 (1416)
Q Consensus 681 L 681 (1416)
|
T Consensus 194 l 194 (722)
T KOG0532|consen 194 L 194 (722)
T ss_pred H
Confidence 4
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00017 Score=75.60 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=63.4
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCC
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDF 372 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 372 (1416)
+.+-++|+|+++.-....++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 456689999997766566777777776655566777776643 232222 22357999999999999888876 1 1
Q ss_pred CCChhHHHHHHHHHHhcCCChHH
Q 000568 373 SSNKSLEEIGKKIVIKCNGLPLA 395 (1416)
Q Consensus 373 ~~~~~~~~~~~~i~~~~~glPLa 395 (1416)
+ .+.+..|++.++|.|..
T Consensus 170 --~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 --S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred --C---HHHHHHHHHHcCCCccc
Confidence 1 34677899999998853
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.4e-05 Score=79.94 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=93.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ... +.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 46789999999999999999987432 1123466665432 1110 011 22222222
Q ss_pred cEEEEeccccccC-hhhHhh-hcccccc-CCCCcEEEEEccchH---------HHHhhCCCCeeeCCCCChhhHHHHHHH
Q 000568 297 KFLLVLDDVWNEN-YNDWVD-MSRPLEA-GAPGSKIIVTTRNQE---------VVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 r~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
. ++|+||+.... ...|.. +...+.. ...|..+|+|++... +..++....++++++++.++-.+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67889996431 234443 3333321 234668888887532 223333446789999999999999987
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 365 HSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
++.... ...+ +++..-|++++.|..-++..+-..|
T Consensus 178 ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 764332 1222 3567779999998876665544443
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=89.29 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=114.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccC--cEEEEEecCCcCHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD--LKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 267 (1416)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++......... ...+..+... ...+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHH
Confidence 468999999999999986442 245688999999999999999987532221110 0000001100 11112
Q ss_pred HHHHhcCCC-----CCCCCHHHHHH---HHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEc-cchH
Q 000568 268 ILRCITKQT-----IDDSDLNLLQE---ELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTT-RNQE 337 (1416)
Q Consensus 268 il~~l~~~~-----~~~~~~~~~~~---~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~ 337 (1416)
|...-.... ......+++.. .++.. +.+++-++|+|+++.-+....+.+...+..-..++.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 221111100 01112233222 22111 22455689999997776666777777776555566666544 4444
Q ss_pred HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 338 VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 338 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
+...+ .....+++..++.++....+.+.+-..+... . .+....|++.++|.+.-+...-
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-E---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHHH
Confidence 43332 2235789999999999998888764332211 1 2456679999999886655443
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.5e-05 Score=81.05 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=88.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
.+.+.|+|..|+|||+||+.+++.... .. ....+++...... . + .. ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~-~~-~~~~~i~~~~~~~------~----~------------------~~-~~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY-GG-RNARYLDAASPLL------A----F------------------DF-DPE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEehHHhHH------H----H------------------hh-ccc
Confidence 467889999999999999999874311 11 1344454433110 0 0 01 122
Q ss_pred cEEEEeccccccChhhHhhhcccccc-CCCCc-EEEEEccchHHH--------HhhCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 297 KFLLVLDDVWNENYNDWVDMSRPLEA-GAPGS-KIIVTTRNQEVV--------AIMGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs-~iivTtR~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
.-+||+||++..+...-..+...+.. ...+. .||+|++..... ..+.....++++++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 34789999965432222333333322 12333 466776643221 123334678999999988777776644
Q ss_pred cCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 367 LDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
-.... ..+ +++.+.+++.+.|.+..+..+-..+
T Consensus 171 ~~~~v-~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGL-QLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22221 122 3466778889999999888776655
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.6e-05 Score=80.24 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=87.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
.+.+.|+|+.|+|||+|++.++.... ..+++.. ....+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hhc-
Confidence 46789999999999999998886421 1233221 111111111 111
Q ss_pred cEEEEecccccc--ChhhHhhhccccccCCCCcEEEEEccc---------hHHHHhhCCCCeeeCCCCChhhHHHHHHHh
Q 000568 297 KFLLVLDDVWNE--NYNDWVDMSRPLEAGAPGSKIIVTTRN---------QEVVAIMGTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 297 r~LlVlDdv~~~--~~~~~~~~~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
-+|++||+... +...+-.+...+. ..|..||+|++. +++..++....++++++++.++-.+++.++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999543 1222223322222 236789998874 334455566678999999999999999988
Q ss_pred hcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHH
Q 000568 366 SLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 401 (1416)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 401 (1416)
+-... ...+ +++.+-|++.+.|..-++..+-.
T Consensus 166 ~~~~~-~~l~---~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 166 FADRQ-LYVD---PHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHcC-CCCC---HHHHHHHHHHhhhhHHHHHHHHH
Confidence 74322 1222 35666788888887776664333
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00013 Score=77.70 Aligned_cols=187 Identities=13% Similarity=0.164 Sum_probs=102.9
Q ss_pred eeee-hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHH
Q 000568 192 VYGR-ETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 192 ~vGr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 270 (1416)
++|. .+..-...+.+.... +.....+.|+|..|+|||.|.+++++.......-..+++++ ..+....+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHH
Confidence 4564 333344444454432 22455688999999999999999998532211112355553 3345555555
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh-hhHhh-hcccccc-CCCCcEEEEEccch---------HH
Q 000568 271 CITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-NDWVD-MSRPLEA-GAPGSKIIVTTRNQ---------EV 338 (1416)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~-~~~~l~~-~~~gs~iivTtR~~---------~v 338 (1416)
.+... ..+ .+++.++ .-=+|++||++.... ..|.. +...+.. ...|.+||+|++.. ++
T Consensus 82 ~~~~~-----~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 82 ALRDG-----EIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHTT-----SHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHcc-----cch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 44331 122 2333333 234889999976432 22332 2222211 13467899999653 34
Q ss_pred HHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHH
Q 000568 339 VAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 401 (1416)
Q Consensus 339 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 401 (1416)
..++....++++++++.++-.+++.+++...+- ..+ +++++-|++.+.+..-.+..+-.
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~-~l~---~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGI-ELP---EEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT---S----HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-CCc---HHHHHHHHHhhcCCHHHHHHHHH
Confidence 455556678999999999999999998853332 122 45667788888776665554433
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00027 Score=76.25 Aligned_cols=204 Identities=17% Similarity=0.169 Sum_probs=121.9
Q ss_pred Ceeeeeh---hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc----CcEEEEEecCCcCHH
Q 000568 190 AKVYGRE---TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF----DLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~ 262 (1416)
+.+||-. +.++++.+++... .....+-+.|||.+|+|||++++++...+-....- -.++.|.....++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3455543 3455666666543 34556779999999999999999999754222111 146677888889999
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc-cEEEEecccccc---C---hhhHhhhccccccCCCCcEEEEEccc
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK-KFLLVLDDVWNE---N---YNDWVDMSRPLEAGAPGSKIIVTTRN 335 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~---~---~~~~~~~~~~l~~~~~gs~iivTtR~ 335 (1416)
.+...|+.+++...........+...+.+.++.- --+||+|.+.+. . +.+.-.....+...-.=+-|.|-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 9999999999988766666666666655665433 348899999552 1 11222222333222234456666664
Q ss_pred hHHHHhh-----CCCCeeeCCCCChhh-HHHHHHHhh--cCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 336 QEVVAIM-----GTAPAYQLKRLSTDD-CLSVFTQHS--LDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 336 ~~v~~~~-----~~~~~~~l~~L~~~~-~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
.--+-.. +-..++.++....++ ...|+.... ..-..+.. -...++++.|...++|+.--+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHH
Confidence 3221110 112456677766654 444543332 11111111 2236789999999999874433
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-07 Score=96.93 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=74.1
Q ss_pred CCccEEEEecCCchh-hhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCC--CCCCCCcce
Q 000568 1131 QSLKFLDVWECPKLE-SIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEG--GLPCAKLTR 1207 (1416)
Q Consensus 1131 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~~L~~ 1207 (1416)
+.|++|||++-.++. .+...++.|.+|+.|.|.++.+...+...+..-.+|+.|+|+.|+.++..... +..|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 368999999887764 45667888999999999999988777677777788999999988877653221 122677777
Q ss_pred EEEccccCCCcCcc-ccc-CcCccceeeeecC
Q 000568 1208 LEISECERLEALPR-GLR-NLTCLQHLTIGDV 1237 (1416)
Q Consensus 1208 L~l~~n~~~~~~p~-~l~-~l~~L~~L~ls~n 1237 (1416)
|+|+.|.+....-. .+. --++|..|+++++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 77777776543211 111 1245666666665
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00014 Score=87.35 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=112.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+++..-.....+.. ....-...+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-------pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-------PCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-------CCcccHHHHHHh
Confidence 357899988888888885432 24677889999999999999998754321111000 000001111111
Q ss_pred HHhcCCC-----CCCCCHHHHHHHHHHH-----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHH
Q 000568 270 RCITKQT-----IDDSDLNLLQEELNKQ-----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEV 338 (1416)
Q Consensus 270 ~~l~~~~-----~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v 338 (1416)
....... .....++++. .+.+. ..+++-+||+|+++.-....++.+...+........+|++|.. ..+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred cCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 1100000 0001122211 12211 2356679999999877666677777777544345556665544 444
Q ss_pred HHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHHHHHh
Q 000568 339 VAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLGGLL 403 (1416)
Q Consensus 339 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~l 403 (1416)
...+ .....+++++++.++....+...+....... + .+.++.|++.++|.+ .|+..+...+
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i-d---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY-D---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3222 2235789999999999988887664332211 1 345667999999965 6777766554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.9e-07 Score=97.89 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=37.2
Q ss_pred cccCCCCcceEEEccCCCccccC-----CCCCCCCccEEeEccCCC---CCcCchhhh-----cCCCCCcCeeEEcc
Q 000568 985 SLLNLSSLREIYIRSCSSLVSFP-----EVALPSKLRLITIWDCEA---LKSLPEAWM-----CETNSSLEILNIAG 1048 (1416)
Q Consensus 985 ~l~~l~~L~~L~L~~n~~~~~~~-----~~~~~~~L~~L~l~~~~~---~~~~~~~~~-----~~~~~~L~~L~l~~ 1048 (1416)
.+....++++|++++|.+-..-. .+...+.|+..++++--. ...+|...- ...++.|+.|++|+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 45567888999999987654321 233455777777765431 112332211 14556788888887
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00024 Score=86.85 Aligned_cols=184 Identities=14% Similarity=0.122 Sum_probs=109.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc-cC------c---------EEEE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-FD------L---------KAWT 253 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~------~---------~~wv 253 (1416)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.++...-.... .. | ++++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 368999999999999986532 2466789999999999999999864321110 00 0 0111
Q ss_pred EecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEE-E
Q 000568 254 CVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKII-V 331 (1416)
Q Consensus 254 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-v 331 (1416)
....... ..+..++++.+... ..+++-++|+|++..-....+..+...+........+| +
T Consensus 93 daasn~~------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 93 DAASNNG------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred eccccCC------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEE
Confidence 1000000 01112222222211 23566699999997766667777777765544455544 4
Q ss_pred EccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHH
Q 000568 332 TTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLG 400 (1416)
Q Consensus 332 TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 400 (1416)
|++...+.... .....+++.+++.++....+...+-..+.... .+.++.|++.++|.+- |+..+-
T Consensus 155 Tte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 155 TTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred cCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 55555554332 23357999999999998888876533221111 2456679999999764 444333
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.3e-07 Score=94.66 Aligned_cols=180 Identities=18% Similarity=0.219 Sum_probs=105.3
Q ss_pred CccEEEeecCCCCcc-ccccccCCCCcceEEEccCCCccccC-CCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCee
Q 000568 967 KLEYLGLSYCQGLVT-LPQSLLNLSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEIL 1044 (1416)
Q Consensus 967 ~L~~L~Ls~n~~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 1044 (1416)
.|++||||+..+... +-.-+..+.+|+.|.|.++.+...+. .+....+|+.|+|+.|.-++......+..+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666544322 22234566667777766665544332 3455566777777777666655555555777778888
Q ss_pred EEccCCCcccc---cCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchh
Q 000568 1045 NIAGCSSLTYI---TGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATL 1121 (1416)
Q Consensus 1045 ~l~~c~~l~~l---~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~ 1121 (1416)
+|++|.-.+.. -...+.++|+.|++++|..--. .+....|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~------------------------~sh~~tL------------- 308 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ------------------------KSHLSTL------------- 308 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh------------------------hhHHHHH-------------
Confidence 88877533221 1114446666666666631100 0000000
Q ss_pred hccccCCCCCCccEEEEecCCch-hhhHHhhccCCcccEEeeccCCCcccccc---cccCCCCcceeeeccCC
Q 000568 1122 ESLEVGNLPQSLKFLDVWECPKL-ESIAERLNNNTSLEVIDIGNCENLKILPS---GLHNLCQLQRISIWCCG 1190 (1416)
Q Consensus 1122 ~~~~~~~l~~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~---~l~~l~~L~~L~L~~~~ 1190 (1416)
.... ++|..|||++|... ......+..++-|++|.++.|..+ +|. .+...|+|.+|++.+|-
T Consensus 309 ----~~rc-p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 ----VRRC-PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ----HHhC-CceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 1122 37888888887654 355566788888999999888743 343 35677888888887653
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.4e-06 Score=84.21 Aligned_cols=239 Identities=13% Similarity=0.055 Sum_probs=130.1
Q ss_pred ccEEEEecCCchh--hhHHhhccCCcccEEeeccCCCcc--cccccccCCCCcceeeeccCCCcccccCCCCCCCCcceE
Q 000568 1133 LKFLDVWECPKLE--SIAERLNNNTSLEVIDIGNCENLK--ILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRL 1208 (1416)
Q Consensus 1133 L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L 1208 (1416)
++-|.+.+|.+.. .....-..++.++.+||.+|.+.. .+...+.++|.|++|+|++|+....+..-..|..+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 4455555655532 233334567788888888888764 333456778888888888655444333333567789999
Q ss_pred EEccccCCC-cCcccccCcCccceeeeecCCCCCCCC--CCCCCCCCCcceeEecCCCCCcccccccCCCCCCCCCCCcc
Q 000568 1209 EISECERLE-ALPRGLRNLTCLQHLTIGDVLSPERDP--EDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQ 1285 (1416)
Q Consensus 1209 ~l~~n~~~~-~~p~~l~~l~~L~~L~ls~n~~~~~~~--~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~L~ 1285 (1416)
-|.+..+.- .....+..+|.++.|++|.|++..+.. .......+.+++|+..+|.......... .-..+|++.
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~----l~r~Fpnv~ 202 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK----LSRIFPNVN 202 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh----HHhhcccch
Confidence 988776542 233456778999999999995544322 2233444567777777775443221100 023345555
Q ss_pred eEEEeccCCcccccCCcccccCCCCcCcCCCCcccceeccccccCcccccCccccCCcCcEEecCCCCCCCCC---CCCC
Q 000568 1286 QLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFP---EKGL 1362 (1416)
Q Consensus 1286 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~---~~~~ 1362 (1416)
.+-+.+|+. ..... .++...+|.+--|+++.+. +.+.. .-.-
T Consensus 203 sv~v~e~Pl--K~~s~--------------------------------ek~se~~p~~~~LnL~~~~-idswasvD~Ln~ 247 (418)
T KOG2982|consen 203 SVFVCEGPL--KTESS--------------------------------EKGSEPFPSLSCLNLGANN-IDSWASVDALNG 247 (418)
T ss_pred heeeecCcc--cchhh--------------------------------cccCCCCCcchhhhhcccc-cccHHHHHHHcC
Confidence 555555421 11111 1122223444444444433 33221 1122
Q ss_pred ccccceeeecCChhhHHhhccCCCccccccCccceEEE-CCeecCcccccc
Q 000568 1363 PASLLRLEISGCPLIEERYIKDGGQYRHLLTYIPCIII-NGRPVDLDLKQR 1412 (1416)
Q Consensus 1363 ~~sL~~L~l~~cp~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 1412 (1416)
.++|..|.++.+|..+.. . .+..-.-.|+.+|++++ +|-.+..+.|.+
T Consensus 248 f~~l~dlRv~~~Pl~d~l-~-~~err~llIaRL~~v~vLNGskIss~er~d 296 (418)
T KOG2982|consen 248 FPQLVDLRVSENPLSDPL-R-GGERRFLLIARLTKVQVLNGSKISSRERKD 296 (418)
T ss_pred CchhheeeccCCcccccc-c-CCcceEEEEeeccceEEecCcccchhhhhh
Confidence 356666666666654321 1 01112356788999888 666776665443
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.8e-05 Score=86.21 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=98.8
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 261 (1416)
..++.|++..+++|.+.+...-.. +-...+-+.++|++|+|||++|+++++.. ...| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch----
Confidence 357899999999999877432110 11234568899999999999999999843 3232 22211
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC-----------hh---hHhhhcccccc--CCC
Q 000568 262 IRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN-----------YN---DWVDMSRPLEA--GAP 325 (1416)
Q Consensus 262 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~~~~~l~~--~~~ 325 (1416)
..+..... + .....+...+...-...+.+|++|+++... .. .+..+...+.. ...
T Consensus 190 ~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 11111110 0 001111112222223456899999996521 01 11122211211 124
Q ss_pred CcEEEEEccchHHH-Hhh----CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 326 GSKIIVTTRNQEVV-AIM----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 326 gs~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
+.+||.||...+.. ..+ .....+.++..+.++..++|..++.+.... ..-.+ ..+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCH----HHHHHHcCCCC
Confidence 66788888754322 111 123568999999999999999887543211 11223 34777787754
|
Many proteins may score above the trusted cutoff because an internal |
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00035 Score=83.19 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=111.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc--c----------------cC-cE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD--H----------------FD-LK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~----------------f~-~~ 250 (1416)
.+++|.+..++.+...+.... -..++.++|+.|+||||+|+.+++..-... . +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 368999999999999885432 245678999999999999998876421111 0 00 01
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCC
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPG 326 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~g 326 (1416)
+.+..+... ..+++.+.+... ..+++-++|+|++..-+.+..+.++..+......
T Consensus 89 ~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 112111111 122222222210 1245668999999877666777777777655556
Q ss_pred cEEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 327 SKIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 327 s~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
+++|++|.+. .+.... .....+++.+++.++....+.+.+-..+.... .+.++.|++.++|.+--+..+.
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 7777666553 222111 12357999999999998888776643332111 3466779999999885554443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.8e-06 Score=98.08 Aligned_cols=179 Identities=28% Similarity=0.360 Sum_probs=103.6
Q ss_pred cCCCccccceeeccCCCccccCccccccC-cccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCC
Q 000568 600 KLQQLRVFTVLNLSRTNIRNLPESITKLY-NLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCL 678 (1416)
Q Consensus 600 ~l~~L~~L~~L~Ls~~~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 678 (1416)
.+..+..+..|++.+|.++.+|..++.+. +|+.|++++| .+..+|..++.+++|+.|++++|. +..+|...+.+++|
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 33444566777777777777777777774 7777777774 566776677777777777777777 77777766666666
Q ss_pred cccCceEEcCCCCccccccccccccCcEeEeecCCCcCCccchHHhhcCCCCCCceEEEEecCCCCCCCCchhHHhhhcc
Q 000568 679 QTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDM 758 (1416)
Q Consensus 679 ~~L~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 758 (1416)
+.|.. .+..+..+... ......|++|.+..+. .......
T Consensus 189 ~~L~l------s~N~i~~l~~~-------------------------~~~~~~L~~l~~~~N~----------~~~~~~~ 227 (394)
T COG4886 189 NNLDL------SGNKISDLPPE-------------------------IELLSALEELDLSNNS----------IIELLSS 227 (394)
T ss_pred hheec------cCCccccCchh-------------------------hhhhhhhhhhhhcCCc----------ceecchh
Confidence 66611 11111111110 0111223333332110 0111222
Q ss_pred CCCCCCcceEEEeeeCCCCCCcCcCCCCCCCccEEEEeccCCCCCCCCCCCcCCcceeEecCCCCc
Q 000568 759 LKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGV 824 (1416)
Q Consensus 759 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l 824 (1416)
+....++..+.+.++....+|.++. .+++++.|++++|.+. .++.++.+.+|+.|+++++...
T Consensus 228 ~~~~~~l~~l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 228 LSNLKNLSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhhcccccccccCCceeeeccchhc--cccccceecccccccc-ccccccccCccCEEeccCcccc
Confidence 3344555555566666555566665 3667888888887764 3344777888888888775433
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00031 Score=82.42 Aligned_cols=181 Identities=14% Similarity=0.203 Sum_probs=103.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc------cccCcEE-EEEecCCcCHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ------DHFDLKA-WTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~~-wv~~~~~~~~~ 262 (1416)
.+++|.+...+.+...+.... -.+.+.++|++|+||||+|+.+.+..... ..|...+ -+......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 357899999999999985432 24688899999999999999997642211 1121111 1111111111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEc-cchHHHHh
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTT-RNQEVVAI 341 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~ 341 (1416)
+..+++++++... -..+++-++|+|+++......++.+...+......+.+|++| ....+...
T Consensus 91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111222211100 012445689999997654455666655554433345555554 33333222
Q ss_pred h-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 342 M-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 342 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
. .....++++++++++....+...+...+.. .+ .+.++.|++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHhCCCCHHHH
Confidence 1 223578999999999988888766433321 11 346677899999866533
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.6e-05 Score=80.26 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=114.6
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEE-EEecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAW-TCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i 268 (1416)
.+++|.+..+..+.+.+... ..++...+|++|.|||+.|.+++...--...|.+++- .++|...... +.++-
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 46889999999999988652 4688999999999999999999876544556665544 3444432221 11110
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHh--cccc-EEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHHHhh-C
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQL--SRKK-FLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAIM-G 343 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~ 343 (1416)
.. +...+.....+.. .-++ =.||||+++....+.|..+...+......++.|+.+-. ..+...+ .
T Consensus 109 ik----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 IK----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred hc----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 00 0010000000000 0123 37899999998889999999888776666775554443 2221111 1
Q ss_pred CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 344 TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 344 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
.-.-+..++|.+++...-++..+-.++...++ +..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcH
Confidence 11358899999999999888888655543333 34556999999843
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00036 Score=86.25 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=112.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++......... .....+.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988885432 245678999999999999999987432111100 000011112222222
Q ss_pred HHhcCCC-----CCCCCHHHHHH---HHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHH
Q 000568 270 RCITKQT-----IDDSDLNLLQE---ELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVV 339 (1416)
Q Consensus 270 ~~l~~~~-----~~~~~~~~~~~---~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 339 (1416)
....... ......+++.. .+... ..+++-++|+|+++.-.....+.+...+......+.+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 2111110 01112222221 11111 1245678999999766555666777666554455666665543 3333
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGG 401 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 401 (1416)
..+ .....+.+..++.++....+.+.+...+... + .+.+..|++.++|.+..+...-.
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~---~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-E---PGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 2235688999999998888887764332211 1 34567799999998865554433
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.9e-05 Score=84.76 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=63.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC--cCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND--FDVIRLTKTILRCITKQTIDDSDLN------LLQE 287 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~ 287 (1416)
....++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.++..+-....+..... .+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 35688999999999999999999865433 8999999998866 6888999988655544333322111 1111
Q ss_pred HHHHH-hccccEEEEecccc
Q 000568 288 ELNKQ-LSRKKFLLVLDDVW 306 (1416)
Q Consensus 288 ~l~~~-l~~kr~LlVlDdv~ 306 (1416)
..... -.+++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 12221 35889999999993
|
Members of this family differ in the specificity of RNA binding. |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00035 Score=84.54 Aligned_cols=198 Identities=13% Similarity=0.116 Sum_probs=112.8
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++........+ +..+... ...+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhh
Confidence 468999999999999985432 245678999999999999999987432211110 0000000 0011110
Q ss_pred HHhc-------CCCCCCCCHHH---HHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchH
Q 000568 270 RCIT-------KQTIDDSDLNL---LQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQE 337 (1416)
Q Consensus 270 ~~l~-------~~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~ 337 (1416)
..-. ........+++ +.+.+... ..+++-++|+|++..-+....+.++..+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 0000 00000111222 22222111 134566899999987776778888777766555666555 444444
Q ss_pred HHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHHHHh
Q 000568 338 VVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLGGLL 403 (1416)
Q Consensus 338 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~~~l 403 (1416)
+...+ .....+++..++.++..+.+.+.+...+... + .+....|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-D---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44332 2346799999999998888877654332211 1 2355668999999774 444444433
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00036 Score=85.11 Aligned_cols=201 Identities=16% Similarity=0.148 Sum_probs=111.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE-ecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC-VSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 268 (1416)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++........+...|.. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999998885432 245588999999999999999887543322111011110 00000000111111
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchHH
Q 000568 269 LRCITKQ-----TIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQEV 338 (1416)
Q Consensus 269 l~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v 338 (1416)
...-... .......+++...+... ..+++-++|+|+++.-.....+.+...+..-...+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 00111233333322222 235566899999977665667777777765444555554 5444444
Q ss_pred HHh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHH
Q 000568 339 VAI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 399 (1416)
Q Consensus 339 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 399 (1416)
... ......+++.+++.++....+.+.+...+..- + .+.++.|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I-~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI-D---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHhCCCHHHHHHHH
Confidence 433 23346799999999998888876553222111 1 3466779999999654 44433
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00057 Score=81.66 Aligned_cols=184 Identities=14% Similarity=0.144 Sum_probs=107.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc--c-----------------ccCcE
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ--D-----------------HFDLK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-----------------~f~~~ 250 (1416)
.+++|.+.-++.+..++.... -...+.++|+.|+||||+|+.++...... . .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 358899999999999985432 24566789999999999999987642110 0 01111
Q ss_pred EEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 251 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
.++..+....+. +...+.+.+... ..+++-++|+|+++.-.....+.+...+........+
T Consensus 91 ~eidaas~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 222111111111 111111111111 1356679999999766555666776666554445555
Q ss_pred EE-EccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 330 IV-TTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 330 iv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
|+ ||+...+.... .....+.+.+++.++....+.+.+-..+.... .+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 54 44444433222 22357899999999988888876643222111 2455668899999776554444
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00052 Score=81.53 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=106.7
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc---------------------ccC
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD---------------------HFD 248 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~ 248 (1416)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...... +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999985432 246678999999999999999977432110 111
Q ss_pred cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhccccEEEEeccccccChhhHhhhccccccCCCCc
Q 000568 249 LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNK-QLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGS 327 (1416)
Q Consensus 249 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 327 (1416)
..++.......+.. ..++.+.+.. -..+++-++|+|+++.......+.+...+.....+.
T Consensus 92 -~~~i~g~~~~gid~------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGIED------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCHHH------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 11111111111111 1111111110 012566789999997655455666666665544466
Q ss_pred EEEEEcc-chHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHH
Q 000568 328 KIIVTTR-NQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTLG 400 (1416)
Q Consensus 328 ~iivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 400 (1416)
.+|++|. ...+...+ .....+++.++++++....+.+.+-..+... + .+.++.|++.++|.+- |+..+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i-~---~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET-S---REALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 6666554 33332221 2235789999999999888877653322111 1 3466779999999764 444433
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00043 Score=82.18 Aligned_cols=170 Identities=12% Similarity=0.101 Sum_probs=101.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-+.|+|..|+|||+|++++.+.......-..+++++ ..++...+...+.... .....+++.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhcc-
Confidence 45688999999999999999988432111112234443 3355666665554210 112334444333
Q ss_pred cEEEEeccccccCh-hhH-hhhcccccc-CCCCcEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHHHHH
Q 000568 297 KFLLVLDDVWNENY-NDW-VDMSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 r~LlVlDdv~~~~~-~~~-~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
.-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+..++...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34788999965421 122 223332221 12355788887642 2334444556788999999999999998
Q ss_pred hhcCCCC-CCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 365 HSLDSRD-FSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 365 ~~~~~~~-~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
++-..+- ..-+ +++..-|++.++|.|-.+..+...+
T Consensus 287 ~~~~~gl~~~l~---~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIKQEVT---EEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCCCCCC---HHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8743221 0111 4577789999999998777555433
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.6e-05 Score=84.65 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=73.8
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++++.+...+.+...|... +.+.++|++|+|||++|+++++.......|+.+.||.+....+..+.+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 45788899999999998643 467889999999999999999865445577888999999888766655422
Q ss_pred HHhcCCCCCCC-CHHHHHHHHHHHhc--cccEEEEeccccccChh
Q 000568 270 RCITKQTIDDS-DLNLLQEELNKQLS--RKKFLLVLDDVWNENYN 311 (1416)
Q Consensus 270 ~~l~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~ 311 (1416)
......-. ......+.+.+... ++++++|+|++...+.+
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ 287 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS 287 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH
Confidence 11100000 00112222333322 46899999999776533
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00046 Score=87.14 Aligned_cols=177 Identities=12% Similarity=0.105 Sum_probs=110.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccC---------------------
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD--------------------- 248 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--------------------- 248 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+.........
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 368999999999999986432 235678999999999999999987543221110
Q ss_pred cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-----hccccEEEEeccccccChhhHhhhccccccC
Q 000568 249 LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAG 323 (1416)
Q Consensus 249 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~ 323 (1416)
.+++++.... ..++++.+ +++. ..+++-++|||+++..+...++.++..+..-
T Consensus 90 dv~eidaas~---------------------~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 90 DVTEIDAASH---------------------GGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred cEEEeccccc---------------------CCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 0112211111 12222222 1111 2355568899999887777888888888765
Q ss_pred CCCcEEEEEcc-chHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 324 APGSKIIVTTR-NQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 324 ~~gs~iivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
...+.+|++|. ...+...+ .....|++..++.++..+++.+.+-..+... . .+....|++.++|.+..+.
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d---~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-E---PGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHH
Confidence 55666665554 34444332 2346799999999998888877653222111 1 2345668999999884443
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00032 Score=77.66 Aligned_cols=161 Identities=13% Similarity=0.126 Sum_probs=80.8
Q ss_pred eeeeehhHHHHHHHHHhc---------CCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH
Q 000568 191 KVYGRETEKKEIVELLLR---------DDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 261 (1416)
.++|.+..+++|.+.... .+....+...-+.++|++|+||||+|+.++......+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478988777776543211 11112234566789999999999999999864211111111122333221
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC--------hhhHhhhccccccCCCCcEEEEEc
Q 000568 262 IRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN--------YNDWVDMSRPLEAGAPGSKIIVTT 333 (1416)
Q Consensus 262 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~~~~~l~~~~~gs~iivTt 333 (1416)
++. ....+ .........+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 84 -~l~----~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLV----GEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhh----hhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 11110 1112222222222 13488999996421 112233444333333333555555
Q ss_pred cchHHHH------hh--CCCCeeeCCCCChhhHHHHHHHhhc
Q 000568 334 RNQEVVA------IM--GTAPAYQLKRLSTDDCLSVFTQHSL 367 (1416)
Q Consensus 334 R~~~v~~------~~--~~~~~~~l~~L~~~~~~~lf~~~~~ 367 (1416)
...+... .+ .....+.+++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4432211 11 1124588899999999988887763
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.001 Score=69.58 Aligned_cols=195 Identities=16% Similarity=0.163 Sum_probs=101.8
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+|||.+.-++++.=.+..... .....--+.++|++|.||||||..+++...+. + -+..+....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccChhhHHHHH
Confidence 4699999999988877765433 44567889999999999999999999854322 1 111111111112222333
Q ss_pred HHhcCCCCC-CCCHHHH----HHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHHhhC-
Q 000568 270 RCITKQTID-DSDLNLL----QEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMG- 343 (1416)
Q Consensus 270 ~~l~~~~~~-~~~~~~~----~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~- 343 (1416)
..+...+.- .++...+ .+.+--.+.+=+.=|++.--... ..+.-.++++ +-|=.|||...+..-+.
T Consensus 99 t~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~A-----rsv~ldLppF---TLIGATTr~G~lt~PLrd 170 (332)
T COG2255 99 TNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAA-----RSIRLDLPPF---TLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCcc-----ceEeccCCCe---eEeeeccccccccchhHH
Confidence 333222100 0000000 01111112222222222211100 1122222222 12335888754433322
Q ss_pred -CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 344 -TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 344 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
..-+.+++..+.+|-.++..+.|..-.. ... ++.+.+|+++..|-|--+.-+-+..
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~---~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKILGI-EID---EEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCC---hHHHHHHHHhccCCcHHHHHHHHHH
Confidence 2356889999999999999888732221 111 3567789999999996544444333
|
|
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0026 Score=72.84 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=115.8
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-----cCHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-----FDVIR 263 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~ 263 (1416)
.+..|+|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+.. .+ .++++++..- .+...
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHH
Confidence 345678885566666666543 2589999999999999999998744332 23 3557766542 23454
Q ss_pred HHHHHHH----HhcCCCC-------CCCCHHHHHHHHHHHh---ccccEEEEeccccccCh-----hhHhhhcccccc-C
Q 000568 264 LTKTILR----CITKQTI-------DDSDLNLLQEELNKQL---SRKKFLLVLDDVWNENY-----NDWVDMSRPLEA-G 323 (1416)
Q Consensus 264 ~~~~il~----~l~~~~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~-----~~~~~~~~~l~~-~ 323 (1416)
.++.+.. ++..... ...........+.+++ .+++.+|++|+|+.... .++-.+...+-. .
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 5554444 4433210 0112223333444433 26799999999975321 122221111111 1
Q ss_pred C----CCcEEEEEccchH--HHHh-----hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCC
Q 000568 324 A----PGSKIIVTTRNQE--VVAI-----MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGL 392 (1416)
Q Consensus 324 ~----~gs~iivTtR~~~--v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 392 (1416)
. ...-.+|...+.+ .... ......++|++++.+|...|..++.... . ....++|...+||+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~---~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----S---QEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----C---HHHHHHHHHHHCCC
Confidence 0 1122222222211 1111 1122468999999999999998764221 1 12277799999999
Q ss_pred hHHHHHHHHHhccC
Q 000568 393 PLAAKTLGGLLRGK 406 (1416)
Q Consensus 393 PLai~~~~~~l~~~ 406 (1416)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999764
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00092 Score=74.31 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=72.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.++|++|+||||+|+.++......+.-...-|+.++.. . +.....+.. .......+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~----l~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----D----LVGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----H----HHHHHhccc-----hHHHHHHHHHc---c
Confidence 345788999999999999999764211111111224444421 2 222221111 11122223322 2
Q ss_pred cEEEEecccccc---------ChhhHhhhccccccCCCCcEEEEEccchHHHHhh--------CCCCeeeCCCCChhhHH
Q 000568 297 KFLLVLDDVWNE---------NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIM--------GTAPAYQLKRLSTDDCL 359 (1416)
Q Consensus 297 r~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~ 359 (1416)
.-+|++|++..- ..+....+...+.....+.+||+++....+.... .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 348999999642 1112223333343444456777777644332211 12357899999999998
Q ss_pred HHHHHhhc
Q 000568 360 SVFTQHSL 367 (1416)
Q Consensus 360 ~lf~~~~~ 367 (1416)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 88887764
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00077 Score=82.97 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=110.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc---------------------cccC
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ---------------------DHFD 248 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~ 248 (1416)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+....... .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 368999999999999985432 24568899999999999999887743211 1222
Q ss_pred cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcE
Q 000568 249 LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSK 328 (1416)
Q Consensus 249 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 328 (1416)
+..++.+....+.. +++++.++.... +.+++=++|+|++..-+...++.+...+..-..++.
T Consensus 92 -~~~ld~~~~~~vd~-Ir~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 -IHELDAASNNSVDD-IRNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred -eEEecccccCCHHH-HHHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 11222221111111 111222111000 124556889999987766677788877766545666
Q ss_pred EEE-EccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 329 IIV-TTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 329 iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
+|+ |++...+...+ .....+++.+++.++....+.+.+-..+.... .+.+..|++.++|..--+.
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 655 44544444332 23467999999999999888876643322111 2456679999999765443
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00076 Score=70.41 Aligned_cols=126 Identities=24% Similarity=0.279 Sum_probs=72.4
Q ss_pred ccCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 187 VNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
+.-.+++|.|.+++.|++-...-- .+....-+.+||..|.|||++++++.+....++ .--|.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH--------
Confidence 445679999999999887553211 122345677899999999999999987432222 112223221
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhcccccc---CCC-CcEEEEEccchHHH
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEA---GAP-GSKIIVTTRNQEVV 339 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~---~~~-gs~iivTtR~~~v~ 339 (1416)
+-.+...+.+.++. ...||+|.+||+.-+ ....+..++..+.. ..+ ...|-+||-.++..
T Consensus 90 -----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 -----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 11233344444442 356999999998432 22345555554432 223 33344566555544
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00089 Score=82.39 Aligned_cols=197 Identities=13% Similarity=0.175 Sum_probs=110.7
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-...... ... .....-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~~----~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PTP----EPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CCC----CCCcccHHHHHHh
Confidence 358899999999999886532 235678999999999999999987542211110 000 0111111222222
Q ss_pred HHhcCC-----CCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHH
Q 000568 270 RCITKQ-----TIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVV 339 (1416)
Q Consensus 270 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 339 (1416)
...... .......+++.+.+... ..+++-++|+|+++.-....++.++..+..-.....+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 211110 00111222222222111 1245568999999876666777787777654445555554443 3333
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
..+ .....+++..++.++....+.+.+...+.. .. .+.+..|++.++|.+..+...-
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 222 223568888999998888777665332211 11 2456779999999886554433
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0015 Score=71.21 Aligned_cols=168 Identities=18% Similarity=0.202 Sum_probs=106.0
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
++.|.+|+.++..+..++...+ ..-+..|.|+|-.|.|||.+.+++.+.... ..+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHH
Confidence 4568899999999999886542 123566799999999999999999985422 36899999999999999999
Q ss_pred HHHhcCCCCCCC-------CHHHHHHHHHH--Hhc--cccEEEEeccccccChhhHhhhc-cc---ccc-CCCCcEEEEE
Q 000568 269 LRCITKQTIDDS-------DLNLLQEELNK--QLS--RKKFLLVLDDVWNENYNDWVDMS-RP---LEA-GAPGSKIIVT 332 (1416)
Q Consensus 269 l~~l~~~~~~~~-------~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~~~~-~~---l~~-~~~gs~iivT 332 (1416)
+.+.+..+.+.. .....+..+.+ ... ++.++||||+++.- .+.+.+. .. +.. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 999863222221 12223333333 122 45899999999653 1222111 00 111 1122334444
Q ss_pred ccchHHHHh---hCCC--CeeeCCCCChhhHHHHHHHhh
Q 000568 333 TRNQEVVAI---MGTA--PAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 333 tR~~~v~~~---~~~~--~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
+-...-... .++. .++..+.-+.+|..+++.+.-
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 443222222 2332 356778889999999886643
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00018 Score=84.16 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 261 (1416)
..++.|++..++++.+.+...-.. +-...+-|.++|++|+|||++|+++++.. ... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh----
Confidence 347899999999998876321110 11335678899999999999999999842 222 232221
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEecccccc-----------ChhhHhhhcccc---cc--CCC
Q 000568 262 IRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE-----------NYNDWVDMSRPL---EA--GAP 325 (1416)
Q Consensus 262 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~~~~~l---~~--~~~ 325 (1416)
..+. ....+ .....+...+...-...+.+|++||++.- +...+..+...+ .. ...
T Consensus 199 ~~l~----~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELV----QKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHh----Hhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111 11110 01111111222222345689999999652 011111222222 11 123
Q ss_pred CcEEEEEccchHHHH-hh----CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCC
Q 000568 326 GSKIIVTTRNQEVVA-IM----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGL 392 (1416)
Q Consensus 326 gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 392 (1416)
+..||.||...+... .+ .....+.++..+.++-.++|+.+..+..- ...-.+ ..+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCC
Confidence 567777777643221 11 12356899999999999999987643221 111223 3366677664
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0012 Score=69.98 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=80.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
+.+.|+|++|+|||+|++.+++... . .++. ..... + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6789999999999999998877432 1 1111 00000 0 001 123
Q ss_pred EEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-------HHHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCC
Q 000568 298 FLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-------EVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSR 370 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 370 (1416)
-++++||+..-.......+...+. ..|..||+|++.. +...++....++++++++.++-..++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899995321111111211121 3466899998853 2334445556899999999998888877764221
Q ss_pred CCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000568 371 DFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 371 ~~~~~~~~~~~~~~i~~~~~glPLai~~ 398 (1416)
...+ +++.+-|++++.|---.+.-
T Consensus 165 -l~l~---~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 165 -VTIS---RQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred -CCCC---HHHHHHHHHHccCCHHHHHH
Confidence 1122 45667788888876554443
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0017 Score=79.01 Aligned_cols=194 Identities=14% Similarity=0.118 Sum_probs=111.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..-....... ..+....+- +++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 368999999999999986532 2467889999999999999999875322111000 000000000 1110
Q ss_pred HHhcC-----CCCCCCCHHHHHHHH---HH-HhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHH
Q 000568 270 RCITK-----QTIDDSDLNLLQEEL---NK-QLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVV 339 (1416)
Q Consensus 270 ~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 339 (1416)
..-.. ........+++.... .. -..+++-++|+|++..-+...++.+...+........+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00000 000011222222221 11 12356668999999777666777787777654456666655543 3343
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
..+ .....+++.+++.++..+.+.+.+...+.... .+.+..|++.++|.+-.+...
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 322 22356899999999998888877643332111 345666999999987554433
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=73.78 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccE
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKF 298 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 298 (1416)
-+.++|++|+|||++|+.++......+.....-|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 578999999999999987776322122221123444432 11 222222211 11222223322 235
Q ss_pred EEEecccccc---------ChhhHhhhccccccCCCCcEEEEEccchHHHHhh--------CCCCeeeCCCCChhhHHHH
Q 000568 299 LLVLDDVWNE---------NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIM--------GTAPAYQLKRLSTDDCLSV 361 (1416)
Q Consensus 299 LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l 361 (1416)
+|+||++..- ....+..+...+.....+.+||+++......... .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 1122334444444444566777776543222211 1235689999999999999
Q ss_pred HHHhh
Q 000568 362 FTQHS 366 (1416)
Q Consensus 362 f~~~~ 366 (1416)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 88776
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0009 Score=82.24 Aligned_cols=194 Identities=15% Similarity=0.184 Sum_probs=106.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-.....+. .....-...++|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 468999999999999885432 2456789999999999999999875321111000 0000000001110
Q ss_pred HHhcCC-----CCCCCCHHH---HHHHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchHHH
Q 000568 270 RCITKQ-----TIDDSDLNL---LQEELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQEVV 339 (1416)
Q Consensus 270 ~~l~~~-----~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~ 339 (1416)
..-... .......++ +...+... ..+++-++|+|+++.-+....+.+...+..-...+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 000000 000011122 22111111 124455899999977666667777777765445666665 54444444
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTL 399 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~ 399 (1416)
..+ .....+++.+++.++....+...+-..+.... .+.+..|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 332 22356889999999988877765532221111 345566899999866 444444
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=3.2e-06 Score=97.88 Aligned_cols=126 Identities=19% Similarity=0.166 Sum_probs=91.2
Q ss_pred CccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEEc
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEIS 1211 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~ 1211 (1416)
.|...+.+.|.+. .+...+.-++.|+.|+|++|++.... .+..++.|++|||++|. +..+|.-...--.|..|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeec
Confidence 5777777777654 45566778889999999999977643 67889999999998654 44444322222249999999
Q ss_pred cccCCCcCcccccCcCccceeeeecCCCCCCCCCCC-CCCCCCcceeEecCCCC
Q 000568 1212 ECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDE-DRLPTNLHSLNIDNMKS 1264 (1416)
Q Consensus 1212 ~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~-~~l~~~L~~L~l~~~~~ 1264 (1416)
+|.+... ..+.++.+|+.||+++|-+.+.....+ ..+ ..|+.|.+.||+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcc
Confidence 9987633 367889999999999997776544332 334 5888889988874
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.4e-05 Score=56.40 Aligned_cols=33 Identities=36% Similarity=0.519 Sum_probs=21.4
Q ss_pred ccceeeccCCCccccCccccccCcccEEecCCC
Q 000568 606 VFTVLNLSRTNIRNLPESITKLYNLHTLLLEDC 638 (1416)
Q Consensus 606 ~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 638 (1416)
.|++|++++|+|+.+|..|++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 456677777777777666777777777777765
|
... |
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00059 Score=78.49 Aligned_cols=148 Identities=12% Similarity=0.159 Sum_probs=84.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+...+.+..++.... -..++.++|++|+||||+|+.+++.. ... ...++.+. ... ...+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccH-HHHHHHH
Confidence 468999999999999985432 35677789999999999999998743 111 23344433 111 1111111
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhccccccCCCCcEEEEEccchH-HHHhh-CCCC
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRNQE-VVAIM-GTAP 346 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~ 346 (1416)
..+... ..+.+.+-++|+||++.. .......+...+.....++++|+||.... +...+ ....
T Consensus 89 ~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 111000 001234568899999755 22223334433444446778888886532 11111 1224
Q ss_pred eeeCCCCChhhHHHHHHH
Q 000568 347 AYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 347 ~~~l~~L~~~~~~~lf~~ 364 (1416)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 567777777777665543
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0017 Score=79.32 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=107.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+....-....-+ ....+.-...+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986542 246677899999999999999976432111000 00000001111111
Q ss_pred HHhcCCC-----CCCCCHHHHH---HHHHHH-hccccEEEEeccccccChhhHhhhccccccCCCCcEEEE-EccchHHH
Q 000568 270 RCITKQT-----IDDSDLNLLQ---EELNKQ-LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIV-TTRNQEVV 339 (1416)
Q Consensus 270 ~~l~~~~-----~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~ 339 (1416)
....... ......+++. ..+... ..+++-++|+|++..-....+..+...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 1100000 0011122222 111110 135566889999977666677777776655434555554 44444333
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
... .....+++.+++.++....+...+-..+.... .+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 222 22356889999999988888776633221111 2456678889998775444
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0015 Score=77.67 Aligned_cols=161 Identities=13% Similarity=0.158 Sum_probs=91.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.|+|..|+|||+||+++++....+..-..+++++. .++..++...+... ..+. +.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHHh-
Confidence 456889999999999999999985322111123455543 23344444444321 2222 3333332
Q ss_pred cEEEEeccccccChh-hH-hhhcccccc-CCCCcEEEEEccch-H--------HHHhhCCCCeeeCCCCChhhHHHHHHH
Q 000568 297 KFLLVLDDVWNENYN-DW-VDMSRPLEA-GAPGSKIIVTTRNQ-E--------VVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~-~~-~~~~~~l~~-~~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
.-+|||||++..... .+ +.+...+.. ...|..+|+|+... . +..++.....+.+++.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 238889999653211 11 122222211 12355678877642 1 222233335689999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 365 HSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
.+..... ..+ +++...|++.+.|..-.+.
T Consensus 280 ~~~~~~~-~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 280 KAEEEGL-ELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCCHHHHH
Confidence 8754322 122 4566778888888766444
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0013 Score=78.11 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccC-cEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD-LKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
..-+.|+|.+|+|||+||+++++... +.+.. .++|++. .++..++...+... ..++ +++.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 44589999999999999999998532 11222 3556643 34555555554321 1222 3333333
Q ss_pred ccEEEEeccccccC-hhhH-hhhcccccc-CCCCcEEEEEcc-chH--------HHHhhCCCCeeeCCCCChhhHHHHHH
Q 000568 296 KKFLLVLDDVWNEN-YNDW-VDMSRPLEA-GAPGSKIIVTTR-NQE--------VVAIMGTAPAYQLKRLSTDDCLSVFT 363 (1416)
Q Consensus 296 kr~LlVlDdv~~~~-~~~~-~~~~~~l~~-~~~gs~iivTtR-~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~ 363 (1416)
+.-+|++||++... ...+ +.+...+.. ...|..||+||. .+. +..++....++++++.+.++-.+++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 45589999996431 1111 122222211 123457888875 321 12223344578999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 364 QHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
+.+..... ..+ +++..-|++.+.|.--.+.
T Consensus 274 ~~~~~~~~-~l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 274 KMLEIEHG-ELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHhcCC-CCC---HHHHHHHHhccccCHHHHH
Confidence 88743221 222 3567778888888654444
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00072 Score=86.25 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=84.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc---ccccc-CcEEEEEecCCcCHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR---VQDHF-DLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 265 (1416)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|. +. ...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHHh
Confidence 368999999999999885432 23456999999999999999987431 11111 334442 11 11111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-ccccEEEEeccccccC---------hhhHhhhccccccCCCC-cEEEEEcc
Q 000568 266 KTILRCITKQTIDDSDLNLLQEELNKQL-SRKKFLLVLDDVWNEN---------YNDWVDMSRPLEAGAPG-SKIIVTTR 334 (1416)
Q Consensus 266 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~g-s~iivTtR 334 (1416)
.. ... ..+.++.+..+-+.+ +.++.+|++|++..-. .+.-+.+...+. .| -++|-+|.
T Consensus 251 ----a~---~~~-~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt 319 (731)
T TIGR02639 251 ----AG---TKY-RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTT 319 (731)
T ss_pred ----hh---ccc-cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecC
Confidence 00 000 012222222222222 3457899999996321 111122222222 23 34555554
Q ss_pred chHHHHh-------hCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 335 NQEVVAI-------MGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 335 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
..+.... ......++++.++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4222111 1123578999999999999998654
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.003 Score=71.17 Aligned_cols=197 Identities=14% Similarity=0.124 Sum_probs=113.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc-------------cccCcEEEEEec
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ-------------DHFDLKAWTCVS 256 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------~~f~~~~wv~~~ 256 (1416)
.+++|.+..++.+...+..+. -.....++|+.|+||+++|..+++..-.. .......|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 358899999999999985542 24788999999999999998887642111 112233444321
Q ss_pred CCcCHHHHHHHHHHHhc--CCCCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEE
Q 000568 257 NDFDVIRLTKTILRCIT--KQTIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 257 ~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
...+-..+...-++..+ ......-.++++ +.+.+.+ .+++-++|+|+++..+....+.++..+..-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000011111111 001111222332 2233333 3567799999998776677777777775443 3455
Q ss_pred EEEc-cchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 330 IVTT-RNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 330 ivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
|++| +...+.... .....+++.++++++..+.+.+...... .. .....++..++|.|..+..+.
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~~----~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---LN----INFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---ch----hHHHHHHHHcCCCHHHHHHHH
Confidence 5444 444433332 2336799999999999999988742111 01 113468999999997665433
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.004 Score=73.74 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=86.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-+.|+|+.|+|||+||+++++.... ....+++++. ..+...+...+... . ...+++.++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 456889999999999999999985322 2233455542 33444444444321 1 122344333 3
Q ss_pred cEEEEeccccccChhhH--hhhcccccc-CCCCcEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHHHHH
Q 000568 297 KFLLVLDDVWNENYNDW--VDMSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~--~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
.-++++||+.......| +.+...+.. ...|..||+||... .+..++.....+.+.+++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34888899855321111 122222211 11355788888542 2223334446789999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhcCCC
Q 000568 365 HSLDSRDFSSNKSLEEIGKKIVIKCNGL 392 (1416)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~~gl 392 (1416)
++-.... ..+ +++..-|++.+.|.
T Consensus 283 k~~~~~~-~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSI-RIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCC
Confidence 8743321 222 34455566666644
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.44 E-value=2.7e-05 Score=92.91 Aligned_cols=196 Identities=24% Similarity=0.197 Sum_probs=110.3
Q ss_pred CccEEEeecCCCCccccccccCCCCcceEEEccCCCccccCCCCCCCCccEEeEccCCCCCcCchhhhcCCCCCcCeeEE
Q 000568 967 KLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNI 1046 (1416)
Q Consensus 967 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 1046 (1416)
.++.+++..|.+.. +-..+..+++|..|++.+|.+.........+++|++|++++|.+.+..+. ..++.|+.|++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhhee
Confidence 44555555555433 22245667777777777776554322255667777777777775444333 24455667777
Q ss_pred ccCCCcccccCCCCCCCCceEeeecCCCcccccccccccccCCccccccccceEEecCCCCcccccccCCCcchhhcccc
Q 000568 1047 AGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEV 1126 (1416)
Q Consensus 1047 ~~c~~l~~l~~~~~~~~L~~L~i~~~~~L~~l~~~~~~~~~~~~~~~~~~l~~l~i~~~~~L~~l~~~~~~~~~~~~~~~ 1126 (1416)
++|. +..+.+ +..
T Consensus 148 ~~N~-i~~~~~-----------------------------------------------~~~------------------- 160 (414)
T KOG0531|consen 148 SGNL-ISDISG-----------------------------------------------LES------------------- 160 (414)
T ss_pred ccCc-chhccC-----------------------------------------------Ccc-------------------
Confidence 6632 111110 000
Q ss_pred CCCCCCccEEEEecCCchhhhH-HhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCC-
Q 000568 1127 GNLPQSLKFLDVWECPKLESIA-ERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAK- 1204 (1416)
Q Consensus 1127 ~~l~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~- 1204 (1416)
+ .+|+.+++++|.+...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|. +..+- +...++.
T Consensus 161 --l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~-i~~~~-~l~~~~~~ 232 (414)
T KOG0531|consen 161 --L-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK-ISKLE-GLNELVML 232 (414)
T ss_pred --c-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc-ceecc-CcccchhH
Confidence 1 367777788877765443 2 56777888888888876542 223334444444554332 22221 1111223
Q ss_pred -cceEEEccccCCCcCcccccCcCccceeeeecCCCCCCC
Q 000568 1205 -LTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERD 1243 (1416)
Q Consensus 1205 -L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~ 1243 (1416)
|+.+++++|++... +..+..+..+..|++.+|++....
T Consensus 233 ~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 233 HLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred HHHHHhcccCccccc-cccccccccccccchhhccccccc
Confidence 78888888877632 245666778888888888766553
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=84.97 Aligned_cols=155 Identities=15% Similarity=0.219 Sum_probs=84.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc---c-ccCcEEE-EEecCCcCHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ---D-HFDLKAW-TCVSNDFDVIRL 264 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~w-v~~~~~~~~~~~ 264 (1416)
..+|||+.++.+++..|.... ..-+.++|.+|+||||+|+.++...... . -.+..+| +..+.-.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~----- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ----- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-----
Confidence 468999999999999885542 2345699999999999999998742111 1 1123333 2222100
Q ss_pred HHHHHHHhcCCCCCCCCH-HHHHHHHHHHh-ccccEEEEeccccccC-------hhhHhhhccccccCCCC-cEEEEEcc
Q 000568 265 TKTILRCITKQTIDDSDL-NLLQEELNKQL-SRKKFLLVLDDVWNEN-------YNDWVDMSRPLEAGAPG-SKIIVTTR 334 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~-~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~g-s~iivTtR 334 (1416)
.+... ..+. +.+...+.+.- .+++.+|++|++..-. ..+-..+..+.. ..| -++|-||.
T Consensus 256 --------ag~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT 324 (852)
T TIGR03345 256 --------AGASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATT 324 (852)
T ss_pred --------ccccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecC
Confidence 00000 0011 11122222221 2468999999985421 111111222222 233 46666666
Q ss_pred chHHHHh-------hCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 335 NQEVVAI-------MGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 335 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
..+.... ......+.+++++.++..+++....
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 5332111 1223579999999999999975443
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.003 Score=71.54 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=65.7
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCC
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDF 372 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 372 (1416)
+++-++|+|+++.-+....+.+...+..-..++.+|+||.+. .+.... .....+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 344456779998877777888888776655677777777764 333222 22356999999999999988765311 1
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 373 SSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 373 ~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
. .+.+..++..++|.|+.+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 223456789999999766544
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.002 Score=77.55 Aligned_cols=160 Identities=13% Similarity=0.177 Sum_probs=92.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccccc--CcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF--DLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL 293 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 293 (1416)
...-+.|+|.+|+|||+||+++++.. ...+ ..+++++.. .+..++...+... ..+ .+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHH
Confidence 34568999999999999999999853 2332 234455432 2333444444221 122 233333
Q ss_pred ccccEEEEeccccccChhh-H-hhhcccccc-CCCCcEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHH
Q 000568 294 SRKKFLLVLDDVWNENYND-W-VDMSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSV 361 (1416)
Q Consensus 294 ~~kr~LlVlDdv~~~~~~~-~-~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 361 (1416)
+ +.-+|||||++...... + +.+...+.. ...|..||+|+... .+..++....++++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 23488999996532111 1 222222211 11345678877643 1223344446799999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 362 FTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 362 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
+.+++..... ..+ +++..-|++.++|..-.+.
T Consensus 289 l~~~~~~~~~-~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGI-DLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCC-CCC---HHHHHHHHcCcCCCHHHHH
Confidence 9998753221 222 3567779999998776443
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00038 Score=68.28 Aligned_cols=22 Identities=41% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHccc
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999854
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00087 Score=86.59 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=84.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc---ccccc-CcEEEEEecCCcCHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR---VQDHF-DLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 265 (1416)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999996542 23456999999999999999987431 11111 344553 1 111111
Q ss_pred HHHHHHhcCCCCCCCCHHH-HHHHHHHHhccccEEEEeccccccC-------hhhHhhhccccccCCCCcEEEEEccchH
Q 000568 266 KTILRCITKQTIDDSDLNL-LQEELNKQLSRKKFLLVLDDVWNEN-------YNDWVDMSRPLEAGAPGSKIIVTTRNQE 337 (1416)
Q Consensus 266 ~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~iivTtR~~~ 337 (1416)
.+.... .+.++ +...+.+.-..++.+|++|++..-- ..+...+..+.... ..-++|.+|...+
T Consensus 248 -------ag~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred -------ccCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 111111 12222 2222222223568999999994210 00111222222111 1246666666554
Q ss_pred HHHh-------hCCCCeeeCCCCChhhHHHHHHHh
Q 000568 338 VVAI-------MGTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 338 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
.... ......+.+...+.++...+++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 3221 122356788888888888887643
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0068 Score=69.17 Aligned_cols=162 Identities=15% Similarity=0.198 Sum_probs=92.4
Q ss_pred CCeeeeehhHH-HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 189 EAKVYGRETEK-KEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 189 ~~~~vGr~~~~-~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
+.-++|-.... ..+...+... .+.....+.|||..|.|||.|++++.+. ...+......+.++ .+....+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~---~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAEN---PGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhc---cCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHH
Confidence 44456654333 2333333322 2235788999999999999999999984 33334322233332 2233344
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh-hhHh-hhcccccc-CCCCcEEEEEccch--------
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-NDWV-DMSRPLEA-GAPGSKIIVTTRNQ-------- 336 (1416)
Q Consensus 268 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~-~~~~~l~~-~~~gs~iivTtR~~-------- 336 (1416)
.+..+... -...+++.. .-=++++||++--.. +.|+ .+...+.. ...|-.||+|++..
T Consensus 158 ~v~a~~~~---------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 158 FVKALRDN---------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred HHHHHHhh---------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcccc
Confidence 44433321 123344444 334889999965211 1222 22222221 12344899999753
Q ss_pred -HHHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCC
Q 000568 337 -EVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSR 370 (1416)
Q Consensus 337 -~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 370 (1416)
.+..++...-++++.+++.+....++.+++....
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 3445555667899999999999999998774433
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0025 Score=76.51 Aligned_cols=161 Identities=11% Similarity=0.129 Sum_probs=92.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.|+|..|+|||.|++++++.......-..+++++. .++..++...+... .. ..+++.+++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~- 377 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE- 377 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc-
Confidence 345899999999999999999984321111123455543 33444444433211 11 223333333
Q ss_pred cEEEEeccccccCh-hhHh-hhcccccc-CCCCcEEEEEccch---------HHHHhhCCCCeeeCCCCChhhHHHHHHH
Q 000568 297 KFLLVLDDVWNENY-NDWV-DMSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 r~LlVlDdv~~~~~-~~~~-~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
-=+|||||+..... ..|. .+...+.. ...|..|||||+.. .+...+...-++.+...+.+.-.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 24788899965422 2222 22222211 12356788888852 2334445567899999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 365 HSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
++....- ..+ .++++-|++.+.+..-.+.
T Consensus 458 ka~~r~l-~l~---~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 458 KAVQEQL-NAP---PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHhcCC-CCC---HHHHHHHHHhccCCHHHHH
Confidence 8754322 222 3566667777776644333
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.34 E-value=4.4e-05 Score=91.07 Aligned_cols=107 Identities=22% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEEE
Q 000568 1131 QSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEI 1210 (1416)
Q Consensus 1131 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l 1210 (1416)
++|+.|++.+|.+..... .+..+++|++|++++|.+.... .+..++.|+.|++++|. +..+. ++..+++|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCc-chhcc-CCccchhhhcccC
Confidence 366777777766654321 1556667777777777665532 34555666777776433 33332 2222566667777
Q ss_pred ccccCCCcCc-ccccCcCccceeeeecCCCCCCC
Q 000568 1211 SECERLEALP-RGLRNLTCLQHLTIGDVLSPERD 1243 (1416)
Q Consensus 1211 ~~n~~~~~~p-~~l~~l~~L~~L~ls~n~~~~~~ 1243 (1416)
++|.+...-+ . +..+.+|+.+++++|.+..+.
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 7766653322 1 355666666777776555543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00021 Score=53.23 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=33.4
Q ss_pred CcccEEecCCCCchhhchHhhcccccCceeecCCcccccccc
Q 000568 628 YNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMP 669 (1416)
Q Consensus 628 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp 669 (1416)
++|++|++++| .+..+|..|++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 47999999996 677899889999999999999998 76654
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=1.7e-05 Score=92.13 Aligned_cols=146 Identities=23% Similarity=0.325 Sum_probs=83.7
Q ss_pred CCccEEEEecCCchhhh-HHhhccCCcccEEeeccCCCcccccccccCC-CCcceeeec-----------cCCCcccccC
Q 000568 1131 QSLKFLDVWECPKLESI-AERLNNNTSLEVIDIGNCENLKILPSGLHNL-CQLQRISIW-----------CCGNLVSFSE 1197 (1416)
Q Consensus 1131 ~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l-~~L~~L~L~-----------~~~~l~~~~~ 1197 (1416)
++++.|.+-.-+--+.. |-.+..+.+|+.|.+.+|.+... .++..+ ..|++|.-+ .|. ..+.
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascg--gd~~- 158 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCG--GDIS- 158 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhc--cccc-
Confidence 35666666554443332 55677888899999999886551 122111 123333211 011 1111
Q ss_pred CCCCCCCcceEEEccccCCCcCcccccCcCccceeeeecCCCCCCCCCCCCCCCCCcceeEecCCCCCcccccccCCCCC
Q 000568 1198 GGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGG 1277 (1416)
Q Consensus 1198 ~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~ 1277 (1416)
...++..|.+.+.+.|.+. .+..++.-++.|+.|+|++|.+..+. .+..+| .|++|||++|. +..++..+
T Consensus 159 ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~-~LkhLDlsyN~-L~~vp~l~----- 228 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLP-KLKHLDLSYNC-LRHVPQLS----- 228 (1096)
T ss_pred cchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc-cccccccccch-hccccccc-----
Confidence 1223567777888877765 44566777888888888888877765 445564 78888887753 44444322
Q ss_pred CCCCCCcceEEEecc
Q 000568 1278 LNRFSSLQQLRIRGR 1292 (1416)
Q Consensus 1278 l~~l~~L~~L~l~~~ 1292 (1416)
..++. |+.|.+++|
T Consensus 229 ~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 229 MVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhhhh-heeeeeccc
Confidence 23333 666666664
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.001 Score=77.69 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=87.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
.++.|.+..+++|.+.+...-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 35789999999888877421110 1123456889999999999999999984 33333 1121111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC-----------hh---hHhhhcccccc--CCCC
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN-----------YN---DWVDMSRPLEA--GAPG 326 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~~~~~l~~--~~~g 326 (1416)
+. ....+ .....+...+.....+.+.+|+||+++... .. ....+...+.. ...+
T Consensus 253 -L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11 11100 111112222333334567899999985320 00 01111111111 1235
Q ss_pred cEEEEEccchHHHHh-h-C---CCCeeeCCCCChhhHHHHHHHhhc
Q 000568 327 SKIIVTTRNQEVVAI-M-G---TAPAYQLKRLSTDDCLSVFTQHSL 367 (1416)
Q Consensus 327 s~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 367 (1416)
.+||+||...+.... + . ....++++..+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876543322 1 1 235689999999999999987763
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0024 Score=80.24 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=86.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccc---cc-cCcEEEEEecCCcCHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ---DH-FDLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~ 265 (1416)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.++...... .. .++.+|.. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~-- 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS-- 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH--
Confidence 358999999999999886532 2334689999999999999998742111 11 13444421 1111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-ccccEEEEecccccc--------ChhhHhhhccccccCCCCcEEEEEccch
Q 000568 266 KTILRCITKQTIDDSDLNLLQEELNKQL-SRKKFLLVLDDVWNE--------NYNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 266 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
++ .+... ..+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-+||-+|...
T Consensus 253 --ll---aG~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 253 --LL---AGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred --Hh---cccch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 11 01100 112222222222222 345689999999531 112222233333222 233555555544
Q ss_pred HHHHh-------hCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 337 EVVAI-------MGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 337 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
+.... .+-...+.++.++.++..+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 33211 1222579999999999999988654
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.012 Score=69.43 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=68.3
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
+.+-+|.++-+++|.+++.-....+.-+.+++..+|++|+|||.+|+.++... ...| +-++++.-.|+.++
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL--nRkF---fRfSvGG~tDvAeI---- 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL--NRKF---FRFSVGGMTDVAEI---- 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh--CCce---EEEeccccccHHhh----
Confidence 45678999999999999865444355678999999999999999999999843 2223 23455554444333
Q ss_pred HHHhcCC--CCCCCCHHHHHHHHHHHhccccEEEEeccccc
Q 000568 269 LRCITKQ--TIDDSDLNLLQEELNKQLSRKKFLLVLDDVWN 307 (1416)
Q Consensus 269 l~~l~~~--~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 307 (1416)
.+. ..-..-...+++.+++. +...=|+.+|.|+.
T Consensus 481 ----kGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 481 ----KGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ----cccceeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 111 11112233444444443 44567899999964
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0018 Score=64.60 Aligned_cols=87 Identities=18% Similarity=0.086 Sum_probs=46.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc-
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK- 296 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k- 296 (1416)
..+.|+|++|+||||+|+.++....... ..++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998532221 23555554443222111111 111111111222222233333333433
Q ss_pred cEEEEecccccc
Q 000568 297 KFLLVLDDVWNE 308 (1416)
Q Consensus 297 r~LlVlDdv~~~ 308 (1416)
..+|++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999765
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00036 Score=86.53 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=61.1
Q ss_pred hhcccCCCccccceeeccCCCcc--ccCccccc-cCcccEEecCCCCc-hhhchHhhcccccCceeecCCccccccccCC
Q 000568 596 HQLLKLQQLRVFTVLNLSRTNIR--NLPESITK-LYNLHTLLLEDCDR-LKTLCADIGNLIKLHHLKNSNTISLQEMPLR 671 (1416)
Q Consensus 596 ~~~~~l~~L~~L~~L~Ls~~~i~--~lp~~i~~-L~~L~~L~L~~~~~-~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 671 (1416)
+.+.+-..-.+|++||+++...- .-|..++. |+.|++|.+++=.. ..++-.-..++++|+.||+++++ +..+ .+
T Consensus 113 ~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~G 190 (699)
T KOG3665|consen 113 KDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SG 190 (699)
T ss_pred HHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HH
Confidence 33333344567889999986432 23556665 99999999988322 12334456789999999999998 8877 78
Q ss_pred cccccCCccc
Q 000568 672 FGKLTCLQTL 681 (1416)
Q Consensus 672 i~~L~~L~~L 681 (1416)
|++|++||+|
T Consensus 191 IS~LknLq~L 200 (699)
T KOG3665|consen 191 ISRLKNLQVL 200 (699)
T ss_pred HhccccHHHH
Confidence 9999999999
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.015 Score=65.31 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc----------------CcEEEEEecCCc
Q 000568 196 ETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF----------------DLKAWTCVSNDF 259 (1416)
Q Consensus 196 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----------------~~~~wv~~~~~~ 259 (1416)
+...+++...+..+. -...+.++|+.|+||+++|..++...-..... .-..|+......
T Consensus 10 ~~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~ 84 (319)
T PRK08769 10 QRAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR 84 (319)
T ss_pred HHHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc
Confidence 344566666664332 24578899999999999999887643222111 111222100000
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEcc
Q 000568 260 DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTR 334 (1416)
Q Consensus 260 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR 334 (1416)
. +........++++.+ +.+.+ .+++-++|+|+++..+...-+.++..+..-..++.+|++|.
T Consensus 85 ~------------~~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 85 T------------GDKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred c------------cccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEEC
Confidence 0 000000011222222 22222 24567999999987766666777777766556777777666
Q ss_pred ch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 335 NQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 335 ~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
.. .+.... .--..+.+.+++.+++.+.+.... . . ...+..++..++|.|+.+..+.
T Consensus 152 ~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~---~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 152 QPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V---S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C---C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 53 333222 223568899999999988887542 1 1 1235568999999998775444
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0018 Score=78.97 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=40.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+++|.+..++++..++..... .....+++.|+|++|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999865432 2233468999999999999999999874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0065 Score=69.46 Aligned_cols=162 Identities=10% Similarity=0.085 Sum_probs=90.5
Q ss_pred eee-ehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHH
Q 000568 192 VYG-RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 192 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 270 (1416)
++| .+..++.+...+.... -.....++|+.|+||||+|+.+.+..-........ .+... ...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHhc
Confidence 556 6667777777774432 35677899999999999999987643211101000 00000 00000000
Q ss_pred HhcCC------CCCCCCHHHHHHHHHHH----hccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHH
Q 000568 271 CITKQ------TIDDSDLNLLQEELNKQ----LSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVV 339 (1416)
Q Consensus 271 ~l~~~------~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~ 339 (1416)
.-..+ .......+++.+.+... ..+++=++|+|+++.-+....+.+...+..-..++.+|++|... .+.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 00000 00011223332222211 23455679999997776667777888877655677777777653 333
Q ss_pred Hhh-CCCCeeeCCCCChhhHHHHHHHh
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
... .....+++.+++.++..+.+...
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 222 23467999999999998888654
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0042 Score=80.64 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=83.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccc----cCcEEEE-EecCCcCHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH----FDLKAWT-CVSNDFDVIRL 264 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv-~~~~~~~~~~~ 264 (1416)
..++||+.++++++..|.... ..-+.++|++|+|||++|+.++....-... ....+|. .++ .+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------AL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HH
Confidence 358999999999999985432 244558999999999999998874311100 1223332 211 11
Q ss_pred HHHHHHHhcCCCCCCCCHHH-HHHHHHHHhc-cccEEEEeccccccC-------hhhHhhhccccccCCCC-cEEEEEcc
Q 000568 265 TKTILRCITKQTIDDSDLNL-LQEELNKQLS-RKKFLLVLDDVWNEN-------YNDWVDMSRPLEAGAPG-SKIIVTTR 334 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~g-s~iivTtR 334 (1416)
. . +.... .+.+. +...+.+.-+ +++.+|++|++..-. ..+...+..+.. ..| -++|.+|.
T Consensus 241 ~----a---~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt 310 (852)
T TIGR03346 241 I----A---GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATT 310 (852)
T ss_pred h----h---cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCc
Confidence 1 0 00000 11222 2222222212 468999999995321 011112222222 223 35555555
Q ss_pred chHHHHh-------hCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 335 NQEVVAI-------MGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 335 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
..+.-.. ......+.++..+.++...++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4433211 1223568899999999999887654
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00017 Score=75.24 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=52.0
Q ss_pred CCCcceEEEccccCCCc-CcccccCcCccceeeeecCCCCCCCC-CCCCCCCCCcceeEecCCCCCcccccccCCCCCCC
Q 000568 1202 CAKLTRLEISECERLEA-LPRGLRNLTCLQHLTIGDVLSPERDP-EDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLN 1279 (1416)
Q Consensus 1202 ~~~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~ls~n~~~~~~~-~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 1279 (1416)
+|++..+-+..|++-.. .......+|.+-.|+|+.|+|..-.. ..+.++ ++|.-|.+.++|...++-......--+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f-~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF-PQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC-chhheeeccCCcccccccCCcceEEEEe
Confidence 46788888888876532 23345556777788888887755433 234455 4888888888876665421100001246
Q ss_pred CCCCcceEEE
Q 000568 1280 RFSSLQQLRI 1289 (1416)
Q Consensus 1280 ~l~~L~~L~l 1289 (1416)
.|++++.|+=
T Consensus 277 RL~~v~vLNG 286 (418)
T KOG2982|consen 277 RLTKVQVLNG 286 (418)
T ss_pred eccceEEecC
Confidence 6777776643
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.016 Score=60.44 Aligned_cols=180 Identities=16% Similarity=0.182 Sum_probs=103.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe-cCCcCHHHHHHHHHHHhcCCCCCCCCHH----HHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV-SNDFDVIRLTKTILRCITKQTIDDSDLN----LLQEELN 290 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~----~~~~~l~ 290 (1416)
+.+++.|+|.-|.|||.+++++....- + +.++-+.+ ....+...+...++..+..+. ..... +..+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~-~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN-E---DQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-C---CceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHH
Confidence 346999999999999999995544221 1 12222333 334567788888888887632 22333 3333333
Q ss_pred HHh-cccc-EEEEeccccccChhhHhhhccccccCCCCc---EEEEEcc----ch---HHHHhhC--CCCeeeCCCCChh
Q 000568 291 KQL-SRKK-FLLVLDDVWNENYNDWVDMSRPLEAGAPGS---KIIVTTR----NQ---EVVAIMG--TAPAYQLKRLSTD 356 (1416)
Q Consensus 291 ~~l-~~kr-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs---~iivTtR----~~---~v~~~~~--~~~~~~l~~L~~~ 356 (1416)
+.. +++| ..+++||..+...+..+.++-...-...++ +|+..-. .+ .+..... ..-.|++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 4677 899999997765555554433221111111 2322211 10 1111111 1123899999999
Q ss_pred hHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHH
Q 000568 357 DCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGL 402 (1416)
Q Consensus 357 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 402 (1416)
+...+++.+..+...+.+-. -.+....|..+..|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~-~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLF-SDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccC-ChhHHHHHHHHhccchHHHHHHHHH
Confidence 98888887765443221111 1234456999999999999877644
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0028 Score=73.75 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=95.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
.++.|.+..+++|.+.+...-. -+-...+-+.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh------H
Confidence 4688999888888876632100 011345678899999999999999999842 2222 12211 1
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC----------hhh----Hhhhcccccc--CCCC
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN----------YND----WVDMSRPLEA--GAPG 326 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~~~~~l~~--~~~g 326 (1416)
.+ .....+ .....+...+.......+.+|++|+++..- ... +..+...+.. ...+
T Consensus 214 ~l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 111110 111122223333334568899999986420 001 1112222211 2235
Q ss_pred cEEEEEccchHHHH-h-hC---CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 327 SKIIVTTRNQEVVA-I-MG---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 327 s~iivTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
..||+||...+... . .. ....+.++..+.++..++|........ ....-++.+ +++.+.|.-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd~~~----la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVDLED----FVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccCHHH----HHHHcCCCC
Confidence 67888887654322 1 12 235688888888888888876653222 112223333 666666653
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.017 Score=64.68 Aligned_cols=177 Identities=13% Similarity=0.088 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC-
Q 000568 197 TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ- 275 (1416)
Q Consensus 197 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~- 275 (1416)
...+++.+.+..+ .-...+-+.|+.|+||+++|+.++...-....-+. .++.. ..-+.+...-..+
T Consensus 10 ~~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C----~sC~~~~~g~HPD~ 76 (319)
T PRK06090 10 PVWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFC----HSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC----HHHHHHHcCCCCCE
Confidence 3455666665433 23567889999999999999998764321110000 00000 0000110000000
Q ss_pred -------CCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh
Q 000568 276 -------TIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM 342 (1416)
Q Consensus 276 -------~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~ 342 (1416)
....-.++++. .+.+.+ .+++=++|+|+++..+....+.+...+..-..++.+|++|.+. .+....
T Consensus 77 ~~i~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 77 HVIKPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred EEEecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 00111233332 222222 2445689999998877778888888887666677776666653 444332
Q ss_pred -CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 343 -GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 343 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
..-..+.+.+++.+++.+.+..... + .+..+++.++|.|+.+..+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~~~---~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQGI---T---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHcCC---c---------hHHHHHHHcCCCHHHHHHH
Confidence 2335789999999999998876421 0 1245789999999977654
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=76.22 Aligned_cols=52 Identities=27% Similarity=0.438 Sum_probs=39.1
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+.+++|.+..+++|.+++......+....+++.++|++|+|||++|+.+++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999988764321112223458999999999999999999984
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0065 Score=72.20 Aligned_cols=167 Identities=14% Similarity=0.179 Sum_probs=88.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHccccccc---ccCcEEEEEecCCc
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD---HFDLKAWTCVSNDF 259 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~ 259 (1416)
.++.|.+..++++.+.+...-.. +-...+-+.++|++|+|||++|+++++...... ......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 45788999999988876421100 112345688999999999999999998532211 1123344444331
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hccccEEEEeccccccC-------hhhH-----hhhcccccc--CC
Q 000568 260 DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ-LSRKKFLLVLDDVWNEN-------YNDW-----VDMSRPLEA--GA 324 (1416)
Q Consensus 260 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~~-----~~~~~~l~~--~~ 324 (1416)
.+ +....+.. ......+....++. -.+++.+|+||+++..- ..+. ..+...+.. ..
T Consensus 261 ---eL----l~kyvGet--e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGET--ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccchH--HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 11000000 00011111222221 13468999999996420 0111 122222221 11
Q ss_pred CCcEEEEEccchHHHH-hh----CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 325 PGSKIIVTTRNQEVVA-IM----GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 325 ~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
.+..||.||...+... .+ .....++++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3445566665543321 11 223468999999999999999886
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0018 Score=71.31 Aligned_cols=104 Identities=24% Similarity=0.241 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
..+.++|.+|+|||.||.++++.... .-..+++++ ..+++..+........ ..+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~--~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE--KGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 45889999999999999999985422 223455664 3344455544433211 111222 223334334
Q ss_pred EEEEeccccccChhhHhh--hcccccc-CCCCcEEEEEccch
Q 000568 298 FLLVLDDVWNENYNDWVD--MSRPLEA-GAPGSKIIVTTRNQ 336 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~iivTtR~~ 336 (1416)
||||||+......+|.. +...+.. -..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995543345543 2222221 12456799999754
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.006 Score=78.78 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=37.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999985532 245569999999999999999874
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0086 Score=60.46 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=77.7
Q ss_pred eehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc------------------ccCcEEEEEe
Q 000568 194 GRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD------------------HFDLKAWTCV 255 (1416)
Q Consensus 194 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~ 255 (1416)
|.+...+.+.+.+..+. -...+.++|+.|+||+++|..+++..-... ......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55667777777775432 245688999999999999999887432111 1222333332
Q ss_pred cCC---cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEE
Q 000568 256 SND---FDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVT 332 (1416)
Q Consensus 256 ~~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivT 332 (1416)
... ..++++ +++...+.... ..+++=++|+||++....+.+..++..+.....++++|++
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 222221 13333222111 1245668999999988888889999888877778898888
Q ss_pred ccchH-HHHhh-CCCCeeeCCCC
Q 000568 333 TRNQE-VVAIM-GTAPAYQLKRL 353 (1416)
Q Consensus 333 tR~~~-v~~~~-~~~~~~~l~~L 353 (1416)
|++.. +.... .-...+.+.++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE---
T ss_pred ECChHHChHHHHhhceEEecCCC
Confidence 88753 32222 22234555544
|
... |
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.025 Score=63.49 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccC---c-----EEEEEecCCcCHHHHHHHHH
Q 000568 198 EKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD---L-----KAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 198 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~-----~~wv~~~~~~~~~~~~~~il 269 (1416)
.-+.+...+..+. -...+.+.|+.|+||+++|+.++...-...... | .-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 3455666664332 245777999999999999999987432211110 0 000001111111000
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM- 342 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~- 342 (1416)
.......-.++++.+ +.+.+ .+++=++|+|+++..+....+.++..+..-..++.+|++|.+. .+....
T Consensus 80 ---~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 ---EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ---ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 000001112333322 22222 3556688899998877777888888887666677777777654 333332
Q ss_pred CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 343 GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 343 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
..-..+.+.++++++..+.+...... . ...+...+..++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~-----~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSA-----E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhcc-----C----hHHHHHHHHHcCCCHHHH
Confidence 22357999999999999888876411 1 112456788999999644
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0075 Score=76.56 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=88.8
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
+.+.+|.++.+++|.+++............++.++|++|+||||+|+.++... ...| +-+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l--~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT--GRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh--CCCE---EEEEcCCCCCHHHhccch
Confidence 45689999999999998863221122345689999999999999999998732 2222 223333333332221100
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhh----Hhhhcccccc---------------CCCCcEE
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYND----WVDMSRPLEA---------------GAPGSKI 329 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~~~~~l~~---------------~~~gs~i 329 (1416)
+. ........+...+.+. ....-+|+||.++...... ...+...+.+ .-.+.-+
T Consensus 396 -~~-----~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RT-----YIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hc-----cCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00 0111112233333332 2234478899996543211 1233322221 1133444
Q ss_pred EEEccchHHHHhh-CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 330 IVTTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 330 ivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
|.|+....+...+ .-..++++.+++.+|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5566543332222 223568888999888877776664
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.026 Score=66.96 Aligned_cols=208 Identities=15% Similarity=0.105 Sum_probs=127.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc---cccccC--cEEEEEecCCcCHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR---VQDHFD--LKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f~--~~~wv~~~~~~~~~~~ 264 (1416)
..+-+|+.|..+|...+..--. .++..+.+.|.|.+|.|||..+..|.+... .++.-. ..+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 3466899999999888864332 123456999999999999999999998532 112222 2445555555678899
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-----cccEEEEeccccccChhhHhhhccccc-cCCCCcEEEEEccch--
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQLS-----RKKFLLVLDDVWNENYNDWVDMSRPLE-AGAPGSKIIVTTRNQ-- 336 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~~~~~l~-~~~~gs~iivTtR~~-- 336 (1416)
...|..++.+... ......+.+..++. .+..++++|+++.--....+.+...|. +..++||++|.+=..
T Consensus 475 Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 9999999987643 33444555666654 346888999884320011122333333 355788876644321
Q ss_pred H---------HHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 000568 337 E---------VVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLL 403 (1416)
Q Consensus 337 ~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 403 (1416)
+ |...+ +...+...+.+.++-.++...+..+.. .-.+...+-+|++|+.-.|-.-.|+.+.-++.
T Consensus 552 dlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1 11111 124577788888888888777764432 22334455566677766666666666555543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00013 Score=66.99 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=81.5
Q ss_pred CccEEEEecCCchh--hhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCCCCCcceEE
Q 000568 1132 SLKFLDVWECPKLE--SIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLE 1209 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~ 1209 (1416)
.+..++|++|.+.. ..+..+.....|...+|++|.+....+..-..++-+++|+++ ++.+..+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHHHhhhHHhhhcc
Confidence 46778888888763 334556777788888999998766554444566788888887 567778888877788899999
Q ss_pred EccccCCCcCcccccCcCccceeeeecCCCCCCC
Q 000568 1210 ISECERLEALPRGLRNLTCLQHLTIGDVLSPERD 1243 (1416)
Q Consensus 1210 l~~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~ 1243 (1416)
++.|++. ..|..+..+.+|..|+..+|.+..+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccccCc
Confidence 9888876 44566666888888888888655553
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0062 Score=64.68 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=74.4
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE----ecCCc-----C
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC----VSNDF-----D 260 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~~~-----~ 260 (1416)
..+.+|......+..++... .++.+.|++|.|||+||.++..+.-..+.|+.++... +++.. +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 34677888888888888442 4899999999999999998887432234454333321 11100 1
Q ss_pred HHHH----HHHHHHHhcCCCCCCCCHHHHHH--------HHHHHhccccE---EEEeccccccChhhHhhhccccccCCC
Q 000568 261 VIRL----TKTILRCITKQTIDDSDLNLLQE--------ELNKQLSRKKF---LLVLDDVWNENYNDWVDMSRPLEAGAP 325 (1416)
Q Consensus 261 ~~~~----~~~il~~l~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~~~~~~l~~~~~ 325 (1416)
..+- ++-+...+..- ......+.... .=-.+++++.+ +||+|.+...+..+...+... .+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~-~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRR-LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH-hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCC
Confidence 1111 11111111100 00001111100 00134556644 999999987765555555443 457
Q ss_pred CcEEEEEccchH
Q 000568 326 GSKIIVTTRNQE 337 (1416)
Q Consensus 326 gs~iivTtR~~~ 337 (1416)
+|++|+|--..+
T Consensus 203 ~sk~v~~GD~~Q 214 (262)
T PRK10536 203 NVTVIVNGDITQ 214 (262)
T ss_pred CCEEEEeCChhh
Confidence 899999866543
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.004 Score=62.86 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=36.8
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++||-++.++++.-.-.+ +..+-+.|.||+|+||||-+..+++.
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHH
Confidence 4689999999988776643 35678899999999999988877763
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00059 Score=69.29 Aligned_cols=34 Identities=38% Similarity=0.639 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccc-cccCcEEE
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQ-DHFDLKAW 252 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 252 (1416)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999865444 45777776
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0092 Score=73.64 Aligned_cols=177 Identities=14% Similarity=0.232 Sum_probs=95.5
Q ss_pred CeeeeehhHHHHHHHHH---hcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 190 AKVYGRETEKKEIVELL---LRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
.+++|.++.++++.+.+ ..... -+....+-+.++|++|+|||++|+.++... . +-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 46888877666655543 22110 011234568999999999999999998742 1 122333211 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC----------hhhH----hhhcccccc--CCCCc
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN----------YNDW----VDMSRPLEA--GAPGS 327 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~----~~~~~~l~~--~~~gs 327 (1416)
+... .. ......+...+.+.....+.+|++||++.-. ...+ ..+...+.. ...+-
T Consensus 252 f~~~----~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEM----FV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHH----hh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 1100 00 0111223334455556678999999995421 1112 222222211 23455
Q ss_pred EEEEEccchHHHH-hh----CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCC
Q 000568 328 KIIVTTRNQEVVA-IM----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNG 391 (1416)
Q Consensus 328 ~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 391 (1416)
.||.||...+... .+ .....+.++..+.++-.++++.++.... ... ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LSP----DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cch----hHHHHHHHhcCCC
Confidence 6777776644322 11 1235688888899988889988774311 111 2234568888877
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.025 Score=62.55 Aligned_cols=41 Identities=24% Similarity=0.207 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHH
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 264 (1416)
-|.+.|++|+|||++|+.+++. ... ..+++++....+..++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHH
Confidence 4568999999999999999862 221 2345555555444443
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.016 Score=63.22 Aligned_cols=188 Identities=16% Similarity=0.193 Sum_probs=104.1
Q ss_pred eeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
++=|-++.+++|.+...-+-.. +-..++-|.+||++|.|||-||++|++. ....| +.+... +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS----E 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS----E 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----H
Confidence 4557788888888776432110 2234677889999999999999999983 44333 433331 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-cccEEEEecccccc-----------Chh---hHhhhccccccC--CCC
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLS-RKKFLLVLDDVWNE-----------NYN---DWVDMSRPLEAG--APG 326 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~-----------~~~---~~~~~~~~l~~~--~~g 326 (1416)
+ .+...++ ...+++.+-+.-+ .....|.+|.++.. +.+ ..-+++..+..+ ...
T Consensus 221 l----VqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 L----VQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred H----HHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 2 2222111 1223333333333 45789999988541 111 111222223222 235
Q ss_pred cEEEEEccchHHHHh--hC---CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh----HHHH
Q 000568 327 SKIIVTTRNQEVVAI--MG---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP----LAAK 397 (1416)
Q Consensus 327 s~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP----Lai~ 397 (1416)
-|||..|-..++..- +. -.+.++++.-+.+.-.++|.-++-.- .....-+++. +++.|.|.- -|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd~e~----la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVDLEL----LARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcCHHH----HHHhcCCCchHHHHHHH
Confidence 688888776555422 22 23568888555666677888776332 2223334555 777777765 4555
Q ss_pred HHHHHhc
Q 000568 398 TLGGLLR 404 (1416)
Q Consensus 398 ~~~~~l~ 404 (1416)
+=|++++
T Consensus 366 tEAGm~A 372 (406)
T COG1222 366 TEAGMFA 372 (406)
T ss_pred HHHhHHH
Confidence 6666653
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.016 Score=70.72 Aligned_cols=184 Identities=12% Similarity=0.172 Sum_probs=94.9
Q ss_pred CeeeeehhHHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 190 AKVYGRETEKKEIVELLL---RDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
.+++|.+..++++.+++. .... .+....+-+.++|++|+|||++|+.++... ... ++.++.. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~----~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS----D 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH----H
Confidence 467888877766655443 1100 012234558899999999999999998743 212 2222211 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC----------hhhHhh----hccccc--cCCCCc
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN----------YNDWVD----MSRPLE--AGAPGS 327 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----~~~~l~--~~~~gs 327 (1416)
+.. ... ......+...+.......+.+|++|+++.-. ...+.. +...+. ....+-
T Consensus 124 ~~~----~~~-----g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVE----MFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHH----HHh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 111 110 0112233334444444567899999995421 011111 111111 122344
Q ss_pred EEEEEccchHHH-Hhh----CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCC-hHHHHH
Q 000568 328 KIIVTTRNQEVV-AIM----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGL-PLAAKT 398 (1416)
Q Consensus 328 ~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~ 398 (1416)
.||.||...+.. ..+ .....+.++..+.++-.++|..+...... ..... ...+++.+.|. +-.|..
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFSGADLAN 266 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCCHHHHHH
Confidence 566667654321 111 22356888988888888888877633211 11122 33588888774 333433
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0044 Score=75.98 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=83.7
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 265 (1416)
...++|.+..++.+.+.+...... ......+....|+.|||||.||++++... -+.=+..+-++.|+-.. -
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L--fg~e~aliR~DMSEy~E----k 563 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL--FGDEQALIRIDMSEYME----K 563 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh--cCCCccceeechHHHHH----H
Confidence 356899999999999988754331 23346678889999999999999998732 11003344444444211 1
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhccccE-EEEeccccccChhhHhhhccccccCC-----------CCcEEEEEc
Q 000568 266 KTILRCITKQTIDDSDLNLLQEELNKQLSRKKF-LLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTT 333 (1416)
Q Consensus 266 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTt 333 (1416)
..+.+-++.+.. --.-++ .-.+.+..+.++| +|.||.|...+.+-++.+...|.++. +.+-||.||
T Consensus 564 HsVSrLIGaPPG-YVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTS 641 (786)
T COG0542 564 HSVSRLIGAPPG-YVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTS 641 (786)
T ss_pred HHHHHHhCCCCC-Cceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEec
Confidence 122223333221 111111 2235555667777 88899998888777777777665532 334556666
Q ss_pred cc
Q 000568 334 RN 335 (1416)
Q Consensus 334 R~ 335 (1416)
--
T Consensus 642 N~ 643 (786)
T COG0542 642 NA 643 (786)
T ss_pred cc
Confidence 53
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=70.41 Aligned_cols=164 Identities=18% Similarity=0.264 Sum_probs=94.0
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
+.+-+|.++-+++|+++|.-......-+.+++.+||++|+|||+|++.++.. ....| +-++++.-.|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf---vR~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF---VRISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE---EEEecCccccHHHh----
Confidence 4567899999999999986433223345689999999999999999999984 33333 33444444443322
Q ss_pred HHHhcCC--CCCCCCHHHHHHHHHHHhccccEEEEeccccccChh----hHhhhccccccCC-------------CCcEE
Q 000568 269 LRCITKQ--TIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYN----DWVDMSRPLEAGA-------------PGSKI 329 (1416)
Q Consensus 269 l~~l~~~--~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~l~~~~-------------~gs~i 329 (1416)
.+. ..-..-...+++.+++. +.+.=+++||.++....+ --.+++..|.+.. -=|.|
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 111 11112223344444443 456779999999653211 1112222221100 11444
Q ss_pred E-EEccch-H-HH-HhhCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 330 I-VTTRNQ-E-VV-AIMGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 330 i-vTtR~~-~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
+ |||-+. + +. ..+....++++.+.+++|-.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 444432 2 21 222345789999999999887776665
|
|
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=68.08 Aligned_cols=119 Identities=21% Similarity=0.246 Sum_probs=75.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccE
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKF 298 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 298 (1416)
++.|.|+-++||||+++.+.... .+. .+++...+...-..-+.+... .+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~~~-----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDLLR-----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHHHH-----------------HHHHhhccCCc
Confidence 99999999999999997776532 111 455544332211111111111 11111122778
Q ss_pred EEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHH-----Hhh-CCCCeeeCCCCChhhHHHHH
Q 000568 299 LLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV-----AIM-GTAPAYQLKRLSTDDCLSVF 362 (1416)
Q Consensus 299 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf 362 (1416)
.|+||.|... .+|......+.+.+.. +|++|+-+..+. ... |....+++.||+-.|...+-
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 9999999766 7899988888776655 888888875432 222 23457899999999886654
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.051 Score=62.00 Aligned_cols=149 Identities=18% Similarity=0.255 Sum_probs=87.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
....-+.+.|++|+|||+||.+++. ...|..+--++...-.... +......+...+...-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCcc---------------HHHHHHHHHHHHHHhhc
Confidence 3466778899999999999999986 3456544433221111110 11112233344455556
Q ss_pred cccEEEEeccccccChhhHhhhc---------------cccccCCCCcEEEEEccchHHHHhhCC----CCeeeCCCCCh
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMS---------------RPLEAGAPGSKIIVTTRNQEVVAIMGT----APAYQLKRLST 355 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~---------------~~l~~~~~gs~iivTtR~~~v~~~~~~----~~~~~l~~L~~ 355 (1416)
..--.||+||+..- -+|-.+. ...|+.+..--|+-||....|...++- ...+.++.++.
T Consensus 597 S~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 67789999999442 3333222 122222222234557777888887753 35789999988
Q ss_pred -hhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhc
Q 000568 356 -DDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKC 389 (1416)
Q Consensus 356 -~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~ 389 (1416)
++..+.++..- .-.+.+.+.++++...+|
T Consensus 675 ~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 67777776543 122344566666777766
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0044 Score=63.31 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=41.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccc-cccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQ-DHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
.|.|+|++|+||||||+++....... -+.|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 47899999999999999998643221 13455555221 112233455555666666666
Q ss_pred EEEEeccccc
Q 000568 298 FLLVLDDVWN 307 (1416)
Q Consensus 298 ~LlVlDdv~~ 307 (1416)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 67788743
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0029 Score=66.89 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV 255 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 255 (1416)
-.++|+|..|+||||++..+... ....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 36779999999999999999874 5667877766644
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0035 Score=68.52 Aligned_cols=101 Identities=19% Similarity=0.123 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
.-+.++|++|+|||.||..+.+.. ......+.|+++ .++...+..... ....+.....+ .+-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----hcC
Confidence 458999999999999999998742 222233555543 344444433211 11222222222 123
Q ss_pred EEEEeccccccChhhHh--hhccccccCCCCcEEEEEccch
Q 000568 298 FLLVLDDVWNENYNDWV--DMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~--~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
=||||||+......+|. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999654333332 2222222211123688888864
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0019 Score=72.19 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=42.7
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
+++|.++.++++++++.......+..-+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999976543223456899999999999999999998754
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.078 Score=60.37 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc---CcE-----EEEEecCCcCHHHHHHHH
Q 000568 197 TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF---DLK-----AWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 197 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~-----~wv~~~~~~~~~~~~~~i 268 (1416)
..-+++...+..+ .-...+.+.|+.|+||+++|..++...-....- .|. .++..+..+|+..+
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 9 PDYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 3455666666433 235678899999999999999887643221110 000 00111111111100
Q ss_pred HHHhcCCCC-CCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHHHh
Q 000568 269 LRCITKQTI-DDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAI 341 (1416)
Q Consensus 269 l~~l~~~~~-~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~ 341 (1416)
..... ..-.++++.+ +.+.+ .+++=++|+|+++.-+....+.++..+..-..++.+|.+|.+ ..+...
T Consensus 80 ----~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred ----ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 00000 0122333332 22222 356679999999887767777888888665567777666665 334433
Q ss_pred h-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 342 M-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 342 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
. .-...+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|..+.
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 2 223568999999999988886542 1 11 1235678999999996544
|
|
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.03 Score=63.69 Aligned_cols=199 Identities=14% Similarity=0.131 Sum_probs=120.6
Q ss_pred ehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHHcccccccccCcEEEEEecCC---cCHHHHHHHHHH
Q 000568 195 RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLA-QLVYNDHRVQDHFDLKAWTCVSND---FDVIRLTKTILR 270 (1416)
Q Consensus 195 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~ 270 (1416)
|.+..++|..||.+.. -..|.|.|+-|+||+.|+ .++..+.+. +..+++.+- .+-...++.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999997654 379999999999999999 777765322 555554332 223344555555
Q ss_pred HhcC-----------------------CCCC-CCCH-HHHHHH-------HHH-------------------Hhc---cc
Q 000568 271 CITK-----------------------QTID-DSDL-NLLQEE-------LNK-------------------QLS---RK 296 (1416)
Q Consensus 271 ~l~~-----------------------~~~~-~~~~-~~~~~~-------l~~-------------------~l~---~k 296 (1416)
++|- +... ..+. .++... +++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 4442 1110 1111 122211 111 010 12
Q ss_pred cEEEEeccccccC---------hhhHhhhccccccCCCCcEEEEEccchHHHHhhC------CCCeeeCCCCChhhHHHH
Q 000568 297 KFLLVLDDVWNEN---------YNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMG------TAPAYQLKRLSTDDCLSV 361 (1416)
Q Consensus 297 r~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~------~~~~~~l~~L~~~~~~~l 361 (1416)
|=+||+|+.-... ..+|..... ..+-.+||++|-+......+. ..+.+.|...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999985431 134544322 224568999998754443332 235789999999999999
Q ss_pred HHHhhcCCCCC------------CC----ChhHHHHHHHHHHhcCCChHHHHHHHHHhccCCCc
Q 000568 362 FTQHSLDSRDF------------SS----NKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGP 409 (1416)
Q Consensus 362 f~~~~~~~~~~------------~~----~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~ 409 (1416)
...+....... .. ......-....++.+||==.-+..+++.++...++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 99887433110 00 01233445568899999999999999999876553
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0023 Score=68.96 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=55.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.++|.+|+|||+||.++++... .....++++++. +++..+-..... ....... + +.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~---l-~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF---L-QEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH---H-HHh-cC
Confidence 35789999999999999999998543 233345666553 333433333211 1111222 2 222 34
Q ss_pred cEEEEeccccccChhhHhh--hccccccC-CCCcEEEEEccc
Q 000568 297 KFLLVLDDVWNENYNDWVD--MSRPLEAG-APGSKIIVTTRN 335 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~ 335 (1416)
-=||||||+.......|.. +...+... ...--+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999995543344542 22222221 123346777764
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0064 Score=68.14 Aligned_cols=123 Identities=14% Similarity=0.187 Sum_probs=69.6
Q ss_pred eehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 194 GRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 194 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
+|....+...+++..-. .+...+-+.++|..|+|||.||.++++... +.. ..+.++++. .++.++...+.
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g-~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKG-VSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcC-CCEEEEEHH------HHHHHHHHHHh
Confidence 45444555555554322 112346789999999999999999998542 222 235555543 34444444432
Q ss_pred CCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhh--hcccc-ccC-CCCcEEEEEccch
Q 000568 274 KQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVD--MSRPL-EAG-APGSKIIVTTRNQ 336 (1416)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--~~~~l-~~~-~~gs~iivTtR~~ 336 (1416)
. .+..+. +.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||-..
T Consensus 205 ~-----~~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 205 D-----GSVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred c-----CcHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 1 122222 222 2 234589999997766667754 44433 211 2355788888753
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0077 Score=77.04 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=70.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..++|.+..++.+.+.+..... .......++.++|+.|+|||++|+.++... +...+.++.++-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 5689999999999888864321 011234578899999999999999998743 2234555554422211
Q ss_pred HHHHHhcCCC-C-CCCCHHHHHHHHHHHhccc-cEEEEeccccccChhhHhhhcccccc
Q 000568 267 TILRCITKQT-I-DDSDLNLLQEELNKQLSRK-KFLLVLDDVWNENYNDWVDMSRPLEA 322 (1416)
Q Consensus 267 ~il~~l~~~~-~-~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~~~~~l~~ 322 (1416)
.+...++... . ....... +.+.++.+ .-+++||+++..+.+.++.+...+..
T Consensus 525 ~~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred cHHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111122211 1 1111222 23333333 45999999988777777776665543
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.011 Score=76.99 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=78.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..++|.+..++.+.+.+...... ......++.++|+.|+|||++|+.+.... ...-...+.++.+.-.....+ .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~~-~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHSV-A 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccchH-H
Confidence 46899999999999988753210 11234678899999999999999998742 111123344444432221111 1
Q ss_pred HHHHHhcCCCC--CCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEc
Q 000568 267 TILRCITKQTI--DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTT 333 (1416)
Q Consensus 267 ~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTt 333 (1416)
.-++.... .......+...++. ...-+|+||++...+...+..+...+..+. ..+-||+||
T Consensus 642 ---~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 642 ---RLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred ---HhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 11221110 11111222222222 233489999998887777777776664331 334477777
Q ss_pred cc
Q 000568 334 RN 335 (1416)
Q Consensus 334 R~ 335 (1416)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 75
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0026 Score=65.18 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-+.++|.+|+|||.||..+.+.... .. ..+.|+.+ .+++..+ .... .....+.... .+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g-~~v~f~~~------~~L~~~l----~~~~-~~~~~~~~~~----~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KG-YSVLFITA------SDLLDEL----KQSR-SDGSYEELLK----RLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEH------HHHHHHH----HCCH-CCTTHCHHHH----HHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CC-cceeEeec------Cceeccc----cccc-cccchhhhcC----ccc-c
Confidence 356899999999999999999874322 22 23566643 3333333 2221 1122222222 222 2
Q ss_pred cEEEEeccccccChhhHhh--hccccccC-CCCcEEEEEccch
Q 000568 297 KFLLVLDDVWNENYNDWVD--MSRPLEAG-APGSKIIVTTRNQ 336 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~~ 336 (1416)
-=||||||+-.....+|.. +...+... ..+ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3478899997655445543 21111111 123 688888864
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.043 Score=62.16 Aligned_cols=94 Identities=14% Similarity=0.237 Sum_probs=64.5
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCC
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDF 372 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 372 (1416)
+++=++|+|+++..+...++.++..+..-..++.+|++|.+ ..+.... .-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 45568899999888878888888888766667766655554 4444332 223679999999999999887752 1
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000568 373 SSNKSLEEIGKKIVIKCNGLPLAAKTLG 400 (1416)
Q Consensus 373 ~~~~~~~~~~~~i~~~~~glPLai~~~~ 400 (1416)
++ ...++..++|.|+.+..+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1225778899997655443
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0067 Score=78.01 Aligned_cols=138 Identities=16% Similarity=0.155 Sum_probs=77.4
Q ss_pred CCeeeeehhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 265 (1416)
...++|.+..++.+.+.+..... .......++.++|+.|+|||.+|+.++... -+.....+-++++.-.+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l--~~~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL--YGGEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH--hCCCcceEEEeHHHhhhh----
Confidence 35789999999999998864311 122345688999999999999999887642 111122233333321111
Q ss_pred HHHHHHhcCCCC--CCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEE
Q 000568 266 KTILRCITKQTI--DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVT 332 (1416)
Q Consensus 266 ~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivT 332 (1416)
..+.+-++.... .......+...+++ ...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111111222111 11111223333332 445699999998777666766665554432 45566777
Q ss_pred ccc
Q 000568 333 TRN 335 (1416)
Q Consensus 333 tR~ 335 (1416)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 664
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0069 Score=70.43 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=36.5
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 4889999999999888665 35789999999999999999874
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0089 Score=61.85 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=64.6
Q ss_pred eehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC--CcCH-------H--
Q 000568 194 GRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN--DFDV-------I-- 262 (1416)
Q Consensus 194 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~-------~-- 262 (1416)
.+..+....++.|.. ..++.+.|++|.|||.||.+...+.-..+.|+.++++.-.- ..+. .
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 355666677777763 35899999999999999988877654557888877764211 1110 0
Q ss_pred -----HHHHHHHHHhcCCCCCCCCHHHHHHHH------HHHhccc---cEEEEeccccccChhhHhhhccccccCCCCcE
Q 000568 263 -----RLTKTILRCITKQTIDDSDLNLLQEEL------NKQLSRK---KFLLVLDDVWNENYNDWVDMSRPLEAGAPGSK 328 (1416)
Q Consensus 263 -----~~~~~il~~l~~~~~~~~~~~~~~~~l------~~~l~~k---r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 328 (1416)
.-+.+.+..+. .....+.+...= -.+++|+ .-.||+|++.+.+..++..+... .+.|||
T Consensus 76 ~~p~~~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~sk 148 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSK 148 (205)
T ss_dssp --TTTHHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-E
T ss_pred HHHHHHHHHHHHHHHh----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcE
Confidence 01111111111 111222222100 0223444 46999999988777777776554 357899
Q ss_pred EEEEccchH
Q 000568 329 IIVTTRNQE 337 (1416)
Q Consensus 329 iivTtR~~~ 337 (1416)
||++=-..+
T Consensus 149 ii~~GD~~Q 157 (205)
T PF02562_consen 149 IIITGDPSQ 157 (205)
T ss_dssp EEEEE----
T ss_pred EEEecCcee
Confidence 999866543
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0035 Score=65.31 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTI---DDSDLNLLQEELNKQ 292 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~ 292 (1416)
++|+.++|+.|+||||.+.+++.....+ -..+..++... .....+.++..++.++.+.. ...+..++.....+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3799999999999999988888754333 33466666543 34566777888888876532 222333333322233
Q ss_pred hcccc-EEEEeccc
Q 000568 293 LSRKK-FLLVLDDV 305 (1416)
Q Consensus 293 l~~kr-~LlVlDdv 305 (1416)
++.++ =+|++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 33333 47777765
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.062 Score=55.24 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=64.9
Q ss_pred ccCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 187 VNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
++-..++|-|..++.+++-...-- .+...--|.+||.-|+||++|++++.+.. .+..-. -|.|.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~--~~~glr--LVEV~k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNEY--ADEGLR--LVEVDKE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHHH--HhcCCe--EEEEcHH--------
Confidence 344578999999998887543211 11234567899999999999999999843 222211 2333221
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhcccccc
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEA 322 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~ 322 (1416)
+..+...+.+.++. ..+||.|..||..-+ ....++.++..+..
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 11112222333332 367999999999433 33556666666654
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.014 Score=75.52 Aligned_cols=137 Identities=17% Similarity=0.185 Sum_probs=75.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..++|.+..++.+...+..... .......++.++|+.|+|||++|+.++.... ..-...+.++++.-.. ...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~-~~~-- 642 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFME-KHS-- 642 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhh-hhh--
Confidence 4689999999999988864321 0122235788999999999999999986321 1112234444443211 111
Q ss_pred HHHHHhcCCCC-CCCCHHHHHHHHHHHhcc-ccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEc
Q 000568 267 TILRCITKQTI-DDSDLNLLQEELNKQLSR-KKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTT 333 (1416)
Q Consensus 267 ~il~~l~~~~~-~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTt 333 (1416)
+.+-++.... ...+.. ..+.+.++. ..-+|+||++...+...+..+...+..+. ..+-||+||
T Consensus 643 -~~~LiG~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 643 -VSRLVGAPPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred -HHHHhCCCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 1111222111 111111 112233322 23599999998777677777666554321 223367777
Q ss_pred cc
Q 000568 334 RN 335 (1416)
Q Consensus 334 R~ 335 (1416)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 75
|
|
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.016 Score=65.24 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCc-EEEEEecCC-cCHHHHHHHHHHHhcCCC
Q 000568 199 KKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDL-KAWTCVSND-FDVIRLTKTILRCITKQT 276 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~il~~l~~~~ 276 (1416)
..++++.+..-. ..+.+.|+|.+|+|||||++.+++.... .+-+. ++|+.+.+. ..+.++.+.+...+....
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 445777765432 2356689999999999999998874321 12233 467666664 467788888887776544
Q ss_pred CCCCCHH-----HHHHHHHHHh--ccccEEEEeccc
Q 000568 277 IDDSDLN-----LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 277 ~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
.+..... .....+.+++ ++++++||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 3222211 1122222333 488999999999
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0094 Score=65.38 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
..+.|+|++|+|||+||..+......+ .+ .+.+++ ..++...+...... .. +...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~-G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA-GI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc-CC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 467799999999999999997642211 11 233443 22333333222111 11 112232222 344
Q ss_pred EEEEeccccccChhhHh--hhcccccc-CCCCcEEEEEccch
Q 000568 298 FLLVLDDVWNENYNDWV--DMSRPLEA-GAPGSKIIVTTRNQ 336 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~--~~~~~l~~-~~~gs~iivTtR~~ 336 (1416)
-++|+||+.......+. .+...+.. ...+ .+||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCCC
Confidence 59999999754333332 22222211 1234 488888764
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=63.24 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=56.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
...+.++|.+|+|||+||.++++.... .-..++++++ .++...+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 357889999999999999999985322 2234555533 3444443333211 1112222 223344 3
Q ss_pred cEEEEeccccccChhhHhh--hcccccc-CCCCcEEEEEccc
Q 000568 297 KFLLVLDDVWNENYNDWVD--MSRPLEA-GAPGSKIIVTTRN 335 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~iivTtR~ 335 (1416)
.=+||+||+......+|.. +...+.. -...-.+||||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3488889997665556654 2222211 1123457777764
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=64.75 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=27.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV 255 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 255 (1416)
...+.++|..|+|||.||.++++... +..-..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEH
Confidence 46789999999999999999998532 211234566654
|
|
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.11 Score=60.27 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccc
Q 000568 196 ETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV 243 (1416)
Q Consensus 196 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 243 (1416)
+.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+....+.
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445567777776542 246789999999999999999999875433
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0053 Score=66.81 Aligned_cols=101 Identities=19% Similarity=0.130 Sum_probs=51.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-+.++|++|+|||+||..+...... ..+ .+.|+ +..++...+..... ... ....+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~-~g~-~v~f~------t~~~l~~~l~~~~~-----~~~---~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ-AGH-RVLFA------TAAQWVARLAAAHH-----AGR---LQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH-CCC-chhhh------hHHHHHHHHHHHHh-----cCc---HHHHHHHh--cc
Confidence 356899999999999999999874321 122 23332 23334444432211 111 12223322 23
Q ss_pred cEEEEeccccccChhhHh--hhcccccc-CCCCcEEEEEccch
Q 000568 297 KFLLVLDDVWNENYNDWV--DMSRPLEA-GAPGSKIIVTTRNQ 336 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~--~~~~~l~~-~~~gs~iivTtR~~ 336 (1416)
.-+||+||+.......|. .+...+.. ...+ .+|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 458999999654322222 12222211 1224 488888864
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.017 Score=74.79 Aligned_cols=136 Identities=14% Similarity=0.179 Sum_probs=76.9
Q ss_pred CeeeeehhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..++|.+..++.+.+.+..... .......++.++|+.|+|||+||+.+++..- +.-...+-++.++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~--~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF--GSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCccceEEEEchhccccccH--
Confidence 5689999999999888863221 0122245677899999999999999986321 11122334444432211111
Q ss_pred HHHHHhcCCC-C-CCCCHHHHHHHHHHHhcccc-EEEEeccccccChhhHhhhccccccC-----------CCCcEEEEE
Q 000568 267 TILRCITKQT-I-DDSDLNLLQEELNKQLSRKK-FLLVLDDVWNENYNDWVDMSRPLEAG-----------APGSKIIVT 332 (1416)
Q Consensus 267 ~il~~l~~~~-~-~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~iivT 332 (1416)
.+-++.+. . ....... +.+.++.++ -+++||+++..+.+.++.+...+..+ ...+-||+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11122111 1 1111122 334444444 58999999887777777776665543 134556777
Q ss_pred ccc
Q 000568 333 TRN 335 (1416)
Q Consensus 333 tR~ 335 (1416)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 765
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.025 Score=65.52 Aligned_cols=142 Identities=11% Similarity=0.138 Sum_probs=83.9
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc-------------------ccCcEE
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD-------------------HFDLKA 251 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 251 (1416)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+...... ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677778888888876432 1233589999999999999999987532111 112344
Q ss_pred EEEecCCcC---HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcE
Q 000568 252 WTCVSNDFD---VIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSK 328 (1416)
Q Consensus 252 wv~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 328 (1416)
.+..+.... ..+..+++.+....... .++.-++++|+++..+.+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444333 23333333333222110 35677999999987766666667666666666778
Q ss_pred EEEEccch-HHHHhh-CCCCeeeCCC
Q 000568 329 IIVTTRNQ-EVVAIM-GTAPAYQLKR 352 (1416)
Q Consensus 329 iivTtR~~-~v~~~~-~~~~~~~l~~ 352 (1416)
+|++|... .+.... .....+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88877743 222211 1123466666
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.014 Score=62.38 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=36.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..-+++.|+|++|+|||++|.+++... ...-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHH
Confidence 356899999999999999999988642 22346789998875 55544443
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.034 Score=58.24 Aligned_cols=25 Identities=48% Similarity=0.566 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999874
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.076 Score=67.05 Aligned_cols=154 Identities=11% Similarity=0.051 Sum_probs=94.4
Q ss_pred CCCCcHHHHHHHHHccccccccc-CcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEec
Q 000568 225 MGGLGKTTLAQLVYNDHRVQDHF-DLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLD 303 (1416)
Q Consensus 225 ~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 303 (1416)
|.++||||+|..++++.- .+.+ ..++-++++....+. ..+++++.+...... -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 678999999999998531 1222 235566777654444 333443332211000 01245799999
Q ss_pred cccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhh-CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHH
Q 000568 304 DVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEI 381 (1416)
Q Consensus 304 dv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 381 (1416)
+++.-+......+...+......+++|.++.+. .+.... .....+++.+++.++....+...+...+.. .+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~---~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LT---EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CC---HHH
Confidence 998887777888877776544566766655543 333222 223579999999999888877665322211 11 345
Q ss_pred HHHHHHhcCCChHHHHH
Q 000568 382 GKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 382 ~~~i~~~~~glPLai~~ 398 (1416)
...|++.++|.+-.+..
T Consensus 714 L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 714 LQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 67799999998854443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0064 Score=60.53 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=25.8
Q ss_pred CccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeec
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIW 1187 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~ 1187 (1416)
+...++|++|.+.... .|..++.|.+|.+++|.+..+-|.--..+++|+.|.+.
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 4445555555543221 24445555555555555554444333334445555554
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.027 Score=61.59 Aligned_cols=50 Identities=22% Similarity=0.156 Sum_probs=36.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccc----cCcEEEEEecCCcCHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH----FDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 264 (1416)
....++.|+|.+|+|||++|.+++........ -..++|++....++..++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 34689999999999999999999754222221 357899988877665444
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.017 Score=68.15 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=109.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
+++||.+.-...|...+.... -..-....|+-|+||||+|+.++...-.... ...+....=...+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhh
Confidence 357999999999999886542 2344567899999999999999875422211 0111111111112222
Q ss_pred HHhcCC-----CCCCCCHHHHHHHHHHHh----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHH
Q 000568 270 RCITKQ-----TIDDSDLNLLQEELNKQL----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVV 339 (1416)
Q Consensus 270 ~~l~~~-----~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 339 (1416)
..-..+ ......++++.+.+.+.. +++-=+.|+|.|.-.+...|+.++..+..--...+.|..|++ ..+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 210000 001112233222222211 244448899999877778899998888665556666665555 3333
Q ss_pred Hh-hCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH
Q 000568 340 AI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 340 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 394 (1416)
.. ......|.++.++.++-...+...+-.+....+ .+...-|++..+|..-
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 22 233467999999999888888877744433222 2334447777777544
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0098 Score=62.01 Aligned_cols=113 Identities=13% Similarity=-0.018 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTID--DSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~ 295 (1416)
.++.|+|..|.||||+|..++.. ...+-..+..+. ..++.+.....++.+++..... ....+++...+++ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999888773 322323333332 1112122233344555422111 2334555555555 233
Q ss_pred ccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchH
Q 000568 296 KKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQE 337 (1416)
Q Consensus 296 kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 337 (1416)
+.-+||+|.+.--+.++...+...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999543222222333322 235788999998853
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.099 Score=61.00 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=101.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
.++=|.++.+.++.+++...... +-...+-|.++|++|+|||.||++++.... +-++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-------vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-------VPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-------CceEeecch-----
Confidence 45778898888888877542210 123466788999999999999999998432 223444332
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC------hhhHh-----hhcc---cccc-CCCCcE
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN------YNDWV-----DMSR---PLEA-GAPGSK 328 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~~~~~-----~~~~---~l~~-~~~gs~ 328 (1416)
+|+..+. ..+.+.+.+.+.+.-..-.+++++|+++-.. +.+.+ ++.. -+.. ...|-.
T Consensus 258 ---eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 ---EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 2222222 2234445555556666779999999996421 11111 1111 1111 112333
Q ss_pred EEE---EccchHHHHhhC----CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCC----hHHHH
Q 000568 329 IIV---TTRNQEVVAIMG----TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGL----PLAAK 397 (1416)
Q Consensus 329 iiv---TtR~~~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl----PLai~ 397 (1416)
||| |+|-..+-..+. ..+.+.+.--++..-.++++..+-+-.- ..+-++.+ |++..-|. -.|+.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-~g~~d~~q----lA~lTPGfVGADL~AL~ 404 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-SGDFDFKQ----LAKLTPGFVGADLMALC 404 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-CCCcCHHH----HHhcCCCccchhHHHHH
Confidence 333 455433322222 2355777777777666677666533221 12233444 55555554 34555
Q ss_pred HHHHHh
Q 000568 398 TLGGLL 403 (1416)
Q Consensus 398 ~~~~~l 403 (1416)
..|+..
T Consensus 405 ~~Aa~v 410 (802)
T KOG0733|consen 405 REAAFV 410 (802)
T ss_pred HHHHHH
Confidence 445444
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0072 Score=68.26 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
.-+.++|..|+|||.||.++++....+ -..++++++.. ++..+...-... ..+.... + +.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~~------l~~~l~~~~~~~---~~~~~~~---~-~~l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTADE------LIEILREIRFNN---DKELEEV---Y-DLLIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHHH------HHHHHHHHHhcc---chhHHHH---H-HHhcc-C
Confidence 568999999999999999999853222 22456665432 333332211100 1111111 2 22221 2
Q ss_pred EEEEeccccccChhhHhh--hcccccc-CCCCcEEEEEccch
Q 000568 298 FLLVLDDVWNENYNDWVD--MSRPLEA-GAPGSKIIVTTRNQ 336 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~iivTtR~~ 336 (1416)
=||||||+.......|.. +...+.. ...+-.+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 489999996654344432 2222221 12345688888753
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.074 Score=55.06 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=86.1
Q ss_pred CeeeeehhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKE---IVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.++||.+..+.+ |++.|...+.=++..++-|..+|++|.|||.+|+++++...+ .| +.+-. .+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vka-------t~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVKA-------TE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEech-------HH
Confidence 568998876543 666775544324456889999999999999999999985322 22 22211 11
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh------------hhHhhhcccccc--CCCCcEEEEE
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY------------NDWVDMSRPLEA--GAPGSKIIVT 332 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------------~~~~~~~~~l~~--~~~gs~iivT 332 (1416)
-|-+..+ +....+.+...+.-+.-.+++.+|.++-... +-.++++.-+.. .+.|...|..
T Consensus 187 liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 187 LIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 1111111 0011111112222234578999998853210 111222222221 2346555666
Q ss_pred ccchHHHHhh---CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 333 TRNQEVVAIM---GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 333 tR~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
|...++.... .....++..--+++|-.+++...+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 6655543321 223457777778888888888877
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.00078 Score=62.15 Aligned_cols=65 Identities=28% Similarity=0.333 Sum_probs=55.1
Q ss_pred cccceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCC
Q 000568 605 RVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLR 671 (1416)
Q Consensus 605 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 671 (1416)
+.+..|+|++|.|..+|..+..++.|+.|+++.| .+...|.-|..|.+|-+|+..+|. +..+|.+
T Consensus 77 ~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 77 PTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred chhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 4667889999999999988999999999999985 667788888889999999988887 7777765
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.065 Score=68.97 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=94.1
Q ss_pred CeeeeehhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
.++.|.+..+++|.+.+.-.-. -+-...+-+.++|++|+|||++|+++++.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH----
Confidence 4578888888877776532100 011234558899999999999999999843 2222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC--------h----hhHhhhcccccc--CCCCcE
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN--------Y----NDWVDMSRPLEA--GAPGSK 328 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~----~~~~~~~~~l~~--~~~gs~ 328 (1416)
+++.... ......+...+...-.....+|++|+++.-. . .....+...+.. ...+.-
T Consensus 522 ----~l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111111 1112222233333334567899999985320 0 011122222221 123445
Q ss_pred EEEEccchHHHHh-h----CCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 329 IIVTTRNQEVVAI-M----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 329 iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
||.||...+.... + .....+.++..+.++-.++|..+.-+.. .....++. .+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~l~----~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVDLE----ELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCCHH----HHHHHcCCCC
Confidence 6667765543321 1 2345688888888888889876653221 11222333 4777787754
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.036 Score=66.15 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=90.0
Q ss_pred CeeeeehhHHHHHHHHHhc---CCC-CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLR---DDL-RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLT 265 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~---~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 265 (1416)
.++.|.+..++.+.+.... ... -+-...+-|.++|++|+|||.+|+.+++.. ...| +-++.+. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~------l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK------L- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH------h-
Confidence 3567877666655542211 000 011335678899999999999999998842 2122 1122211 1
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh-------h-hH----hhhccccccCCCCcEEEEEc
Q 000568 266 KTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-------N-DW----VDMSRPLEAGAPGSKIIVTT 333 (1416)
Q Consensus 266 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~-~~----~~~~~~l~~~~~gs~iivTt 333 (1416)
..... ......+...+...-...+.+|++|+++..-. . .- ..+...+.....+.-||.||
T Consensus 296 ---~~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 296 ---FGGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ---ccccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 10000 01111222222222235689999999964210 0 00 11111122223344456677
Q ss_pred cchHH-HHhh----CCCCeeeCCCCChhhHHHHHHHhhcCCCCC-CCChhHHHHHHHHHHhcCCCh
Q 000568 334 RNQEV-VAIM----GTAPAYQLKRLSTDDCLSVFTQHSLDSRDF-SSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 334 R~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~glP 393 (1416)
.+.+. ...+ .....+.++..+.++-.++|..+....... ....++ ..+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl----~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI----KKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH----HHHHhhcCCCC
Confidence 65432 1121 234568888889999899998776432211 112223 34677776654
|
|
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.019 Score=62.21 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=35.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 264 (1416)
....++.|+|.+|+|||++|.+++... ...-..++|++.. .++..++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 346899999999999999999998743 2234568899877 5554443
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.021 Score=65.43 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
...++.++|++|+||||+|.+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999863
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.024 Score=57.37 Aligned_cols=131 Identities=20% Similarity=0.141 Sum_probs=65.3
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc-cccccCcEEEEEecCCcCHHHHHHHHHH
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR-VQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~il~ 270 (1416)
+||....+.++.+.+..-.. .. .-|.|+|..|+||+.+|+.+++... .... .+-|+++.- +.+.+-.++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~p---fi~vnc~~~-~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNSPRKNGP---FISVNCAAL-PEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCSTTTTS----EEEEETTTS--HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhhhcccCC---eEEEehhhh-hcchhhhhhhc
Confidence 46888888888887765422 22 3455999999999999999998421 1222 234444432 23333333332
Q ss_pred HhcCCCCCC-CCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhcccccc------CC-----CCcEEEEEccch
Q 000568 271 CITKQTIDD-SDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEA------GA-----PGSKIIVTTRNQ 336 (1416)
Q Consensus 271 ~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~------~~-----~gs~iivTtR~~ 336 (1416)
.-.+..... ..... .+.. -..=-|+||+|++-.......+...+.. +. ...|||.||...
T Consensus 73 ~~~~~~~~~~~~~~G---~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 73 HEKGAFTGARSDKKG---LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp BCSSSSTTTSSEBEH---HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccccccCC---ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 211111111 10111 1121 2334788999977654444444443321 11 257888888854
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.021 Score=63.74 Aligned_cols=85 Identities=20% Similarity=0.113 Sum_probs=56.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ-----TIDDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~~~l 289 (1416)
+.-+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .++.++.. .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 456899999999999999999987642 2334567899887766643 33444332 11334556666666
Q ss_pred HHHhcc-ccEEEEecccc
Q 000568 290 NKQLSR-KKFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~~-kr~LlVlDdv~ 306 (1416)
...++. .--+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 555543 45689999983
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.00036 Score=71.82 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=57.5
Q ss_pred ccCccEEEeecCCCCccc----cccccCCCCcceEEEccCCCcc-----------ccCCCCCCCCccEEeEccCCCCCcC
Q 000568 965 SCKLEYLGLSYCQGLVTL----PQSLLNLSSLREIYIRSCSSLV-----------SFPEVALPSKLRLITIWDCEALKSL 1029 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~~----~~~l~~l~~L~~L~L~~n~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~ 1029 (1416)
+..++.++||+|.+.... ...+.+-.+|+..+++.-.... -.+....+|.|+..++++|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 367889999999886543 3455666778888776531111 1123456789999999999876665
Q ss_pred chhh--hcCCCCCcCeeEEccCC
Q 000568 1030 PEAW--MCETNSSLEILNIAGCS 1050 (1416)
Q Consensus 1030 ~~~~--~~~~~~~L~~L~l~~c~ 1050 (1416)
|... +.++.+.|+.|.+++|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC
Confidence 5432 22667789999998853
|
|
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.013 Score=60.62 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=27.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEE
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWT 253 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 253 (1416)
...+|.+.|+.|+||||+|+.++.. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999873 34445555555
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0084 Score=58.97 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=61.5
Q ss_pred eeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccc-ccccCcEEEEEecCCcCHHHHHHHHHHH
Q 000568 193 YGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV-QDHFDLKAWTCVSNDFDVIRLTKTILRC 271 (1416)
Q Consensus 193 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~ 271 (1416)
||+...++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|.. +.+.... .+++
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~~------~~~l-- 65 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASLP------AELL-- 65 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCTC------HHHH--
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhCc------HHHH--
Confidence 466667777776665421 12345789999999999999988874322 122211 0111100 1111
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccC-CCCcEEEEEccch
Q 000568 272 ITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAG-APGSKIIVTTRNQ 336 (1416)
Q Consensus 272 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~-~~gs~iivTtR~~ 336 (1416)
.+ .+.--++++|++.-+......+...+... ....|+|.||+..
T Consensus 66 ------------------~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 66 ------------------EQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ------------------HH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ------------------HH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 11 14456889999776656666666666532 5678999999864
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.00068 Score=83.94 Aligned_cols=106 Identities=21% Similarity=0.357 Sum_probs=49.9
Q ss_pred CccEEEEecCCchhh--hHHhhccCCcccEEeeccC-CCccccc----ccccCCCCcceeeeccCCCcccccCCC--CCC
Q 000568 1132 SLKFLDVWECPKLES--IAERLNNNTSLEVIDIGNC-ENLKILP----SGLHNLCQLQRISIWCCGNLVSFSEGG--LPC 1202 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~Ls~n-~~~~~~~----~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~ 1202 (1416)
.|+.|.+.+|..... +......+++|+.|++++| ......+ .....+.+|+.|+++++..++..--.. ..|
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 555555555544332 3344556666666666652 2111111 122334566666666555433211000 015
Q ss_pred CCcceEEEccccC-CCc-CcccccCcCccceeeeecC
Q 000568 1203 AKLTRLEISECER-LEA-LPRGLRNLTCLQHLTIGDV 1237 (1416)
Q Consensus 1203 ~~L~~L~l~~n~~-~~~-~p~~l~~l~~L~~L~ls~n 1237 (1416)
++|++|.+.+|.. +.. +-.....++.|++|++++|
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 5666666666652 221 1122334566666666666
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.043 Score=59.57 Aligned_cols=91 Identities=16% Similarity=0.075 Sum_probs=55.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHccccccc----ccCcEEEEEecCCcCHHHHHHHHHHHhcCC---------CCCCCC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD----HFDLKAWTCVSNDFDVIRLTKTILRCITKQ---------TIDDSD 281 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~---------~~~~~~ 281 (1416)
....++.|+|.+|+|||++|.+++......+ .=..++|++....++..++. ++.+..... .....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 3467999999999999999999876421111 01457888887776655443 333332211 012234
Q ss_pred HHHHHHHHHHHhc---c-ccEEEEecccc
Q 000568 282 LNLLQEELNKQLS---R-KKFLLVLDDVW 306 (1416)
Q Consensus 282 ~~~~~~~l~~~l~---~-kr~LlVlDdv~ 306 (1416)
.+++...+.+... . +--+||+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 5555555555443 3 34488999884
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.023 Score=63.40 Aligned_cols=85 Identities=20% Similarity=0.120 Sum_probs=55.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ-----TIDDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~~~l 289 (1416)
+.-+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .+++++.. ..+....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999999887643 2233557788777665543 34444432 12334556666666
Q ss_pred HHHhc-cccEEEEecccc
Q 000568 290 NKQLS-RKKFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~-~kr~LlVlDdv~ 306 (1416)
...++ +.--+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55554 345689999984
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.031 Score=61.21 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=40.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccc----ccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQD----HFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
...+.=|+|.+|+|||.||.+++-...... .=..++|++....++..++. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 356889999999999999988875433222 22458999998889887775 4566543
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.026 Score=62.91 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=47.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccc-cccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQ-DHFDLKAWTCVSND-FDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL 293 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 293 (1416)
..++++|+|++|+||||++..++.....+ +.+ .+..++.... ......+....+.++.......+...+...+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 46799999999999999999988643322 112 3455554331 1222333333444443333334444555444443
Q ss_pred ccccEEEEeccc
Q 000568 294 SRKKFLLVLDDV 305 (1416)
Q Consensus 294 ~~kr~LlVlDdv 305 (1416)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 346777753
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.019 Score=68.21 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=55.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
+.-+++.++|++|+||||||..+++...+ .++=|++|+..+...+-..|...+........ .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------d 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------D 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHhhcccccc-------------C
Confidence 45689999999999999999988874322 26678888888877777777666554332111 2
Q ss_pred cccEEEEeccccccC
Q 000568 295 RKKFLLVLDDVWNEN 309 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~ 309 (1416)
++..-+|+|.++-..
T Consensus 386 srP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAP 400 (877)
T ss_pred CCcceEEEecccCCc
Confidence 567788999887654
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.004 Score=61.51 Aligned_cols=86 Identities=22% Similarity=0.118 Sum_probs=45.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEE
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFL 299 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 299 (1416)
|.++|++|+|||+||+.+++.. . ....-+.++...+..++....--. ... .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 5689999999999999998743 1 123345677766666554322111 000 000000000001 17889
Q ss_pred EEeccccccChhhHhhhcc
Q 000568 300 LVLDDVWNENYNDWVDMSR 318 (1416)
Q Consensus 300 lVlDdv~~~~~~~~~~~~~ 318 (1416)
+|||++...+..-+..+..
T Consensus 69 l~lDEin~a~~~v~~~L~~ 87 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLS 87 (139)
T ss_dssp EEESSCGG--HHHHHTTHH
T ss_pred EEECCcccCCHHHHHHHHH
Confidence 9999997654444444433
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.064 Score=58.00 Aligned_cols=171 Identities=21% Similarity=0.235 Sum_probs=91.2
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccc-ccccccCcEEEEEecCCc-----CHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH-RVQDHFDLKAWTCVSNDF-----DVIRL 264 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~-----~~~~~ 264 (1416)
.++|-.++...+..++..... .+...-|.|+|+.|.|||+|...+..+. ++.++| .-|...... .+..+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 478999998888888864321 1234557789999999999998777651 233333 333333322 22333
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhc------cccEEEEeccccccChhhHhh----hcccc-ccCCCCcEEEEEc
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQLS------RKKFLLVLDDVWNENYNDWVD----MSRPL-EAGAPGSKIIVTT 333 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~----~~~~l-~~~~~gs~iivTt 333 (1416)
.+++..++........+..+....+-..|+ +-++.+|+|.++---...-.. +.+.- ....+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 444433333322222233333344444443 225788888775421000001 11111 1234566778899
Q ss_pred cchH-------HHHhhCCCCeeeCCCCChhhHHHHHHHhh
Q 000568 334 RNQE-------VVAIMGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 334 R~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
|-.- |-.++.-..++-++.++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9642 22222222345567777778888877665
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0058 Score=58.67 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
||.|.|++|+||||+|+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
|
... |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.043 Score=62.01 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=51.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
+.++|+++|++|+||||++..++.... ..=..+..+..... ....+.++...+.++.+.....+.+.+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 458999999999999999999986432 22123444544322 123333444444444433333455666655554422
Q ss_pred c-ccEEEEeccccc
Q 000568 295 R-KKFLLVLDDVWN 307 (1416)
Q Consensus 295 ~-kr~LlVlDdv~~ 307 (1416)
. +.=+|++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234677887643
|
|
| >cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.034 Score=60.23 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccccc-CcEEEEEecCCcC-HHHHHHHHHHHhcCC-------CCCCCCHH---
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF-DLKAWTCVSNDFD-VIRLTKTILRCITKQ-------TIDDSDLN--- 283 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~--- 283 (1416)
+-+.++|+|..|+||||||+++++. .+.+| +.++++-+++... +.++.+++.+.=... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999999999984 33344 3455566666543 444555544321110 11111111
Q ss_pred --HHHHHHHHHh--c-cccEEEEeccc
Q 000568 284 --LLQEELNKQL--S-RKKFLLVLDDV 305 (1416)
Q Consensus 284 --~~~~~l~~~l--~-~kr~LlVlDdv 305 (1416)
...-.+.+++ + ++++|+|+||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223345555 3 88999999998
|
The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0019 Score=79.98 Aligned_cols=87 Identities=22% Similarity=0.375 Sum_probs=45.7
Q ss_pred ccCccEEEeecCCCCcc--ccccccCCCCcceEEEccC-CCccccC-----CCCCCCCccEEeEccCCCCCcCchhhhcC
Q 000568 965 SCKLEYLGLSYCQGLVT--LPQSLLNLSSLREIYIRSC-SSLVSFP-----EVALPSKLRLITIWDCEALKSLPEAWMCE 1036 (1416)
Q Consensus 965 ~~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~n-~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 1036 (1416)
++.|+.|.+..|..... +-.....++.|+.|++++| ......+ ....+++|+.|+++.+...+...-.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46677777776655443 3334556677777777763 2211111 12234556666666666444333333333
Q ss_pred CCCCcCeeEEccCCC
Q 000568 1037 TNSSLEILNIAGCSS 1051 (1416)
Q Consensus 1037 ~~~~L~~L~l~~c~~ 1051 (1416)
.+++|+.|.+.+|..
T Consensus 267 ~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSN 281 (482)
T ss_pred hCCCcceEccCCCCc
Confidence 456666666555554
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.06 Score=61.05 Aligned_cols=71 Identities=11% Similarity=0.182 Sum_probs=44.6
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchH-HHHhh-CCCCeeeCCCCChhhHHHHHHHh
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQE-VVAIM-GTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
+++-++|+|++..-+......+...+.....+..+|++|.+.. +.... ..-..+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688876655555556655544434566777776643 33322 12356889999999998888664
|
|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.059 Score=57.73 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccc--cccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHR--VQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
-|+|.++|++|.|||+|++++++... ..+.|....-+.+... .++.+-..+ ...-+..+-+.|++.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 47899999999999999999998753 3445544444433221 122221111 11233445556666666
Q ss_pred ccc--EEEEeccccc
Q 000568 295 RKK--FLLVLDDVWN 307 (1416)
Q Consensus 295 ~kr--~LlVlDdv~~ 307 (1416)
++. +.+.+|.|..
T Consensus 247 d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVES 261 (423)
T ss_pred CCCcEEEEEeHHHHH
Confidence 654 4556888843
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.044 Score=66.97 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=35.3
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999988776432 2345679999999999999999763
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.042 Score=69.36 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=68.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
..++|.+..++.|.+.+..... ........+.++|++|+|||++|+.++... .. ..+.+++++-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhcccc----
Confidence 4589999999999998864211 012234578899999999999999998743 21 23344444322111
Q ss_pred HHHHHhcCCCC-CCCCHHHHHHHHHHHhcc-ccEEEEeccccccChhhHhhhccccc
Q 000568 267 TILRCITKQTI-DDSDLNLLQEELNKQLSR-KKFLLVLDDVWNENYNDWVDMSRPLE 321 (1416)
Q Consensus 267 ~il~~l~~~~~-~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~~~~~l~ 321 (1416)
.+.+-++.+.. ...+.. ..+.+.++. ..-+|+||+++..+.+.++.+...+.
T Consensus 529 ~~~~LiG~~~gyvg~~~~---g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQG---GLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred cHHHHcCCCCCccccccc---chHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11111222111 011111 122233333 34699999998877666776665554
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.096 Score=51.99 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHhccccEEEEeccc----cccChhhHhhhccccccCCCCcEEEEEccchHHHHhhC
Q 000568 281 DLNLLQEELNKQLSRKKFLLVLDDV----WNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAIMG 343 (1416)
Q Consensus 281 ~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~ 343 (1416)
..++..-.|.+.+-+++-+++-|.- +.+ ..|+-+.-.-.-+..|..||++|-+.++...+.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~--~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPD--LSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChH--HHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3445555677788888889998853 322 345443322223557999999999998877763
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.077 Score=62.85 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=86.7
Q ss_pred eeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
++=|.++-+.++.+...-.-.. +-...+-|..+|+||+|||++|+++++. ..-.| +.+... +
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp----E 503 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP----E 503 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH----H
Confidence 3445666666665444321110 1245678889999999999999999983 33333 333221 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh-----------hhHhhhccccccCCCCcEE--E
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-----------NDWVDMSRPLEAGAPGSKI--I 330 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~~~~~l~~~~~gs~i--i 330 (1416)
+ +...- ......+.+.+++.=+--..+|.||.++.... .-...++.-+........| |
T Consensus 504 L----~sk~v-----GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 504 L----FSKYV-----GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred H----HHHhc-----CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 1 11111 11122222223333233458888888854210 0112222222222222233 3
Q ss_pred E-EccchHHHHh-hC---CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000568 331 V-TTRNQEVVAI-MG---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 331 v-TtR~~~v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 393 (1416)
- |-|...+-.. +. ....+.++.-+.+.-.++|+.++-...- .+.-++.+ |+++..|.-
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~-~~~vdl~~----La~~T~g~S 637 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF-SEDVDLEE----LAQATEGYS 637 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC-CccccHHH----HHHHhccCC
Confidence 3 3333333222 22 3356777777777778999988743222 22223444 555555543
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.031 Score=62.94 Aligned_cols=85 Identities=19% Similarity=0.119 Sum_probs=57.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ-----TIDDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~~~l 289 (1416)
+.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .++.++.. .......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999999987643 2334568899888777653 34444432 11234456666666
Q ss_pred HHHhc-cccEEEEecccc
Q 000568 290 NKQLS-RKKFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~-~kr~LlVlDdv~ 306 (1416)
...++ ++--+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 65554 345689999984
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.013 Score=63.06 Aligned_cols=43 Identities=30% Similarity=0.275 Sum_probs=35.2
Q ss_pred ehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 195 RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 195 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
|.+-+++|.+.+... ..+...+|+|.|.+|+||||+|+++...
T Consensus 3 ~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 667788888888653 2345789999999999999999999874
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.081 Score=68.11 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=92.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
.++.|.+..++++.+++...-.. +-...+-+.++|++|+|||++|+.+++.. ...| +.++.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~~----- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGPE----- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecHH-----
Confidence 35789999999988876421100 11234668899999999999999998742 2222 2222111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccCh-----------hhHhhhccccccC-CCCcEEE
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-----------NDWVDMSRPLEAG-APGSKII 330 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~~~~~l~~~-~~gs~ii 330 (1416)
+ .... .......+...+.........+|++|+++.... .....+...+... ..+..++
T Consensus 248 -i----~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 -I----MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred -H----hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1 0000 011112233333344445668999999854210 0111222222211 1233344
Q ss_pred E-EccchH-HHHhhC----CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH
Q 000568 331 V-TTRNQE-VVAIMG----TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 331 v-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 394 (1416)
| ||.... +...+. ....+.+...+.++-.+++....-+.. ...+. ....+++.+.|.--
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccccc----CHHHHHHhCCCCCH
Confidence 4 444332 222211 234577888888888888876542211 11111 23457888887653
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.0092 Score=59.44 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=42.5
Q ss_pred CCcccceeccccccCcccc--cCccccCCcCcEEecCCCCCCCCCCC-----CCccccceeeecCChhhHHh-----h-c
Q 000568 1316 PATLTYLVIADLPNLERLS--SSIFYHQNLTKLKLCNCPKLKYFPEK-----GLPASLLRLEISGCPLIEER-----Y-I 1382 (1416)
Q Consensus 1316 ~~sL~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~l~~l~~~-----~~~~sL~~L~l~~cp~l~~~-----~-~ 1382 (1416)
+++|..|.+.+ ++|..+. ..+..+|.|+.|.+-+|+ ++.-... -..++|+.||+.+-..-++. . .
T Consensus 87 ~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f~~ 164 (233)
T KOG1644|consen 87 LPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFFKG 164 (233)
T ss_pred ccccceEEecC-cchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHhcc
Confidence 34444444444 3444331 135566889999998887 4444332 12478999999876432222 1 2
Q ss_pred cCCCccccccCc
Q 000568 1383 KDGGQYRHLLTY 1394 (1416)
Q Consensus 1383 ~~~~~~~~~i~~ 1394 (1416)
+.+...|.+++.
T Consensus 165 k~~k~~~~~i~~ 176 (233)
T KOG1644|consen 165 KKGKKAAKSINR 176 (233)
T ss_pred ccchhhhhhhhh
Confidence 334445665554
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.04 Score=56.29 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD 260 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 260 (1416)
++.|+|.+|+||||+|+.+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998743 22334577777765543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.033 Score=59.96 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=32.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD 260 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 260 (1416)
...+++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 346899999999999999999998642 22234577887655443
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >PTZ00494 tuzin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.81 Score=51.88 Aligned_cols=167 Identities=13% Similarity=0.151 Sum_probs=101.1
Q ss_pred ccCCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 187 VNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.....+|.|++|-..+...|..-+ ...++++.+.|.-|.||++|.+.....+.. ..++|++.... +-++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHH
Confidence 345678999998888888886653 357899999999999999999988875433 36778887654 4567
Q ss_pred HHHHHhcCCCCCC-CC-HHHHHHHHHHH---hccccEEEEec--cccccChhhHhhhccccccCCCCcEEEEEccchHHH
Q 000568 267 TILRCITKQTIDD-SD-LNLLQEELNKQ---LSRKKFLLVLD--DVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV 339 (1416)
Q Consensus 267 ~il~~l~~~~~~~-~~-~~~~~~~l~~~---l~~kr~LlVlD--dv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~ 339 (1416)
.+.+.++.+..+. .| .+-+.+..+.. ..++.=+||+- +-.+- ..-+.+.. .|.....-|+|++---.+.+-
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL-~RVYnE~v-aLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDL-GRVYGEVV-SLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcH-HHHHHHHH-HHHccchhheeeeechHhhhc
Confidence 7888888765543 12 23333333322 33454455543 22111 01122211 223334567787755444322
Q ss_pred Hhh---CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 340 AIM---GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 340 ~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
... ..-.-|.++.++.++|.++..+..
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 111 112358899999999998876653
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.039 Score=62.24 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCCcHHH-HHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 000568 216 GFSVIPIIGMGGLGKTT-LAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL 293 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 293 (1416)
+-+||+++|+.|+|||| ||+..+.-... ..=..+..++... .....+.++..++-++.+.....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 36899999999999995 55544432211 2223456665543 33455666666666666655555666666555543
Q ss_pred ccccEEEEeccc
Q 000568 294 SRKKFLLVLDDV 305 (1416)
Q Consensus 294 ~~kr~LlVlDdv 305 (1416)
++. =+|.+|=+
T Consensus 280 ~~~-d~ILVDTa 290 (407)
T COG1419 280 RDC-DVILVDTA 290 (407)
T ss_pred hcC-CEEEEeCC
Confidence 333 34455655
|
|
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0093 Score=70.16 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=40.7
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+++|.++.+++|++.|..........-+++.++|++|+||||||+.+.+.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999994332212345689999999999999999999874
|
|
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.048 Score=61.36 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccc----cccCcEEEEEecCCcCHHHHHHHHHHHhcC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ----DHFDLKAWTCVSNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 274 (1416)
..-+++-|+|.+|+|||+++.+++...... +.=..++|++....++.+++.+ +++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 346899999999999999998877432221 1124689999988888877654 5565543
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.043 Score=54.29 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=61.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC---cCHHHHHHHHHHHhc-----CC-CCCCCCHH-----
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND---FDVIRLTKTILRCIT-----KQ-TIDDSDLN----- 283 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l~-----~~-~~~~~~~~----- 283 (1416)
..|-|++..|.||||+|...+- +..++=..+.++.+-+. ......++.+ ..+. .. .....+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4677888889999999977665 33333334455443332 2333333333 1110 00 00001111
Q ss_pred --HHHHHHHHHhcccc-EEEEecccccc---ChhhHhhhccccccCCCCcEEEEEccch
Q 000568 284 --LLQEELNKQLSRKK-FLLVLDDVWNE---NYNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 284 --~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
...+..++.+.... =|+|||++-.. ...+.+.+...+.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233444444444 49999998432 1223445555555555677999999985
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.041 Score=62.83 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=51.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
..++.++|+.|+||||++.++......+.....+..+.... .....+.++...+.++.......+..++...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 46999999999999999999987432221123445554332 2334555566666666543333333344444433 344
Q ss_pred ccEEEEeccccc
Q 000568 296 KKFLLVLDDVWN 307 (1416)
Q Consensus 296 kr~LlVlDdv~~ 307 (1416)
+ =+|++|..-.
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 4566898843
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.014 Score=61.06 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=54.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh----
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQL---- 293 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l---- 293 (1416)
+++.|.|.+|.||||+++.+.......+ ..+.+.......... +.+..+.. ..++..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCccccccc
Confidence 6888999999999999998876433322 233333332222222 22222211 111111000000000
Q ss_pred --ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchH
Q 000568 294 --SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQE 337 (1416)
Q Consensus 294 --~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 337 (1416)
..++-+||+|++...+...+..+...... .|+|+|+.=-..+
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999988766677776665544 4778877655443
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.058 Score=63.60 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=48.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
...+++|+|++|+||||++.++......+.....+..++... .......++...+.++.......+...+...+++. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 457999999999999999988876322221123344454322 11222333333333333222233444555444433 3
Q ss_pred cccEEEEecccc
Q 000568 295 RKKFLLVLDDVW 306 (1416)
Q Consensus 295 ~kr~LlVlDdv~ 306 (1416)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588888874
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.054 Score=67.78 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=75.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCC--CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDG--GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
..++|.++.+..|.+.+.....+... ....+.+.|+.|+|||-||++++.- +-+..+..+-++.++- ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhh------hh-
Confidence 45788888888888888765432222 4677889999999999999999872 3233344444544432 11
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhccccE-EEEeccccccChhhHhhhcccccc
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQLSRKKF-LLVLDDVWNENYNDWVDMSRPLEA 322 (1416)
Q Consensus 268 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~l~~ 322 (1416)
+.+.++.+.. .-..+....+.+.++.+.| +|.||||+..+.+....+...+..
T Consensus 633 vskligsp~g--yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 633 VSKLIGSPPG--YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhhccCCCcc--cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 3333333221 1112223356677777765 677999988877666655555443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0081 Score=74.82 Aligned_cols=110 Identities=19% Similarity=0.062 Sum_probs=74.3
Q ss_pred CCccEEEEecCCchh-hhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcc-cccCCCCCCCCcceE
Q 000568 1131 QSLKFLDVWECPKLE-SIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLV-SFSEGGLPCAKLTRL 1208 (1416)
Q Consensus 1131 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~-~~~~~~~~~~~L~~L 1208 (1416)
|+|+.|.+++-.+.. .......++++|..||+|++++... .+++.+++|++|.+.+-.... ..-...+.+++|+.|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 499999998876643 4556677899999999999887654 678889999999886422221 011134557889999
Q ss_pred EEccccCCCcC------cccccCcCccceeeeecCCCCCC
Q 000568 1209 EISECERLEAL------PRGLRNLTCLQHLTIGDVLSPER 1242 (1416)
Q Consensus 1209 ~l~~n~~~~~~------p~~l~~l~~L~~L~ls~n~~~~~ 1242 (1416)
|+|........ -+.-..+|.|+.||.|++.+...
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 99887654322 11123478888888887655443
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.089 Score=62.08 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
.+++.++|++|+||||++..++........-..+..|+..... ...+.++...+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4699999999999999998887633211222345556553321 122233333444443333334445555555543 2
Q ss_pred ccEEEEeccc
Q 000568 296 KKFLLVLDDV 305 (1416)
Q Consensus 296 kr~LlVlDdv 305 (1416)
..=+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3457888966
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.28 Score=54.67 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=30.4
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++=..+....+..++... +.|.|.|++|+||||+|+.++..
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH
Confidence 3444444556666666432 46889999999999999999874
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.24 Score=60.90 Aligned_cols=185 Identities=12% Similarity=0.119 Sum_probs=101.0
Q ss_pred CCeeeeehhHHHH---HHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 189 EAKVYGRETEKKE---IVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 189 ~~~~vGr~~~~~~---l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
-.++.|-++.+++ +++.|..++. -+..-++=+-++|++|.|||-||++++-... +-|++++...
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGSE--- 379 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGSE--- 379 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechHH---
Confidence 3467888765555 5555543321 0233467788999999999999999997432 3345554421
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC---------------hhhHhhhccccccCCCCc
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN---------------YNDWVDMSRPLEAGAPGS 327 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~~~~~l~~~~~gs 327 (1416)
.++.+.+.. . ..+.+.+...=...+..|.+|+++... ...++++..-......+.
T Consensus 380 -----FvE~~~g~~--a---srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 380 -----FVEMFVGVG--A---SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred -----HHHHhcccc--h---HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 111111110 0 011111112223456788888875321 011233333332222333
Q ss_pred --EEEEEccchHHHHh--hC---CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 328 --KIIVTTRNQEVVAI--MG---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 328 --~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
-++-+|...++... +. ..+.+.++.-+...-.++|..++-..... .+..++++ |+...-|.+=|..
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHHH
Confidence 33446666555432 12 34678888888899999999988443321 33445566 8888888875543
|
|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.13 Score=54.02 Aligned_cols=207 Identities=15% Similarity=0.188 Sum_probs=112.4
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc---c-ccccCcEEEEEecCC---------
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR---V-QDHFDLKAWTCVSND--------- 258 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~-~~~f~~~~wv~~~~~--------- 258 (1416)
+.++++....+..... .+..+-..++|+.|.||-|.+..+.+..- + +-.-+...|.+.+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666553 23467889999999999998877765310 0 111233445443332
Q ss_pred -c-----------CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccE-EEEeccccccChhhHhhhccccccCCC
Q 000568 259 -F-----------DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKF-LLVLDDVWNENYNDWVDMSRPLEAGAP 325 (1416)
Q Consensus 259 -~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~l~~~~~ 325 (1416)
+ .-+.+.++++++...... .+ .-..+.| ++|+-.+++-..+...+++.....-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 112334444443322110 00 0012334 666777766555555556655554456
Q ss_pred CcEEEEEccch--HHHHhhCCCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 000568 326 GSKIIVTTRNQ--EVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTLGGL 402 (1416)
Q Consensus 326 gs~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~ 402 (1416)
.+|+|+..-+. -+...-..--.+++...+++|....++..+-.++- ..+ .+++.+|+++++|.- -|+-++-..
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 67877643321 11111111235889999999999988887744332 122 578899999999865 344333322
Q ss_pred hccC-C--------CcchHHHHHhhcc
Q 000568 403 LRGK-H--------GPSDWEDVLNSNI 420 (1416)
Q Consensus 403 l~~~-~--------~~~~w~~~l~~~~ 420 (1416)
-..+ + ..-+|+-.+.+..
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHH
Confidence 1111 1 1457888776543
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.06 Score=60.54 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-|.|+|++|+|||++|+++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999874
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.077 Score=60.17 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=42.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccc----cccCcEEEEEecCCcCHHHHHHHHHHHhcC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ----DHFDLKAWTCVSNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 274 (1416)
...++.-|+|.+|+|||+|+.+++-..... +.-..++|++....|+..++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 356888999999999999999886432221 1224689999999888887654 5555543
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.19 Score=58.70 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=86.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-|.+||++|+|||-||++|++.. .-.| +++-.. +++..... .+...+...+++.=..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP----ELlNkYVG---------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP----ELLNKYVG---------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH----HHHHHHhh---------hHHHHHHHHHHHhhcCC
Confidence 4567899999999999999999943 3333 555432 22222211 12222333344443466
Q ss_pred cEEEEecccccc-----Chh------hHhhhcccccc--CCCCcEEEEEccchHHHHh--hCC---CCeeeCCCCChhhH
Q 000568 297 KFLLVLDDVWNE-----NYN------DWVDMSRPLEA--GAPGSKIIVTTRNQEVVAI--MGT---APAYQLKRLSTDDC 358 (1416)
Q Consensus 297 r~LlVlDdv~~~-----~~~------~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~--~~~---~~~~~l~~L~~~~~ 358 (1416)
.++|.||.++.- +.. -...++.-+.. ...|.-||-.|-.+++... +.. ....-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 899999999541 001 12223332322 2357778877776655422 222 34677788888888
Q ss_pred HHHHHHhhcCCCCC-CCChhHHHHHHHHHHhcCCCh
Q 000568 359 LSVFTQHSLDSRDF-SSNKSLEEIGKKIVIKCNGLP 393 (1416)
Q Consensus 359 ~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~glP 393 (1416)
.++++...-....+ ..+-.+.++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888877432221 223345564432 3455543
|
|
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.18 Score=51.59 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+|.|.|++|+||||+|+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.015 Score=59.00 Aligned_cols=41 Identities=24% Similarity=0.092 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND 258 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 258 (1416)
..++.+.|+.|+|||.+|+.+...... +.....+-++.+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcc
Confidence 468889999999999999999874321 33344555555543
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.061 Score=53.37 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
||.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
|
... |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.17 Score=52.50 Aligned_cols=121 Identities=15% Similarity=0.183 Sum_probs=64.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE---ecCCcCHHHHH------HHHHHHhcCCC-----CCC-CC
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC---VSNDFDVIRLT------KTILRCITKQT-----IDD-SD 281 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~------~~il~~l~~~~-----~~~-~~ 281 (1416)
-.+++|+|..|.|||||++.++... ......+++. +.. .+..... -++++.++... ... ..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4689999999999999999998642 2233344432 211 1111111 11344443321 111 12
Q ss_pred HHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhccccccC-CC-CcEEEEEccchHHHHh
Q 000568 282 LNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAG-AP-GSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~-gs~iivTtR~~~v~~~ 341 (1416)
.+...-.+.+.+-..+-++++|+--.. +....+.+...+... .. |..||++|.+.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 233334456666777889999987432 222233333333321 12 6678888887665433
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.055 Score=56.40 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.0078 Score=37.13 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=11.4
Q ss_pred cceeeccCCCccccCccccc
Q 000568 607 FTVLNLSRTNIRNLPESITK 626 (1416)
Q Consensus 607 L~~L~Ls~~~i~~lp~~i~~ 626 (1416)
|++|||++|+|+.+|++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 45566666666666555443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.12 Score=60.62 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=50.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTID---DSDLNLLQEELN 290 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~ 290 (1416)
....+|.++|.+|+||||+|..++...... .+ .+..|++.. .....+.++.+..+++.+... ..+...+.....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 357899999999999999999998744322 22 334444322 123345566666666544222 123333333333
Q ss_pred HHhccccEEEEecccc
Q 000568 291 KQLSRKKFLLVLDDVW 306 (1416)
Q Consensus 291 ~~l~~kr~LlVlDdv~ 306 (1416)
+.+.+. -+||+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333343 568888873
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.052 Score=59.22 Aligned_cols=81 Identities=23% Similarity=0.243 Sum_probs=47.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
..-+.++|.+|+|||.||.++.+..- + .--.+.++++ .++..++...... . .....+.+.++ +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~-~g~sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-K-AGISVLFITA------PDLLSKLKAAFDE----G----RLEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-H-cCCeEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHhh-c
Confidence 45688999999999999999998543 2 2223455543 3445555444432 1 11122222221 1
Q ss_pred cEEEEeccccccChhhHh
Q 000568 297 KFLLVLDDVWNENYNDWV 314 (1416)
Q Consensus 297 r~LlVlDdv~~~~~~~~~ 314 (1416)
-=||||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 238999999665444444
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.24 Score=60.66 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=83.7
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
...++|+...+.++.+.+..-.. .-.-|.|+|..|+|||++|+.+++.... .-...+.|++..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHh
Confidence 35689999999998888865422 2346779999999999999999874221 112345566655332 1111122
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEccchH
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTTRNQE 337 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR~~~ 337 (1416)
.....+..... ..+ ....+. ....=.|+||+|..-.......+...+..+. ...|||.||...-
T Consensus 259 fG~~~g~~~ga-~~~-~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l 333 (509)
T PRK05022 259 FGHVKGAFTGA-ISN-RSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDL 333 (509)
T ss_pred cCccccccCCC-ccc-CCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCH
Confidence 21111100000 000 000111 1122347899998776666666665543321 2458888886531
Q ss_pred ---HHHh-hC-------CCCeeeCCCCChh
Q 000568 338 ---VVAI-MG-------TAPAYQLKRLSTD 356 (1416)
Q Consensus 338 ---v~~~-~~-------~~~~~~l~~L~~~ 356 (1416)
+... +. ....+.+++|.+.
T Consensus 334 ~~~~~~~~f~~dL~~rl~~~~i~lPpLreR 363 (509)
T PRK05022 334 REEVRAGRFRADLYHRLSVFPLSVPPLRER 363 (509)
T ss_pred HHHHHcCCccHHHHhcccccEeeCCCchhc
Confidence 1110 10 1245788888763
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.065 Score=62.74 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQTI---DDSDLNLLQEELNK 291 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~ 291 (1416)
...+|.++|.+|+||||+|..++.....+. -..+..|++... ....+.++...+..+.+.. ...+...+.....+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 368999999999999998888876332220 122344443321 1223344445555543321 12344444443333
Q ss_pred HhccccE-EEEecccc
Q 000568 292 QLSRKKF-LLVLDDVW 306 (1416)
Q Consensus 292 ~l~~kr~-LlVlDdv~ 306 (1416)
..+.+.| +||+|-.-
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3344444 66666653
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.16 Score=50.18 Aligned_cols=106 Identities=19% Similarity=0.142 Sum_probs=56.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
-.+++|+|..|.|||||++.+..-.. .....+|+.... .+.-- .+-...+...-.+.+.+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 36899999999999999999986432 123333332100 00000 00111122223355566667
Q ss_pred cEEEEecccccc-ChhhHhhhccccccCCCCcEEEEEccchHHHHh
Q 000568 297 KFLLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 297 r~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 341 (1416)
.-++++|+.... +......+...+... +..||++|.+.+....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 778899987432 222333333333332 2467788777655543
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.071 Score=62.45 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTI---DDSDLNLLQEELNK 291 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~ 291 (1416)
...++.++|.+|+||||+|..++.....+..+ .+..|++.. .....+.++.....++.+.. ...+..++.....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 36799999999999999998887642211222 233444332 12233444455555544322 12334444433333
Q ss_pred HhccccE-EEEecccc
Q 000568 292 QLSRKKF-LLVLDDVW 306 (1416)
Q Consensus 292 ~l~~kr~-LlVlDdv~ 306 (1416)
....+.| +||+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4444555 77777764
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.069 Score=58.49 Aligned_cols=134 Identities=20% Similarity=0.300 Sum_probs=72.0
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccc-ccccccCcEEE----EEecCCcC------
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH-RVQDHFDLKAW----TCVSNDFD------ 260 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~w----v~~~~~~~------ 260 (1416)
+-+|..+..--.++|+++ .+..|.+.|.+|.|||.||.+..-.. ..+..|..++- +.++++..
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 345677777777788665 47899999999999999986554321 22334433222 23333221
Q ss_pred ---HHHHHHHH---HHHhcCCCCCCCCHHHHHHHH-H---------HHhccc---cEEEEeccccccChhhHhhhccccc
Q 000568 261 ---VIRLTKTI---LRCITKQTIDDSDLNLLQEEL-N---------KQLSRK---KFLLVLDDVWNENYNDWVDMSRPLE 321 (1416)
Q Consensus 261 ---~~~~~~~i---l~~l~~~~~~~~~~~~~~~~l-~---------~~l~~k---r~LlVlDdv~~~~~~~~~~~~~~l~ 321 (1416)
+.--.+.| ++.+..... .. +...+.+ . .+++++ +-+||+|...+-...+...+ +-
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~--~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---lt 373 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNE--PG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LT 373 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccc--cc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HH
Confidence 11111222 222222111 11 2222222 1 123344 46899999977655444444 44
Q ss_pred cCCCCcEEEEEccchH
Q 000568 322 AGAPGSKIIVTTRNQE 337 (1416)
Q Consensus 322 ~~~~gs~iivTtR~~~ 337 (1416)
..+.||||+.|---.+
T Consensus 374 R~G~GsKIVl~gd~aQ 389 (436)
T COG1875 374 RAGEGSKIVLTGDPAQ 389 (436)
T ss_pred hccCCCEEEEcCCHHH
Confidence 5578999998876443
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.052 Score=64.29 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc--CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF--DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
..-|.|.|+.|+|||+||+++++... +.+.-.+.+|+++.-. ..+.+++.+ ...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHHh
Confidence 45688999999999999999998544 4444456666665532 223332222 223445566
Q ss_pred cccEEEEecccc
Q 000568 295 RKKFLLVLDDVW 306 (1416)
Q Consensus 295 ~kr~LlVlDdv~ 306 (1416)
..+-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 778999999995
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.02 Score=54.96 Aligned_cols=27 Identities=37% Similarity=0.351 Sum_probs=22.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRV 243 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 243 (1416)
.--|+|.|++|+||||+++.+.+..+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 356899999999999999999975433
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.18 Score=52.86 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhcccccc--CCCCcEEEEEccchHHHHhh
Q 000568 282 LNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEA--GAPGSKIIVTTRNQEVVAIM 342 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~ 342 (1416)
.++..-.+.+.|-..+-+|+.|+=-.. +...-+.+...+.. ...|..||+.|-+..+|..+
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 344445677888888889999974211 11222233333332 23478899999999998864
|
|
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.094 Score=59.92 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=41.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccc----cCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH----FDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
...++-|+|++|+|||++|.+++........ =..++|++....++..++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 4689999999999999999999864322211 14789999988888776653 444443
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.11 Score=59.86 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccc--ccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQD--HFDLKAWTCVSND-FDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQ 292 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 292 (1416)
..++|.++|+.|+||||.+..++....... +-..+..++.... ......++...+.++.+.......+++...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999998886433221 1123444544432 2233345555555555433334555555555543
Q ss_pred hccccEEEEeccccc
Q 000568 293 LSRKKFLLVLDDVWN 307 (1416)
Q Consensus 293 l~~kr~LlVlDdv~~ 307 (1416)
.+.-+|++|.+-.
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456888998844
|
|
| >COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.086 Score=57.47 Aligned_cols=89 Identities=22% Similarity=0.149 Sum_probs=57.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHH-hcCC-CCCCCCHHH---HHHH
Q 000568 214 DGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRC-ITKQ-TIDDSDLNL---LQEE 288 (1416)
Q Consensus 214 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-l~~~-~~~~~~~~~---~~~~ 288 (1416)
-+..+++=|+|+.|.||||+|.+++-. .+..-..++|++.-..++...+.. +... +..- .....+.++ +++.
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 346789999999999999999998764 333344789999999898876643 3333 2211 112333333 3333
Q ss_pred HHHHhccccEEEEeccc
Q 000568 289 LNKQLSRKKFLLVLDDV 305 (1416)
Q Consensus 289 l~~~l~~kr~LlVlDdv 305 (1416)
+.+....+--|+|+|.|
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 33433334568999988
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.043 Score=62.63 Aligned_cols=52 Identities=31% Similarity=0.314 Sum_probs=37.9
Q ss_pred Ceeeeeh---hHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 190 AKVYGRE---TEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 190 ~~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
.++-|-| .|+++|+++|.++.. -++.-++-|.++|++|.|||-||++|+-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3566765 467888888865432 123346778899999999999999998743
|
|
| >PLN03186 DNA repair protein RAD51 homolog; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.067 Score=60.73 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=41.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHccccccc----ccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD----HFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
....++-|+|.+|+|||++|..++....... .-..++|++....++.+++. ++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 3467899999999999999988875322211 11368999999988887764 5566554
|
|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.041 Score=55.73 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=43.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc--cc
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR--KK 297 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~--kr 297 (1416)
+.|.|.+|+|||++|.++... ....++++.-.+.++.+ ..+.|.+..... .......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 578999999999999998763 22356677666666543 333333321111 1112211222233333321 23
Q ss_pred EEEEeccc
Q 000568 298 FLLVLDDV 305 (1416)
Q Consensus 298 ~LlVlDdv 305 (1416)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999997
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.14 Score=52.94 Aligned_cols=118 Identities=19% Similarity=0.080 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcC--CC------------CCC-CC
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK--QT------------IDD-SD 281 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~------------~~~-~~ 281 (1416)
-.+++|.|..|.|||||++.+..-... -...+++.-. +.......+-+.++- +. ... ..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 358999999999999999999864221 1223332211 111110111111110 00 011 11
Q ss_pred HHHHHHHHHHHhccccEEEEecccccc-ChhhHhhhccccccCCCCcEEEEEccchHHHH
Q 000568 282 LNLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 340 (1416)
.+...-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+.+...
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122223455666677788999987543 11222233333322223667888888876554
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.097 Score=57.02 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=54.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCC------------------
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQT------------------ 276 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------------ 276 (1416)
...+++.|+|.+|+|||++|.++.... .+ .=..++|++..+. ...+.+.+ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 356899999999999999999986532 11 2346788888654 34444432 2232110
Q ss_pred --CCCCCHHHHHHHHHHHhcc-ccEEEEecccc
Q 000568 277 --IDDSDLNLLQEELNKQLSR-KKFLLVLDDVW 306 (1416)
Q Consensus 277 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 306 (1416)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335666666666654 45589999984
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.4 Score=50.91 Aligned_cols=176 Identities=18% Similarity=0.192 Sum_probs=89.1
Q ss_pred eeeeehhHHHHHHHHHhcCC------CCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDD------LRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 264 (1416)
++-|.+..++.|.+...-.- .......+-|.++|++|.||+.||++|+... ...| .++|.. ++
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--nSTF-----FSvSSS----DL 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--NSTF-----FSVSSS----DL 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--CCce-----EEeehH----HH
Confidence 56788888888877543210 0022346789999999999999999999742 2333 344432 11
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-ccccEEEEecccccc-------ChhhHhhhcccc-------ccCCCCcEE
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQL-SRKKFLLVLDDVWNE-------NYNDWVDMSRPL-------EAGAPGSKI 329 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-------~~~~~~~~~~~l-------~~~~~gs~i 329 (1416)
+....+ +.+.+...+-+.- ++|.-+|.+|.|+.. +.+.-..+...| .....|.-|
T Consensus 203 ----vSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 203 ----VSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred ----HHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 111111 1122333332222 468889999999642 111111121111 122345555
Q ss_pred EEEccchHHHHhh---CCCCeeeCCCCChhhH-HHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCC
Q 000568 330 IVTTRNQEVVAIM---GTAPAYQLKRLSTDDC-LSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGL 392 (1416)
Q Consensus 330 ivTtR~~~v~~~~---~~~~~~~l~~L~~~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 392 (1416)
+-.|..+-+.... .....+-+ +|++..| ..+|+-+.+.....--.+++ ++++++..|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~LT~~d~----~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVLTEQDF----KELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccccchhhH----HHHHhhcCCC
Confidence 5567665444332 12233434 4555555 45676666433222222333 4466666664
|
|
| >TIGR02239 recomb_RAD51 DNA repair protein RAD51 | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.082 Score=59.74 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=39.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccc---c-ccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ---D-HFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
....++.|+|.+|+|||+||..++...... + .-..++|++....++..++ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 346899999999999999999887532221 1 1235789998887777663 34455443
|
This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.028 Score=58.42 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=60.9
Q ss_pred hhccCCcccEEeeccCCCcccccc----cccCCCCcceeeeccCCCcccccCCC--------------CCCCCcceEEEc
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPS----GLHNLCQLQRISIWCCGNLVSFSEGG--------------LPCAKLTRLEIS 1211 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~----~l~~l~~L~~L~L~~~~~l~~~~~~~--------------~~~~~L~~L~l~ 1211 (1416)
.+-.|+.|+..+||.|.+....|+ .+++-+.|.+|.+++|. +.-+..+- ..-|.|+++.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 355677888888888776555443 34556777778776443 32221110 113677777777
Q ss_pred cccCCCcC----cccccCcCccceeeeecCCCCCC--CCCCCCC--CCCCcceeEecCCCC
Q 000568 1212 ECERLEAL----PRGLRNLTCLQHLTIGDVLSPER--DPEDEDR--LPTNLHSLNIDNMKS 1264 (1416)
Q Consensus 1212 ~n~~~~~~----p~~l~~l~~L~~L~ls~n~~~~~--~~~~~~~--l~~~L~~L~l~~~~~ 1264 (1416)
.|++.... ...+.+-..|+.+.+..|-|..- ....+.+ ...+|+.|+++.|..
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 77654221 11233335677777777743221 1001111 125677777777653
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.1 Score=50.20 Aligned_cols=157 Identities=8% Similarity=0.080 Sum_probs=89.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccccc------c--cccCcEEEEEe-cCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRV------Q--DHFDLKAWTCV-SNDFDVIRLTKTILRCITKQTIDDSDLNLLQE 287 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~------~--~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 287 (1416)
..+..++|..|.||+++|+.+.+..-. . .|=+...++.. +....+.++ +++.+.+.-...
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~~---------- 86 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSSF---------- 86 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCCc----------
Confidence 467779999999999999998774311 1 11112333321 111222221 122222211100
Q ss_pred HHHHHhccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEcc-chHHHHh-hCCCCeeeCCCCChhhHHHHHHHh
Q 000568 288 ELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTR-NQEVVAI-MGTAPAYQLKRLSTDDCLSVFTQH 365 (1416)
Q Consensus 288 ~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 365 (1416)
-.+++=++|+|+++.......+.+...+..-..++.+|++|. ...+... ......+++.++++++..+.+...
T Consensus 87 -----~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 87 -----VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred -----ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 014677889999977665667777777766556777776554 4444433 233467999999999998877654
Q ss_pred hcCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000568 366 SLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 399 (1416)
. . + .+.++.++...+|.=-|+..+
T Consensus 162 ~---~----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 162 N---K----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred C---C----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 1 1 1 133555666777633455543
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.15 Score=52.38 Aligned_cols=118 Identities=21% Similarity=0.187 Sum_probs=59.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC--CcCHHHHHHHHHHHhcC--CC---CC-------CCCH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN--DFDVIRLTKTILRCITK--QT---ID-------DSDL 282 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~--~~---~~-------~~~~ 282 (1416)
-.+++|+|+.|.|||||.+.++.-.. ...+.+++.-.. ....... .+.++- +. .. -...
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 46899999999999999999986422 223333332111 0011111 011110 00 00 0111
Q ss_pred HHHHHHHHHHhccccEEEEecccccc-ChhhHhhhccccccCCCCcEEEEEccchHHHHh
Q 000568 283 NLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 283 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 341 (1416)
+...-.+.+.+..+.-++++|+-... +......+...+.....+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 12223355666677789999987432 112222333333222235678888888766543
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.069 Score=59.52 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
..++.++|||++|.|||.+|++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999853
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.14 Score=52.24 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=59.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccc---ccccc---cC--cEEEEEecCCcCHHHHHHHHHHHhcCCCC------CCCC-
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH---RVQDH---FD--LKAWTCVSNDFDVIRLTKTILRCITKQTI------DDSD- 281 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~------~~~~- 281 (1416)
-.+++|+|+.|+|||||.+.+..+. ++... |. .+.|+ .+ .+.++.++.... ..-+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999886421 11111 10 12232 11 345555553211 1111
Q ss_pred HHHHHHHHHHHhccc--cEEEEecccccc-ChhhHhhhcccccc-CCCCcEEEEEccchHHHH
Q 000568 282 LNLLQEELNKQLSRK--KFLLVLDDVWNE-NYNDWVDMSRPLEA-GAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~iivTtR~~~v~~ 340 (1416)
.....-.+.+.+-.+ .=++++|..-.. +......+...+.. ...|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122223345555556 678888887432 22222333333322 124677888888876653
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.067 Score=51.53 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ 275 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 275 (1416)
+|.|-|++|+||||+|+.+++..... .| +.-.+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999854322 11 2335778888877654
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.18 Score=51.61 Aligned_cols=104 Identities=17% Similarity=0.137 Sum_probs=55.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE------ecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC------VSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELN 290 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 290 (1416)
-.+++|+|+.|+|||||++.+..-.. .....+++. +.+... -...+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 36999999999999999999886322 122222221 111111 111222333455
Q ss_pred HHhccccEEEEecccccc-ChhhHhhhccccccC--CCCcEEEEEccchHHHHh
Q 000568 291 KQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAG--APGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 291 ~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~--~~gs~iivTtR~~~v~~~ 341 (1416)
+.+..+.-++++|.--.. +......+...+... ..+..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 666667788999987432 112222233333221 123567777777655443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.048 Score=57.39 Aligned_cols=111 Identities=12% Similarity=0.154 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
.+|.|+|+.|+||||+++.+... ........++.-. ++.. ..... ...+..+.....+.....+.++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e-~~~E--~~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIE-DPIE--FVHES-KRSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEc-CCcc--ccccC-ccceeeecccCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999987763 2222233333221 1111 00000 00000000001122334556777777667
Q ss_pred EEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHH
Q 000568 298 FLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVV 339 (1416)
Q Consensus 298 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~ 339 (1416)
=.|++|.+.+. +........ ...|-.|+.|+-...+.
T Consensus 76 d~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 79999999654 333332222 22455677676655443
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.1 Score=55.69 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.11 Score=54.47 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=43.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccC---cEEEEEecCCcCHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHHH
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFD---LKAWTCVSNDFDVIRLTKTILRCI----TKQTIDDSDLNLLQEELNK 291 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~il~~l----~~~~~~~~~~~~~~~~l~~ 291 (1416)
||+|.|.+|+||||+|+++....... ... ....+....-......... -... .-......+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~-~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR-GIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC-TTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc-CcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 79999999999999999998743211 122 1333333222222222111 1111 1112344567777777777
Q ss_pred HhccccEEE
Q 000568 292 QLSRKKFLL 300 (1416)
Q Consensus 292 ~l~~kr~Ll 300 (1416)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665433
|
7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: |
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.17 Score=57.78 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=39.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccc----cccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ----DHFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
....++-|+|.+|+|||||+..++...... +.-..++|++....++..++ .++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 456899999999999999999887543321 11235679988777776663 44455544
|
|
| >COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.068 Score=55.26 Aligned_cols=79 Identities=23% Similarity=0.192 Sum_probs=42.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC-HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD-VIRLTKTILRCITKQTIDDSDLNLLQEELNKQL 293 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 293 (1416)
.++.+|+|.|.+|+||||+|+.++.. ..... +.-++...-+. ......+--....-......+.+-+.+.|...+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 35689999999999999999999983 33221 11122111111 000000000011111234456677777777777
Q ss_pred cccc
Q 000568 294 SRKK 297 (1416)
Q Consensus 294 ~~kr 297 (1416)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 7776
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.13 Score=52.30 Aligned_cols=118 Identities=17% Similarity=0.083 Sum_probs=61.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC--CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN--DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
-.+++|+|..|.|||||.+.++... ......+++.... ..+..+..+ +.++.. .+-...+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 3589999999999999999998632 2233444442211 111111111 111110 111222333344556666
Q ss_pred cccEEEEecccccc-ChhhHhhhccccccC-CCCcEEEEEccchHHHHh
Q 000568 295 RKKFLLVLDDVWNE-NYNDWVDMSRPLEAG-APGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~ 341 (1416)
.+.-++++|+.... +......+...+... ..|..||++|.+......
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 77788889987432 222233333333221 236678888888664433
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.14 Score=57.72 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=55.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
..+++.++|+.|+||||++..++.....++ ..+.+++.... ....+.++...+.++.......+.+++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 468999999999999999999886432221 34556665432 233455666666665443334556666555544321
Q ss_pred -cccEEEEeccccc
Q 000568 295 -RKKFLLVLDDVWN 307 (1416)
Q Consensus 295 -~kr~LlVlDdv~~ 307 (1416)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3345777887643
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.11 Score=53.46 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998864
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.17 Score=62.56 Aligned_cols=132 Identities=13% Similarity=0.102 Sum_probs=72.2
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc-cccccCcEEEEEecCCcCHHHHHHH
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR-VQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
...++|....+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++... ... ..+.+++..-.. ..+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~---pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKR---PFVKVNCAALSE--TLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCC---CeEEeecCCCCH--HHHHH
Confidence 45799999999998888754321 234567999999999999999987421 222 234455544321 22221
Q ss_pred HHHHhcCCCCCC--CCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEcc
Q 000568 268 ILRCITKQTIDD--SDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTTR 334 (1416)
Q Consensus 268 il~~l~~~~~~~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR 334 (1416)
.+.+..... .........+ -....-.|+||+|..-....+..+...+..+. ...|||+||.
T Consensus 266 ---~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 111111000 0000000000 01234468899998766666666665553321 1358888776
Q ss_pred c
Q 000568 335 N 335 (1416)
Q Consensus 335 ~ 335 (1416)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.15 Score=54.34 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=71.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-----CcCHHHHHHHHHHHhcCCC------CCCCCHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-----DFDVIRLTKTILRCITKQT------IDDSDLNLL 285 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~------~~~~~~~~~ 285 (1416)
..+++|+|..|+||||+++.+..= ...-.+.+++...+ .....+...++++..+... ...-+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 468999999999999999999862 22223333333211 2223345566666666432 111222333
Q ss_pred H-HHHHHHhccccEEEEeccccccC-hhhHhhhcccccc--CCCCcEEEEEccchHHHHhhCC
Q 000568 286 Q-EELNKQLSRKKFLLVLDDVWNEN-YNDWVDMSRPLEA--GAPGSKIIVTTRNQEVVAIMGT 344 (1416)
Q Consensus 286 ~-~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~~~ 344 (1416)
+ -.+.+.|.-+.=+||.|..-+.- ...-..+...+.. ...|-..+..|-+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3 34677788889999999874321 1111122222211 2346677888888777776543
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.02 Score=58.94 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=57.01 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=47.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc--CHHHHHHHHHHHhcCCCCC---CCCHHH-HHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF--DVIRLTKTILRCITKQTID---DSDLNL-LQEEL 289 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~---~~~~~~-~~~~l 289 (1416)
+..++.++|++|+||||++..++..... ..+ .++.+.. ..+ ...+.++.....++..... ..+... +.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4689999999999999988888764321 223 2333432 222 2334455566666543221 122222 22333
Q ss_pred HHHhccccEEEEeccccc
Q 000568 290 NKQLSRKKFLLVLDDVWN 307 (1416)
Q Consensus 290 ~~~l~~kr~LlVlDdv~~ 307 (1416)
...-....=+|++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 332222223888898744
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.1 Score=59.61 Aligned_cols=134 Identities=14% Similarity=0.043 Sum_probs=71.4
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 270 (1416)
.++|+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..... .-...+.+++.... ...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 589999999888888765421 2345779999999999999999863211 11123445555432 2222222221
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEccch
Q 000568 271 CITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTTRNQ 336 (1416)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR~~ 336 (1416)
.-.+. ...... .....+. ....=.|+||+|..-.......+...+..+. ...|||+||...
T Consensus 80 ~~~~~-~~g~~~-~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGA-FTGAQK-RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccc-cCCccc-ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 11000 000000 0001111 1223358899998776555666655443221 135888887653
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.25 Score=60.64 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=74.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
...+.+-++|++|.|||.||+++++. ....| +.+... +++... -......+...+...-+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~--------~l~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS--------ELLSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH--------HHhccc-----cchHHHHHHHHHHHHHc
Confidence 34568999999999999999999982 33333 222211 111110 11122233334444446
Q ss_pred cccEEEEecccccc------C-h----hhHhhhcccccc--CCCCcEEEEEccchHHHHhh-----CCCCeeeCCCCChh
Q 000568 295 RKKFLLVLDDVWNE------N-Y----NDWVDMSRPLEA--GAPGSKIIVTTRNQEVVAIM-----GTAPAYQLKRLSTD 356 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~------~-~----~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~ 356 (1416)
.....|.+|.++.- + . .-...+...+.. ...+..||-||-........ .-...+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 77899999999541 0 0 112223333322 22333445555544332211 22357889999999
Q ss_pred hHHHHHHHhhc
Q 000568 357 DCLSVFTQHSL 367 (1416)
Q Consensus 357 ~~~~lf~~~~~ 367 (1416)
+..+.|..+.-
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999999874
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.13 Score=56.85 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=48.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH--HHHHHHHHHHhcCCCC---CCCCH-HHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV--IRLTKTILRCITKQTI---DDSDL-NLLQEE 288 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~---~~~~~-~~~~~~ 288 (1416)
...+++.++|++|+||||++..++.... ..-..+.+++.. .+.. .+.++...+..+.... ...+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3468999999999999999988886432 222345555543 2322 2333444454443211 11222 222334
Q ss_pred HHHHhccccEEEEecccc
Q 000568 289 LNKQLSRKKFLLVLDDVW 306 (1416)
Q Consensus 289 l~~~l~~kr~LlVlDdv~ 306 (1416)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444333444577888763
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.37 Score=59.76 Aligned_cols=155 Identities=15% Similarity=0.237 Sum_probs=82.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc-----CcEEEEEecCCcCHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF-----DLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~ 264 (1416)
..++||++|++++++.|..... . - -.++|.+|+|||++|.-++... +.+.- +..++. .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---N-N--PvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s-L--------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---N-N--PVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS-L--------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---C-C--CeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-e---------
Confidence 4589999999999999976432 1 1 2367999999999987777631 11111 111111 0
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-ccccEEEEecccccc---------ChhhHhhhccccccCCCCcEEEEEcc
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQL-SRKKFLLVLDDVWNE---------NYNDWVDMSRPLEAGAPGSKIIVTTR 334 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR 334 (1416)
++..-+.+... ..+.++....+-+.+ +.++..+++|.+... ..+.-+-+..+|..+ .-++|-.|.
T Consensus 233 --D~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT 307 (786)
T COG0542 233 --DLGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATT 307 (786)
T ss_pred --cHHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEecc
Confidence 11111111111 233344333333333 345899999998542 011111222222222 135554444
Q ss_pred chHHHHhh-------CCCCeeeCCCCChhhHHHHHHHhh
Q 000568 335 NQEVVAIM-------GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 335 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 366 (1416)
..+.-... .....+.+...+.+++..+++-..
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 32222111 234678899999999999887544
|
|
| >PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.072 Score=59.32 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=52.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQT-----IDDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 289 (1416)
+..+++-|+|+.|+||||||..+... .+..-..++|++....++... ++.++.+. ..+...++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 34679999999999999999988874 333345688999888766533 33443321 1234456666666
Q ss_pred HHHhccc-cEEEEecccc
Q 000568 290 NKQLSRK-KFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~~k-r~LlVlDdv~ 306 (1416)
...++.. --++|+|.|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 6666543 4588899884
|
In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A .... |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.29 Score=49.87 Aligned_cols=118 Identities=13% Similarity=0.016 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccccc-ccc--cC---cEEEEEecCCcCHHHHHHHHHHHhcC-CCCCCCCHHHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRV-QDH--FD---LKAWTCVSNDFDVIRLTKTILRCITK-QTIDDSDLNLLQEEL 289 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~l 289 (1416)
-.+++|+|..|.|||||++.+...... .+. ++ .+.++ .+..... ...+.+.+.. ....-...+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccc--cccHHHHhhccCCCCCCHHHHHHHHH
Confidence 468999999999999999999874321 111 11 12222 2222111 0112222211 111122223333445
Q ss_pred HHHhccccEEEEecccccc-ChhhHhhhccccccCCCCcEEEEEccchHHHH
Q 000568 290 NKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 290 ~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 340 (1416)
.+.+-.++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 5666667778888886332 112222333333222 356778887766543
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.15 Score=58.17 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=40.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccc----ccCcEEEEEecCCcCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQD----HFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 273 (1416)
...++-|+|.+|+|||++|.+++....... .-..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 468999999999999999999976533211 11368999998888877654 4444443
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.19 Score=55.98 Aligned_cols=82 Identities=17% Similarity=0.059 Sum_probs=43.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH--HHHHhcCCCCCCCCHHHHHHHHHH
Q 000568 214 DGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT--ILRCITKQTIDDSDLNLLQEELNK 291 (1416)
Q Consensus 214 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~--il~~l~~~~~~~~~~~~~~~~l~~ 291 (1416)
.+..-+|+|.|.+|+||||+|+.+..-......-..+.-++...-+...+.+.+ ++.. ....+.-+.+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~--kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKR--KGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhcccc--CCCcccccHHHHHHHHHH
Confidence 345789999999999999999988763211101122333443332222222211 1111 112344566666666666
Q ss_pred Hhcccc
Q 000568 292 QLSRKK 297 (1416)
Q Consensus 292 ~l~~kr 297 (1416)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 655554
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.19 Score=55.61 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.15 Score=65.17 Aligned_cols=135 Identities=15% Similarity=0.084 Sum_probs=73.2
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
..++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.++...... -...+.+++..-.. ..+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~~-~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMPA-GLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCCh-hHhhhhhc
Confidence 3689999988888777654321 23467899999999999999998743111 12344455554321 11111222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccC-----------CCCcEEEEEccch
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAG-----------APGSKIIVTTRNQ 336 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~iivTtR~~ 336 (1416)
....+.. .... ......+. ....=.|+||+|..-.......+...+..+ ..+.|||.||...
T Consensus 449 g~~~~~~-~g~~-~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAF-TGAS-AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccc-cccc-cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111100 0000 01111121 123457999999876655555665554322 1345888888653
|
|
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.043 Score=55.70 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=42.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC--CCCC-CCHHHHHHHHHHHhcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ--TIDD-SDLNLLQEELNKQLSR 295 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~--~~~~-~~~~~~~~~l~~~l~~ 295 (1416)
++.|.|.+|+||||+|..+...... .+.++.-....+ .+..+.|....... .+.. .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6889999999999999999864211 233443333332 34444544333222 1111 1112233344443333
Q ss_pred ccEEEEeccc
Q 000568 296 KKFLLVLDDV 305 (1416)
Q Consensus 296 kr~LlVlDdv 305 (1416)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 237899987
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.18 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+...+++|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.28 Score=54.93 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=36.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHh
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCI 272 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 272 (1416)
..++.|.|.+|+||||++.+++.... ..+=..++|++.... ..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 46888999999999999998876432 221245788877653 455555555543
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.03 Score=58.61 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=16.4
Q ss_pred CCcceEEEccc--cCCCcCcccccCcCccceeeeecCCCC
Q 000568 1203 AKLTRLEISEC--ERLEALPRGLRNLTCLQHLTIGDVLSP 1240 (1416)
Q Consensus 1203 ~~L~~L~l~~n--~~~~~~p~~l~~l~~L~~L~ls~n~~~ 1240 (1416)
|+|+.|.++.| +....++.....+|+|++|++++|.+.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444444444 333333333333445555555555443
|
|
| >PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.16 Score=53.61 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDLNL---- 284 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 284 (1416)
-..++|+|.+|+|||+|++++.+... -+.++++-+++.. .+.++.+++...-..+ ..+......
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 35789999999999999999988542 2345777777653 4445555553321111 111111111
Q ss_pred -HHHHHHHHh--ccccEEEEeccc
Q 000568 285 -LQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 285 -~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
..-.+.+++ +++++|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 111223333 589999999999
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A .... |
| >PRK13948 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.39 Score=49.34 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+.|.++|+.|+||||+++.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999874
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.33 Score=61.09 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=80.5
Q ss_pred eeeeehhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDL------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 264 (1416)
++.|.+..++++.+.+..... .+..-.+-|.++|++|.|||++|+.++... ...| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------h
Confidence 466776666555554322110 001113348899999999999999998743 2222 2222211 1
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC----------hhhHhh----hcccccc--CCCCcE
Q 000568 265 TKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN----------YNDWVD----MSRPLEA--GAPGSK 328 (1416)
Q Consensus 265 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----~~~~l~~--~~~gs~ 328 (1416)
.. + .. ......+...+...-...+.+|++|+++... ...+.. +...+.. ...+.-
T Consensus 222 ~~-~---~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 VE-M---FV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred HH-h---hh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 10 0 00 0112223333333334567899999996531 011211 2111111 123445
Q ss_pred EEEEccchHHHHh-h----CCCCeeeCCCCChhhHHHHHHHhhc
Q 000568 329 IIVTTRNQEVVAI-M----GTAPAYQLKRLSTDDCLSVFTQHSL 367 (1416)
Q Consensus 329 iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 367 (1416)
||.||...+.... . .....+.++..+.++-.+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 5567776553322 1 1235678888888888888887763
|
|
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.065 Score=56.11 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 199 KKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+.|.+.+... .+...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~----~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKH----KENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhc----CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666443 234589999999999999999999874
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.84 Score=47.07 Aligned_cols=188 Identities=15% Similarity=0.184 Sum_probs=95.3
Q ss_pred eeeee-hhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHH
Q 000568 191 KVYGR-ETEKKEIVELLLRDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 191 ~~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 262 (1416)
++||+ +..+++|.+.+.-.-. -+-.+++-+.++|++|.|||-||++|++. ....|+.||...
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse--- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE--- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH---
Confidence 35665 6666666665532111 02345677889999999999999999873 334556776632
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh----ccccEEEEeccccccC-----------hhh---Hhhhcccccc--
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQL----SRKKFLLVLDDVWNEN-----------YND---WVDMSRPLEA-- 322 (1416)
Q Consensus 263 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~-----------~~~---~~~~~~~l~~-- 322 (1416)
+.+..+ ++ ..+.+++.+ ..-.-.|..|.+++.. .+. .-++...+..
T Consensus 217 -lvqk~i----ge---------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 217 -LVQKYI----GE---------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred -HHHHHh----hh---------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 222111 11 111222221 2446788888886521 011 1112222222
Q ss_pred CCCCcEEEEEccchHHHHh--hCC---CCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000568 323 GAPGSKIIVTTRNQEVVAI--MGT---APAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 323 ~~~gs~iivTtR~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 397 (1416)
..+.-+||..|..-++... +.+ .+.++.++-+++.-.++++-+.-. .+..---++..+|+++....|.---++-
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk-mnl~rgi~l~kiaekm~gasgaevk~vc 361 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK-MNLTRGINLRKIAEKMPGASGAEVKGVC 361 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh-hchhcccCHHHHHHhCCCCccchhhhhh
Confidence 2345678776665444322 122 345777777777767777655421 1111112355554444433333334444
Q ss_pred HHHHHh
Q 000568 398 TLGGLL 403 (1416)
Q Consensus 398 ~~~~~l 403 (1416)
+-|++.
T Consensus 362 teagm~ 367 (404)
T KOG0728|consen 362 TEAGMY 367 (404)
T ss_pred hhhhHH
Confidence 445443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.33 Score=51.88 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=70.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccc-ccc---c-------c---CcEEEEEecCCc------CH----------------
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHR-VQD---H-------F---DLKAWTCVSNDF------DV---------------- 261 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~---~-------f---~~~~wv~~~~~~------~~---------------- 261 (1416)
.+++|+|+.|.|||||.+.+.--.. .++ . + ..+.||+-...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999986211 000 0 1 235555421111 11
Q ss_pred ------HHHHHHHHHHhcCCC-----CCCCCHHHHH-HHHHHHhccccEEEEeccc----cccChhhHhhhccccccCCC
Q 000568 262 ------IRLTKTILRCITKQT-----IDDSDLNLLQ-EELNKQLSRKKFLLVLDDV----WNENYNDWVDMSRPLEAGAP 325 (1416)
Q Consensus 262 ------~~~~~~il~~l~~~~-----~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~~~~~l~~~~~ 325 (1416)
.+...+.++..+... ...-+..+.+ -.+.+.|..+.=|+|||.- +.......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 234444555554332 1222333444 3467788889999999964 333333344444444443
Q ss_pred CcEEEEEccchHHHHh
Q 000568 326 GSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 326 gs~iivTtR~~~v~~~ 341 (1416)
|.-||++|-+-+....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 8889999988654433
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.039 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|+|.|..|+||||+|+.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.063 Score=59.64 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=44.9
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+..|+|.++.++++++.+.......+..-+|+.++|+.|.||||||..+.+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999998766545567899999999999999999988763
|
PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.19 Score=51.61 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcC--CC---CCC--------CC-H
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK--QT---IDD--------SD-L 282 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~---~~~--------~~-~ 282 (1416)
-.+++|+|..|.|||||++.++.... .....+++.-....... ....+.++- +. ... -+ .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 46899999999999999999986421 22333333211100000 011111110 00 000 11 1
Q ss_pred HHHHHHHHHHhccccEEEEecccccc-ChhhHhhhccccccC-CCCcEEEEEccchHHHHh
Q 000568 283 NLLQEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEAG-APGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 283 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~ 341 (1416)
+...-.+.+.+..++=++++|+.-.. +......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22223466677778889999987442 122223333333221 236778888888765543
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.25 Score=53.72 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=34.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
...+++.|.|.+|+|||++|.++.... . ..-..++|++..+. ...+.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeCC--HHHHHHH
Confidence 356899999999999999999876532 1 22456888887653 4444443
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.3 Score=53.70 Aligned_cols=98 Identities=21% Similarity=0.196 Sum_probs=60.8
Q ss_pred CeeeeehhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLR------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
.++=|.++-+.+|.+.+.-.-.. +-.+.+-|.++|++|.|||-+|++|+... . ..|++|-.+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--s-----L~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--S-----LNFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--e-----eeEEeecCH----H
Confidence 35667888888888876431110 11234567899999999999999999742 2 334555443 2
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccc
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWN 307 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 307 (1416)
++...+. .+.+.+.+.+.+.=..+.++|.+|.+++
T Consensus 741 LLNMYVG---------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMYVG---------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHhc---------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 3322221 1233344445555456799999999976
|
|
| >PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.066 Score=52.72 Aligned_cols=36 Identities=28% Similarity=0.068 Sum_probs=25.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC 254 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 254 (1416)
..||.|.|.+|+||||||+++.... ...-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L--~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL--FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH--HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEec
Confidence 4689999999999999999999843 33333344543
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B .... |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.19 Score=51.72 Aligned_cols=120 Identities=23% Similarity=0.236 Sum_probs=58.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC--CcCHHHHHHHHHHHhcCCC--CC-------CCCHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN--DFDVIRLTKTILRCITKQT--ID-------DSDLNLL 285 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~--~~-------~~~~~~~ 285 (1416)
-.+++|+|..|.|||||++.+..-.. .....+++.-.. ........+.+. .+.... .. -...+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 35899999999999999999986321 222333322110 011111111110 000000 00 0111222
Q ss_pred HHHHHHHhccccEEEEecccccc-ChhhHhhhcccccc-CCCCcEEEEEccchHHHH
Q 000568 286 QEELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEA-GAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 286 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~iivTtR~~~v~~ 340 (1416)
.-.+.+.+-.+.=++++|+.... +......+...+.. ...|..||++|.+.+...
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 33455556667778899987432 11222223333322 123667888888776554
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.3 Score=60.91 Aligned_cols=88 Identities=20% Similarity=0.200 Sum_probs=53.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
.+|++++|+.|+||||++.+++........-..+..+.... .....+.++...+.++.......+.+++.+.+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 57999999999999999998886432121112344444332 1224456666666666554444566666655554 344
Q ss_pred ccEEEEecccc
Q 000568 296 KKFLLVLDDVW 306 (1416)
Q Consensus 296 kr~LlVlDdv~ 306 (1416)
+. +|++|=.-
T Consensus 264 ~D-~VLIDTAG 273 (767)
T PRK14723 264 KH-LVLIDTVG 273 (767)
T ss_pred CC-EEEEeCCC
Confidence 43 77778664
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.038 Score=53.66 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 000568 220 IPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~ 240 (1416)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
|
... |
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.053 Score=57.98 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.|.|.|++|+||||+|+.++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999874
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.25 Score=57.61 Aligned_cols=86 Identities=21% Similarity=0.216 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC------CCCCCCH-----HHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ------TIDDSDL-----NLL 285 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~-----~~~ 285 (1416)
-..++|+|..|+|||||++.+..... ....+++.......++.+.....+...... ..+.... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999998876322 222344443323444554444444332111 0111111 112
Q ss_pred HHHHHHHh--ccccEEEEeccc
Q 000568 286 QEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 286 ~~~l~~~l--~~kr~LlVlDdv 305 (1416)
.-.+.+++ +++++|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22344444 478999999999
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.078 Score=53.97 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999874
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.37 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+..|+|+||+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999998764
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.14 Score=58.39 Aligned_cols=45 Identities=24% Similarity=0.179 Sum_probs=33.2
Q ss_pred eeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 192 VYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+||+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777776654321 2345789999999999999999863
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >PRK00889 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.14 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
..+|+|.|++|+||||+|+.++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998743
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.086 Score=53.85 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999985
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.17 Score=57.95 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=36.5
Q ss_pred CeeeeehhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 190 AKVYGRETEKKEIVELLLRD--------DLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..++|.++.++.+.-.+... +.......+-|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45888888888877665431 0001112467889999999999999999874
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.056 Score=57.53 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999864
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.0048 Score=64.13 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=69.5
Q ss_pred CccEEEEecCCchhhhHHhhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCC--CCCCCCcceEE
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEG--GLPCAKLTRLE 1209 (1416)
Q Consensus 1132 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~~L~~L~ 1209 (1416)
+.+.|+..+|.+.+.- ....++.|++|.||-|.+...-| +..+++|++|+|..| .+.++.+- ...+|+|++|.
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 6788999999887643 35688999999999999876544 778899999999854 33333221 12367888888
Q ss_pred EccccCCCcCcc-----cccCcCccceee
Q 000568 1210 ISECERLEALPR-----GLRNLTCLQHLT 1233 (1416)
Q Consensus 1210 l~~n~~~~~~p~-----~l~~l~~L~~L~ 1233 (1416)
|..|+-.+..+. .+.-+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 888887765533 345577777775
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.058 Score=57.58 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999874
|
|
| >cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.34 Score=48.19 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
|
The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.73 Score=47.20 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=67.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEec-------------------CCc------------------
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVS-------------------NDF------------------ 259 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~------------------ 259 (1416)
..|++|+|+.|+|||||.+-+-.=. ..=.+.+|+.-. +.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 4699999999999999999886522 222334444321 111
Q ss_pred -------CHHHHHHHHHHHhcCCCC------CCCCHHHHHHHHHHHhccccEEEEeccccccC-hhhHhhhcccccc-CC
Q 000568 260 -------DVIRLTKTILRCITKQTI------DDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN-YNDWVDMSRPLEA-GA 324 (1416)
Q Consensus 260 -------~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~l~~-~~ 324 (1416)
..++...++++..+.... .-+...+..-.|.+.|.-++=++.+|..-+.- .+.-.++...... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 123344444444443211 11223344456788888888899999985541 1222223222222 23
Q ss_pred CCcEEEEEccchHHHHhh
Q 000568 325 PGSKIIVTTRNQEVVAIM 342 (1416)
Q Consensus 325 ~gs~iivTtR~~~v~~~~ 342 (1416)
.|-.+|+.|-....|..+
T Consensus 185 eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCCeEEEEechhHHHHHh
Confidence 465666667665555554
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.3 Score=56.95 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS 294 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 294 (1416)
...+++++|+.|+||||++..+.........-+.+.++.... .....+.+....+.++.......+..++...+.. ++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 457999999999999999998876321111123344443322 2233334444555554443333444444433333 34
Q ss_pred cccEEEEeccc
Q 000568 295 RKKFLLVLDDV 305 (1416)
Q Consensus 295 ~kr~LlVlDdv 305 (1416)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 45666765
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.063 Score=59.26 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCC
Q 000568 200 KEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDD 279 (1416)
Q Consensus 200 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~ 279 (1416)
..+++.+... -+-+.++|+.|+|||++++.......-. .| ...-++.+...+...++ ++++.-.......
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHH-HCCCTTECECTTE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCC
Confidence 4455555543 2566899999999999999988642211 11 13345555543333332 2222111000000
Q ss_pred CCHHHHHHHHHHHhccccEEEEeccccccC
Q 000568 280 SDLNLLQEELNKQLSRKKFLLVLDDVWNEN 309 (1416)
Q Consensus 280 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~ 309 (1416)
. + .--.+|+.++.+||+.-..
T Consensus 93 -~-------~-gP~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 93 -V-------Y-GPPGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp -E-------E-EEESSSEEEEEEETTT-S-
T ss_pred -C-------C-CCCCCcEEEEEecccCCCC
Confidence 0 0 0013678899999995543
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.2 Score=55.11 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=30.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN 257 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 257 (1416)
..+++.|.|.+|+|||++|.+++.... + .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-S-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h-CCCcEEEEEecC
Confidence 467999999999999999999866321 1 234678888764
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.036 Score=34.18 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=9.2
Q ss_pred ccEEecCCCCchhhchHhhc
Q 000568 630 LHTLLLEDCDRLKTLCADIG 649 (1416)
Q Consensus 630 L~~L~L~~~~~~~~lp~~i~ 649 (1416)
|++|||++| .++.+|.+|+
T Consensus 2 L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSS-EESEEGTTTT
T ss_pred ccEEECCCC-cCEeCChhhc
Confidence 455555554 3335554443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.37 Score=57.17 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=46.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR 295 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 295 (1416)
.+|++++|+.|+||||++.+++.....+..-..+..+.... .....+.++...+.++.......+..+....+. .+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hccC
Confidence 47999999999999999999987432222112344554432 123334444445554433222222222222222 2334
Q ss_pred ccEEEEecccc
Q 000568 296 KKFLLVLDDVW 306 (1416)
Q Consensus 296 kr~LlVlDdv~ 306 (1416)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 466777763
|
|
| >PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.18 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+.|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999874
|
The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.22 Score=57.27 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
-.+++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999875
|
|
| >PTZ00301 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.084 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.73 Score=47.68 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=36.2
Q ss_pred HHHHHhccccEEEEecccccc-ChhhHhhhcccccc-CCCCcEEEEEccchHHHHhhCCCCee
Q 000568 288 ELNKQLSRKKFLLVLDDVWNE-NYNDWVDMSRPLEA-GAPGSKIIVTTRNQEVVAIMGTAPAY 348 (1416)
Q Consensus 288 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~ 348 (1416)
.+.+.+--++=+.|||..++- +.+..+.+...+.. ...|+.+++.|-.+.++....+..++
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344444446679999998764 23333333332221 23477788888888888877654443
|
|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.38 Score=48.34 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEE---ecCCcCHHHHHHHHHHHhc-----CC-CCCCCC-------
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC---VSNDFDVIRLTKTILRCIT-----KQ-TIDDSD------- 281 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~il~~l~-----~~-~~~~~~------- 281 (1416)
..|-|++-.|.||||.|..++. +..++=..+..+. ..........+... .+. .. .....+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 5777888899999999977765 3333222233232 22122333343332 111 00 000111
Q ss_pred HHHHHHHHHHHhccccE-EEEecccccc---ChhhHhhhccccccCCCCcEEEEEccch
Q 000568 282 LNLLQEELNKQLSRKKF-LLVLDDVWNE---NYNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~kr~-LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
..+.....++.+...+| ++|||.+-.. ..-+.+.+...+.....+..||+|-|..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12233444555555554 9999998421 1123335555555555677999999985
|
Alternate name: corrinoid adenosyltransferase. |
| >PRK08972 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.3 Score=56.76 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC-HHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD-VIRLTKTILRCITKQ-------TIDDSDLN----- 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~----- 283 (1416)
...++|+|..|+|||||++.+.... ..+.++.+-+++... +.++..+++..-... ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4579999999999999999998632 224556666666543 344555544331111 01111111
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
.....+.+++ +++++|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1222344555 588999999999
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.2 Score=48.59 Aligned_cols=82 Identities=24% Similarity=0.305 Sum_probs=29.9
Q ss_pred hhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCC-CCCcceEEEccccCCCcCcccccCcCc
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP-CAKLTRLEISECERLEALPRGLRNLTC 1228 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~p~~l~~l~~ 1228 (1416)
.+..+++|+.+.+.++ +.......+.++++|+.+.+.+ .+..++...+. +++|+.+.+..+ +...-...+.++ +
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 3455555555555543 2222233444554555555532 33333333333 455555555433 221222234443 4
Q ss_pred cceeeeec
Q 000568 1229 LQHLTIGD 1236 (1416)
Q Consensus 1229 L~~L~ls~ 1236 (1416)
|+.+.+..
T Consensus 105 l~~i~~~~ 112 (129)
T PF13306_consen 105 LKEINIPS 112 (129)
T ss_dssp --EEE-TT
T ss_pred ceEEEECC
Confidence 55554443
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.3 Score=51.14 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
.+..+|.++||+|.||||..+.++...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 456788899999999999999998753
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.28 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999853
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.05 Score=50.52 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 000568 220 IPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~ 240 (1416)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998874
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.19 Score=48.72 Aligned_cols=104 Identities=23% Similarity=0.270 Sum_probs=47.3
Q ss_pred hhccCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCcccccCCCCC-CCCcceEEEccccCCCcCcccccCcCc
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP-CAKLTRLEISECERLEALPRGLRNLTC 1228 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~p~~l~~l~~ 1228 (1416)
.|..+++|+.+.+.. .+.......+..+++|+.+.+.+ .+..++...+. +++|+.+.+.+ .....-...+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc-ccccccccccccccc
Confidence 355666777777764 33333345567777788887753 35555544333 55677777754 222222335556777
Q ss_pred cceeeeecCCCCCCCCCCCCCCCCCcceeEec
Q 000568 1229 LQHLTIGDVLSPERDPEDEDRLPTNLHSLNID 1260 (1416)
Q Consensus 1229 L~~L~ls~n~~~~~~~~~~~~l~~~L~~L~l~ 1260 (1416)
|+.+++..+ +..+....+.+. +|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~--~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC--NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT---T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC--CceEEEEC
Confidence 777777554 344444444332 45555443
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.13 Score=49.18 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc
Q 000568 197 TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR 242 (1416)
Q Consensus 197 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 242 (1416)
++.+++.+.+...- ....+|.+.|.-|+||||+++.++....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45555555554321 1235899999999999999999998643
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.2 Score=56.15 Aligned_cols=83 Identities=24% Similarity=0.212 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQT-----IDDSDLNLLQEELN 290 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 290 (1416)
.-.++.|-|-+|||||||..++..+. ...- .+.+|+-.+... ..+--++.++... ....+.+.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~l--A~~~-~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARL--AKRG-KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHH--HhcC-cEEEEeCCcCHH---HHHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 45799999999999999999999853 3222 577776555432 2233344554322 13345566555555
Q ss_pred HHhccccEEEEeccccc
Q 000568 291 KQLSRKKFLLVLDDVWN 307 (1416)
Q Consensus 291 ~~l~~kr~LlVlDdv~~ 307 (1416)
+ .+.-++|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 4 5778999999854
|
|
| >PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.27 Score=52.37 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HhhccCChHHHHHHHHHHHHHhhhhhHHHHHH
Q 000568 33 QIQADLVKWKRMLVKIKAVLDDA-EEKQRTDQSVKMWLGDLHNLAFDVEDLLEEFQ 87 (1416)
Q Consensus 33 ~~~~~~~~l~~~l~~~~~~l~~a-~~~~~~~~~~~~wl~~~r~~ayd~ed~ld~~~ 87 (1416)
-++.+++-++.+++.+|.||+.. ++..........++.++-..||++|.++|.+.
T Consensus 318 flKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 318 FLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 45899999999999999999986 44333333488999999999999999999973
|
The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM. |
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.046 Score=51.10 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcccccccccC
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDHRVQDHFD 248 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 248 (1416)
|.|+|.+|+||||+|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 579999999999999999983 444553
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.064 Score=54.56 Aligned_cols=25 Identities=48% Similarity=0.477 Sum_probs=22.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
..+|+|-||-|+||||||+.+.+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4799999999999999999999854
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.37 Score=55.71 Aligned_cols=83 Identities=20% Similarity=0.155 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTI-----DDSDLNLLQEELN 290 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 290 (1416)
...++.|.|.+|+|||||+.+++.... ..-..++|++..+. ...+ +.-++.++.... ...+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 357999999999999999999986432 22245777766443 2222 222344443211 2234444444443
Q ss_pred HHhccccEEEEecccc
Q 000568 291 KQLSRKKFLLVLDDVW 306 (1416)
Q Consensus 291 ~~l~~kr~LlVlDdv~ 306 (1416)
+ .+.-+||+|.+.
T Consensus 156 ~---~~~~lVVIDSIq 168 (372)
T cd01121 156 E---LKPDLVIIDSIQ 168 (372)
T ss_pred h---cCCcEEEEcchH
Confidence 2 355678888883
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.54 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.45 Score=52.25 Aligned_cols=127 Identities=19% Similarity=0.170 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcC--C-
Q 000568 199 KKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK--Q- 275 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~- 275 (1416)
.+.+...+... +...-++|+|+.|.|||||.+.+..... .....+++.-.. ....+...++...... +
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE-eecchhHHHHHHHhcccccc
Confidence 44445555432 2357899999999999999999987432 222333332100 0000111222222211 1
Q ss_pred C----CCC-CCHHHHHHHHHHHh-ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccchHHHH
Q 000568 276 T----IDD-SDLNLLQEELNKQL-SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVA 340 (1416)
Q Consensus 276 ~----~~~-~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 340 (1416)
. .+. ....... -+...+ ...+=++++|.+-.. +.+..+...+ ..|..||+||-+..+..
T Consensus 169 ~~~~r~~v~~~~~k~~-~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAE-GMMMLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchHHH-HHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 0 000 0111111 122222 246779999998543 4455554444 24778999998766543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.26 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+.|.+.|.+|+||||+|++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46788999999999999999874
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.5 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
++++|.|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.32 Score=53.30 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=31.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF 259 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 259 (1416)
.-.++.|.|.+|+|||+||.++.... . ..-..++|++..+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCCH
Confidence 46799999999999999999887642 1 223567888876643
|
|
| >PRK09280 F0F1 ATP synthase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.38 Score=56.41 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCHH----
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDLN---- 283 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~---- 283 (1416)
.-+.++|+|..|+|||||+.++....... +=+.++++-+++.. .+.++.+++...=... ..+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35678999999999999999887643221 11356677666653 3455555555431111 01111111
Q ss_pred -HHHHHHHHHh---ccccEEEEeccc
Q 000568 284 -LLQEELNKQL---SRKKFLLVLDDV 305 (1416)
Q Consensus 284 -~~~~~l~~~l---~~kr~LlVlDdv 305 (1416)
...-.+.+++ +++++|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 2223455666 578999999999
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.85 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+..++.|.|.+|+|||||+..+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999874
|
|
| >PRK12597 F0F1 ATP synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.19 Score=59.06 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCH-----
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDL----- 282 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~----- 282 (1416)
+-+.++|+|.+|+|||||+.++...... .+-+.++++-+++.. .+.++..++...-... ..+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3467899999999999999988875432 255777777776653 3445555554321111 0111111
Q ss_pred HHHHHHHHHHh---ccccEEEEeccc
Q 000568 283 NLLQEELNKQL---SRKKFLLVLDDV 305 (1416)
Q Consensus 283 ~~~~~~l~~~l---~~kr~LlVlDdv 305 (1416)
......+.+++ +++++|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 12223455665 378999999999
|
|
| >PRK09519 recA DNA recombination protein RecA; Reviewed | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.29 Score=61.20 Aligned_cols=85 Identities=20% Similarity=0.113 Sum_probs=56.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQT-----IDDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 289 (1416)
...+++-|+|.+|+||||||.+++... ...-..++|++..+.++. ..+++++... ......++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 346899999999999999998876532 222355789988777663 2556665432 1234455666666
Q ss_pred HHHhcc-ccEEEEecccc
Q 000568 290 NKQLSR-KKFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~~-kr~LlVlDdv~ 306 (1416)
...++. +--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 665544 45689999984
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.85 Score=55.79 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=35.3
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++|+...+.++.+.+.... .....|.|.|.+|+|||++|+.++..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58899888888777664321 12345789999999999999999874
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.41 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|..|.|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.33 Score=48.96 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=60.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 297 (1416)
.+++|+|..|.|||||++.+..... .....+++........ ........+.-.. +-...+...-.+.+.+....
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKL--PLEELRRRIGYVP-QLSGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccC--CHHHHHhceEEEe-eCCHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999987432 2344444432211110 0001111111100 01122233334556666667
Q ss_pred EEEEecccccc-ChhhHhhhccccccC-CCCcEEEEEccchHHHHh
Q 000568 298 FLLVLDDVWNE-NYNDWVDMSRPLEAG-APGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 298 ~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~ 341 (1416)
=++++|+.... +......+...+... ..+..++++|.+......
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 88999988532 122223333333221 125678888877665554
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.37 Score=56.18 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
...+|.++|.+|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999888643
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.08 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999843
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.37 Score=56.22 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQ-------TIDDSDLNL---- 284 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~-------~~~~~~~~~---- 284 (1416)
...++|+|..|+|||||++.+..... . +..+.+...+ ...+.++..+.+..-+.. ..+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999998886432 1 2222232333 333444554444332111 111111111
Q ss_pred -HHHHHHHHh--ccccEEEEeccc
Q 000568 285 -LQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 285 -~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
....+.+++ +++++|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 222345555 578999999999
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.58 Score=46.76 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4689999999999999999874
|
The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. |
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.25 Score=56.70 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=37.7
Q ss_pred CCeeeeehhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 189 EAKVYGRETEKKEIVELLLRD--------DLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+..++|.+..++.+..++... ..........+.++|++|+|||++|+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345889999998888777431 0001112467899999999999999999874
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.19 Score=52.82 Aligned_cols=121 Identities=14% Similarity=0.147 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCH---HHHHHHHHHH-
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDL---NLLQEELNKQ- 292 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~---~~~~~~l~~~- 292 (1416)
.+++.|.|+.|.||||+.+.+....-. . ....+|.+.. ....+...+...++......... ..-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a--~~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-A--QIGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-H--HcCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 478999999999999999988643211 0 1111221111 00122222232222221101111 0001111222
Q ss_pred -hccccEEEEeccccccC-hhh----HhhhccccccCCCCcEEEEEccchHHHHhhCC
Q 000568 293 -LSRKKFLLVLDDVWNEN-YND----WVDMSRPLEAGAPGSKIIVTTRNQEVVAIMGT 344 (1416)
Q Consensus 293 -l~~kr~LlVlDdv~~~~-~~~----~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~ 344 (1416)
+..++-|+++|...... ..+ ...+...+.. .|+.+|++|-+.+++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 23567899999974321 112 1123333332 37899999999988876543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.62 Score=51.08 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=48.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS- 294 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~- 294 (1416)
..+++++|.+|+||||+++.+..... ..=..+.+++..... .....++...+.++.+.....+.+.+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~--~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 46999999999999999998876321 111234555543221 22223333333333332223455555544443322
Q ss_pred cccEEEEeccccc
Q 000568 295 RKKFLLVLDDVWN 307 (1416)
Q Consensus 295 ~kr~LlVlDdv~~ 307 (1416)
.+.=++++|..-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 2346788888744
|
|
| >PRK04040 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.089 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+|+|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
|
|
| >cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.5 Score=51.27 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHccccc--ccccCcEEEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCHH---
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRV--QDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDLN--- 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~--- 283 (1416)
-+.++|.|-.|+|||+|+..+.++... +++-+.++++-+++.. .+.++..++.+.=... ..+.....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 467899999999999999998875431 1234677888887764 3445555554431111 01111111
Q ss_pred --HHHHHHHHHhc---cccEEEEeccc
Q 000568 284 --LLQEELNKQLS---RKKFLLVLDDV 305 (1416)
Q Consensus 284 --~~~~~l~~~l~---~kr~LlVlDdv 305 (1416)
.....+.++++ ++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 12233555553 68999999999
|
These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit. |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.062 Score=56.37 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=50.9
Q ss_pred cCCcccEEeeccCCCcccccccccCCCCcceeeeccCCCc--ccccCCCCCCCCcceEEEccccCCC-cCcccccCcCcc
Q 000568 1153 NNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNL--VSFSEGGLPCAKLTRLEISECERLE-ALPRGLRNLTCL 1229 (1416)
Q Consensus 1153 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l--~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~l~~l~~L 1229 (1416)
.+..|+.|.+.++.++.. ..+-.+++|+.|.++.|... ..++.-.-.+|+|++|++++|++.. +--..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 344455555555554432 23455677777777755322 2222112226888888888888752 111245567788
Q ss_pred ceeeeecCCCCCC
Q 000568 1230 QHLTIGDVLSPER 1242 (1416)
Q Consensus 1230 ~~L~ls~n~~~~~ 1242 (1416)
..|++.+|..++.
T Consensus 119 ~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 119 KSLDLFNCSVTNL 131 (260)
T ss_pred hhhhcccCCcccc
Confidence 8888888866553
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.18 Score=47.78 Aligned_cols=70 Identities=19% Similarity=0.124 Sum_probs=39.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 296 (1416)
.+-|.|.|-+|+||||+|.+++.... .-|+++++-.....+....=++. ....-+.+.+.+.+..++.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcC
Confidence 35688999999999999999986321 34566655322222221111110 112345566666666665543
|
|
| >PTZ00185 ATPase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.62 Score=54.61 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=53.1
Q ss_pred CcEEEEEEcCCCCcHHHHH-HHHHccccc-----ccccCcEEEEEecCCcCHHHHHHHHHHHhcCCC--------CCCCC
Q 000568 216 GFSVIPIIGMGGLGKTTLA-QLVYNDHRV-----QDHFDLKAWTCVSNDFDVIRLTKTILRCITKQT--------IDDSD 281 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------~~~~~ 281 (1416)
+-+.++|.|..|+|||+|| -.+.+...+ .++-+.++++-+++..+...-+.+.+++-+.-. .+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 555654322 123456778888877654443444444443110 11111
Q ss_pred HHH-----HHHHHHHHh--ccccEEEEecccc
Q 000568 282 LNL-----LQEELNKQL--SRKKFLLVLDDVW 306 (1416)
Q Consensus 282 ~~~-----~~~~l~~~l--~~kr~LlVlDdv~ 306 (1416)
..+ ....+.+++ +++.+|+|+||+-
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111 122344444 4789999999993
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.096 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..++|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999863
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.48 Score=49.80 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccccccccc--------CcEEEEEecCC
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHF--------DLKAWTCVSND 258 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 258 (1416)
.++.|+|++|+||||++.++.........| ..+.|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999999988754332222 25777776665
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.1 Score=47.76 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
-.+++|.|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.48 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999998874
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.5 Score=50.52 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=32.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 267 (1416)
...++.|.|.+|+|||++|.++....- + .-..+++++.... ..++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHH
Confidence 356899999999999999999876432 2 2234667766554 3344444
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.57 Score=50.84 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=29.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND 258 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 258 (1416)
...++.|.|.+|+||||+|.++.... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 46899999999999999999876532 1 12346788876443
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.53 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998744
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.16 Score=56.41 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=79.5
Q ss_pred CCeeeeehhHHHHHHHHHhcCCCC-----------CCCCcEEEEEEcCCCCcHHHHHHHHHccccccc--cc---CcEEE
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLR-----------NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD--HF---DLKAW 252 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f---~~~~w 252 (1416)
.-+..|-..+...|.+.+...... .-....+++|+|..|+||||+.+++........ .| .+.+-
T Consensus 370 ~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~ 449 (593)
T COG2401 370 ELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVE 449 (593)
T ss_pred eeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCcee
Confidence 334556667777777766322110 012345899999999999999999876432111 11 11111
Q ss_pred EE---------ecC--CcCHHHHHHHH-------------HHHhcCCC--------CCCCCHHHHHHHHHHHhccccEEE
Q 000568 253 TC---------VSN--DFDVIRLTKTI-------------LRCITKQT--------IDDSDLNLLQEELNKQLSRKKFLL 300 (1416)
Q Consensus 253 v~---------~~~--~~~~~~~~~~i-------------l~~l~~~~--------~~~~~~~~~~~~l~~~l~~kr~Ll 300 (1416)
+. -.- .++...++..+ +...+..+ .+-.+...-...|.+.+.++.-++
T Consensus 450 vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~ 529 (593)
T COG2401 450 VPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVL 529 (593)
T ss_pred ccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence 11 011 11211233222 22222211 011222223345777778887888
Q ss_pred EeccccccChhhHhh--hcccccc--CCCCcEEEEEccchHHHHhhCCCC
Q 000568 301 VLDDVWNENYNDWVD--MSRPLEA--GAPGSKIIVTTRNQEVVAIMGTAP 346 (1416)
Q Consensus 301 VlDdv~~~~~~~~~~--~~~~l~~--~~~gs~iivTtR~~~v~~~~~~~~ 346 (1416)
+.|..... .+.... +...+.. ...|+-+++.|+.+++.+.+....
T Consensus 530 ~iDEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 530 LIDEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred Ehhhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 98987432 111111 1122221 225778888888888888775543
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.29 Score=54.10 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=32.7
Q ss_pred CeeeeehhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 190 AKVYGRETEKKEIVELLLRDDL------RNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++.|.++.++-|.+...-.-- .-...-+-|..+|++|.|||-||++|+..
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 3466666666555554321100 01123467889999999999999999983
|
|
| >PRK12678 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.22 Score=58.75 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=48.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEE-EEEecCCcC-HHHHHHHHHHHhcCCCCCCCC-----HHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKA-WTCVSNDFD-VIRLTKTILRCITKQTIDDSD-----LNLLQEE 288 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~-----~~~~~~~ 288 (1416)
.-....|+|++|+|||||++.+++.... .+-++.+ .+-+.+... +.++.+.+-.++.....+... ...+.-.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999884321 2223333 344555432 222222221111111112111 1222233
Q ss_pred HHHHh--ccccEEEEeccc
Q 000568 289 LNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 289 l~~~l--~~kr~LlVlDdv 305 (1416)
+.+++ .++.+||++|++
T Consensus 494 ~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHcCCCEEEEEeCc
Confidence 44555 588999999999
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.09 Score=53.51 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.|.++||+|+||||+|+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.87 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|+.|+|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.2 Score=54.20 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=50.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC---------------CCC--
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ---------------TID-- 278 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~---------------~~~-- 278 (1416)
...++.|.|.+|+|||++|.++.... .+..=..++|++..+.. ..+.+.+ +.++-. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~~--~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEPP--EELIENM-KSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-H--HHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCCH--HHHHHHH-HHcCCcHHHHhhcCCEEEEecccccc
Confidence 45799999999999999999877532 11112457788876543 3333332 233211 000
Q ss_pred ---CCCHHHHHHHHHHHhcc-ccEEEEeccc
Q 000568 279 ---DSDLNLLQEELNKQLSR-KKFLLVLDDV 305 (1416)
Q Consensus 279 ---~~~~~~~~~~l~~~l~~-kr~LlVlDdv 305 (1416)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34566666666666553 3467888876
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.1 Score=47.49 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=92.40 E-value=1.1 Score=43.71 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHhcCCCC------CCCCHHHHHHHHHHHhccccEEEEeccc----cccChhhHhhhccccccCCCCcEE
Q 000568 260 DVIRLTKTILRCITKQTI------DDSDLNLLQEELNKQLSRKKFLLVLDDV----WNENYNDWVDMSRPLEAGAPGSKI 329 (1416)
Q Consensus 260 ~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~~~~~l~~~~~gs~i 329 (1416)
+.....+..+++++.... +-...++..-.+.+.+...+-+++-|.- +...-+...++...+. ...|...
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hhcCceE
Confidence 455667777877765421 2234455566788888888888888854 3222223333333332 3468888
Q ss_pred EEEccchHHHHhhCC
Q 000568 330 IVTTRNQEVVAIMGT 344 (1416)
Q Consensus 330 ivTtR~~~v~~~~~~ 344 (1416)
+..|-++.+|..|..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 999999999988753
|
|
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.34 Score=51.61 Aligned_cols=31 Identities=35% Similarity=0.309 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND 258 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 258 (1416)
-.+.|+|.+|+||||+|..+ +..+++.....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 46789999999999999665 34556655444
|
|
| >TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.35 Score=54.67 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHccc
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
+.+.|++|+||||+++.+....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998643
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity. |
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.2 Score=57.57 Aligned_cols=102 Identities=23% Similarity=0.307 Sum_probs=56.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccc----ccccCcEEEEEecCCcCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRV----QDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNK 291 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 291 (1416)
..+=+.|||..|.|||.|.-.+|+...+ +-||. ....++-+.+..-...... +..+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~----l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDP----LPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCcc----HHHHHH
Confidence 4678999999999999999999986433 23442 2333333333221111222 333445
Q ss_pred HhccccEEEEeccccccChhhHhhhcccccc-CCCCcEEEEEccch
Q 000568 292 QLSRKKFLLVLDDVWNENYNDWVDMSRPLEA-GAPGSKIIVTTRNQ 336 (1416)
Q Consensus 292 ~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~iivTtR~~ 336 (1416)
.+.++..||.||.+.-.+..+---+...|.. ...|. |||+|-+.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 5566677999998855443332222222222 23454 45555443
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.21 Score=46.67 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=32.9
Q ss_pred eeeehhHHHHHHHHHhcCCC-CCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 192 VYGRETEKKEIVELLLRDDL-RNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 192 ~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
++|..-..+.+++.+.+--. ....+.-|++.+|.+|+|||.+|+.+++.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45555444444444432111 13456789999999999999999888875
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >PRK15453 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.57 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
+..+|+|.|.+|+||||+|+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999885
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.22 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999754
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.21 Score=52.94 Aligned_cols=60 Identities=27% Similarity=0.269 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH
Q 000568 198 EKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261 (1416)
Q Consensus 198 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 261 (1416)
+..++++.+... .++..+|+|.|+||+|||||..++....+.+++=-.++=|+-|..++-
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 445566666543 235689999999999999999998875443322223344444555543
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.79 Score=51.30 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=34.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTI 268 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 268 (1416)
-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 4588999999999999999998742 33567788777654 334444443
|
These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.43 Score=55.63 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=49.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCC-------CCCCCCH-----H
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQ-------TIDDSDL-----N 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~-------~~~~~~~-----~ 283 (1416)
...++|+|..|+|||||++.++.... -+.++...+... .++.++..+........ ..+.... .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 46889999999999999999986322 233333444333 34555555555532211 1111111 1
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
.....+.+++ ++|++|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1223344444 588999999999
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.98 Score=54.52 Aligned_cols=184 Identities=16% Similarity=0.184 Sum_probs=91.1
Q ss_pred ccCCeeeeehhHHHHH---HHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC
Q 000568 187 VNEAKVYGRETEKKEI---VELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD 260 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l---~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 260 (1416)
+.-.++.|.|+.++++ ++.|.+... -+..-++-+..+|++|.|||.||++++....+- | .+.|...
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~- 218 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD- 218 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh-
Confidence 3445688988666555 455543321 012336678899999999999999999854332 2 1111110
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEecccccc----------ChhhHhhhccc----cccCC--
Q 000568 261 VIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE----------NYNDWVDMSRP----LEAGA-- 324 (1416)
Q Consensus 261 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~~~~~----l~~~~-- 324 (1416)
. -++.-. .......+.+.+..+.-++.|++|.++.. ..++++..+.. ...+.
T Consensus 219 F----VemfVG--------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 219 F----VEMFVG--------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred h----hhhhcC--------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 0 000000 01112223344444556789999988542 11233332222 22222
Q ss_pred CCcEEEEEccchHHHHh--hC---CCCeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHH
Q 000568 325 PGSKIIVTTRNQEVVAI--MG---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLA 395 (1416)
Q Consensus 325 ~gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 395 (1416)
.|-.|+..|-.++|... ++ ..+.+.++..+-..-.++++-++-...- ...-.+.. |++.+-|.-.|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vdl~~----iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVDLKK----IARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCCHHH----HhhhCCCcccc
Confidence 23344444444445422 12 2345666666656666777755532221 11222333 77777776533
|
|
| >PRK08927 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.22 Score=58.13 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC-HHHHHHHHHHHhcCC-------CCCCCCH-----
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD-VIRLTKTILRCITKQ-------TIDDSDL----- 282 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~----- 282 (1416)
....++|+|..|+|||||++.++.... -+.++++-+++... +.+...+.+..-+.. ..+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999987432 23455565655443 334444444332111 0111111
Q ss_pred HHHHHHHHHHh--ccccEEEEeccc
Q 000568 283 NLLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 283 ~~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
......+.+++ +++++|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 11222344555 588999999999
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.79 Score=51.56 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=48.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecC-CcCHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQ-------TIDDSDLN----- 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~-------~~~~~~~~----- 283 (1416)
...++|+|..|+|||||++.+..... -+..+..-+.. ..++.+.....+..-... ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 46789999999999999999887432 12333444433 334555555554432211 11111111
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
...-.+.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1222234444 588999999998
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.82 Score=51.71 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=33.1
Q ss_pred eeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000568 347 AYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 347 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 396 (1416)
++++++++.+|+..++...+-..--.. ...-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999887763222111 0122445666777789998654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.20 E-value=2 Score=48.40 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=19.8
Q ss_pred CcEEEEEEcCCCCcHH-HHHHHHHc
Q 000568 216 GFSVIPIIGMGGLGKT-TLAQLVYN 239 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKT-tLa~~v~~ 239 (1416)
....+.++|..|+||| |||+++..
T Consensus 178 P~~r~vL~Ge~GtGKSiaL~qa~h~ 202 (461)
T KOG3928|consen 178 PVKRFVLDGEPGTGKSIALAQAVHY 202 (461)
T ss_pred cceEEEEeCCCCCchhhHHHHHHHH
Confidence 3567789999999999 78877765
|
|
| >cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.097 Score=53.80 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
|
This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. |
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.1 Score=60.62 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
..+-|.++|++|.|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35678899999999999999999853
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.1 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999753
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.4 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.016 Score=58.70 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCCccccceeeccCCCccccCccccccCcccEEecCCCCchhhchHhhcccccCceeecCCccccccccCCcccccCCcc
Q 000568 601 LQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQT 680 (1416)
Q Consensus 601 l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 680 (1416)
+-......+||++.|++..+-..|+.++.|..||++.| .+..+|.+++.+..++++++..|. ....|..++++++++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence 34445556788888888888888888888888888884 778888888888888888887776 8888888888888887
Q ss_pred c
Q 000568 681 L 681 (1416)
Q Consensus 681 L 681 (1416)
+
T Consensus 116 ~ 116 (326)
T KOG0473|consen 116 N 116 (326)
T ss_pred h
Confidence 7
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.4 Score=48.63 Aligned_cols=130 Identities=9% Similarity=0.002 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccc-----------ccCcEEEEE-ecCCcCHHHHHH
Q 000568 199 KKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD-----------HFDLKAWTC-VSNDFDVIRLTK 266 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------~f~~~~wv~-~~~~~~~~~~~~ 266 (1416)
-+++...+..+ .-.....++|+.|+||+++|..++...-... ...-..|+. ....
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-------- 72 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-------- 72 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--------
Confidence 34555555432 2245777999999999999988876432110 011111111 1000
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh-----ccccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccc-hHHHH
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVA 340 (1416)
Q Consensus 267 ~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~ 340 (1416)
..-.++++. .+.+.+ .+++=++|+|+++.-+...++.++..+..-..++.+|++|.+ ..+..
T Consensus 73 -----------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 73 -----------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred -----------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 001223322 222222 355568899999887778888888888765567776666665 44433
Q ss_pred hh-CCCCeeeCCCC
Q 000568 341 IM-GTAPAYQLKRL 353 (1416)
Q Consensus 341 ~~-~~~~~~~l~~L 353 (1416)
.. .-...+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 32 22244566554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.019 Score=59.91 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=62.9
Q ss_pred hhcccCCCccccceeeccCCCccccCccccccCcccEEecCCCCchhhchH--hhcccccCceeecCCccccccccCC--
Q 000568 596 HQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCA--DIGNLIKLHHLKNSNTISLQEMPLR-- 671 (1416)
Q Consensus 596 ~~~~~l~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~-- 671 (1416)
.++.-+.+++.|++|.||-|.|++|-. +..+++|+.|+|+.| .+..+-+ -+.+|++|+.|-|..|.....-+..
T Consensus 32 ~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 32 DDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred cHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 444456778899999999999998854 888999999999986 4444432 3678888888888877644444433
Q ss_pred ---cccccCCcccCceEE
Q 000568 672 ---FGKLTCLQTLCNFVV 686 (1416)
Q Consensus 672 ---i~~L~~L~~L~~~~~ 686 (1416)
+.-|+||+.|++..+
T Consensus 110 ~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred HHHHHHcccchhccCccc
Confidence 556677777754443
|
|
| >TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.61 Score=54.62 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=54.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcC-HHHHHHHHHHHhcCC-------CCCCCCHH----
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD-VIRLTKTILRCITKQ-------TIDDSDLN---- 283 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~---- 283 (1416)
+-+.++|.|.+|+|||+|+.++..... +.+-+.++|+-+++... +.++.+++...=... ..+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 346789999999999999999887532 22346778887776543 444555544321111 01111111
Q ss_pred -HHHHHHHHHhc---cccEEEEeccc
Q 000568 284 -LLQEELNKQLS---RKKFLLVLDDV 305 (1416)
Q Consensus 284 -~~~~~l~~~l~---~kr~LlVlDdv 305 (1416)
.....+.++++ ++++|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 22234556664 58999999999
|
A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase. |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.16 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999874
|
|
| >COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.15 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988776
|
|
| >cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.36 Score=52.34 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcccccccccCcE-EEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCHHH--
Q 000568 217 FSVIPIIGMGGLGKTTLA-QLVYNDHRVQDHFDLK-AWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDLNL-- 284 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~-- 284 (1416)
-+.++|+|..|+|||+|| ..+.+. .+-+.+ +++-+.+.. .+.++.+++.+.=... ..+......
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 467899999999999996 555542 122344 556666653 3445555554321111 111111111
Q ss_pred ---HHHHHHHHh--ccccEEEEeccc
Q 000568 285 ---LQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 285 ---~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
..-.+.+++ +++.+|+|+||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112233433 478999999999
|
The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.1 Score=55.07 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|+|.|..|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.89 E-value=4.7 Score=44.70 Aligned_cols=69 Identities=12% Similarity=0.219 Sum_probs=46.2
Q ss_pred cccEEEEeccccccChhhHhhhccccccCCCCcEEEEEccch-HHHHhhC-CCCeeeCCCCChhhHHHHHHH
Q 000568 295 RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIMG-TAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 295 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~ 364 (1416)
+++=++|+||++......++.+...+..-..++.+|++|.+. .+..... ....+.+.. +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 566799999998887788888888887665667777766654 3433322 224567766 56666666653
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.11 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
||.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >PLN02348 phosphoribulokinase | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.52 Score=53.82 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
....+|+|.|.+|+||||+|+.+...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.99 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.13 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+++|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.21 Score=64.90 Aligned_cols=184 Identities=14% Similarity=0.106 Sum_probs=90.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccc--ccccccCcEEEEEecCCcC----HH--HHHHHHHHHhcCCCCCCCCHHHHHH
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH--RVQDHFDLKAWTCVSNDFD----VI--RLTKTILRCITKQTIDDSDLNLLQE 287 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~~~----~~--~~~~~il~~l~~~~~~~~~~~~~~~ 287 (1416)
...-+.|+|.+|.||||+.+.++-.. +....=+..+++.+..... .. .+..-+...+... ....+...
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~----~~~~~~~~ 296 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ----GIAKQLIE 296 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc----CCcchhhH
Confidence 34578999999999999999887532 1111123445544331110 11 1222222222211 11222223
Q ss_pred HHHHHhccccEEEEeccccccChhhH----hhhccccccCCCCcEEEEEccchHHHHhhCCCCeeeCCCCChhhHHHHHH
Q 000568 288 ELNKQLSRKKFLLVLDDVWNENYNDW----VDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFT 363 (1416)
Q Consensus 288 ~l~~~l~~kr~LlVlDdv~~~~~~~~----~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 363 (1416)
...++++..++++.+|.++......- ..+.. +...-+.++||+|+|....-....+...+++..+.++.-.....
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~-f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINK-FLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHH-HhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 33678889999999999876422111 11111 22233578999999875443333333445555555554332222
Q ss_pred --------HhhcCCCCCC---CChhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 000568 364 --------QHSLDSRDFS---SNKSLEEIGKKIVIKCNGLPLAAKTLGGLLR 404 (1416)
Q Consensus 364 --------~~~~~~~~~~---~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 404 (1416)
...++..... ....+..-..+-.+.....|+++.+.+..-.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 1112211100 0001111112233444888999998885544
|
|
| >PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots | Back alignment and domain information |
|---|
Probab=91.79 E-value=4.5 Score=39.65 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHhhhhhHH
Q 000568 5 GEAILKACIELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQRT-DQSVKMWLGDLHNLAFDVEDLL 83 (1416)
Q Consensus 5 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~-~~~~~~wl~~~r~~ayd~ed~l 83 (1416)
|+-+++|+++.+++.+...+..........+.-+++|...++.|.-++++.+.-... +..-+.-++++.+..-++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 444444445555555544444445555667889999999999999999987764322 3333667888999999999999
Q ss_pred HHH
Q 000568 84 EEF 86 (1416)
Q Consensus 84 d~~ 86 (1416)
+.|
T Consensus 83 ~k~ 85 (147)
T PF05659_consen 83 EKC 85 (147)
T ss_pred HHh
Confidence 987
|
Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif []. |
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.6 Score=59.37 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=70.3
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccc-cccccCcEEEEEecCCcCHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR-VQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
+.++|....+.++.+....-.. . ..-|.|+|..|+||+++|+.+++... .... .+.|++..-. ...+..++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~---~-~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~p---fv~vnc~~~~-~~~~~~el 396 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK---S-SFPVLLCGEEGVGKALLAQAIHNESERAAGP---YIAVNCQLYP-DEALAEEF 396 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC---c-CCCEEEECCCCcCHHHHHHHHHHhCCccCCC---eEEEECCCCC-hHHHHHHh
Confidence 3578998888888777654321 1 23367999999999999999987421 1222 3445554432 12222333
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEccc
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTTRN 335 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR~ 335 (1416)
+......... ... ..+. ....=.|+||+|.+-.......+...+..+. ...|||.||..
T Consensus 397 fg~~~~~~~~-~~~----g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSEN-GRL----SKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccC-CCC----Ccee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 3222110000 000 0000 1123469999998776666666665553321 13467777664
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.2 Score=50.76 Aligned_cols=77 Identities=19% Similarity=0.165 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEe-cCCcCHHHHHHHHHHHhcC
Q 000568 199 KKEIVELLLRDDLR---NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCV-SNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~ 274 (1416)
.++|++.|...... ....+.||-.+|.-|.||||.|-++++..+- .. ..+.-|.+ -..+...+.++.+.++++.
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~-~kvllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KG-KKVLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH-cC-CceEEEecccCChHHHHHHHHHHHHcCC
Confidence 45666666532211 1245789999999999999999988874332 11 22333322 2234556777888888876
Q ss_pred CCC
Q 000568 275 QTI 277 (1416)
Q Consensus 275 ~~~ 277 (1416)
+..
T Consensus 157 ~~f 159 (451)
T COG0541 157 PFF 159 (451)
T ss_pred cee
Confidence 543
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.63 Score=54.41 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQ-------TIDDSDLNL--- 284 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~-------~~~~~~~~~--- 284 (1416)
....++|+|..|+|||||++.+.... +.+..+++.+++. ..+.+.+.+....=... ..+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34688999999999999999888632 2344555555543 33434444443210000 011111111
Q ss_pred --HHHHHHHHh--ccccEEEEeccc
Q 000568 285 --LQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 285 --~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
....+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122344555 478999999999
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.14 Score=50.33 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 000568 219 VIPIIGMGGLGKTTLAQLVY 238 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~ 238 (1416)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.4 Score=47.80 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|+.|.|||||.+.+..-
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.14 Score=52.90 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.44 Score=58.45 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=69.5
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH-HH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK-TI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~-~i 268 (1416)
..++|....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++.... + .-...+.++++.-.+ ..+. .+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~~pfv~inca~~~~--~~~e~el 275 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP-R-GKKPFLALNCASIPD--DVVESEL 275 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeccccCCH--HHHHHHh
Confidence 3589998888888777653221 123477999999999999999875321 1 112234555555331 2222 12
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccChhhHhhhccccccCC-----------CCcEEEEEccch
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGA-----------PGSKIIVTTRNQ 336 (1416)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR~~ 336 (1416)
.....+....... .....+. ....=.|+||+|+.-.......+...+..+. ...|||.||...
T Consensus 276 FG~~~~~~~~~~~--~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 276 FGHAPGAYPNALE--GKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred cCCCCCCcCCccc--CCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 1111000000000 0000011 1123457899998766555555555443321 134788877654
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.29 Score=41.86 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
.+++.|.|++|.|||+++.....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36788899999999955544443
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.7 Score=49.82 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 268 (1416)
..++.|.|.+|+||||+|.+++.... +.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL-QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 46999999999999999877665321 122 3456666433 344555554
|
|
| >TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.45 Score=55.37 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=55.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccccccc--ccC---------cEEEEEecCCcCHHHHHHHHHHHhc-CC-------C
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQD--HFD---------LKAWTCVSNDFDVIRLTKTILRCIT-KQ-------T 276 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~il~~l~-~~-------~ 276 (1416)
.-+.++|.|-.|+|||||+.++.+...... ..| .++++-+++.....+.+.+.+..-+ .. .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 346789999999999999999987543100 011 4566677776555565555555443 11 0
Q ss_pred CCCCCHH-----HHHHHHHHHhc---cccEEEEeccc
Q 000568 277 IDDSDLN-----LLQEELNKQLS---RKKFLLVLDDV 305 (1416)
Q Consensus 277 ~~~~~~~-----~~~~~l~~~l~---~kr~LlVlDdv 305 (1416)
.+..... .....+.++++ ++++|+++||+
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 1111111 12233556665 58999999999
|
This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. |
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.3 Score=53.44 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=39.7
Q ss_pred CCeeeeehhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHccccccccc
Q 000568 189 EAKVYGRETEKKE---IVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF 247 (1416)
Q Consensus 189 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f 247 (1416)
...+||.....+. ++++.... .-..+.|.|+|++|.|||+||..+.+..-..-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~g----k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQG----KMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhC----cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 4578998766554 56666543 2346889999999999999999998854434344
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.3 Score=53.88 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=33.9
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.++|....++++...+..-. ..... +.|.|..|+||+++|+.++..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a---~~~~~-vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIA---PSDIT-VLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred ceeecCHHHHHHHHHHHHHh---CCCCC-EEEECCCCcCHHHHHHHHHHh
Confidence 47888888888777765321 12233 459999999999999999863
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.56 Score=47.88 Aligned_cols=118 Identities=19% Similarity=0.111 Sum_probs=62.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC---cCHHHHHHHHH--HH--hcCC-CCCCCC-------
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND---FDVIRLTKTIL--RC--ITKQ-TIDDSD------- 281 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il--~~--l~~~-~~~~~~------- 281 (1416)
...|-|+|..|-||||.|..+.. +..++=..+..+.+-+. ......++.+- .- .+.. .....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 36788999999999999977765 33333223333433332 23333333320 00 0110 001111
Q ss_pred HHHHHHHHHHHhcccc-EEEEecccccc---ChhhHhhhccccccCCCCcEEEEEccch
Q 000568 282 LNLLQEELNKQLSRKK-FLLVLDDVWNE---NYNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 282 ~~~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
........++.+...+ =++|||.+-.. ..-..+.+...+.....+..||+|=|..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122334455554544 49999998432 1223445555555555677999999975
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.27 Score=60.79 Aligned_cols=75 Identities=17% Similarity=0.086 Sum_probs=55.0
Q ss_pred CeeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHH
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 269 (1416)
..++|.+..++.+...+... +.+.++|.+|+||||+|+.+.... ...+++..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 45889998888888776432 368899999999999999998742 2334677788665 3346677777777
Q ss_pred HHhcC
Q 000568 270 RCITK 274 (1416)
Q Consensus 270 ~~l~~ 274 (1416)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 76654
|
|
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.58 Score=54.63 Aligned_cols=85 Identities=11% Similarity=0.168 Sum_probs=48.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC-cCHHHHHHHHHHHhcCCC-------CCCCCH-----H
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQT-------IDDSDL-----N 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~-------~~~~~~-----~ 283 (1416)
...++|+|..|+|||||.+.+.... ..+..+++-+++. ..+.+.+.+......... .+.... .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998642 1233344334332 233444444433322211 111111 1
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
...-.+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1223345555 488999999999
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.53 Score=55.21 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ-------TIDDSDLN----- 283 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-------~~~~~~~~----- 283 (1416)
+-..++|.|..|+|||||++.+....... ..+++..-.+...+.++.+.+...-... ..+.....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 34689999999999999999998643221 1233333333344555555554331111 01111111
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
...-.+.+++ +++++|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222344555 478999999999
|
|
| >cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.13 Score=53.07 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.3 Score=47.64 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|.|+.|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.15 Score=52.54 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
|
Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. |
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.21 Score=55.37 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=35.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCC
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND 258 (1416)
Q Consensus 215 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 258 (1416)
+..+++.|+|.+|+|||++|.++... ...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC
Confidence 45689999999999999999999873 4445788999988775
|
|
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.58 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 000568 220 IPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 220 i~I~G~gGiGKTtLa~~v~~~ 240 (1416)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999874
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.19 Score=63.99 Aligned_cols=24 Identities=25% Similarity=0.090 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.+++.|+|+.|.||||+.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 479999999999999999998753
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.26 Score=50.95 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCH
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV 261 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 261 (1416)
.|+|.|-||+||||+|..+......++.|+ +.-|+...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 689999999999999988554322222232 444555555543
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.36 E-value=2.8 Score=50.48 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=90.3
Q ss_pred eeeeehhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDL-------RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 263 (1416)
++=|..+.++.+.+.+.-+.. .+-....-|.++|++|.|||-||-+++.... .-+++|-.+ +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----H
Confidence 455666666666666543211 0112234578999999999999999987432 234666543 2
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccccEEEEeccccccC-----------hhhHhhhcccccc--CCCCcEEE
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN-----------YNDWVDMSRPLEA--GAPGSKII 330 (1416)
Q Consensus 264 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~~~~~l~~--~~~gs~ii 330 (1416)
++.. .++. +.+.+.+.+.+.-.-|++.+.+|..++.. ....+.+...+.. +-.|.-|+
T Consensus 737 lL~K---yIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 737 LLSK---YIGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHH---Hhcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEE
Confidence 2221 2221 22333344444445789999999986521 1123334333322 33566666
Q ss_pred E-EccchHHHHh-hCCC---CeeeCCCCChhhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhcCCChH
Q 000568 331 V-TTRNQEVVAI-MGTA---PAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 331 v-TtR~~~v~~~-~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 394 (1416)
. |||-.-+... ++.. +.+.=+.-++.+-.++|...+-.- ......++ +.++.+.+|.--
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~-~~~~~vdl----~~~a~~T~g~tg 871 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL-LKDTDVDL----ECLAQKTDGFTG 871 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc-CCccccch----HHHhhhcCCCch
Confidence 5 5554322222 1222 223334445556667776554211 11112223 336677776543
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.5 Score=47.22 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
-.+++|+|..|.|||||++.+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.21 Score=49.10 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHccc
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
+..||...|.+|.||||+|.+++...
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998743
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=91.27 E-value=1.1 Score=46.67 Aligned_cols=21 Identities=33% Similarity=0.207 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
|
|
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.33 Score=51.95 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
.|.|.|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998863
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.4 Score=48.43 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=91.21 E-value=2.6 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|.|+.|.|||||++.+..-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999999864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.64 Score=48.33 Aligned_cols=49 Identities=24% Similarity=0.182 Sum_probs=33.3
Q ss_pred eeeeehhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHHc
Q 000568 191 KVYGRETEKKEIVELLLRDDLR-------NDGGFSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 239 (1416)
++=|=.++++++.+...-.-.. +-+..+-|..+|++|.|||-+|++|++
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 3445566677776654322110 123456788999999999999999998
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.79 Score=53.56 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=47.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCc-CHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF-DVIRLTKTILRCITKQ-------TIDDSDLN----- 283 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 283 (1416)
...++|+|..|+|||||++.+..... -+..+...+.+.. .+.++.......=... ..+.....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 46789999999999999998886322 1334444454433 2334444433321110 11111111
Q ss_pred HHHHHHHHHh--ccccEEEEeccc
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~kr~LlVlDdv 305 (1416)
.....+.+++ +++++|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1222344444 588999999999
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.31 Score=54.62 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=33.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.+++.+.|.||+||||+|.+.+- ........+.-|+.....+...++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47999999999999999988654 2333334466676666666555544
|
|
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.14 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
+|.|.|.+|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.16 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
++++|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999873
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.44 Score=54.84 Aligned_cols=63 Identities=22% Similarity=0.113 Sum_probs=45.2
Q ss_pred eeeeehhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHcccccccccCcEEEEEecCCcCHHHHHH
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 266 (1416)
.++|+++....+...+... +-+.+.|.+|+|||+||+.++... . -..++|.+.......++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l--~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARAL--G---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHh--C---CCeEEEecCCCCCHHHhcC
Confidence 4889888888877777654 357899999999999999999743 2 2345566666655555443
|
|
| >TIGR00041 DTMP_kinase thymidylate kinase | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.78 Score=48.32 Aligned_cols=24 Identities=42% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHccc
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~gGiGKTtLa~~v~~~~ 241 (1416)
..|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998753
|
Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.8 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcc
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~gGiGKTtLa~~v~~~ 240 (1416)
..+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 416 bits (1070), Expect = e-131
Identities = 104/640 (16%), Positives = 204/640 (31%), Gaps = 96/640 (15%)
Query: 54 DAEEKQRTDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSS 113
DA+ + Q + D+ +++ ++ F ++ +
Sbjct: 2 DAKARNCLLQHREALEKDI-----KTSYIMDHMISDGFLT-----------ISEEEKVRN 45
Query: 114 RRSTTTKFRKLIPTCCTTFTLDSIKFEYVMI-SKIKEINDRFQEIVTQKDLLDLKESSAG 172
+ + LI + F ++ K++ + + K+S +G
Sbjct: 46 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSG 105
Query: 173 GSKKAMQRLPTTSLVNEAKVY-GRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKT 231
+ L + V+ R+ I + L + G + I GM G GK+
Sbjct: 106 ITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKS 161
Query: 232 TLAQLVYNDHRVQDHF--DLKAWTCVSNDFDVIRLTKT--ILRCITK----QTIDDSDLN 283
LA DH + + W V L K + + + ++
Sbjct: 162 VLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIE 221
Query: 284 LLQEELNKQLSRK--KFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEVVAI 341
++ L + RK + LL+LDDVW+ L+A +I++TTR++ V
Sbjct: 222 EAKDRLRILMLRKHPRSLLILDDVWDSWV---------LKAFDSQCQILLTTRDKSVTDS 272
Query: 342 MGTAPA--YQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399
+ L + L + + L E I+ +C G PL +
Sbjct: 273 VMGPKYVVPVESSLGKEKGLEILSLFV-----NMKKADLPEQAHSIIKECKGSPLVVSLI 327
Query: 400 GGLLRGK-HGPSDWEDVLNSNIWDLPE-----DRCGILPALRVSYYYLSPPLKQCFAYCS 453
G LLR + + L + + D + A+ +S L +K + S
Sbjct: 328 GALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS 387
Query: 454 LLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQELCSRSFFEKSSNDTSK-F 512
+L KD + + + +LW E E QE ++S N S +
Sbjct: 388 ILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRY 435
Query: 513 VMHDLVNDLARWAAGEIYFIMEGTLEVNKQQRISRNLRHLSYIRGEYDGVKRFAGFYDIK 572
+HDL D L+ ++ I++ R+ D D
Sbjct: 436 YLHDLQVDFLTEKNCS-------QLQDLHKKIITQFQRYHQPHTLSPD-------QEDCM 481
Query: 573 YLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHT 632
Y FL+ +++ C+++ L ++ +L + H
Sbjct: 482 YWYNFLAYHMASAKMHKELCALMFSLDWIKA-------KTELVGPAHLIHEFVEY--RHI 532
Query: 633 LLLEDCDRLKTLCADIGNLIKL--HHLKNSNTISLQEMPL 670
L +DC + + + L H L ++ ++ L
Sbjct: 533 LDEKDCAVSE----NFQEFLSLNGHLLGRQPFPNIVQLGL 568
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-105
Identities = 80/542 (14%), Positives = 162/542 (29%), Gaps = 72/542 (13%)
Query: 44 MLVKIKA-VLDDAEEKQRTDQSVKMWLGDLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAA 102
ML +I+ L A + D + L L ED E + R + +
Sbjct: 1 MLCEIECRALSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISKMSTRLERIA----- 55
Query: 103 AAHDHDQTSSSRRSTTTKFRKLIPTCCTTFTLDSIKFEYVMISKIKEI-NDRFQEIVTQK 161
F ++ + F Y S + + D + +
Sbjct: 56 -----------------NFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEP 98
Query: 162 DLLDLKESSAGGSKKAM-QRLPTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVI 220
DLL + S++ + ++L ++ + Y RE +++ L D +
Sbjct: 99 DLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEM---CDLDSFFL 155
Query: 221 PIIGMGGLGKTTLAQLVYNDHR--VQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTID 278
+ G G GK+ +A + + ++D W S + ++ D
Sbjct: 156 FLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSED 215
Query: 279 D----------SDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSK 328
D + + L + N + R L V DDV E W +
Sbjct: 216 DLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLR 267
Query: 329 IIVTTRNQEVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVI 387
+VTTR+ E+ T ++ L D+C + + + E++ K +
Sbjct: 268 CLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIE 324
Query: 388 KCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWD---------LPEDRCGILPALRVSY 438
+G P K + LN+ + P + AL+
Sbjct: 325 LSSGNPATLMMFFKSCEPK--TFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCV 382
Query: 439 YYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQELCS 498
LS + A+ ++P + + + + + +E+ ++ + L
Sbjct: 383 EVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDI---CSNEEEQLDDEVADRLKRLSK 439
Query: 499 RSFFEKSSNDTSK-FVMHDLVNDLARWAAGEIYF-----IMEGTLEVNKQQRISRNLRHL 552
R F + +++ + I+E L +S RH+
Sbjct: 440 RGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLEIGNNNVSVPERHI 499
Query: 553 SY 554
Sbjct: 500 PS 501
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 217 bits (552), Expect = 3e-57
Identities = 118/668 (17%), Positives = 209/668 (31%), Gaps = 169/668 (25%)
Query: 73 HNLAFDV-------EDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRS--TTTKFRK 123
H++ F+ +D+L F+ +AF D +S + +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFE-DAFVDNF----------DCKDVQDMPKSILSKEEIDH 53
Query: 124 LI----PTCCTTFTLDSIKFEYVMISKIKEINDRFQEIVTQKD---LLD-LKESSAGGSK 175
+I T ++ SK +E+ +F E V + + L+ +K S
Sbjct: 54 IIMSKDAVSGTLRLFWTLL------SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 176 KAMQRLPTTS-LVNEAKVYG-----RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLG 229
+ L N+ +V+ R ++ + LL LR + I G+ G G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKN---VLIDGVLGSG 162
Query: 230 KTTLAQLVYNDHRVQDHFDLKA-WTCVSNDF---DVIRLTKTILRCITKQTIDDSD---- 281
KT +A V ++VQ D K W + N V+ + + +L I SD
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 282 ----LNLLQEELNKQLSRKKF---LLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTR 334
++ +Q EL + L K + LLVL +V N A KI++TTR
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA----KA-----WNAFNLSCKILLTTR 273
Query: 335 NQEVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIK------ 388
++V + A +S D T + + K + +
Sbjct: 274 FKQVTDFLS---AATTTHISLDHHSMTLTPD----------EVKSLLLKYLDCRPQDLPR 320
Query: 389 --CNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPEDRCGILPALRVSYYYLSPP-L 445
P + +R G + W++ + N L + S L P
Sbjct: 321 EVLTTNPRRLSIIAESIR--DGLATWDNWKHVNCDKLTT-------IIESSLNVLEPAEY 371
Query: 446 KQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRDEEKEELGHQFFQELCSRSFFEKS 505
++ F S+ P + L+W D + +L S EK
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIW--------FDVIKSDVM---VVVNKLHKYSLVEKQ 420
Query: 506 SNDTSKFVMHDLVNDLARWAAGEIYFIMEGTLEVNKQQRISRNLRHLSYIRGEYDGVKRF 565
+ S + + LE+ + L H S I Y+ K
Sbjct: 421 PKE-STISIPSI------------------YLELKVKLENEYAL-HRS-IVDHYNIPKT- 458
Query: 566 AGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTV-----LNLS--RTNIR 618
+D L + Y I H L ++ T+ L+ IR
Sbjct: 459 ---FDSDDL-------IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 619 ------NLPESIT------KLYNLHTLLLEDCDRLKTLCADIGNLI-----KLHHLKNSN 661
N SI K Y + + ++ + + L I + + L K ++
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 662 TISLQEMP 669
+ + M
Sbjct: 567 LLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 5e-13
Identities = 94/604 (15%), Positives = 186/604 (30%), Gaps = 152/604 (25%)
Query: 822 SGVKRL--SLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISR 879
SG RL +L + F +E + + +++ E + ++I +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKF--VEEVLRINY----KFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 880 CSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLIL 939
+L + + V S + + + AL + + +++
Sbjct: 116 RDRLYND-NQVFA--KYNV--SRLQPYLKLRQ--ALLELR-------------PAKNVLI 155
Query: 940 H-IGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSS-LREIYI 997
+ G + + + C + K+ +L L C T+ + L L + +
Sbjct: 156 DGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 998 RSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITG 1057
+ + L + K L +L
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLL---KSKPYEN--------CLLVLL-----------N 252
Query: 1058 VQLPPSLKLLLIFD--CDSIRTL--TVEEGIQSS-SSSRYTSSLLEHLVIGRCPSLTC-L 1111
VQ + K F+ C + L T + + S++ T L+H + P L
Sbjct: 253 VQ---NAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 1112 FSK------NGLPATLES---LEVGNLPQSLK-FLDVWE------CPKLESIAERLNNNT 1155
K LP + + + + +S++ L W+ C KL +I E +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-----S 361
Query: 1156 SLEVIDIGNC----ENLKILPSGLH----NLCQLQRISIWCCGNLVSFSEGGL--PCAKL 1205
SL V++ + L + P H L + W +++ + K
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-----WF--DVIKSDVMVVVNKLHKY 414
Query: 1206 TRLEISECERLEALPRGLRNLTCLQ------HLTIGDVLSPERDPEDEDRLPTNL----- 1254
+ +E E ++P L H +I D + + + +D +P L
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 1255 -----HSLNIDNMKSWKSFIEWGQGGGGLN-RFSSLQQLRIRGRDQDVVSFPPEEDIGLG 1308
H NI++ + F L+ RF L+Q +IR
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV-----FLDFRF--LEQ-KIR-------------HDSTA 513
Query: 1309 LGTTLPLPATLTYL------VIADLPNLERLSSSI--FYHQ---NLTKLKLCNCPKLKYF 1357
+ + TL L + + P ERL ++I F + NL K + ++
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 1358 PEKG 1361
E
Sbjct: 574 AEDE 577
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 7e-24
Identities = 94/536 (17%), Positives = 180/536 (33%), Gaps = 73/536 (13%)
Query: 145 SKIKEINDRFQEIVTQKDLLDLKESSAGGSKKAMQRLPTTSLVNEAKV-YGRETEKKEIV 203
K++ Q + K++ G + L + + R+ I
Sbjct: 78 EGYKDLAALLQSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLVHAIQ 137
Query: 204 ELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR-VQDHF-DLKAWTCV--SNDF 259
+ L + + + I GM G GK+ LA DH ++ F W + +
Sbjct: 138 QKLWKLNGEP----GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193
Query: 260 DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLS------RKKFLLVLDDVWNENYNDW 313
++ + + + ++ L L EE +L + LL+LDDVW+
Sbjct: 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWV--- 250
Query: 314 VDMSRPLEAGAPGSKIIVTTRNQEVVAIMGTAPAYQL---KRLSTDDCLSVFTQHSLDSR 370
L+A +I++TTR++ V + P + + L + L + + +
Sbjct: 251 ------LKAFDNQCQILLTTRDKSVTDSV-MGPKHVVPVESGLGREKGLEILSLFVNMKK 303
Query: 371 DFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLNSNIWDLPEDRCG- 429
+ L I+ +C G PL +G LLR P+ W L +
Sbjct: 304 E-----DLPAEAHSIIKECKGSPLVVSLIGALLR--DFPNRWAYYLRQLQNKQFKRIRKS 356
Query: 430 -------ILPALRVSYYYLSPPLKQCFAYCSLLPKDYEFEEEEIILLWIAEGFLDHEDRD 482
+ A+ +S L +K + S+L KD + + + +LW D
Sbjct: 357 SSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW-----------D 405
Query: 483 EEKEELGHQFFQELCSRSFFEKSSNDTS-KFVMHDLVNDLARWAAGEIYFIMEGTLEVNK 541
E EE+ QE ++S + N S + +HDL D E N+
Sbjct: 406 LETEEV-EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLT--------------EKNR 450
Query: 542 QQRISRNLRHLSYIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKL 601
Q + + ++ + Y D Y FL+ +++ + C+++ L +
Sbjct: 451 SQLQDLHRKMVTQFQRYYQPHTLSPDQEDCMYWYNFLAYHMASANMHKELCALMFSLDWI 510
Query: 602 QQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHL 657
+ T L I L + E+ +L + ++
Sbjct: 511 KAK---TELVGPAHLIHEFVAYRHILDEKDCAVCENFQEFLSLNGHLLGRQPFPNI 563
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-19
Identities = 66/394 (16%), Positives = 117/394 (29%), Gaps = 94/394 (23%)
Query: 872 LRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRST 931
L+ + LR + L + S +I+
Sbjct: 14 RENLYFQGSTALR-PYHDVLSQWQRHYNA-DRNRWHSAWRQANSNNPQIE----TRTGRA 67
Query: 932 TKHLGLILHIGGCPNLQSLVAEEEQEQQ---QLCDLSCKLEYLGLSYCQGLVTLPQSLLN 988
K +L P +L Q Q LS L+++ + L+ LP ++
Sbjct: 68 LKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS-HLQHMTIDAAG-LMELPDTMQQ 125
Query: 989 LSSLREIYIRSCSSLVSFP-EVALPSKLRLITIWDCEALKSLPE-------AWMCETNSS 1040
+ L + + L + P +A ++LR ++I C L LPE + + +
Sbjct: 126 FAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
Query: 1041 LEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHL 1100
L+ L + + + LP S+ L L+ L
Sbjct: 185 LQSLRL-EWTGIR-----SLPASIANL---------------------------QNLKSL 211
Query: 1101 VIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVI 1160
I L+ L + L L+ LD+ C L + L+ +
Sbjct: 212 KIRNS-PLS------ALGPAIHHL------PKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
Query: 1161 DIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALP 1220
+ +C NL LP +H L QL+ +L++ C L LP
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLE------------------------KLDLRGCVNLSRLP 294
Query: 1221 RGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNL 1254
+ L + + L + D P
Sbjct: 295 SLIAQLPANCIILVPPHLQAQLDQH----RPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-17
Identities = 56/339 (16%), Positives = 110/339 (32%), Gaps = 85/339 (25%)
Query: 979 LVTLPQSLLNLSSLREIYIRSCSSLVSFPEV---------------ALPSKLRLIT---- 1019
+ + + S +Y + ++L + +V +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60
Query: 1020 -IWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTL 1078
ALK+ + T L + L Q P F ++ +
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSV-PLP-----QFPDQ-----AFRLSHLQHM 109
Query: 1079 TVEEGIQSSSSSRYTSSLLEHL--VIGRCPSLTCL-FSKNGLPATLESL--EVGNLPQSL 1133
T++ ++ L L + + L L ++N L +L + +L L
Sbjct: 110 TID------------AAGLMELPDTMQQFAGLETLTLARNP----LRALPASIASL-NRL 152
Query: 1134 KFLDVWECPKLESIAERLNNN---------TSLEVID------------IGNCENLKIL- 1171
+ L + CP+L + E L + +L+ + I N +NLK L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212
Query: 1172 ---------PSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRG 1222
+H+L +L+ + + C L ++ A L RL + +C L LP
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 1223 LRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDN 1261
+ LT L+ L + ++ R P +L + +
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPP 310
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 61/390 (15%), Positives = 101/390 (25%), Gaps = 87/390 (22%)
Query: 620 LPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQ 679
L + L+ + + ++ + R Q
Sbjct: 4 SHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR----NRWHSAWRQANSNNPQ 59
Query: 680 TLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRW 739
G L+ LE+ L LR
Sbjct: 60 IETR------TGRALKAT-----------ADLLEDATQ------------PGRVALELR- 89
Query: 740 ARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCG 799
P+ +L+ I+ + P + + L TL
Sbjct: 90 -SVPLPQ-FPDQ-------AFRLSHLQHMTIDAAGLMELPDTMQ--QFAGLETLTLARNP 138
Query: 800 MCTSLP-SVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPF---PCLETLHFEDMKEWE 855
+ +LP S+ L L+ L +R + L D+ L++L E
Sbjct: 139 L-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197
Query: 856 EWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPE---RLPALEMFVIQSCEELVVSVMSL 912
+P I L+ L I L L LP LE ++ C L +
Sbjct: 198 --LP----ASIANLQNLKSLKIRNS-PLS-ALGPAIHHLPKLEELDLRGCTALR----NY 245
Query: 913 PALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLG 972
P G + L + C NL +L + + L+ +LE L
Sbjct: 246 PP----IFGGRAPLKR----------LILKDCSNLLTLPLD-------IHRLT-QLEKLD 283
Query: 973 LSYCQGLVTLPQSLLNLSSLREIYIRSCSS 1002
L C L LP + L + I +
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-13
Identities = 48/294 (16%), Positives = 87/294 (29%), Gaps = 79/294 (26%)
Query: 608 TVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQE 667
L L + P+ +L +L + ++ L L + L L + L+
Sbjct: 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRA 141
Query: 668 MPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLS 727
+P L L+ L +
Sbjct: 142 LPASIASLNRLREL-------------------------------------------SIR 158
Query: 728 GKKNLKVLLLRWARNSFDSRVPET--ETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDS 785
L L PE T + NL+ + P +
Sbjct: 159 ACPELTEL-------------PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA-- 203
Query: 786 SLSKLVTLKFQYCGMCTSLP-SVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLE 844
+L L +LK + + ++L ++ L L+ L++RG + ++ F G L+
Sbjct: 204 NLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIF-GG-----RAPLK 256
Query: 845 TLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPE---RLPALE 895
L +D +P +I +L +L + C L LP +LPA
Sbjct: 257 RLILKDCSNLLT-LPL----DIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANC 304
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-11
Identities = 48/229 (20%), Positives = 79/229 (34%), Gaps = 52/229 (22%)
Query: 600 KLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKN 659
+L L+ + + + LP+++ + L TL L L+ L A I +L +L L
Sbjct: 102 RLSHLQH---MTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157
Query: 660 SNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTL------DISNLE 713
L E+P L L+ L L T I+NL
Sbjct: 158 RACPELTELPEPLASTDASGEHQG----------LVNLQSL-RLEWTGIRSLPASIANL- 205
Query: 714 NVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGY 773
+NLK L +R + + + + L LEE + G
Sbjct: 206 ----------------QNLKSLKIR--NSPLSA-LGPA----IHHLP---KLEELDLRGC 239
Query: 774 RG-TKFPIWLGDSSLSKLVTLKFQYCGMCTSLP-SVGQLRSLKHLEVRG 820
+P G + L L + C +LP + +L L+ L++RG
Sbjct: 240 TALRNYPPIFGG--RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 44/231 (19%), Positives = 73/231 (31%), Gaps = 57/231 (24%)
Query: 600 KLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGN--------- 650
+ L L L+R +R LP SI L L L + C L L + +
Sbjct: 125 QFAGL---ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181
Query: 651 LIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDIS 710
L+ L L+ T ++ +P L L++L R S L L I
Sbjct: 182 LVNLQSLRLEWT-GIRSLPASIANLQNLKSL------KIRNSPLSAL--------GPAIH 226
Query: 711 NLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCI 770
+L ++ + L G L+ P L+ +
Sbjct: 227 HLPKLEEL------DLRGCTALRNY-------------PPI----FGGRA---PLKRLIL 260
Query: 771 NGYRG-TKFPIWLGDSSLSKLVTLKFQYCGMCTSLP-SVGQLRSLKHLEVR 819
P+ + L++L L + C + LP + QL + + V
Sbjct: 261 KDCSNLLTLPLDIH--RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 592 CSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNL 651
+ L L L L T IR+LP SI L NL +L + + L L I +L
Sbjct: 173 TDASGEHQGLVNL---QSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHL 228
Query: 652 IKLHHLKNSNTISLQEMPLRFGKLTCLQTL 681
KL L +L+ P FG L+ L
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 9e-09
Identities = 42/266 (15%), Positives = 74/266 (27%), Gaps = 52/266 (19%)
Query: 1144 LESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSE------ 1197
+ S ++++ E + L+ L + + +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60
Query: 1198 ---------------GGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGD----VL 1238
LE+ L P L+ LQH+TI L
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMEL 119
Query: 1239 SPERDPEDEDRLPTNLHSLNIDN--MKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDV 1296
P+ + L +L + +++ + I + L++L IR + +
Sbjct: 120 -----PDTMQQF-AGLETLTLARNPLRALPASIA---------SLNRLRELSIRACPE-L 163
Query: 1297 VSFPPEEDIGLGLGTTLPLPATLTYLVIADLPN--LERLSSSIFYHQNLTKLKLCNCPKL 1354
P L L L L + L +SI QNL LK+ N L
Sbjct: 164 TELPEP----LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PL 218
Query: 1355 KYFPEK-GLPASLLRLEISGCPLIEE 1379
L L++ GC +
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRN 244
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 600 KLQQLRVFTVLNLSRTN-IRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLK 658
L+ L L + + LP I +L L L L C L L + I L +
Sbjct: 251 GRAPLKR---LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307
Query: 659 NSNTISLQ 666
+ Q
Sbjct: 308 VPPHLQAQ 315
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 4e-14
Identities = 92/534 (17%), Positives = 164/534 (30%), Gaps = 151/534 (28%)
Query: 764 NLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSG 823
+L +N L SL+ L +L + S+ SL L++ S
Sbjct: 56 DLSSKPLNVGFSA-VSSSLL--SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS- 111
Query: 824 VKRLSLEFYGNDSPIPFPC-------LETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELH 876
G P+ L+ L+ G L L
Sbjct: 112 -------LSG---PVTTLTSLGSCSGLKFLNVSSNT----LDFPGKVSGGLKLNSLEVLD 157
Query: 877 ISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLG 936
+S S + G + L I G +
Sbjct: 158 LSANS-ISGANVVGWVLSD---------------GCGELKHLAISGN----------KIS 191
Query: 937 LILHIGGCPNLQSLVAEEEQEQQQLCDLS--------------CKLEYLGLSYCQ--GLV 980
+ + C NL+ L D+S L++L +S + G
Sbjct: 192 GDVDVSRCVNLEFL------------DVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-- 237
Query: 981 TLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSS 1040
+++ + L+ + I S + P + L S L+ +++ + + +P+ ++ +
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPD-FLSGACDT 295
Query: 1041 LEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHL 1100
L L+++G G +PP C + +L + SS+ ++ L
Sbjct: 296 LTGLDLSGNH----FYG-AVPPF-----FGSCSLLESLAL-------SSNNFSGELPMD- 337
Query: 1101 VIGRCPSLTCLF-SKNGL----PATLESLEVGNLPQSLKFLDVWECPKLE-SIAERLNNN 1154
+ + L L S N P +L NL SL LD+ I L N
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESL-----TNLSASLLTLDLSSN-NFSGPILPNLCQN 391
Query: 1155 --TSLEVID-------------IGNCENLKIL-----------PSGLHNLCQLQRISIWC 1188
+L+ + + NC L L PS L +L +L+ + +W
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW- 450
Query: 1189 CGNLVSFSEGGLP-----CAKLTRLEISECERLE-ALPRGLRNLTCLQHLTIGD 1236
N G +P L L + L +P GL N T L +++ +
Sbjct: 451 -LN--MLE-GEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSN 499
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 106/652 (16%), Positives = 188/652 (28%), Gaps = 212/652 (32%)
Query: 608 TVLNLSRTNIRN----LPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLK-NSNT 662
T ++LS + + S+ L L +L L + ++ + L L + N+
Sbjct: 53 TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNS 111
Query: 663 ISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFL----MHLRGTLDISNLENVKHV 718
+S G +T L +L + LKFL L +S +
Sbjct: 112 LS--------GPVTTLTSLGS----------CSGLKFLNVSSNTLDFPGKVSGGLKLN-- 151
Query: 719 GDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCI--NGYRGT 776
+L+VL L NS L+ I N G
Sbjct: 152 ------------SLEVLDLSA--NSISGANVVGWVLSDGC----GELKHLAISGNKISGD 193
Query: 777 KFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSL-EFYGND 835
+ S L L T +P +G +L+HL +S + G
Sbjct: 194 -VDV----SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL---------DISGNKLSG-- 237
Query: 836 SPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLP-ERLPAL 894
+ I +L+ L+IS G +P L +L
Sbjct: 238 -DFS------------------------RAISTCTELKLLNISSNQ-FVGPIPPLPLKSL 271
Query: 895 EMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHL-GLI--LHIGGCPNLQSLV 951
+ + G I G C L
Sbjct: 272 QYLSLAEN-------------------------------KFTGEIPDFLSGACDTLT--- 297
Query: 952 AEEEQEQQQLCDLSCKLEYLGLSYCQGLV-TLPQSLLNLSSLREIYIRSCSSLVSFPEVA 1010
L LS +P + S L + + S + P
Sbjct: 298 ------------------GLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 1011 LP--SKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLL 1068
L L+++ + E LPE + ++SL L+++ + +G + P+L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNN----FSG-PILPNLCQNP 392
Query: 1069 IFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNGLPATLESLEVG 1127
+++ L + ++ +T + + C L L S N L G
Sbjct: 393 KN---TLQELYL-------QNNGFTGKIPPT--LSNCSELVSLHLSFNYL--------SG 432
Query: 1128 NLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLK-ILPSGLHNLCQLQRISI 1186
+P S L + + L + + L+ +P L + L+ + +
Sbjct: 433 TIPSS------------------LGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLIL 473
Query: 1187 WCCGNLVSFSEGGLP-----CAKLTRLEISECERLE-ALPRGLRNLTCLQHL 1232
N + G +P C L + +S RL +P+ + L L L
Sbjct: 474 D--FN--DLT-GEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAIL 519
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 7e-14
Identities = 65/423 (15%), Positives = 127/423 (30%), Gaps = 68/423 (16%)
Query: 868 GFPKLRELHISRCS---KLRGTLPERLPALEMFVIQSCEE-----LVVSVMSLPALCKFK 919
+ L E+ + R + + ++ V+ SCE L + L +
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162
Query: 920 IDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQ------QQLCDLSCKLEYLGL 973
+ V + L +L SL + ++L L+ L L
Sbjct: 163 LRESD--VDDVSGHWLSHFPD--TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218
Query: 974 SYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAW 1033
+ L L L L E+ ++ V + S + C+ L+ L W
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA----LSGCKELRCLSGFW 274
Query: 1034 ---------MCETNSSLEILNIAGCSSLTY--ITGVQLPPSLKLLLIFD----------- 1071
+ S L LN++ + +Y + + P L+ L + D
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334
Query: 1072 --CDSIRTLTVE--EGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKN---------GLP 1118
C +R L V E + T L + +G CP L + +
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLESVLYFCRQMTNAALITIA 393
Query: 1119 ATLESLEVGNLPQSLKFLDVWECPKL--ESIAERLNNNTSLEVIDIGNCENLKILPSGLH 1176
++ L + + + + L + + K+
Sbjct: 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT 453
Query: 1177 NLCQLQRISIWCCGN----LVSFSEGGLPCAKLTRLEISECERL-EALPRGLRNLTCLQH 1231
+++ +S+ G+ + G C L +LEI +C +AL L ++
Sbjct: 454 YAKKMEMLSVAFAGDSDLGMHHVLSG---CDSLRKLEIRDCPFGDKALLANASKLETMRS 510
Query: 1232 LTI 1234
L +
Sbjct: 511 LWM 513
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 8e-11
Identities = 72/481 (14%), Positives = 144/481 (29%), Gaps = 49/481 (10%)
Query: 785 SSLSKLVTLKFQYCGMC-TSLPSVGQ-LRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPC 842
SS + L ++ + + L + + ++ K L + G L
Sbjct: 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT----CRN 157
Query: 843 LETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRG-----TLPERLPALEMF 897
L+ L + + S + + L L+IS + L R P L+
Sbjct: 158 LKELDLRESDVDDV-SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216
Query: 898 VIQSC---EELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEE 954
+ E+L + P L + G V + GL + + GC L+ L
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV--RPDVYSGLSVALSGCKELRCLSGFW 274
Query: 955 E---QEQQQLCDLSCKLEYLGLSYCQGL-VTLPQSLLNLSSLREIYIRSCSSLVSFPEVA 1010
+ + + +L L LSY L + L L+ +++ +A
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334
Query: 1011 LP-SKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLI 1069
LR + ++ E P + T L + GC L ++
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVAL--TEQGLVSV-SMGCPKLES-------------VL 378
Query: 1070 FDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNL 1129
+ C + + ++ + L + LT G A +E
Sbjct: 379 YFCRQMTNAALITIARNRPNMTRFR--LCIIEPKAPDYLTLEPLDIGFGAIVEHC----- 431
Query: 1130 PQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCEN-LKILPSGLHNLCQLQRISIWC 1188
+ L+ L + + +E++ + + + L L+++ I
Sbjct: 432 -KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490
Query: 1189 CGNL-VSFSEGGLPCAKLTRLEISECE-RLEALPRGLRNLTCLQHLTIGDVLSPERDPED 1246
C + + L +S C A + + L I + +P+ PE
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550
Query: 1247 E 1247
Sbjct: 551 C 551
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 80/519 (15%), Positives = 152/519 (29%), Gaps = 94/519 (18%)
Query: 923 CKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTL 982
CK W + + IG C + + K+ + L
Sbjct: 34 CKS--WYEIERWCRRKVFIGNCYAVSP---------ATVIRRFPKVRSVELKGKPHFADF 82
Query: 983 PQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDC----EALKSLPEAWMCETN 1038
+I + SS + L I + + L+ + +++
Sbjct: 83 NLVPDGWGGYVYPWIEAMSSSYT--------WLEEIRLKRMVVTDDCLELIAKSF----- 129
Query: 1039 SSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLE 1098
+ ++L ++ C + L + C +++ L + E S + L
Sbjct: 130 KNFKVLVLSSCEGFS-------TDGLAAIAA-TCRNLKELDLRE----SDVDDVSGHWLS 177
Query: 1099 HLVIGRCPSLTCL-FSKNGLPATLESLE--VGNLPQSLKFLDVWECPKLESIAERLNNNT 1155
H SL L S + +LE V P +LK L + LE +A L
Sbjct: 178 HFPDT-YTSLVSLNISCLASEVSFSALERLVTRCP-NLKSLKLNRAVPLEKLATLLQRAP 235
Query: 1156 SLEVIDIGNCENL--KILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP-----CAKLTRL 1208
LE + G + SGL + + C LP C++LT L
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCK-ELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294
Query: 1209 EISECERL-EALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKS 1267
+S L + L LQ L + D + + E +L L + + +
Sbjct: 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE-DAGLEVLASTCKDLRELRVFPSEPFVM 353
Query: 1268 FIEWGQGGGGL-----------------------------NRFSSLQQLRIRGRDQDVVS 1298
GL ++ + R+ +
Sbjct: 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413
Query: 1299 FPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFP 1358
+ E + +G G + L L ++ L + Y + + L +
Sbjct: 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG----DS 469
Query: 1359 EKGLPA------SLLRLEISGCPLIEERYIKDGGQYRHL 1391
+ G+ SL +LEI CP ++ + + + +
Sbjct: 470 DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 6e-13
Identities = 69/469 (14%), Positives = 137/469 (29%), Gaps = 53/469 (11%)
Query: 782 LGDSSLSKLVTLKFQYCGMCT--SLPSVGQ-LRSLKHLEVRGMSGVKRLSLEFYGNDSPI 838
L + L TLK C T L S+ R +K L + S ++ ++
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL--HELAQ 189
Query: 839 PFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLR----GTLPERLPAL 894
LE L+F M E+ + P+ L + + L L
Sbjct: 190 HNTSLEVLNF-YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248
Query: 895 EMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSL-VAE 953
+ + M+L K G + + + ++ L +
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN------EMPILFPFAAQIRKLDLLY 302
Query: 954 EEQEQQQLCDLSCK---LEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVA 1010
E + C L K LE L G L L+ + I + +
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362
Query: 1011 LP-SKLRLITIWD-CEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLL 1068
S+ LI + C+ L+ + TN SLE + +L +L+L
Sbjct: 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI-GTYLKNLC---------DFRLVL 412
Query: 1069 IFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNGLPATLESLE-V 1126
+ + I L ++ G++S C L F T L +
Sbjct: 413 LDREERITDLPLDNGVRSLLIG--------------CKKLRRFAFYLRQGGLTDLGLSYI 458
Query: 1127 GNLPQSLKFLDVWECPKL-ESIAERLNNNTSLEVIDIGNCENL-KILPSGLHNLCQLQRI 1184
G +++++ + + E + E +L+ +++ C + + + + L L+ +
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518
Query: 1185 SIWCCG---NLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQ 1230
+ + P + + +
Sbjct: 519 WVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAH 567
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 88/513 (17%), Positives = 148/513 (28%), Gaps = 106/513 (20%)
Query: 923 CKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQ----- 977
C++ W + + C +L L L L
Sbjct: 41 CRR--WFKIDSETREHVTMALCYTATP---------DRLSRRFPNLRSLKLKGKPRAAMF 89
Query: 978 GLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCET 1037
L+ + EI + L S R + + D L L +A
Sbjct: 90 NLIPENWGGYVTPWVTEI-SNNLRQLKSV-------HFRRMIVSD-LDLDRLAKARA--- 137
Query: 1038 NSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLL 1097
LE L + CS T L ++ C I+TL +EE S ++ L
Sbjct: 138 -DDLETLKLDKCSGFTTD-------GLLSIVTH-CRKIKTLLMEESSFSEKDGKWLHELA 188
Query: 1098 EHLVIGRCPSLTCL-FSKNGLPA-TLESLE-VGNLPQSLKFLDVWECPKLE--SIAERLN 1152
+H SL L F + + LE + +SL + V + LE +
Sbjct: 189 QH-----NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243
Query: 1153 NNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISE 1212
N + + L +L R+ + G A++ +L++
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLY 302
Query: 1213 CERL-EALPRGLRNLTCLQHLTIGDVLSPERDPEDED-----RLPTNLHSLNIDNMKSWK 1266
E ++ L+ L +V+ D + L L I+ +
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLETRNVIG------DRGLEVLAQYCKQLKRLRIERGADEQ 356
Query: 1267 SFIEWGQGGG--GLNRFS----SLQQLRIRGRDQDVVSFPPEEDIGLGLG---------- 1310
+ GL + L+ + + D S E IG L
Sbjct: 357 GMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL---ESIGTYLKNLCDFRLVLL 413
Query: 1311 ------TTLPLPATLTYLVIADLPNLERLSSSI--------------FYHQNLTKLKLCN 1350
T LPL + L+ L R + + Y N+ + L
Sbjct: 414 DREERITDLPLDNGVRSLL-IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472
Query: 1351 CPK----LKYFPEKGLPASLLRLEISGCPLIEE 1379
+ L F +G P +L +LE+ GC E
Sbjct: 473 VGESDEGLMEF-SRGCP-NLQKLEMRGCCFSER 503
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 7e-08
Identities = 81/539 (15%), Positives = 149/539 (27%), Gaps = 84/539 (15%)
Query: 570 DIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRN---LPESITK 626
+K L + G + ++ LR ++ R + + + +
Sbjct: 79 KLKGKPRAAMFNLIPENWGGYVTPWVTEIS--NNLRQLKSVHFRRMIVSDLDLDRLAKAR 136
Query: 627 LYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVV 686
+L TL L+ C G L + H + T+ ++E L L
Sbjct: 137 ADDLETLKLDKCSGFT----TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA---- 188
Query: 687 GNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDS 746
+ L L F M + +LE ++L + +
Sbjct: 189 --QHNTSLEVLNFYMTEFAKISPKDLE----------TIARNCRSLVSVKVGDFEILELV 236
Query: 747 RVPETETRVLDMLKPHQNLEEFCINGYRGT--KFPIWLGDSSLSKLVTLKFQYCGMCTSL 804
K NLEEFC ++ KL L Y G
Sbjct: 237 GF----------FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP 286
Query: 805 PSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQ 864
++ L++ P LE L + RG
Sbjct: 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQK-----CPNLEVLETRN-----VIGDRGLEV 336
Query: 865 EIEGFPKLRELHISRCSKLRG--------------TLPERLPALEMFVIQSC----EELV 906
+ +L+ L I R + +G L + LE + E L
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396
Query: 907 VSVMSLPALCKFKIDGCKKVVWRSTTKHL--GLILHIGGCPNLQSLVAEEEQEQ------ 958
L LC F++ + R T L G+ + GC L+ Q
Sbjct: 397 SIGTYLKNLCDFRLVLLDRE-ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455
Query: 959 QQLCDLSCKLEYLGLSYCQ----GLVTLPQSLLNLSSLREIYIRSCS-SLVSFPEVALP- 1012
+ S + ++ L Y GL+ +L+++ +R C S +
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKL 512
Query: 1013 SKLRLITIWDCEA-LKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIF 1070
LR + + A + M ++E++ + ++ +L +
Sbjct: 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAY 571
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-12
Identities = 75/588 (12%), Positives = 162/588 (27%), Gaps = 150/588 (25%)
Query: 871 KLRELHISRCSKLRGTLPE---RLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVV 927
++ L + G +P+ +L LE+ + S E V + P I
Sbjct: 82 RVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPK----GISANMSDE 136
Query: 928 WRSTTKHLGLILHIGGCPNLQSL--------VAEEEQEQQQLCDLSCKLEYLGLSYCQGL 979
+ + + P +++ ++ ++ K +G +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-I 195
Query: 980 VTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETN- 1038
+ ++++ L+ LR+ Y+ + F + + K+ W N
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSP----FVAENICEAWENENSEYAQQYKTEDLKW---DNL 248
Query: 1039 SSLEILNIAGCSSLTYITGVQLPPSLKLL-----LIFDCDSIRTLTVEEGIQSSSSSRYT 1093
L + + C +LT +LP LK L + C+ + + + +
Sbjct: 249 KDLTDVEVYNCPNLT-----KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303
Query: 1094 SSLLEHL--------------VIGRCPSLTCLF-SKNGLPATLESLEVGNLPQSLKFLDV 1138
++ + + + L L N L L + G+ L L++
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF--GSE-IKLASLNL 360
Query: 1139 WECPKLESI-AERLNNNTSLEVIDIGNCENLKILPS--GLHNLCQLQ-------RISIWC 1188
++ I A +E + + LK +P+ ++ + I
Sbjct: 361 AYN-QITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418
Query: 1189 CGNLVSFSEGGLPCAKLTRLEISECERLEALPRG-LRNLTCLQHLTIGD-------VLSP 1240
N ++ + +S ++ P+ + L + + S
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477
Query: 1241 ERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFP 1300
+ + E+ L S+++ N+ + L
Sbjct: 478 KDENENFKNT-YLLTSIDLRF-----------------NKLTKL---------------S 504
Query: 1301 PEEDIGLGLGTTLPLPATLTYLVIADLPN--LERLSSSIFYHQNLTKLKL---------- 1348
+ TL YLV DL + + L +
Sbjct: 505 DDFRAT-----------TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNR 553
Query: 1349 ---------CNCPKLKY----------FPEKGLPASLLRLEISGCPLI 1377
CP L EK P ++ L+I P I
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP-NISVLDIKDNPNI 600
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 40/290 (13%), Positives = 90/290 (31%), Gaps = 50/290 (17%)
Query: 962 CDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRS----CSSLVSFP-EVALPSKLR 1016
+ + ++ L L +P ++ L+ L + + S + + P ++
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 1017 LITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIR 1076
K+ + E S L I I S ++ L
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI-----KKSSRITL-----KDT 186
Query: 1077 TLTVEE-GIQSSSSSRYTSSLLEHLVIGRCPSLTCLF-SKNGLPATLESLEVGNLPQSLK 1134
+ I S + + R L + + A N+ ++ +
Sbjct: 187 QIGQLSNNITFVSKA-----------VMRLTKLRQFYMGNSPFVAE-------NICEAWE 228
Query: 1135 FLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVS 1194
+ + ++ + +N L +++ NC NL LP+ L L ++Q I++ C +S
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGIS 287
Query: 1195 FSEGGLPCAKLTRLEISECERLEAL------------PRGLRNLTCLQHL 1232
+ L + E+++ + L+ + L L
Sbjct: 288 GEQLKDDWQALA--DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 6e-10
Identities = 64/513 (12%), Positives = 136/513 (26%), Gaps = 118/513 (23%)
Query: 574 LRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTL 633
F ++ + SI + T + NI + +++ +L L
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKD---TQIGQLSNNITFVSKAVMRLTKLRQF 211
Query: 634 -------------------LLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGK 674
E + KT NL L ++ N +L ++P
Sbjct: 212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271
Query: 675 LTCLQTL----CNFVVGN---DRGSRLRELKFLMHLRGTLDIS--NLENVKHVGDAKEAH 725
L +Q + + G D L + ++ + I NL+ E
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNNLKTFP-----VETS 325
Query: 726 LSGKKNLKVLLLRWARNSFDSRVPE----TETRVLDM-------LKPH-----QNLEEFC 769
L K L +L N + ++P + L++ + + + +E
Sbjct: 326 LQKMKKLGMLECL--YNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383
Query: 770 INGYRGTKFPIWLGDSSLSKLVTLKFQY-------CGMCTSLP-SVGQLRSLKHLEVRG- 820
+ P S+S + + F Y L + + ++ + +
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Query: 821 -MSGVKRLSLEFYGNDSPIPFPCLETLHFED--MKEWEEWIPRGSSQEIEGFPKLRELHI 877
+S E + L +++ + E + + ++ + L + +
Sbjct: 444 QISK---FPKELFST-----GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495
Query: 878 SRCSKLRGTLPE----RLPALEMFVIQSC--EELVVSVMSLPALCKFKIDGCKKVVWRST 931
KL + LP L + + ++ L F I +
Sbjct: 496 RFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA---QG 551
Query: 932 TKHLGLI-LHIGGCPNLQSLVAEEEQEQQQLCDLSC------------KLEYLGLSYCQG 978
+ L I CP+L L + + L +
Sbjct: 552 NRTLREWPEGITLCPSLTQL------------QIGSNDIRKVNEKITPNISVLDIKDNPN 599
Query: 979 LVTLPQSLLNLSSLREIY--------IRSCSSL 1003
+ + IR C +L
Sbjct: 600 ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 6e-10
Identities = 56/488 (11%), Positives = 130/488 (26%), Gaps = 113/488 (23%)
Query: 764 NLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLP-SVGQLRSLKHLEVRGMS 822
+L + CIN K I K + + T + +V +L L+ +
Sbjct: 160 DLIKDCINSDPQQK-SIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYM---- 213
Query: 823 GVKRLSLEFYGND--SPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRC 880
+ + E + E ++ + + + L ++ + C
Sbjct: 214 ---------GNSPFVAENICEAWENENSEYAQQ-YKTED----LKWDNLKDLTDVEVYNC 259
Query: 881 SKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILH 940
L LP + +LP + + + + +
Sbjct: 260 PNL-TKLPT------------------FLKALPEMQLINVACNRGISGEQLKDDWQALAD 300
Query: 941 IGGCPNLQSLVAEEEQ-----EQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREI 995
+Q + + L + KL L Y Q L + + L +
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGMLECLYNQ-LEGKLPAFGSEIKLASL 358
Query: 996 YIRSCSSLVSFPE--VALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGC--SS 1051
+ + P ++ ++ + LK +P + ++ S + ++ + S
Sbjct: 359 NLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 1052 LTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL 1111
+ L P+ + +++ +
Sbjct: 417 VDGKNFDPLDPT--------------------------------------PFKGINVSSI 438
Query: 1112 -FSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKI 1170
S N + + L +++ L I + + + N L
Sbjct: 439 NLSNNQI-SKFPKELFSTGS-PLSSINLMGN-MLTEIPKNSLKDENEN---FKNTYLLTS 492
Query: 1171 LPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQ 1230
+ L +L ++S F LP L +++S P N + L+
Sbjct: 493 I--DLRF-NKLTKLS-------DDFRATTLP--YLVGIDLSYN-SFSKFPTQPLNSSTLK 539
Query: 1231 HLTIGDVL 1238
I +
Sbjct: 540 GFGIRNQR 547
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 9e-10
Identities = 67/621 (10%), Positives = 156/621 (25%), Gaps = 132/621 (21%)
Query: 608 TVLNLSRTNIR-NLPESITKLYNLHTLLL----EDCDRLKTLCADIGNLIKLHHLKNSNT 662
T L+L +P++I +L L L L E + I + +
Sbjct: 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143
Query: 663 ISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDIS--NLENVKHVGD 720
+ + + + + + + +++ + + N+ V
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV----- 198
Query: 721 AKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPI 780
+ L+ + + F + ++N E +
Sbjct: 199 --SKAVMRLTKLRQFYM--GNSPFVAENICE-------AWENENSEYAQQYKT----EDL 243
Query: 781 WLGDSSLSKLVTLKFQYCGMCTSLP-SVGQLRSLKHLEVRG--MSGVKRLSLEFYGNDSP 837
+L L ++ C T LP + L ++ + V ++L ++
Sbjct: 244 KWD--NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301
Query: 838 IPFPCLETLHFEDMKEWEEWIPRGS-SQEIEGFPKLRELHISRCSKLRGTLPE--RLPAL 894
++ ++ + ++ KL L +L G LP L
Sbjct: 302 PVGEKIQIIYIGYNN-----LKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKL 355
Query: 895 EMFVIQSC--EELVVSVMS-LPALCKFKIDGCKKVVWRSTTKHLGLI---LHIGGCPNLQ 948
+ E+ + + K L I +
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNK----------LKYIPNIFDAKSVSVMS 405
Query: 949 SLVAE----EEQEQQQLCDLS------CKLEYLGLSYCQGLVTLPQSLL-NLSSLREIYI 997
++ + + L + + LS Q + P+ L S L I +
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINL 464
Query: 998 RSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITG 1057
L P+ +L + L +++ +T
Sbjct: 465 MGNM-LTEIPKNSLKDENENFKNT-----------------YLLTSIDLRFNK----LTK 502
Query: 1058 VQLPPSLKLLLIFDCDSIRTLTVE----EGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFS 1113
L + + + + + +L
Sbjct: 503 --LSDDFRAT---TLPYLVGIDLSYNSFSKFPTQ--------------PLNSSTLKGFGI 543
Query: 1114 KNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNN----------TSLEVIDIG 1163
+N A P+ + CP L + ++ +N ++ V+DI
Sbjct: 544 RNQRDAQGNRTL-REWPEGI-----TLCPSLTQL--QIGSNDIRKVNEKITPNISVLDIK 595
Query: 1164 NCENLKILPSGLHNLCQLQRI 1184
+ N+ I S + +
Sbjct: 596 DNPNISIDLSYVCPYIEAGMY 616
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-12
Identities = 83/502 (16%), Positives = 160/502 (31%), Gaps = 72/502 (14%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESI-TKLYNLHTLLLEDCDR 640
LS N Y+ L LQ VL L + I + L +L L L D
Sbjct: 33 LSFNKITYIGHGDLRACANLQ------VLILKSSRINTIEGDAFYSLGSLEHLDLSDN-H 85
Query: 641 LKTL-CADIGNLIKLHHLK-NSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELK 698
L +L + G L L +L N + F LT LQTL + + S +R +
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL--RIGNVETFSEIRRID 143
Query: 699 F--LMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVL 756
F L L L+I L ++++ + L +++ L L + ++F + +
Sbjct: 144 FAGLTSLN-ELEIKAL-SLRNY---QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198
Query: 757 DMLKPHQN-LEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKH 815
L+ L F + + + + V + + L + +L ++
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258
Query: 816 LEVR--GMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLR 873
+ G+ + + + LH + K++
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY--DLSTV---YSLLEKVK 313
Query: 874 ELHISRC--SKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRST 931
+ + + + + L +L E L +S +
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSL--------EFLDLSENLM------------------V 347
Query: 932 TKHLGLILHIGGCPNLQSL------VAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQS 985
++L G P+LQ+L + ++ + L L L L +S +P S
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK-NLTSLDISRNT-FHPMPDS 405
Query: 986 LLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILN 1045
+R + + S + +P L ++ + + L S L+ L
Sbjct: 406 CQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNNN-LDSFS-----LFLPRLQELY 457
Query: 1046 IAGCSSLTYITGVQLPPSLKLL 1067
I+ L + L P L ++
Sbjct: 458 ISRN-KLKTLPDASLFPVLLVM 478
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 7e-12
Identities = 69/530 (13%), Positives = 141/530 (26%), Gaps = 87/530 (16%)
Query: 785 SSLSKLVTLKFQYCGMCTSLP-SVGQLRSLKHLEVRG--------MSGVKRLSLEFYGN- 834
+ ++ L G +P ++GQL LK L + G + L+ +
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379
Query: 835 -------DSPIPFPCLETLHFEDMKEWE-EWIPRGSSQEIEGFPKLRELHISRCSKLRGT 886
+ + L+ D+ + P + + L++ I +
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439
Query: 887 LPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPN 946
+ + + L + + + + ++ L +
Sbjct: 440 ISKAIQRL-----TKLQIIYFANSPFTYDNIA--VDWEDANSDYAKQYENEELSWSNLKD 492
Query: 947 LQSLVAEEEQEQ----QQLCDLSCKLEYLGLSYCQ---------GLVTLPQSLLNLSSLR 993
L + L DL +L+ L ++ + L ++
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551
Query: 994 EIYIRSCSSLVSFPEVALPSKLRLITIWDCE--ALKSLPEAWMCETNSSLEILNIAGCSS 1051
Y+ + L FP A K+ + + DC ++ L TN L L +
Sbjct: 552 IFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLEA---FGTNVKLTDLKLDYNQ- 606
Query: 1052 LTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL 1111
+ I P D + L S + + +
Sbjct: 607 IEEI-----PEDFCAFT----DQVEGLGF--------SHNKLKYIPNIFNAKSVYVMGSV 649
Query: 1112 -FSKN---GLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNC-- 1165
FS N + + + + + E + + I + N
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709
Query: 1166 -----ENLKILPSGLHNLCQLQRISIWCCGN-LVSFSEGGLPCA--KLTRLEISECERLE 1217
+LK N L I + N L S S+ L+ +++S
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDL--RFNKLTSLSDDFRATTLPYLSNMDVSYN-CFS 766
Query: 1218 ALPRGLRNLTCLQHLTIGDVLSP------ERDPEDEDRLPTNLHSLNIDN 1261
+ P N + L+ I + P P +L L I +
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP-SLIQLQIGS 815
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 5e-11
Identities = 38/287 (13%), Positives = 92/287 (32%), Gaps = 35/287 (12%)
Query: 962 CDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIW 1021
D + ++ L L+ +P ++ L+ L+ + + S VS ++
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 1022 DCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVE 1081
++ + + + L + ++ + + ++ L + +
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL----KDTQIGNLT 434
Query: 1082 EGIQSSSSSRYTSSLLEHLVIGRCPSLTCLF-SKNGLPATLESLEVGNLPQSLKFLDVWE 1140
I S + I R L ++ + + N+ + +
Sbjct: 435 NRITFISKA-----------IQRLTKLQIIYFANS-------PFTYDNIAVDWEDANSDY 476
Query: 1141 CPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWC---------CGN 1191
+ E+ +N L +++ NC N+ LP L++L +LQ ++I C +
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536
Query: 1192 LVSFSEGGLPCAKLTRLEISECERLEALP--RGLRNLTCLQHLTIGD 1236
++ K+ + LE P L+ + L L
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVH 582
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-10
Identities = 68/532 (12%), Positives = 154/532 (28%), Gaps = 130/532 (24%)
Query: 590 LACSILHQLLKLQQLRVFTVLNLSRTNIRN-------LPESITKLYNLHTL--------- 633
L +++ +++ ++ + ++L T I N + ++I +L L +
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462
Query: 634 ----------LLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTL-- 681
+ + + NL L ++ N ++ ++P L LQ+L
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522
Query: 682 -CN-----FVVGNDRGSRLRELKFLMHLRGTLDIS--NLENVKHVGDAKEAHLSGKKNLK 733
CN + D + ++ + NLE A L L
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYNNLEEFP-----ASASLQKMVKLG 576
Query: 734 VLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTL 793
+L N + + L + ++ + + P + ++ L
Sbjct: 577 LLDCV--HNKV-RHLEA--------FGTNVKLTDLKLDYNQIEEIPEDFC-AFTDQVEGL 624
Query: 794 KFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKE 853
F + + +P++ +S+ + ++F N + +
Sbjct: 625 GFSHNKL-KYIPNIFNAKSVYVMGS----------VDFSYN-------KIGSEGRNI--- 663
Query: 854 WEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPE---RLPALEMFVIQSCEELVVSVM 910
S + + +S +++ E + ++ + +
Sbjct: 664 -------SCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-----LMT 710
Query: 911 SLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQ-----EQQQLCDLS 965
S+P DG L ++ + + + L
Sbjct: 711 SIPENSLKPKDGN-----------------YKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753
Query: 966 CKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVS------FPEV--ALPSKLRL 1017
L + +SY + P LN S L+ IR +P PS L
Sbjct: 754 -YLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS-LIQ 810
Query: 1018 ITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLI 1069
+ I + ++ + E L IL+IA I + P ++ +
Sbjct: 811 LQIGSND-IRKVDEKLT----PQLYILDIADN-PNISIDVTSVCPYIEAGMY 856
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 78/607 (12%), Positives = 164/607 (27%), Gaps = 126/607 (20%)
Query: 608 TVLNLSRTNIRN-LPESITKLYNLHTLLLEDCDRLKTLCADIG--NLIKLHHLKNSNTIS 664
T L+L+ + +P++I +L L L G L + + I
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIR 384
Query: 665 LQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLR-GTLDISNLENVKHVGDAKE 723
+ + L +R ++ +K + I NL N
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444
Query: 724 AHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPIWLG 783
L L+++ A + F + + + +
Sbjct: 445 QRL---TKLQIIYF--ANSPFTYDNIAVDWEDANSD-----------YAKQYENEELSWS 488
Query: 784 DSSLSKLVTLKFQYCGMCTSLP-SVGQLRSLKHLEVRG--MSGVKRLSLEFYGNDSPIPF 840
+L L ++ C T LP + L L+ L + + + + +
Sbjct: 489 --NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA----AQLKADWTRLA- 541
Query: 841 PCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQ 900
+ + PK++ ++ L PA
Sbjct: 542 -----------------------DDEDTGPKIQIFYMGYN-NLEE-----FPASASL--- 569
Query: 901 SCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEE---EQE 957
+ L K + + G L L + E+
Sbjct: 570 ---------QKMVKLGLLDCVHNK----------VRHLEAFGTNVKLTDLKLDYNQIEEI 610
Query: 958 QQQLCDLSCKLEYLGLSYCQGLVTLPQ--SLLNLSSLREIYIRSCSSLVSFPEVALPSK- 1014
+ C + ++E LG S+ + L +P + ++ + + + S S
Sbjct: 611 PEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMD 668
Query: 1015 ----LRLITIW-DCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLI 1069
+ T+ ++ P T S + + ++ +T I L K
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTEL-FATGSPISTIILSNNL-MTSIPENSL--KPKDGNY 724
Query: 1070 FDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLF-SKN---GLPATLESLE 1125
+ + T+ + ++ TS L + P L+ + S N P +
Sbjct: 725 KNTYLLTTIDL-------RFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS- 775
Query: 1126 VGNLPQSLKFLDVWECPKL------ESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLC 1179
LK + + SL + IG+ +++ + L
Sbjct: 776 -----SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL--TP 827
Query: 1180 QLQRISI 1186
QL + I
Sbjct: 828 QLYILDI 834
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 3e-10
Identities = 75/566 (13%), Positives = 159/566 (28%), Gaps = 106/566 (18%)
Query: 871 KLRELHISRCSKLRGTLPE---RLPALEMFVIQSC-EELVVSVMSLPALCKFKIDGCKKV 926
++ L ++ +G +P+ +L L++ + E + + L + K
Sbjct: 324 RVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382
Query: 927 VWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLS-CKLEYLGLSYCQ-GLVTLPQ 984
+ K +L E + + S L+ + + + +
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442
Query: 985 SLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEIL 1044
++ L+ L+ IY + F + + ++ +W L +
Sbjct: 443 AIQRLTKLQIIYFANSP----FTYDNIAVDWEDANSDYAKQYENEELSW--SNLKDLTDV 496
Query: 1045 NIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGR 1104
+ C ++T + P ++D +++L + S++
Sbjct: 497 ELYNCPNMTQL-----PDF-----LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546
Query: 1105 CPSLTCL-FSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVID-I 1162
P + N L S + + L LD +N + ++
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMV-KLGLLD-------------CVHN-KVRHLEAF 591
Query: 1163 GNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPR- 1221
G L L L Q++ I C + L S +L+ +P
Sbjct: 592 GTNVKLTDL--KLDY-NQIEEIPEDFCAFTDQ----------VEGLGFSHN-KLKYIPNI 637
Query: 1222 -GLRNLTCLQHLTIGD----VLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGG 1276
+++ + + +D N ++ + + K E G
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697
Query: 1277 GL-------NRFSSLQQLRIRGRDQDVVSFPPEEDIGLG---LGTTLP---LPATLTYLV 1323
+ N +S+ + ++ +D + + I L L T+L TL YL
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLS 756
Query: 1324 IADLPN--LERLSSSIFYHQNLTKLKL-------------------CNCPKLKY------ 1356
D+ + L + CP L
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816
Query: 1357 ----FPEKGLPASLLRLEISGCPLIE 1378
EK P L L+I+ P I
Sbjct: 817 DIRKVDEKLTP-QLYILDIADNPNIS 841
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 7e-10
Identities = 78/648 (12%), Positives = 162/648 (25%), Gaps = 160/648 (24%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRL 641
L+ + + +L +L+V L+ +
Sbjct: 330 LAGFG---AKGRVPDAIGQLTELKV---LSFGTHSETVSGRLFG---------------D 368
Query: 642 KTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLM 701
+ L D+ K + + L +L L + + N +++ +
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQ----RLNLSDLLQDAINRNPEMKPIKKDSRI- 423
Query: 702 HLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKP 761
L+ I NL N L L+++ A + F + +
Sbjct: 424 SLK-DTQIGNLTNRITFISKAIQRL---TKLQIIYF--ANSPFTYDNIAVDWEDANSD-- 475
Query: 762 HQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLP-SVGQLRSLKHLEVRG 820
+ + +L L ++ C T LP + L L+ L +
Sbjct: 476 ---------YAKQYENEELSWS--NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524
Query: 821 --MSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHIS 878
+ + + + + + PK++ ++
Sbjct: 525 NRGISA----AQLKADWTRLA------------------------DDEDTGPKIQIFYMG 556
Query: 879 RCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLI 938
L PA + L K + +
Sbjct: 557 YN-NLEE-----FPASASL------------QKMVKLGLLDCVHNK----------VRHL 588
Query: 939 LHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLL-NLSSLREIYI 997
G L L L Y Q + +P+ + +
Sbjct: 589 EAFGTNVKLT---------------------DLKLDYNQ-IEEIPEDFCAFTDQVEGLGF 626
Query: 998 RSCSSLVSFPEVALPSKLRLITIWDCE--ALKSLPEAWMCETNS----SLEILNIAGCSS 1051
L P + + ++ D + S C + + + ++
Sbjct: 627 SHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE- 684
Query: 1052 LTYITGVQLPPSLKLLLIFDCDSIRTLTVEE-GIQSSSSSRYTSSLLEHLVIGRCPSLTC 1110
I P L I T+ + + S + LT
Sbjct: 685 ---IQK--FPTE----LFATGSPISTIILSNNLMTSIPENSLKPKDGN---YKNTYLLTT 732
Query: 1111 L-FSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDI------G 1163
+ N L + + LP L +DV S + N++ L+ I
Sbjct: 733 IDLRFNKLTSLSDDFRATTLP-YLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAE 790
Query: 1164 NCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEIS 1211
L+ P+G+ L ++ I ++ E P +L L+I+
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLTP--QLYILDIA 835
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-10
Identities = 94/582 (16%), Positives = 180/582 (30%), Gaps = 107/582 (18%)
Query: 608 TVLNLSRTNIRNL-PESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLK-NSNTISL 665
L+LS +R+L S L L L C+ +L L L N +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--PI 88
Query: 666 QEMPLR-FGKLTCLQTLCNFVVGND-RGSRLRELKFLMHLRGTLDIS-NLENVKHVGDAK 722
Q + L F L+ LQ L V + + L L+ L+++ NL + +
Sbjct: 89 QSLALGAFSGLSSLQKL--VAVETNLASLENFPIGHLKTLK-ELNVAHNLIQSFKLPEY- 144
Query: 723 EAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQ---NLEEFCINGYRGTKFP 779
S NL+ L L + N + T+ RVL + +L +N
Sbjct: 145 ---FSNLTNLEHLDL--SSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNF------- 191
Query: 780 IWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIP 839
I G +L L + ++ ++ L LEV + + +
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 840 FPCLETLHFEDMK-EWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFV 898
L L E+ + + ++ + + + ER+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT------IERVKDFSYN- 303
Query: 899 IQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSL------VA 952
+ L + K+ K++ + S G P+L+ L ++
Sbjct: 304 -FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLS 360
Query: 953 EEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALP 1012
+ Q + L+YL LS+ ++T+ + L L L + +
Sbjct: 361 FKGCCSQSDFGTT-SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS------------ 406
Query: 1013 SKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDC 1072
L + + SL +L L+I+ +
Sbjct: 407 ---NLKQMSEFSVFLSLR---------NLIYLDISHTH----TRV--AFNG----IFNGL 444
Query: 1073 DSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNGLPATLESLEVGNLPQ 1131
S+ L + + + + + L + +LT L S+ L L +L
Sbjct: 445 SSLEVLKM-------AGNSFQENFLPDI-FTELRNLTFLDLSQCQL-EQLSPTAFNSLS- 494
Query: 1132 SLKFLDVWECPKLESIAERLNNN--TSLEVIDIGNCENLKIL 1171
SL+ L+ +++N SL+ +L++L
Sbjct: 495 SLQVLN-------------MSHNNFFSLDTFPYKCLNSLQVL 523
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 6e-07
Identities = 99/614 (16%), Positives = 176/614 (28%), Gaps = 137/614 (22%)
Query: 547 RNLRHLS----YIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQ 602
L+ L I+ DG + + L L+ N LA L LQ
Sbjct: 52 PELQVLDLSRCEIQTIEDGA--YQSLSHLSTLI------LTGNPIQSLALGAFSGLSSLQ 103
Query: 603 QLRVFTVLNLSRTNIRNL-PESITKLYNLHTLLLEDCDRLKTL--CADIGNLIKLHHLK- 658
L TN+ +L I L L L + +++ NL L HL
Sbjct: 104 ------KLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDL 156
Query: 659 NSNTISLQEMPLRFGKLTCLQTLC-------NFVVGNDRGSRLRELKFLMHLRGTLDISN 711
+SN I L + L N + G+ +E++ L + N
Sbjct: 157 SSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLH-----KLTLRN 209
Query: 712 LENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCIN 771
+ +V L+ L+V L + + + + L+ L + +EEF +
Sbjct: 210 NFDSLNVMKTCIQGLA---GLEVHRLVLGEFRNEGNLEKFDKSALEGL-CNLTIEEFRLA 265
Query: 772 GYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEF 831
I + L+ + + + + +HLE+
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCK--------- 315
Query: 832 YGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERL 891
+G + L+ L F K G++ P L L +SR
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKG-------GNAFSEVDLPSLEFLDLSRNG---------- 358
Query: 892 PALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLV 951
+ S +L + + + + G L+ L
Sbjct: 359 -------LSFKGCCSQSDFGTTSLKYLDLSFN---------GVITMSSNFLGLEQLEHLD 402
Query: 952 A-----EEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSF 1006
++ E L L YL +S+ V LSSL + +
Sbjct: 403 FQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN------ 455
Query: 1007 PEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKL 1066
+ + L +L L+++ C + L P+
Sbjct: 456 ---------SFQENFLPDIFTELR---------NLTFLDLSQCQ----LEQ--LSPT--- 488
Query: 1067 LLIFDCDSIRTLTVEE-GIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNGLPATLESL 1124
S++ L + S + SL L +S N + T +
Sbjct: 489 -AFNSLSSLQVLNMSHNNFFSLDTF----------PYKCLNSLQVLDYSLNHI-MTSKKQ 536
Query: 1125 EVGNLPQSLKFLDV 1138
E+ + P SL FL++
Sbjct: 537 ELQHFPSSLAFLNL 550
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 83/475 (17%), Positives = 136/475 (28%), Gaps = 86/475 (18%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRL 641
LS+N + C+ L L ++ L + L+LS + + K LH L L
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNL--SLDLSLNPMNFIQPGAFKEIRLHKLTL------ 207
Query: 642 KTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLM 701
+N SL M L L+ V+G R E
Sbjct: 208 -----------------RNNFDSLNVMKTCIQGLAGLEVH-RLVLGEFRNEGNLEKFDKS 249
Query: 702 HLRG--TLDISN--LENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLD 757
L G L I L + + D + N+ L + + +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL--VSVTIERVKDFSYNFGWQ 307
Query: 758 MLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLE 817
L L L L L F + S L SL+ L+
Sbjct: 308 HL----ELVNCKFGQ---------FPTLKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLD 353
Query: 818 VRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHI 877
+ LS + + S L+ L S G +L L
Sbjct: 354 LSRN----GLSFKGCCSQSDFGTTSLKYLDLSFNG------VITMSSNFLGLEQLEHLDF 403
Query: 878 SRCSKLRGTLPERLPALEMFV-IQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLG 936
L+ +F+ +++ L +S +G +
Sbjct: 404 QHS-NLKQMSE-----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV-------- 449
Query: 937 LILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTL-PQSLLNLSSLREI 995
L + G + Q + +L L +L LS CQ L L P + +LSSL+ +
Sbjct: 450 --LKMAGN-SFQENFLPDI-----FTELR-NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL 499
Query: 996 YIRSCSSLVSFPEVALPSKLRLITIWDCEA--LKSLPEAWMCETNSSLEILNIAG 1048
+ + S L + D + + + + SSL LN+
Sbjct: 500 NMSHN-NFFSLDTFPYKCLNSLQVL-DYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 58/344 (16%), Positives = 105/344 (30%), Gaps = 65/344 (18%)
Query: 941 IGGCPNLQSLVAE----EEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIY 996
P LQ L + E LS L L L+ + LSSL+++
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 997 IRSCSSLVSFPEVALP--SKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTY 1054
+L S + L+ + + ++S ++LE L+++ +
Sbjct: 107 AVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQS 163
Query: 1055 ITG------VQLPPSLKLL------------LIFDCDSIRTLTVEEGIQSSSSSRYTSSL 1096
I Q+P L F + LT+ S + +
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223
Query: 1097 LEHLVIGRCPSLTCLFSKNGLPAT-------LESLEVGNLPQSLKFLDVWECPKLESIAE 1149
L L + R L ++ L L +L + L +LD L+ I +
Sbjct: 224 LAGLEVHRL-VLGEFRNEGNLEKFDKSALEGLCNLTIEEF--RLAYLDY----YLDDIID 276
Query: 1150 RLNNNTSLEVIDIGNCENLKILP----SGLHNL----CQLQRISIWCCGNLVS------- 1194
N T++ + + ++ G +L C+ + +L
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336
Query: 1195 ----FSEGGLPCAKLTRLEIS--ECERLEALPRGLRNLTCLQHL 1232
FSE LP L L++S + T L++L
Sbjct: 337 GGNAFSEVDLP--SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 5e-09
Identities = 65/305 (21%), Positives = 102/305 (33%), Gaps = 46/305 (15%)
Query: 941 IGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSC 1000
+ L+ + + ++L DL LE++ Q L LP L NL L IY +
Sbjct: 149 LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN 205
Query: 1001 SSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQL 1060
S L P+ LP L I + L+ LPE L + L L
Sbjct: 206 S-LKKLPD--LPLSLESIVAGNNI-LEELPELQNL---PFLTTIYADNNL-LK-----TL 252
Query: 1061 PPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKN---- 1115
P L + + E QS + + ++ L P+L L S N
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRS 311
Query: 1116 --GLPATLESLEVGN--------LPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNC 1165
LP +LE L V N LP L+ L L + E +L+ + +
Sbjct: 312 LCDLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPELP---QNLKQLHVEYN 367
Query: 1166 ENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRN 1225
L+ P ++ L+ +L E L +L + L P +
Sbjct: 368 -PLREFPDIPESVEDLR-----MNSHLAEVPEL---PQNLKQLHVETN-PLREFPDIPES 417
Query: 1226 LTCLQ 1230
+ L+
Sbjct: 418 VEDLR 422
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 7e-08
Identities = 89/450 (19%), Positives = 143/450 (31%), Gaps = 112/450 (24%)
Query: 967 KLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCS------------SLVSFPEVALPSK 1014
++ + P + +R C L S PE LP
Sbjct: 35 SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE--LPPH 92
Query: 1015 LRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDS 1074
L + C +L LPE ++ SL + N +L ++ LPP L+ L + +
Sbjct: 93 LESLVA-SCNSLTELPEL--PQSLKSLLVDNN----NLKALS--DLPPLLEYLGVSNNQ- 142
Query: 1075 IRTLTVEEGIQSSSSSRYTSSLLEHL-VIGRCPSLTCL-FSKNGLPATLESLEVGNLPQS 1132
LE L + L + N L ++ +LP S
Sbjct: 143 ----------------------LEKLPELQNSSFLKIIDVDNNSLK------KLPDLPPS 174
Query: 1133 LKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNL-------CQLQRI- 1184
L+F+ +LE + E L N L I N +LK LP +L L+ +
Sbjct: 175 LEFIAAGNN-QLEELPE-LQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELP 231
Query: 1185 SIWCCGNLVSFSEGG-----LP--CAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDV 1237
+ L + LP L L + + L LP ++LT L
Sbjct: 232 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN-YLTDLPELPQSLTFLDVSENIFS 290
Query: 1238 LSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVV 1297
E LP NL+ LN + + SL++L + + ++
Sbjct: 291 GLSE--------LPPNLYYLNASSNEIRSLCDLP----------PSLEELNV--SNNKLI 330
Query: 1298 SFPPEEDIG----LGLG----TTLP-LPATLTYLVIADLPNLERLSSSIFYHQNLTKLKL 1348
P L +P LP L L + L ++ L++
Sbjct: 331 ELPAL--PPRLERLIASFNHLAEVPELPQNLKQLHVEYN-PLREFPDIPE---SVEDLRM 384
Query: 1349 CNCPKLKYFPEKGLPASLLRLEISGCPLIE 1378
+ L PE LP +L +L + PL E
Sbjct: 385 NS--HLAEVPE--LPQNLKQLHVETNPLRE 410
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 80/444 (18%), Positives = 133/444 (29%), Gaps = 93/444 (20%)
Query: 603 QLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLI---------- 652
+N+ +P + + + + G
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68
Query: 653 ---KLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLREL-KFLMHLRGTLD 708
+ H L+ +N L +P L L CN L EL + L+ +L
Sbjct: 69 LDRQAHELELNNL-GLSSLPELPPHLESLVASCN---------SLTELPELPQSLK-SLL 117
Query: 709 ISNLENVKHVGDAKEAHLSGK-KNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEE 767
+ N LS L+ L + N ++PE L+ L+
Sbjct: 118 VDNNNLKA---------LSDLPPLLEYLGVS--NNQL-EKLPE--------LQNSSFLKI 157
Query: 768 FCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRL 827
++ K P L + + LP + L L + L
Sbjct: 158 IDVDNNSLKKLP-----DLPPSLEFIAAGNNQL-EELPELQNLPFLTAIYADN----NSL 207
Query: 828 SLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTL 887
P LE++ + E +P E++ P L ++ L+ TL
Sbjct: 208 K------KLPDLPLSLESIVAGNNILEE--LP-----ELQNLPFLTTIYADNN-LLK-TL 252
Query: 888 PERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNL 947
P+ P+LE ++ + LP L + PNL
Sbjct: 253 PDLPPSLEALNVRDN-----YLTDLPEL----PQSLTFL----DVSENIFSGLSELPPNL 299
Query: 948 QSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFP 1007
L A + + LCDL LE L +S + L+ LP L L S + L P
Sbjct: 300 YYLNASSNE-IRSLCDLPPSLEELNVSNNK-LIELPALPPRLERLIA----SFNHLAEVP 353
Query: 1008 EVALPSKLRLITIWDCEALKSLPE 1031
E LP L+ + + L+ P+
Sbjct: 354 E--LPQNLKQLHVEYNP-LREFPD 374
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 87/533 (16%), Positives = 163/533 (30%), Gaps = 129/533 (24%)
Query: 621 PESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQT 680
P +++ + L L + + N+ N+ + + P G+ +
Sbjct: 5 PRNVSNTFLQ--EPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 681 LCNFVVGNDRGSRLRELKFLMHLRGTLDISN--LENVKHVGDAKEAHLSGKKNLKVLLLR 738
RLR+ L+++N L ++ +L+ L+
Sbjct: 63 S-----------RLRDCLDR-QAH-ELELNNLGLSSLP----------ELPPHLESLVA- 98
Query: 739 WARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYC 798
+ NS + +PE Q+L+ ++ L L
Sbjct: 99 -SCNSL-TELPEL----------PQSLKSLLVDNNNLKALS-----DLPPLLEYLGVSNN 141
Query: 799 GMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWI 858
+ LP + LK ++V S +K+L P P LE + + + E +
Sbjct: 142 QL-EKLPELQNSSFLKIIDVDNNS-LKKL---------PDLPPSLEFIAAGNNQL--EEL 188
Query: 859 PRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKF 918
P E++ P L ++ L+ LP+ +LE V +
Sbjct: 189 P-----ELQNLPFLTAIYADNN-SLK-KLPDLPLSLESIVAGNNI--------------- 226
Query: 919 KIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQG 978
L + + P L ++ A+ + L DL LE L +
Sbjct: 227 ----------------LEELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNY- 268
Query: 979 LVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETN 1038
L LP+ +L+ L E LP L + E ++SL +
Sbjct: 269 LTDLPELPQSLTFLDVSEN----IFSGLSE--LPPNLYYLNASSNE-IRSLCDLP----- 316
Query: 1039 SSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLE 1098
SLE LN++ L +LP L V E Q+ + L
Sbjct: 317 PSLEELNVSNNK-LI-----ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLR 370
Query: 1099 HL--VIGRCPSLTCLFSKNGLPATLESLEVGNL-----------PQSLKFLDV 1138
+ L +P ++L+ ++ P+S++ L +
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRM 423
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 8e-09
Identities = 85/550 (15%), Positives = 168/550 (30%), Gaps = 105/550 (19%)
Query: 565 FAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESI 624
F ++ L L S + + L L+ +L+L + I L
Sbjct: 44 FPFLEQLQLLE--LG---SQYTPLTIDKEAFRNLPNLR------ILDLGSSKIYFLHPDA 92
Query: 625 -TKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLK----NSNTISLQEMPLRFGKLTCLQ 679
L++L L L C L G L L + N I + FGKL L+
Sbjct: 93 FQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151
Query: 680 TL---CNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLL 736
++ N + L L+ +L ++L + V K + L++L
Sbjct: 152 SIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 737 LRWARNS------FDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPIW-LGDSSLSK 789
+ + F + + +++ L + ++ + + S
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAH---HIMGAGFGFHNIKDPDQNTFAGLARSS 267
Query: 790 LVTLKFQYCGMCTSLPSVGQLRSLKHLEV----------------RGMSGVKRLSLEF-- 831
+ L + + SL S +LK L+V G+ ++ L+L +
Sbjct: 268 VRHLDLSHGFV-FSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 832 ---YGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLP 888
+ + P + + + I Q + KL+ L +
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNH-----IAIIQDQTFKFLEKLQTLDLRDN-------- 372
Query: 889 ERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQ 948
L + S ++ +S L L K + + + ++L ++ + P+LQ
Sbjct: 373 -ALTTIHFI--PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429
Query: 949 SLVAEEEQ----EQQQLCDLSCKLEYLGLSYCQ-----GLVTLPQSLLNLSSLREIYIRS 999
L+ + + Q + LE L L LS L+ +Y+
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489
Query: 1000 CSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQ 1059
+ L +L L++ LT ++
Sbjct: 490 NY----------------LNSLPPGVFSHLT---------ALRGLSLNSN-RLTVLSHND 523
Query: 1060 LPPSLKLLLI 1069
LP +L++L I
Sbjct: 524 LPANLEILDI 533
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 65/508 (12%), Positives = 147/508 (28%), Gaps = 51/508 (10%)
Query: 943 GCPNLQSLVAEEEQEQQQLCDLSC----KLEYLGLSYCQGLVTLPQSLL-NLSSLREIYI 997
LQ L + + + L L L + + L L L E+ +
Sbjct: 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRL 104
Query: 998 RSCS-SLVSFPEVALP--SKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTY 1054
C S + L + + + ++SL +SL+ ++ + +
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN-QIFL 162
Query: 1055 ITGVQLPP-SLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFS 1113
+ +L P K L F + + + + + +LE L + T +
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN-GWTVDIT 221
Query: 1114 KNGLPATLESLEVGNL--PQSLKFLDVWECPKLESIAERL---NNNTSLEVIDIGNCENL 1168
N + + +L + + ++ + +S+ +D+ +
Sbjct: 222 GN-FSNAISKSQAFSLILAHHIMGAG-FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279
Query: 1169 KILPSGLHNLCQLQRISIWCCGNLVSFSEGGL--PCAKLTRLEISECERLEALPRG-LRN 1225
+ L L+ +++ N ++ L L +S L L
Sbjct: 280 SLNSRVFETLKDLKVLNL--AYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYG 336
Query: 1226 LTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDN--MKSWKSFIEWGQGGGGLNRFSS 1283
L + ++ + + L L +L++ + + + N+ +
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395
Query: 1284 LQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYH--Q 1341
L ++ + + E L +P L L++ S
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVP---HLQILILNQN-RFSSCSGDQTPSENP 451
Query: 1342 NLTKLKLCNCPKLKYFPEKGLPA-------SLLRLEISGCPL--IEERYIKDGGQYRHL- 1391
+L +L L L+ E L L L ++ L + R L
Sbjct: 452 SLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 1392 -----LTYIPCIIINGRPVDLDLKQRRI 1414
LT + + LD+ + ++
Sbjct: 511 LNSNRLTVLSHNDLPANLEILDISRNQL 538
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 94/540 (17%), Positives = 174/540 (32%), Gaps = 108/540 (20%)
Query: 568 FYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVF------------------TV 609
+ + +L T ++L+ N LA L LQ+L
Sbjct: 72 YQSLSHLST---LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 610 LNLSRTNIR--NLPESITKLYNLHTLLLEDCDRLKTLCA-DIGNLIKLHHLKNSNTIS-- 664
LN++ I+ LPE + L NL L L +++++ D+ L ++ L S +S
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 665 -LQEMPLRFGKLTCLQTL---CNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGD 720
+ + K L L NF N + ++ L L R L + N ++
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR--LVLGEFRNEGNLEK 245
Query: 721 AKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPI 780
++ L G NL + R A + ++D+ N+ F + +
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDY------YLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 781 WLGDSSLSKLVTLKFQYCGMC-----------------TSLPSVGQLRSLKHLEVRG--M 821
+ + L + ++ + S L SL+ L++ +
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359
Query: 822 SGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCS 881
S S +G L+ L + G +L L
Sbjct: 360 SFKGCCSQSDFGT------TSLKYLDLSFNG--VITMSSN----FLGLEQLEHLDFQHS- 406
Query: 882 KLRGTLPERLPALEMFV-IQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILH 940
L+ ++ +F+ +++ L +S +G + +L
Sbjct: 407 NLK-----QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE----------VLK 451
Query: 941 IGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLL-NLSSLREIYIRS 999
+ G + Q + +L L +L LS CQ L L + +LSSL+ + + S
Sbjct: 452 MAGN-SFQENFLPDI-----FTELR-NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMAS 503
Query: 1000 CSSLVSFPEVALPSKLRLITIW--------DCEALKSLPEAWMCETNSSLEILNIAGCSS 1051
L S P+ L IW C + L W+ + + + A CS
Sbjct: 504 N-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR-WLNKNS--QKEQGSAKCSG 559
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 109/604 (18%), Positives = 194/604 (32%), Gaps = 134/604 (22%)
Query: 608 TVLNLSRTNIRNLPE-SITKLYNLHTLLLEDCDRLKTLCAD-IGNLIKLHHLK-NSNTIS 664
L+LS +R+L S L L L C ++T+ +L L L N
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN--P 87
Query: 665 LQEMPLR-FGKLTCLQTLCNFVVGNDRGSRLREL-----KFLMHLRGTLDIS-NLENVKH 717
+Q + L F L+ LQ L V L L L L+ L+++ NL
Sbjct: 88 IQSLALGAFSGLSSLQKL--VAVET----NLASLENFPIGHLKTLK-ELNVAHNLIQSFK 140
Query: 718 VGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTK 777
+ + S NL+ L L + N S + T+ RVL + + +N
Sbjct: 141 LPEY----FSNLTNLEHLDL--SSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNF-- 191
Query: 778 FPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSP 837
I G +L L + ++ ++ L LE V RL L + N+
Sbjct: 192 --IQPGAFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGLE------VHRLVLGEFRNEGN 242
Query: 838 IP------FPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERL 891
+ L L E+ + ++ I+ F L + + R+
Sbjct: 243 LEKFDKSALEGLCNLTIEEFR--LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE---RV 297
Query: 892 PALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSL- 950
+ L + K+ K++ + S G P+L+ L
Sbjct: 298 KDFSYN--FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLD 353
Query: 951 -----VAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVS 1005
++ + Q + L+YL LS+ ++T+ + L L L + +
Sbjct: 354 LSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS----- 406
Query: 1006 FPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLK 1065
L + + SL +L L+I+
Sbjct: 407 ----------NLKQMSEFSVFLSLR---------NLIYLDISHTH--------------- 432
Query: 1066 LLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLF-SKNGLPATLESL 1124
+ + + SL L + N
Sbjct: 433 ------------------TRV----------AFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 1125 EVGNLPQSLKFLDVWECPKLESIAER-LNNNTSLEVIDIGNCENLKILPSG-LHNLCQLQ 1182
L +L FLD+ +C +LE ++ N+ +SL+V+++ + LK +P G L LQ
Sbjct: 465 IFTELR-NLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQ 521
Query: 1183 RISI 1186
+I +
Sbjct: 522 KIWL 525
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 97/542 (17%), Positives = 167/542 (30%), Gaps = 102/542 (18%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLP-ESITKLYNLHTLLLED--- 637
LS N +L +LQ VL+LSR I+ + + L +L TL+L
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQ------VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 638 ----------CDRLKTLCAD-----------IGNLIKLHHLK-NSNTISLQEMPLRFGKL 675
L+ L A IG+L L L N I ++P F L
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 676 TCLQTL---CNFVVGNDRGSRLRELKFLMHLRGTLDISN--------------------L 712
T L+ L N + LR L + L +LD+S L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 713 ENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCING 772
N + + + G L+V L + + + + L+ L + +EEF +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL-CNLTIEEFRLAY 266
Query: 773 YRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFY 832
I + L+ + + + + +HLE+ +
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCK---------F 316
Query: 833 GNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLP---- 888
G + L+ L F K G++ P L L +SR
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKG-------GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 889 ERLPALEMFVIQSCE--ELVVSVMSLPALCKFKIDGCK--KVVWRSTTKHLG--LILHIG 942
+L+ + + + + L L ++ S L + L I
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 943 GCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQ-GLVTLPQSLLNLSSLREIYIRSCS 1001
+ + LS LE L ++ LP L +L + + C
Sbjct: 430 HT-HTRVA------FNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC- 480
Query: 1002 SLVSFPEVALPSKLRLITIW-DCEALKSLPEAWMCETNSSLEILNIAG------CSSLTY 1054
L A S L + LKS+P+ + +SL+ + + C + Y
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCPRIDY 539
Query: 1055 IT 1056
++
Sbjct: 540 LS 541
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 85/542 (15%), Positives = 154/542 (28%), Gaps = 137/542 (25%)
Query: 565 FAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQQLRV------------------ 606
F+G ++ L + L + L L++L V
Sbjct: 96 FSGLSSLQKLV------AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 607 -FTVLNLSRTNIRNLP-ESITKLYNLHTLLLE---DCDRLKTLCADIGNLIKLHHLK-NS 660
L+LS I+++ + L+ + L L + + + I+LH L +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209
Query: 661 NTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGD 720
N SL M L L+ L + N ++
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVH------------------------RLVLGEFRNEGNLEK 245
Query: 721 AKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPI 780
++ L G NL + R A + ++D+ N+ F + +
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDY------YLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 781 WLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIPF 840
+ + L + ++ T +L+SLK L G S +
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPT-----LKLKSLKRLTFTSNKGGNAFSE--------VDL 346
Query: 841 PCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQ 900
P LE L + S G L+ L +S +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDF---GTTSLKYLDLSFNG-----------------VI 386
Query: 901 SCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQ 960
+ + + L L NL+ + E
Sbjct: 387 TMSSNFLGLEQL------------------------EHLDFQHS-NLKQM-----SEFSV 416
Query: 961 LCDLSCKLEYLGLSYCQGLVTLPQSLL-NLSSLREIYIRSCSSLVSFPEVALP--SKLRL 1017
L L YL +S+ + LSSL + + S +F L
Sbjct: 417 FLSLR-NLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 1018 ITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLP--PSLKLLLI----FD 1071
+ + C+ L+ L + SSL++LN+A L + SL+ + + +D
Sbjct: 475 LDLSQCQ-LEQLSPTAF-NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Query: 1072 CD 1073
C
Sbjct: 532 CS 533
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-08
Identities = 71/499 (14%), Positives = 141/499 (28%), Gaps = 114/499 (22%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESI---TKLYNLHTLLLEDC 638
L+N G L L +R L+LS + + + K NL L L
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRN---LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Query: 639 DRLKTLCAD-IGNLIKLHHLK-NSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRE 696
L + D L +L + N I L ++ L
Sbjct: 259 -NLNVVGNDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYL--------------- 301
Query: 697 LKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVL 756
+L+ + ++ + + K L+ L + N
Sbjct: 302 -----NLKRSFTKQSISL-ASLPKIDDFSFQWLKCLEHLNM--EDNDIPGIKS------- 346
Query: 757 DMLKPHQNLEEFCINGYRGTKFPI---WLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSL 813
+M NL+ ++ + + + S L L + + + S L
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI-SKIES-DAFSWL 404
Query: 814 KHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLR 873
HLEV L+ N+ + E + G +
Sbjct: 405 GHLEV----------LDLGLNE----------IGQE--------LTGQE---WRGLENIF 433
Query: 874 ELHISRCSKLRGTLP---ERLPALEMFV-----IQSCEELVVSVMSLPALCKFKIDGCKK 925
E+++S K +P+L+ + +++ + L L +
Sbjct: 434 EIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-- 490
Query: 926 VVWRSTTKHLGLI--LHIGGCPNLQSL------------VAEEEQEQQQLCDLSCKLEYL 971
++ I + G L+ L A L LS L L
Sbjct: 491 --------NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHIL 541
Query: 972 GLSYCQGLVTLPQSLL-NLSSLREIYIRSCSSLVSFPEVALPSKLRLITIW-DCEALKSL 1029
L +P + +L L+ I + ++L + P +++ L ++ + S+
Sbjct: 542 NLESNG-FDEIPVEVFKDLFELKIIDL-GLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599
Query: 1030 PEAWMCETNSSLEILNIAG 1048
+ +L L++
Sbjct: 600 EKKVFGPAFRNLTELDMRF 618
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 79/487 (16%), Positives = 149/487 (30%), Gaps = 82/487 (16%)
Query: 941 IGGCPNLQSLVAEE----EQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIY 996
C NL L + + L L LS+ T + + L +L+E+
Sbjct: 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELL 151
Query: 997 IRSCSSLVSFPEVAL----PSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSL 1052
+ + + + L S L+ + + + +K L L +
Sbjct: 152 LSNN-KIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAI-GRLFGLFLNNVQ-- 206
Query: 1053 TYITGVQLPPSLKLLLIFDCDSIRTLTVE----EGIQSSSSSRYTSSLLEHL-------- 1100
+ L L L L SIR L++ +++ + L L
Sbjct: 207 --LGPS-LTEKLCLEL--ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261
Query: 1101 -----VIGRCPSLTCL-FSKN---GLPAT----LESLEVGNLPQSLKFLDVWECPKLESI 1147
P L N L + L ++ NL +S + +
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321
Query: 1148 AERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSE------GGLP 1201
LE +++ + + I + L L+ +S+ + S L
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL--SNSFTSLRTLTNETFVSLA 379
Query: 1202 CAKLTRLEISECERLEALPRG-LRNLTCLQHLTIGD-VLSPERDPEDEDRLPTNLHSLNI 1259
+ L L +++ ++ + L L+ L +G + E ++ L N+ + +
Sbjct: 380 HSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE-NIFEIYL 437
Query: 1260 DNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATL 1319
K + SLQ+L +R V+ +++ PL L
Sbjct: 438 SYNK--YLQLTRNS----FALVPSLQRLMLRR-----VAL---KNVDSSPSPFQPLRN-L 482
Query: 1320 TYLVIAD----------LPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPEKGLPASLLRL 1369
T L +++ L LE+L H NL +L P + KGL L L
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHIL 541
Query: 1370 EISGCPL 1376
+
Sbjct: 542 NLESNGF 548
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 3e-06
Identities = 103/672 (15%), Positives = 199/672 (29%), Gaps = 135/672 (20%)
Query: 608 TVLNLSRTNIRNL-PESITKLYNLHTLLLEDCDRLKTLCAD-IGNLIKLHHLK-NSNTIS 664
TVLNL+ +R L + T+ L +L + + L + L L L N
Sbjct: 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN--E 84
Query: 665 LQEMPLR-FGKLTCLQTL---CNFVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGD 720
L ++ + F T L L N + + K L+ L L + L + K
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FVKQKNLITLD--LSHNGLSSTK---- 137
Query: 721 AKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKF-P 779
+NL+ LLL + N + E + + +L++ ++ + +F P
Sbjct: 138 --LGTQVQLENLQELLL--SNNKI-QALKSEELDIF----ANSSLKKLELSSNQIKEFSP 188
Query: 780 IWLGDSSLSKLVTLKFQYCGMCTSLPSV----GQLRSLKHLEVRGMSGVKRLSLEFYGND 835
++ +L L + SL S+++L + LS
Sbjct: 189 GCF--HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ----LSTTSNTTF 242
Query: 836 SPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRGTLP---ERLP 892
+ + L L + + P+L + ++ L
Sbjct: 243 LGLKWTNLTMLDLSYNN-----LNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLF 296
Query: 893 ALEMFVIQ-SCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHL--------GLILHI-G 942
+ ++ S + +S+ SLP + F K + +HL G+ ++
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL------EHLNMEDNDIPGIKSNMFT 350
Query: 943 GCPNLQSL------VAEEEQEQQQLCDLSC-KLEYLGLSYCQGLVTLPQSLLNLSSLREI 995
G NL+ L + + L+ L L L+ + + L L +
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 996 YIRSCSSLVSFPEVALP--SKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLT 1053
+ + I + + L SL+ L + +
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFAL-VPSLQRLMLRRVA--- 465
Query: 1054 YITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-F 1112
+ V PS +LT L
Sbjct: 466 -LKNVDSSPSP-------------------------------------FQPLRNLTILDL 487
Query: 1113 SKNGLPATLESLEVGNLPQSLKFLD--------VWECPKLESIAERLNNNTSLEVIDIGN 1164
S N + A + + L L+ LD +W+ L + L ++++ +
Sbjct: 488 SNNNI-ANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
Query: 1165 CENLKILPSG-LHNLCQLQRISIWCCGNLVSFSEGGL--PCAKLTRLEIS----ECERLE 1217
+P +L +L+ I + N ++ + L L + +
Sbjct: 546 N-GFDEIPVEVFKDLFELKIIDL--GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
Query: 1218 ALPRGLRNLTCL 1229
RNLT L
Sbjct: 603 VFGPAFRNLTEL 614
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-06
Identities = 104/670 (15%), Positives = 201/670 (30%), Gaps = 139/670 (20%)
Query: 547 RNLRHLS----YIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQ 602
L L I + +K L L +N L+ L
Sbjct: 49 SQLTSLDVGFNTISKLEPEL--CQKLPMLKVLN------LQHNELSQLSDKTFAFCTNLT 100
Query: 603 QLRVFTVLNLSRTNIRNL-PESITKLYNLHTLLLEDCDRLKTLCAD-IGNLIKLHHLK-N 659
+L +L +I+ + K NL TL L L + L L L +
Sbjct: 101 EL------HLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLS 153
Query: 660 SNTIS-LQEMPLRFGKLTCLQTLC---NFVVGNDRGSRLRELKFLMHLRGTLDISNLENV 715
+N I L+ L + L+ L N + G + L L ++N++
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC----FHAIGRLF-GLFLNNVQLG 208
Query: 716 KHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETET-------RVLDMLKPHQNLEEF 768
+ + L+ +++ L L + + T +LD+ N
Sbjct: 209 PSLTEKLCLELAN-TSIRNLSLS--NSQLSTTSNTTFLGLKWTNLTMLDL---SYNN--- 259
Query: 769 CINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSV-GQLRSLKHLEVRGMSGVKRL 827
+N F + L +L +Y + L ++++L ++ + +
Sbjct: 260 -LNVVGNDSF------AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312
Query: 828 SLEFYGNDSPIPF---PCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLR 884
SL F CLE L+ ED IP S G L+ L +S
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDND-----IPGIKSNMFTGLINLKYLSLSNS---- 363
Query: 885 GTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILHIGGC 944
+++ ++ L + K S
Sbjct: 364 -----------FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--------FSWL 404
Query: 945 PNLQSL-VA----EEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRS 999
+L+ L + +E Q+ L + + LSY + L S + SL+ + +R
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463
Query: 1000 C--SSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITG 1057
++ S P + L +L IL+++ + I
Sbjct: 464 VALKNVDSSP----------------SPFQPLR---------NLTILDLSNNN----IAN 494
Query: 1058 VQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNG 1116
+ ++ + + L + + + ++ + + L L NG
Sbjct: 495 --INDD----MLEGLEKLEILDL-QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547
Query: 1117 LPATLESLEVGNLPQSLKFLDVWECPKLESIAER-LNNNTSLEVIDIGN----CENLKIL 1171
+ +L LK +D+ L ++ NN SL+ +++ K+
Sbjct: 548 F-DEIPVEVFKDLF-ELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Query: 1172 PSGLHNLCQL 1181
NL +L
Sbjct: 605 GPAFRNLTEL 614
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 8e-08
Identities = 38/251 (15%), Positives = 81/251 (32%), Gaps = 31/251 (12%)
Query: 966 CKLEYLGLSYCQGLVTLPQSLLN-LSSLREIYIRSCS-SLVSFPEVALPSKLRLITIWDC 1023
+++++ LS V+ +L+ S L+ + + S +A S L + + C
Sbjct: 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152
Query: 1024 EALKSLPEAWMCETNSSLEILNIAGCSSLT----YITGVQLPPSLKLLLIFDCDSIRTLT 1079
+ + S L+ LN++ C T + + ++ L + + L
Sbjct: 153 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY--RKNLQ 210
Query: 1080 VEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFLDVW 1139
+ + + L HL + L + L L+ L +
Sbjct: 211 -KSDLSTLVRR---CPNLVHLDLSDSVMLK--------NDCFQEF--FQLNY-LQHLSLS 255
Query: 1140 ECPKLESIA-ERLNNNTSLEVIDIGNC---ENLKILPSGLHNL----CQLQRISIWCCGN 1191
C + L +L+ + + L++L L +L I+ GN
Sbjct: 256 RCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315
Query: 1192 LVSFSEGGLPC 1202
+ G+ C
Sbjct: 316 KKNQEIWGIKC 326
|
| >3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Length = 115 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 9e-08
Identities = 21/114 (18%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 13 IELLVDKLTSKGLQFFAHQEQIQADLVKWKRMLVKIKAVLDDAEEKQR--TDQSVKMWLG 70
I L+ KL + F + ++ ++ + L + A L E R D K+W
Sbjct: 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWAD 62
Query: 71 DLHNLAFDVEDLLEEFQTEAFRRKLLLGEPAAAAHDHDQTSSSRRSTTTKFRKL 124
++ L++ +ED++++F L+ + + ++++ + TT +K+
Sbjct: 63 EVRELSYVIEDVVDKF--------LVQVDGIKSDDNNNKFKGLMKRTTELLKKV 108
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 60/357 (16%), Positives = 114/357 (31%), Gaps = 60/357 (16%)
Query: 941 IGGCPNLQSLVAEEEQ-EQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRS 999
I L L+ L + L YL + L L + L+ L + +
Sbjct: 60 IEKLTGLTKLICTSNNITTLDLSQNT-NLTYLACDSNK-LTNLD--VTPLTKLTYLNCDT 115
Query: 1000 CSSLVSFPEVALPSKLRL------ITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLT 1053
L P L +T D L E C N + L++ + LT
Sbjct: 116 NK-LTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELD-CHLNKKITKLDVTPQTQLT 173
Query: 1054 Y-------ITGVQLPPSLKLLLIFDCDS--IRTLTVEEGIQSSSSS----RYTSSLLEHL 1100
IT + + KLL +CD+ I L + + + +S+ L +
Sbjct: 174 TLDCSFNKITELDVS-QNKLLNRLNCDTNNITKLDL-----NQNIQLTFLDCSSNKLTEI 227
Query: 1101 VIGRCPSLTCLF-SKNGLPATLESLEVGNLPQ---------SLKFLDVWECPKLESIAER 1150
+ LT S N L L+V L + L +D+ +L +
Sbjct: 228 DVTPLTQLTYFDCSVNPL----TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF--Q 281
Query: 1151 LNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEI 1210
++ +D+ + L +L + + + LV L +LT L++
Sbjct: 282 AEGCRKIKELDVTHNTQLYLL--DCQA-AGITELDLSQNPKLVYLY---LNNTELTELDV 335
Query: 1211 SECERLEALP------RGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDN 1261
S +L++L + ++ + L + ++ L N ++ +
Sbjct: 336 SHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 54/401 (13%), Positives = 115/401 (28%), Gaps = 108/401 (26%)
Query: 968 LEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALK 1027
+ + T S L++L + SS+ + + L + +
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDC-HNSSITDMTGIEKLTGLTKLICTSNN-IT 77
Query: 1028 SLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSS 1087
+L + N++L L +T + + L L +CD+ +
Sbjct: 78 TLDLS----QNTNLTYLACDSNK----LTNLDVT-PLTKLTYLNCDTNK----------- 117
Query: 1088 SSSRYTSSLLEHLVIGRCPSLTCLF-SKNGLPATLESLEVGNLP----------QSLKFL 1136
L L + + P LT L ++N L ++V + + + L
Sbjct: 118 ---------LTKLDVSQNPLLTYLNCARNTL----TEIDVSHNTQLTELDCHLNKKITKL 164
Query: 1137 DVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFS 1196
DV +L ++ + N + +D+ + L L + ++ + L
Sbjct: 165 DVTPQTQLTTL--DCSFN-KITELDVSQNKLLNRL--NCDT-NNITKLDLNQNIQLTFLD 218
Query: 1197 EGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHS 1256
KLT ++++ +L + + + + + L +
Sbjct: 219 ---CSSNKLTEIDVTPLTQLTYF-----DCSVNPLTEL------------DVSTLSKLTT 258
Query: 1257 LNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLP 1316
L+ I+ L + L + G +
Sbjct: 259 LHCIQTD--LLEID-------LTHNTQLIYFQAEGCRK---------------------- 287
Query: 1317 ATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYF 1357
+ L + L L +T+L L PKL Y
Sbjct: 288 --IKELDVTHNTQLYLLD---CQAAGITELDLSQNPKLVYL 323
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 69/442 (15%), Positives = 132/442 (29%), Gaps = 98/442 (22%)
Query: 574 LRTFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTL 633
+ ++ + ++ L L T L+ ++I ++ I KL L L
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATL---------TSLDCHNSSITDMTG-IEKLTGLTKL 69
Query: 634 LLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTL---CNFVVGNDR 690
+ + TL D+ L +L + L + LT L L N + D
Sbjct: 70 ICTSN-NITTL--DLSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLD- 122
Query: 691 GSRLRELKFLMHLRG----TLDISNLENVKHVGDA-----KEAHLSGKKNLKVLLLRWAR 741
S+ L +L + +D+S+ + + + ++ + L L +
Sbjct: 123 VSQNPLLTYL-NCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC--SF 179
Query: 742 NSFDSRVPETETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMC 801
N LD + ++ L + TK + + +L L +
Sbjct: 180 NKITE---------LD-VSQNKLLNRLNCDTNNITKLDL----NQNIQLTFLDCSSNKL- 224
Query: 802 TSLPSVGQLRSLKHLEVRGMSGVKRLSLEFYGNDSPIP---FPCLETLHFEDMKEWEEWI 858
T + V L L + + + + L TLH
Sbjct: 225 TEID-VTPLTQLTYFDCS------------VNPLTELDVSTLSKLTTLHCIQTD------ 265
Query: 859 PRGSSQEIEGFPKLRELHISRCSKLRGTLPERLPALEMFVIQSC--EELVVSVMSLPALC 916
++ +L C K++ L + Q+ EL +S P L
Sbjct: 266 --LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS--QNPKLV 321
Query: 917 KFKIDGCKKVVWRSTTKHLGL-ILHIGGCPNLQSLVAEEEQEQQQLCDLSC-----KLEY 970
++ + L L + L+SL + D S L
Sbjct: 322 YLYLNNTE------------LTELDVSHNTKLKSLSCVNA----HIQDFSSVGKIPALNN 365
Query: 971 LGLSYCQGLVTLPQSLLNLSSL 992
+ Q +T+P+ L +SL
Sbjct: 366 NFEAEGQ-TITMPKETLTNNSL 386
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 87/553 (15%), Positives = 163/553 (29%), Gaps = 104/553 (18%)
Query: 547 RNLRHLS----YIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQLLKLQ 602
NL L I ++ F + + L L+ N ++A + L L+
Sbjct: 57 INLTFLDLTRCQIYWIHEDT--FQSQHRLDTLV------LTANPLIFMAETALSGPKALK 108
Query: 603 QLRVFTVLNLSRTNIRNLPE-SITKLYNLHTLLL-------------EDCDRLKTL---- 644
L +T I ++ + L +L L ++LK L
Sbjct: 109 ------HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162
Query: 645 -------CADIGNLIKLHHLK-NSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRE 696
D+ +L + +L N N + + Q+L NF + +
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL-NFGGTQNLLVIFKG 221
Query: 697 LKF--LMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETR 754
LK + L ++++ G + V + ++ F + T
Sbjct: 222 LKNSTIQSLW-LGTFEDMDDEDISPAV----FEGLCEMSVESINLQKHYFFNISSNT--- 273
Query: 755 VLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLP--SVGQLRS 812
L+E + ++ P L LS L L +L S S
Sbjct: 274 ----FHCFSGLQELDLTATHLSELPSGL--VGLSTLKKLVLSANKF-ENLCQISASNFPS 326
Query: 813 LKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFED--MKEWEEWIPRGSSQEIEGFP 870
L HL ++G + L N L L ++ + + ++
Sbjct: 327 LTHLSIKGNTKRLELGTGCLEN-----LENLRELDLSHDDIETSDC-----CNLQLRNLS 376
Query: 871 KLRELHISRC--SKLRGTLPERLPALEMFVIQSCE----ELVVSVMSLPALCKFKIDGCK 924
L+ L++S L+ + P LE+ + + +L L +
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 925 -KVVWRSTTKHLGLILHIGGCPNLQSL-------VAEEEQEQQQLCDLSCKLEYLGLSYC 976
+ G P LQ L Q+ L L +LE L LS+C
Sbjct: 437 LDISSEQL---------FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFC 486
Query: 977 QGLVTLPQSLL-NLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMC 1035
L ++ Q +L + + + L S AL + + + + +
Sbjct: 487 D-LSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGIYLNLASNHISIILPSLL- 543
Query: 1036 ETNSSLEILNIAG 1048
S +N+
Sbjct: 544 PILSQQRTINLRQ 556
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 44/312 (14%), Positives = 99/312 (31%), Gaps = 58/312 (18%)
Query: 967 KLEYLGLSYCQGLVTLPQSLL-NLSSLREIYIRSCSSLVSFPEVALPSKLRLITIW-DCE 1024
+L+ L L+ L+ + ++ L +L+ ++ + S + L ++ L +++
Sbjct: 82 RLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN 139
Query: 1025 ALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLP--PSLKLL--------------L 1068
+ S+ L++L+ + + Y++ + L
Sbjct: 140 HISSIKLP-KGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197
Query: 1069 IFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNGLPATLESLEVG 1127
FD ++L ++ + + L SL F ++ G
Sbjct: 198 AFDSAVFQSLNF-------GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 1128 NLPQSLKFLDV-------------WECPKLE----------SIAERLNNNTSLEVIDIGN 1164
S++ +++ L+ + L ++L+ + +
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310
Query: 1165 CENLKILPSG-LHNLCQLQRISIWCCGNLVSFSEGGL-PCAKLTRLEISEC--ERLEALP 1220
+ L N L +SI + G L L L++S E +
Sbjct: 311 N-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
Query: 1221 RGLRNLTCLQHL 1232
LRNL+ LQ L
Sbjct: 370 LQLRNLSHLQSL 381
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 55/340 (16%), Positives = 108/340 (31%), Gaps = 57/340 (16%)
Query: 967 KLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVAL--PSKLR-------L 1017
L +L L+ CQ + + L + + + L+ E AL P L+
Sbjct: 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTG 116
Query: 1018 ITIWDCEALKSLP---------------EAWMCETNSSLEILNIAGCSSLTYITGVQLP- 1061
I+ D L + + L++L+ ++ Y++ +
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSS 175
Query: 1062 -PSLKLL--------------LIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCP 1106
L FD ++L ++ + + L
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF-------GGTQNLLVIFKGLKNSTIQ 228
Query: 1107 SLTCL-FSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNC 1165
SL F ++ G S++ +++ + + + + L+ +D+
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288
Query: 1166 ENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGL--PCAKLTRLEISECERLEALPRG- 1222
+L LPSGL L L+++ + N LT L I + L G
Sbjct: 289 -HLSELPSGLVGLSTLKKLVLS--ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345
Query: 1223 LRNLTCLQHLTIGD-VLSPERDPEDEDRLPTNLHSLNIDN 1261
L NL L+ L + + + R ++L SLN+
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 76/518 (14%), Positives = 145/518 (27%), Gaps = 98/518 (18%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNL-PESITKLYNLHTLLLEDCDR 640
S N + + +L+ L L+L+R I + ++ + L TL+L
Sbjct: 40 FSFNVLPTIQNTTFSRLINLT------FLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-P 92
Query: 641 LKTLCADI-GNLIKLHHLK-NSNTISLQEMPLRFGKLTCLQTL---CNFVVGNDRGSRLR 695
L + L HL IS + + L++L N +
Sbjct: 93 LIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIKLPK--- 148
Query: 696 ELKFLMHLRGTLDISN--LENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETET 753
L+ LD N + + + +S + L L N P
Sbjct: 149 -GFPTEKLK-VLDFQNNAIHYL------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200
Query: 754 RVLDMLKPHQNLEEFCINGYRGTKFPIW-LGDSSLSKLVTLKFQYCGMCTSLPSVGQLRS 812
+ G + L +S++ L F+
Sbjct: 201 --------SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM----------DDED 242
Query: 813 LKHLEVRGMSGVKRLSLEFYGND----SPIPFPCLETLHFEDMKEWE-EWIPRGSSQEIE 867
+ G+ + S+ + S F C L D+ +P G +
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG----LV 298
Query: 868 GFPKLRELHISRCSKLRGTLPERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVV 927
G L++L +S + L + L + GC
Sbjct: 299 GLSTLKKLVLSAN---------KFENLCQISASNFPSLTHLSIKGNTKRLELGTGC---- 345
Query: 928 WRSTTKHLGLILHIGGCPNLQSL------VAEEEQEQQQLCDLSCKLEYLGLSYCQGLVT 981
+ NL+ L + + QL +LS L+ L LSY + L
Sbjct: 346 -------------LENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSL 391
Query: 982 LPQSLLNLSSLREIYIRSC--SSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNS 1039
++ L + + + L+++ + L E + +
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-QLFDGLP 449
Query: 1040 SLEILNIAGCSSLTYITGVQLP-----PSLKLLLIFDC 1072
+L+ LN+ G + L++L++ C
Sbjct: 450 ALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC 486
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 64/455 (14%), Positives = 152/455 (33%), Gaps = 83/455 (18%)
Query: 764 NLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHL-----EV 818
+ + T + L ++ TL+ G+ S+ V L +L + ++
Sbjct: 25 EKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNNQL 80
Query: 819 RGMSGVKRLS----LEFYGND--SPIPF---PCLETLHFEDMKEWEEWIPRGSSQEIEGF 869
++ +K L+ + N P L L + + I ++
Sbjct: 81 TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ-----I--TDIDPLKNL 133
Query: 870 PKLRELHISRCSKLRGTLP-ERLPALEMFVIQSCEELVVSVMSLPALCKFKIDGCKKVVW 928
L L +S + L +L+ + + + +L L + I K
Sbjct: 134 TNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK---- 188
Query: 929 RSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQLCDLSC-----KLEYLGLSYCQGLVTLP 983
+ I + NL+SL+A Q+ D++ L+ L L+ Q +
Sbjct: 189 ------VSDISVLAKLTNLESLIATN----NQISDITPLGILTNLDELSLNGNQ--LKDI 236
Query: 984 QSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEI 1043
+L +L++L ++ + + + + ++ +KL + + + + ++ ++L
Sbjct: 237 GTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQ-ISNISP---LAGLTALTN 291
Query: 1044 LNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHL--- 1100
L + L I+ + +L L ++ + ++ + S + L+ L
Sbjct: 292 LELNEN-QLEDISPISNLKNLTYLTLYFNN----ISDISPVSSLTK-------LQRLFFY 339
Query: 1101 --------VIGRCPSLTCL-FSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERL 1151
+ ++ L N + + L L NL + + L + + +
Sbjct: 340 NNKVSDVSSLANLTNINWLSAGHNQI-SDLTPL--ANLTR-ITQLGLNDQ-AWTNAPVNY 394
Query: 1152 NNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISI 1186
N S+ + N I P+ + + I
Sbjct: 395 KANVSIPNT-VKNVTGALIAPATISDGGSYTEPDI 428
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 80/485 (16%), Positives = 166/485 (34%), Gaps = 82/485 (16%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRL 641
L+ + L + + + L T L R I+++ + + L NL + + +L
Sbjct: 23 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN-QL 80
Query: 642 KTLCADIGNLIKLHHLK-NSNTIS-LQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKF 699
+ + NL KL + N+N I+ + LT L L + N ++ ++
Sbjct: 81 TDI-TPLKNLTKLVDILMNNNQIADITP----LANLTNLTGL--TLFNN----QITDIDP 129
Query: 700 LMHLRG--TLDISN--LENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRV 755
L +L L++S+ + ++ LSG +L+ L N T+ +
Sbjct: 130 LKNLTNLNRLELSSNTISDIS--------ALSGLTSLQQLSF---GNQV------TDLKP 172
Query: 756 LDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKH 815
L L LE I+ + + + L+ L +L + + + +G L +L
Sbjct: 173 LANLT---TLERLDISSNKVSDIS---VLAKLTNLESLIATNNQI-SDITPLGILTNLDE 225
Query: 816 LEVRGMSGVKRLS-LEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRE 874
L + G +L + + L L + + P + G KL E
Sbjct: 226 LSLNG----NQLKDIGTLAS-----LTNLTDLDLANNQ-ISNLAP------LSGLTKLTE 269
Query: 875 LHISRCSKLRGTLP-ERLPALEMFVIQSCE-ELVVSVMSLPALCKFKIDGCKKVVWRSTT 932
L + ++ P L AL + + E + + +L L +
Sbjct: 270 LKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-------- 320
Query: 933 KHLGLILHIGGCPNLQSLVAEEEQ--EQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLS 990
+ I + LQ L + + L +L+ + +L + Q ++ L NL+
Sbjct: 321 --ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLT-NINWLSAGHNQ--ISDLTPLANLT 375
Query: 991 SLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCS 1050
+ ++ + + + P + T+ + P S +I +
Sbjct: 376 RITQLGLNDQ-AWTNAPVNYKANVSIPNTVKNVTGALIAPATI--SDGGSYTEPDITW-N 431
Query: 1051 SLTYI 1055
+Y
Sbjct: 432 LPSYT 436
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 66/471 (14%), Positives = 139/471 (29%), Gaps = 57/471 (12%)
Query: 576 TFLSIMLSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLL 635
L +S+N YL S+ +L+ L +LS + + NL L L
Sbjct: 48 RILI--ISHNRIQYLDISVFKFNQELEYL------DLSHNKLVKIS--CHPTVNLKHLDL 97
Query: 636 EDCDRLKTL--CADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSR 693
+ L C + GN+ +L L S T L++ + L +V +
Sbjct: 98 -SFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSS--VLPIAHLNISKVLLVLGETYGE 153
Query: 694 LRELKFLMHLR-GTLDISNLENVKHVGDAKEAHLSGKKN-LKVLLLRWARNSFDSRVPET 751
+ + L +L I N + + + L + N +
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213
Query: 752 ETRVLDMLKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLR 811
+ + L + + +++ + G
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273
Query: 812 SLKHLEVRGMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWE-EWIPRGSSQEIEGFP 870
SLK L + ++ + +G + ++ ++ +
Sbjct: 274 SLKALSIH------QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS---KIS 324
Query: 871 KLRELHISRC--SKLRGTLPERLPALEMFV-----IQSCEELVVSVMSLPALCKFKIDGC 923
L S + L LE + ++ ++ + +L + I
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
Query: 924 KKVVWRSTTKHLGLILHIGGC---PNLQSLVAEEEQEQQQLCD-LSCKLEYLGLSYCQGL 979
+ G C +L SL + L +++ L L + +
Sbjct: 385 S----------VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-I 433
Query: 980 VTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPS--KLRLITI----WDCE 1024
++P+ ++ L +L+E+ + S L S P+ L+ I + WDC
Sbjct: 434 KSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-07
Identities = 96/589 (16%), Positives = 183/589 (31%), Gaps = 114/589 (19%)
Query: 543 QRISRNLRHLS----YIRGEYDGVKRFAGFYDIKYLRTFLSIMLSNNSRGYLACSILHQL 598
I + +++ ++ F+ F ++++L LS + H L
Sbjct: 28 DDIPSSTKNIDLSFNPLKILKSYS--FSNFSELQWLD------LSRCEIETIEDKAWHGL 79
Query: 599 LKLQQLRVFTVLNLSRTNIRNL-PESITKLYNLHTLLLEDCDRLKTLCAD-IGNLIKLHH 656
L L L+ I++ P S + L +L L+ + +L +L + IG LI L
Sbjct: 80 HHLS------NLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKK 132
Query: 657 LK-NSNTISLQEMPLRFGKLTCLQTL---CNFVVGNDRGSRLRELKFLMHLRGTLDISN- 711
L N I ++P F LT L + N++ L+ L+ + +LD+S
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRENPQVNLSLDMSLN 191
Query: 712 -LENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQNLEEFCI 770
++ + + L L LR N S + +T + L L H+ +
Sbjct: 192 PIDFI-------QDQAFQGIKLHELTLR--GNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242
Query: 771 NGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRGMSGVKRLSLE 830
+ F S + L + + + S ++ ++ V +SL
Sbjct: 243 DERNLEIFE----PSIMEGLCDVTIDEFRL-----TYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 831 FYGN-----DSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFPKLRELHISRCSKLRG 885
G + ++L + P L+ L ++
Sbjct: 294 --GVSIKYLEDVPKHFKWQSLSIIRCQ--------LKQFPTLDLPFLKSLTLTMNKGSIS 343
Query: 886 TLPERLPALEMF-----VIQSCEELVVSVMSLPALCKFKIDGCKKVVWRSTTKHLGLILH 940
LP+L + S + +L + + + +
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG---------AIIMSAN 394
Query: 941 IGGCPNLQSLVA-----EEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREI 995
G LQ L + E L KL YL +SY + L L+SL +
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTL 453
Query: 996 YIRSCSSLVSFPEVAL--PSKLRLITIWDCEALKSLPEAWMCETNSSLEILNI------- 1046
+ S + + L + + C+ L+ + + +T L++LN+
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG-VFDTLHRLQLLNMSHNNLLF 511
Query: 1047 ------AGCSSLTY-------ITGVQ-----LPPSLKLLLI----FDCD 1073
SL+ I + P SL + C
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 63/304 (20%), Positives = 106/304 (34%), Gaps = 43/304 (14%)
Query: 937 LILHIGGCPNLQSLVAEEEQEQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIY 996
L +G + ++L E + LCD++ ++ L+Y L+++ +
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVT--IDEFRLTYTNDFSDDIVKFHCLANVSAMS 291
Query: 997 IRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYIT 1056
+ S + +V K + ++I C+ LK P + L+ L +
Sbjct: 292 LAGVS-IKYLEDVPKHFKWQSLSIIRCQ-LKQFPTLDL----PFLKSLTLTMNKGSISFK 345
Query: 1057 GVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNG 1116
V LP SL L + ++ S S ++ L HL S NG
Sbjct: 346 KVALP-SLSYLDLSRN-ALSF------SGCCSYSDLGTNSLRHL----------DLSFNG 387
Query: 1117 LPATLESLEVGNLPQSLKFLDVWECPKLESIAER--LNNNTSLEVIDIGNCENLKILPSG 1174
+ S L L+ LD L+ + E + L +DI
Sbjct: 388 A--IIMSANFMGLE-ELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443
Query: 1175 LHNLCQLQRISIWCCGNLVSFSEGGLPCA-----KLTRLEISECERLEALPRG-LRNLTC 1228
L L + + GN SF + L LT L++S+C +LE + G L
Sbjct: 444 FLGLTSLNTLKM--AGN--SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHR 498
Query: 1229 LQHL 1232
LQ L
Sbjct: 499 LQLL 502
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 8e-07
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 589 YLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADI 648
+LA L L L+QL + T L+LS +R LP ++ L L L D L+ + +
Sbjct: 447 HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENV-DGV 504
Query: 649 GNLIKLHHLK-NSNTISLQEMPLRFGKLTCLQTL 681
NL +L L +N + L L
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 8e-07
Identities = 57/292 (19%), Positives = 94/292 (32%), Gaps = 48/292 (16%)
Query: 960 QLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLIT 1019
+ C + L + L TLP L + + I + L S P LP +LR +
Sbjct: 35 RACLNN-GNAVLNVGESG-LTTLPDCLPA--HITTLVIPDNN-LTSLPA--LPPELRTLE 87
Query: 1020 IWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIRTLT 1079
+ + L SLP L I + LT++ LP L L + +
Sbjct: 88 VSGNQ-LTSLPVL--PPGLLELSIFSN----PLTHLP--ALPSGLCKL---WIFGNQLTS 135
Query: 1080 VEEGIQSSSSSRYTSSLLEHL--VIGRCPSLTCLFSK-NGLPATLESLEV----GN---- 1128
+ + + L L + L ++ LP L+ N
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195
Query: 1129 ---LPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRIS 1185
LP L L + +L S+ + L+ + + L LP L +L
Sbjct: 196 LPTLPSELYKLWAYNN-RLTSLPALP---SGLKELIVSGNR-LTSLPVLPSELKEL---- 246
Query: 1186 IWCCGN-LVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLTIGD 1236
GN L S + L L + +L LP L +L+ + +
Sbjct: 247 -MVSGNRLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEG 293
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 5e-05
Identities = 47/225 (20%), Positives = 70/225 (31%), Gaps = 48/225 (21%)
Query: 1154 NTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISEC 1213
N V+++G L LP L + + I NL S +L LE+S
Sbjct: 39 NNGNAVLNVGES-GLTTLPDCL--PAHITTLVIPDN-NLTSLPALP---PELRTLEVSGN 91
Query: 1214 ERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQ 1273
+L +LP L L + P LP+ L L I + S
Sbjct: 92 -QLTSLPVLPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQL-TSLPV--- 138
Query: 1274 GGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERL 1333
LQ+L + D + S P P+ L L + L L
Sbjct: 139 ------LPPGLQELSV--SDNQLASLPAL-------------PSELCKLWAYNN-QLTSL 176
Query: 1334 SSSIFYHQNLTKLKLCNCPKLKYFPEKGLPASLLRLEISGCPLIE 1378
L +L + + +L P LP+ L +L L
Sbjct: 177 PMLP---SGLQELSVSDN-QLASLPT--LPSELYKLWAYNNRLTS 215
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 608 TVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQE 667
VLN+ + + LP+ + ++ TL++ D L +L A L L N L
Sbjct: 43 AVLNVGESGLTTLPDCLPA--HITTLVIPDN-NLTSLPALPPELRTLEVSGN----QLTS 95
Query: 668 MPLRFGKLTCLQTLCN 683
+P+ L L N
Sbjct: 96 LPVLPPGLLELSIFSN 111
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 86/489 (17%), Positives = 159/489 (32%), Gaps = 81/489 (16%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESI-TKLYNLHTLLLEDCDR 640
LS NS L + L +L VL LS IR+L + +L L + +R
Sbjct: 59 LSQNSISELRMPDISFLSEL------RVLRLSHNRIRSLDFHVFLFNQDLEYLDV-SHNR 111
Query: 641 LKTLCADIGNLIKLHHLKNSNTISLQEMPL--RFGKLTCLQTLCNFVVGNDRGSRLRELK 698
L+ + + L HL S +P+ FG LT L L ++ R+L
Sbjct: 112 LQNI--SCCPMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLS------AAKFRQLD 162
Query: 699 FLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDM 758
L L L+ V + E N VL L + NS S L
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222
Query: 759 LKPHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGM----CTSLPSVGQLRSLK 814
L+ N++ N R F L + L+ + Q+ L R ++
Sbjct: 223 LQ-LSNIKLNDENCQRLMTFLSEL--TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279
Query: 815 HLEVRGMSGVKRLSLEFYGN-DSPIPFPCLETLHFEDMKEWEEWIPRG---------SSQ 864
+L + ++ +R+ E + ++ + +E + + +E + S
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339
Query: 865 EIEGFP--------KLRELHISRC--SKLRGTLPERLPALEMFVIQS--CEELVVSVMSL 912
+ L+ ++ + L L+ ++Q + +
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 913 PALCKFKIDGCKK-----------VVWRSTTKHLGLILHIGGCPNLQSLVAEEEQEQQQL 961
+ + W + L L L V
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL-----SSNMLTGSVFR-------- 446
Query: 962 CDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPS--KLRLIT 1019
L K++ L L + ++++P+ + +L +L+E+ + S + L S P+ L+ I
Sbjct: 447 -CLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIW 503
Query: 1020 I----WDCE 1024
+ WDC
Sbjct: 504 LHDNPWDCT 512
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 58/314 (18%), Positives = 102/314 (32%), Gaps = 56/314 (17%)
Query: 959 QQLCDLSCKLEYLGLSYCQ----GLVTLPQSLLNLSSLREIYIRSC----SSLVSFPEVA 1010
Q L SCK++ L L C G L +L L +L+E+++ + L E
Sbjct: 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137
Query: 1011 LPS-----KLRL----ITIWDCEALKSLPEAWMCETNSSLEILNIAGC----SSLTYITG 1057
L KL+L ++ CE L A + + L ++ + + +
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPL-----ASVLRAKPDFKELTVSNNDINEAGVRVLCQ 192
Query: 1058 VQLPPSLKLL-LIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNG 1116
+L L + + + + + + L L +G G
Sbjct: 193 GLKDSPCQLEALKLESCGVT----SDNCRDLCGIVASKASLRELALGSNK-----LGDVG 243
Query: 1117 LPATLESLEVGNLPQSLKFLDVWECPK----LESIAERLNNNTSLEVIDIGNC----ENL 1168
+ L + L+ L +WEC + L SL+ + + E
Sbjct: 244 MAELCPGLLHPS--SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301
Query: 1169 KILPSGL-HNLCQLQRISIWCCG----NLVSFSEGGLPCAKLTRLEISEC----ERLEAL 1219
++L L CQL+ + + C FS L L+IS + L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361
Query: 1220 PRGLRNLTC-LQHL 1232
+GL L+ L
Sbjct: 362 CQGLGQPGSVLRVL 375
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 54/299 (18%), Positives = 84/299 (28%), Gaps = 79/299 (26%)
Query: 961 LCDLSCKLEYLGLSYCQ----GLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLR 1016
L D C+LE L L C L + + +SLRE+ + S
Sbjct: 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK--------------- 238
Query: 1017 LITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLPPSLKLLLIFDCDSIR 1076
+ D + L + +S L L I C IT
Sbjct: 239 ---LGD-VGMAELCPG-LLHPSSRLRTLWIWECG----IT-------------------- 269
Query: 1077 TLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCLFSKNGLPATLESLEVGNLPQSLKFL 1136
+G L+ L + G E+L L+ L
Sbjct: 270 ----AKGCGDLCRVLRAKESLKELSLAGNE-----LGDEGARLLCETLLEPGC--QLESL 318
Query: 1137 DVWECPKL-----ESIAERLNNNTSLEVIDIGNC----ENLKILPSGL-HNLCQLQRISI 1186
V C + L N L + I N ++ L GL L+ + +
Sbjct: 319 WVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377
Query: 1187 WCCG----NLVSFSEGGLPCAKLTRLEISEC----ERLEALPRGLRNLTC-LQHLTIGD 1236
C + S + L L L++S + L +R C L+ L + D
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 6/124 (4%)
Query: 593 SILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLI 652
+ + +L+ L+LS + + + + L + +L + +
Sbjct: 182 YDVKGQVVFAKLKT---LDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQ 237
Query: 653 KLHHLK-NSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLR-GTLDIS 710
L H N + F K +QT+ V G E G
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297
Query: 711 NLEN 714
+L
Sbjct: 298 DLPA 301
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 50/322 (15%), Positives = 107/322 (33%), Gaps = 61/322 (18%)
Query: 938 ILHIGGCPNLQSLVAEEEQ--EQQQLCDLSCKLEYLGLSYCQGLVTLPQSLLNLSSLREI 995
++ ++ LV E+ Q + L+ LEYL L+ Q +T L NL L +
Sbjct: 37 VVTQEELESITKLVVAGEKVASIQGIEYLT-NLEYLNLNGNQ--ITDISPLSNLVKLTNL 93
Query: 996 YIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYI 1055
YI + + + + LR + + + + + + + LN+ +L+ +
Sbjct: 94 YIGTNK-ITDISALQNLTNLRELYLNEDN-ISDISPLANL---TKMYSLNLGANHNLSDL 148
Query: 1056 TGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSK 1114
+ + L L + + ++ +T I L L +
Sbjct: 149 SPLSNMTGLNYLTVTES-KVKDVTP---------------------IANLTDLYSLSLNY 186
Query: 1115 NGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVID-----------IG 1163
N + + L +L L + + ++ I + N T L + +
Sbjct: 187 NQI-EDISPL--ASLTS-LHYFTAYVN-QITDI-TPVANMTRLNSLKIGNNKITDLSPLA 240
Query: 1164 NCENLKIL---------PSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECE 1214
N L L + + +L +L+ + N +S ++L L ++ +
Sbjct: 241 NLSQLTWLEIGTNQISDINAVKDLTKLK--MLNVGSNQISDISVLNNLSQLNSLFLNNNQ 298
Query: 1215 RLEALPRGLRNLTCLQHLTIGD 1236
+ LT L L +
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQ 320
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 8e-04
Identities = 40/277 (14%), Positives = 93/277 (33%), Gaps = 47/277 (16%)
Query: 941 IGGCPNLQSLVAEEEQEQQQLCDLSC-----KLEYLGLSYCQGLVTLPQSLLNLSSLREI 995
+ NL+ L E + D+S K+ L L ++ L N++ L +
Sbjct: 106 LQNLTNLRELYLNE----DNISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYL 160
Query: 996 YIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNIAGCSSLTYI 1055
+ + +A + L +++ + ++ + + +SL I
Sbjct: 161 TVTESK-VKDVTPIANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQ----I 211
Query: 1056 TGVQLPPSLKLLLIFDCDSIRTLTVEEGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSK 1114
T + ++ L + + I S + LT L
Sbjct: 212 TDITPVANMTRLNSLKIGNNK-------ITDLSP------------LANLSQLTWLEIGT 252
Query: 1115 NGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSG 1174
N + + + ++ +L + LK L+V ++ I+ LNN + L + + N +
Sbjct: 253 NQI-SDINAV--KDLTK-LKMLNVGSN-QISDISV-LNNLSQLNSLFLNNNQLGNEDMEV 306
Query: 1175 LHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEIS 1211
+ L L + + N ++ +K+ + +
Sbjct: 307 IGGLTNLTTLFLS--QNHITDIRPLASLSKMDSADFA 341
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 38/279 (13%), Positives = 71/279 (25%), Gaps = 96/279 (34%)
Query: 974 SYCQGL--VTLPQSLLNLSSLREIYIR--SCSSLVSFPEVALPSKLRLITIW---DCEAL 1026
+G + LP +S++ I S + V L L+ I + +
Sbjct: 110 EILKGYNEIILP------NSVKSIPKDAFRNSQIAK---VVLNEGLKSIGDMAFFNS-TV 159
Query: 1027 KS--LPEAWMCETNSSLEILNI---AGCSSLTYITGVQLPPSLKLLL---IFDCDSIRTL 1078
+ P S+LE L C +L L + L F I +
Sbjct: 160 QEIVFP--------STLEQLKEDIFYYCYNLKKAD---LSKTKITKLPASTFVYAGIEEV 208
Query: 1079 TVEEGIQSSSSSRYTSSLLEHLVIGR-----CPSLTCLFSKNGLPATLESLEVG------ 1127
+ ++ IG L + +P + ++
Sbjct: 209 LLPVTLKE---------------IGSQAFLKTSQLKTI----EIPENVSTIGQEAFRESG 249
Query: 1128 ----NLPQSLKFLDVW---ECPKLESIAERLNNNTSLEVIDIG-----NCENLK--ILPS 1173
LP + + CP+L + + I C L +P
Sbjct: 250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309
Query: 1174 GLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISE 1212
++ + K+T+L I
Sbjct: 310 S------IRILGQGL------LGG----NRKVTQLTIPA 332
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 593 SILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLI 652
+ + +L+ L+LS + + + + L + +L + +
Sbjct: 182 YDVKGQVVFAKLKT---LDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQ 237
Query: 653 KLHHLK-NSNTISLQEMPLRFGKLTCLQTL 681
L H N + F K +QT+
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 29/161 (18%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRL 641
L+NN + +LL + L+ + NI + S + L + ++
Sbjct: 87 LNNNY--------VQELLVGPSIET---LHAANNNISRVSCSR--GQGKKNIYLANN-KI 132
Query: 642 KTL-CADIGNLIKLHHLK-NSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKF 699
L D G ++ +L N I L+ L + + ++
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN---LQYNFIYDVKGQVV 189
Query: 700 LMHLRGTLDISN--LENVKHVGDAKEAHLSGKKNLKVLLLR 738
L+ TLD+S+ L + + + LR
Sbjct: 190 FAKLK-TLDLSSNKLAFM-------GPEFQSAAGVTWISLR 222
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 10/137 (7%)
Query: 1102 IGRCPSLTCL-FSKNGLPATLESLEVGNLPQSLKFLDVWECPKLESIAERLNNNTSLEVI 1160
I ++ L + + L L+ L + L+ TSL ++
Sbjct: 62 IEYAHNIKDLTINNIHA-TNYNPIS--GLSN-LERLRIMGKDVTSDKIPNLSGLTSLTLL 117
Query: 1161 DIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSE-GGLPCAKLTRLEISECERLEAL 1219
DI + + + + ++ L ++ I + G + LP +L L I +
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP--ELKSLNIQFD-GVHDY 174
Query: 1220 PRGLRNLTCLQHLTIGD 1236
RG+ + L L
Sbjct: 175 -RGIEDFPKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 601 LQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLK-N 659
++ L ++ + N I+ L NL L + D ++ L L L +
Sbjct: 62 IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120
Query: 660 SNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLMHLRGTLDISN--LENVKH 717
+ + + L + ++ + N + + LK L L+ +L+I + + +
Sbjct: 121 HSAHDDSILT-KINTLPKVNSI--DLSYNGAITDIMPLKTLPELK-SLNIQFDGVHDYR- 175
Query: 718 VGDAKEAHLSGKKNLKVLLL 737
+ L L
Sbjct: 176 -------GIEDFPKLNQLYA 188
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 55/280 (19%), Positives = 107/280 (38%), Gaps = 41/280 (14%)
Query: 967 KLEYLGLSYCQGLVTL-PQSLLNLSSLREIYIRSCSSLVSFPEVAL--PSKLRLITIWDC 1023
LE L L+ + + P + NL +LR + +RS L P S L + I +
Sbjct: 57 HLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN 114
Query: 1024 EALKSLPEAWMCETNSSLEILNIAGCSSLTYITGVQLP--PSLKLLLIFDCDSIRTLTVE 1081
+ + L + + +L+ L + L YI+ SL+ L + C ++ ++
Sbjct: 115 K-IVILLDYMF-QDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC-NLTSIP-- 168
Query: 1082 EGIQSSSSSRYTSSLLEHLVIGRCPSLTCL-FSKNGLPATLESLEVGNLPQSLKFLDVWE 1140
+ L HL L L + + L + LK L++
Sbjct: 169 ------------TEALSHL-----HGLIVLRLRHLNI-NAIRDYSFKRLYR-LKVLEISH 209
Query: 1141 CPKLESIAERLNNNTSLEVIDIGNCENLKILPSG-LHNLCQLQRISIWCCGNLVSFSEGG 1199
P L+++ +L + I +C NL +P + +L L+ +++ N +S EG
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNL--SYNPISTIEGS 266
Query: 1200 L--PCAKLTRLEISECERLEALPRG-LRNLTCLQHLTIGD 1236
+ +L +++ +L + R L L+ L +
Sbjct: 267 MLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSG 305
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 35/258 (13%)
Query: 1128 NLPQSLKFLDVWECPKLESIAER-LNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISI 1186
+P + LD+ + +++++ + + LE +++ + P +NL L+ + +
Sbjct: 29 GIPTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87
Query: 1187 WCCGN-LVSFSEG---GLPCAKLTRLEISECERLEALPRGL-RNLTCLQHLTIGDVLSPE 1241
N L G GL LT+L+ISE ++ L + ++L L+ L +GD
Sbjct: 88 R--SNRLKLIPLGVFTGLS--NLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY 142
Query: 1242 RDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPP 1301
L +L L ++ + I L+ L LR+R + + +
Sbjct: 143 ISHRAFSGLN-SLEQLTLEKCNL--TSIP----TEALSHLHGLIVLRLRHLN--INAIRD 193
Query: 1302 EEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPE-- 1359
+ L L L I+ P L+ ++ + Y NLT L + +C L P
Sbjct: 194 --------YSFKRLYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLA 243
Query: 1360 -KGLPASLLRLEISGCPL 1376
+ L L L +S P+
Sbjct: 244 VRHLV-YLRFLNLSYNPI 260
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1416 | ||||
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 1e-52 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 5e-04 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 7e-04 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.002 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 184 bits (468), Expect = 1e-52
Identities = 47/286 (16%), Positives = 88/286 (30%), Gaps = 31/286 (10%)
Query: 179 QRLPTTSLVNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVY 238
++L ++ + Y RE +++ L D + + G G GK+ +A
Sbjct: 9 RKLLLGNVPKQMTCYIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQAL 65
Query: 239 NDHR--VQDHFDLKAWTCVSNDFDVIRLTKTILRCITK----------QTIDDSDLNLLQ 286
+ + ++D W S + + + L +
Sbjct: 66 SKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKR 125
Query: 287 EELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQEV-VAIMGTA 345
N + R L V DDV E W + +VTTR+ E+ A T
Sbjct: 126 MICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQTC 177
Query: 346 PAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRG 405
++ L D+C + + + E++ K + +G P
Sbjct: 178 EFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEP 234
Query: 406 KHGPSDWEDVLNSNIWDLPEDRCGILPALRVSYYYLSPPLKQCFAY 451
K +E + N G+ SY L+ L++C
Sbjct: 235 KT----FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEV 276
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 2e-04
Identities = 35/243 (14%), Positives = 75/243 (30%), Gaps = 17/243 (6%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCD-R 640
L+ + L + +LL + R+ + + + + L +
Sbjct: 7 LTGKN---LHPDVTGRLLSQGVI----AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59
Query: 641 LKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFL 700
+ TL + KL +L + K + L L L+ L
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119
Query: 701 MHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLK 760
L++S + + ++ L + +N S + +++
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-------TLVR 172
Query: 761 PHQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCT--SLPSVGQLRSLKHLEV 818
NL ++ K + L+ L L C +L +G++ +LK L+V
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232
Query: 819 RGM 821
G+
Sbjct: 233 FGI 235
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 30/232 (12%), Positives = 66/232 (28%), Gaps = 9/232 (3%)
Query: 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPII-GMGGLGKTTLAQLVYNDHRVQDHFDL 249
++ RE + +++ LL + LRN G + G G GKT + ++ ++ +
Sbjct: 17 RLPHREQQLQQLDILL-GNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARF 75
Query: 250 KAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSR--KKFLLVLDDVWN 307
+ + + L + L LVLDD +N
Sbjct: 76 VYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFN 135
Query: 308 ENYNDWVDMSRPLE--AGAPGSKIIVTTRNQEVVAIMGTAPAYQLKRLSTDDCLSVFTQH 365
+ R + +I + + P+ + + F+ +
Sbjct: 136 LAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG---KYVIRFSPY 192
Query: 366 SLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWEDVLN 417
+ D + + + L + A G D ++
Sbjct: 193 TKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID 244
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 40.9 bits (94), Expect = 7e-04
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPII---GMGGLGKTTLAQLVYNDHRVQDHF 247
++ R E + + + L L G V I G G+GKTTLA+
Sbjct: 17 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAK 76
Query: 248 DLKAWTCVSNDFDVIRLTKTILR 270
+ + TIL
Sbjct: 77 EGLTVKQAYVNAFNAPNLYTILS 99
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 0.002
Identities = 50/382 (13%), Positives = 108/382 (28%), Gaps = 37/382 (9%)
Query: 582 LSNNSRGYLACSILHQLLKLQQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRL 641
L+ + L + + + L T L R I+++ + + L NL + + +L
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN-QL 78
Query: 642 KTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCNFVVGNDRGSRLRELKFLM 701
+ + NL KL + +N PL TL N + + + +
Sbjct: 79 TDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137
Query: 702 HLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKP 761
SN + + +V L+ N + + + +
Sbjct: 138 E-----LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192
Query: 762 HQNLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVR-- 819
L + L+ L L + + ++ L +L L++
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANN 251
Query: 820 ---------GMSGVKRLSLEFYGNDSPIPFPCLETLHFEDMKEWEEWIPRGSSQEIEGFP 870
G++ + L L + P L L ++ E + I
Sbjct: 252 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI----SPISNLK 307
Query: 871 KLRELHISRCSKLRGTLP-ERLPALEMFVIQSCE-ELVVSVMSLPALCKFKIDGCKKVVW 928
L L + + P L L+ + + V S+ +L + +
Sbjct: 308 NLTYLTLYFN-NISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQ---- 362
Query: 929 RSTTKHLGLILHIGGCPNLQSL 950
+ + + + L
Sbjct: 363 ------ISDLTPLANLTRITQL 378
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1416 | |||
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 100.0 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.88 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.88 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.81 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.8 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.8 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.78 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.73 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.73 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.72 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.69 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.68 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.68 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.52 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.5 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.47 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.45 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 99.37 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.31 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.3 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.19 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.1 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.08 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.08 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.07 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.01 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.0 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 98.99 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.98 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 98.92 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.84 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 98.84 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.79 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 98.78 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.72 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 98.71 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 98.7 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 98.69 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 98.68 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 98.67 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.59 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 98.54 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.53 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.52 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 98.46 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 98.43 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.39 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 98.39 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.35 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 98.34 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 98.34 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 98.03 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.94 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 97.7 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.5 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.46 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 97.27 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.14 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.08 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.0 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 96.95 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.9 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.86 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.86 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.72 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.65 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.57 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.45 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.36 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.31 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.29 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.27 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.27 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.2 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.11 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.08 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 96.08 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.07 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.04 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.04 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.03 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.93 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.93 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.93 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.88 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.87 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.85 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 95.81 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.8 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 95.75 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.69 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 95.68 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 95.64 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 95.63 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.63 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.62 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.62 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 95.61 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.59 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.59 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 95.49 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 95.46 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.46 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 95.4 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 95.4 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 95.37 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.36 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.27 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.24 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 95.24 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.23 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.21 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 95.21 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 95.17 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.11 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 95.09 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 95.08 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.99 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.92 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.83 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.8 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.79 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 94.78 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 94.77 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 94.75 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.74 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 94.74 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.71 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.69 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.54 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.43 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.39 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.36 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.32 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 94.01 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.01 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.98 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.96 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.93 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.87 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 93.82 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.7 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.67 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 93.67 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.6 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 93.6 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.58 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.53 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.51 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.08 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.03 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.03 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.81 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.71 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.7 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.49 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 92.37 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 92.23 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.21 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.16 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 91.97 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 91.62 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.55 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.53 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.47 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 91.45 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.44 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.39 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.21 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.1 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.93 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 90.62 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 90.42 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.39 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.28 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.86 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.79 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.78 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 89.67 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.65 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.58 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.29 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.27 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.23 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.18 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.89 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.83 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.69 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 88.69 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.65 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.62 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.6 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.6 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.55 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.54 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.43 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.37 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.34 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 88.21 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.18 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.14 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.06 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.93 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.92 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 87.85 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 87.85 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 87.83 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.81 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.79 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 87.72 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.7 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.61 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.53 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.47 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 87.34 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.33 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.29 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.28 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 87.24 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.2 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 87.16 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.12 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.08 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.01 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 86.88 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.88 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.86 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.72 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 86.64 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.51 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.39 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 86.24 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.23 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 86.13 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.75 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 85.72 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.71 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.44 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 85.11 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 84.73 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 84.71 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 84.63 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.46 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 84.29 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 84.03 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 83.67 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 83.66 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 82.94 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.84 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 82.75 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 82.61 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 82.52 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 82.1 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 81.9 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 81.66 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.17 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 81.07 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 80.52 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=5.1e-43 Score=299.26 Aligned_cols=248 Identities=17% Similarity=0.161 Sum_probs=193.7
Q ss_pred CCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEECCCCCHHHH
Q ss_conf 66770320046799999998328888999938999986898809999999980422--3145682799995687588999
Q 000568 187 VNEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR--VQDHFDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 187 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~~~~~~ 264 (1416)
+.++.++||+.++++|+++|... .+...++|+|+||||+||||||+++|++.. .+.+|++++|+++++.++...+
T Consensus 17 p~~~~~~gR~~~~~~i~~~L~~~---~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l 93 (277)
T d2a5yb3 17 PKQMTCYIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 93 (277)
T ss_dssp BCCCCSCCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCCCCEECCHHHHHHHHHHHHHC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHH
T ss_conf 99886237399999999998734---687840899977997888999999998556554012764899993687777789
Q ss_pred HHHHHHHH---CCCCC-------CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECC
Q ss_conf 99999970---28778-------978788999999998526647899635335481338641144445999948999814
Q 000568 265 TKTILRCI---TKQTI-------DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTR 334 (1416)
Q Consensus 265 ~~~i~~~l---~~~~~-------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR 334 (1416)
...+...+ +.... ...........+.+.+.++|+|+|+||||+. ..|..+. ..|||||||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~--~~~~~~~------~~~srilvTTR 165 (277)
T d2a5yb3 94 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE--ETIRWAQ------ELRLRCLVTTR 165 (277)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH--HHHHHHH------HTTCEEEEEES
T ss_pred HHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHHHHHC------CCCCEEEEEEE
T ss_conf 999999998722022027863212336999999999984468816752506677--6655520------45755999964
Q ss_pred CHHHHHHHCCC-CEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 36788761898-80638999903189999982159999999734999999999843998588999998750498924188
Q 000568 335 NQEVVAIMGTA-PAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKHGPSDWE 413 (1416)
Q Consensus 335 ~~~v~~~~~~~-~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~ 413 (1416)
+..++..+... ..|++++|+.+|||+||.++++... ..+..++++++|+++|||+|||++++|+.++.+ +.+.|.
T Consensus 166 ~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~---~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~ 241 (277)
T d2a5yb3 166 DVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMA 241 (277)
T ss_dssp BGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHH
T ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CHHHHH
T ss_conf 4899986378871687788997999999999847766---742567999999999589989999999986559-899999
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 887201358998856722589997727996689898673
Q 000568 414 DVLNSNIWDLPEDRCGILPALRVSYYYLSPPLKQCFAYC 452 (1416)
Q Consensus 414 ~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~ 452 (1416)
......... ....+..++.+||+.||+++|+||.++
T Consensus 242 ~~~~~L~~~---~~~~v~~il~~sY~~L~~~lk~c~~~l 277 (277)
T d2a5yb3 242 QLNNKLESR---GLVGVECITPYSYKSLAMALQRCVEVL 277 (277)
T ss_dssp HHHHHHHHH---CSSTTCCCSSSSSSSHHHHHHHHHHTS
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 999997348---678899999998851269999999739
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.88 E-value=6.5e-20 Score=145.10 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=55.3
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87553114404678764347010055765388438998431220742044667645247963441256776555677456
Q 000568 602 QQLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTL 681 (1416)
Q Consensus 602 ~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 681 (1416)
..+..|++|++++++|+.++ .++.+++|++|++++| .++.+|. +++|++|++|++++|. +..++ .++++++|+.|
T Consensus 41 ~~l~~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N-~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~-~l~~l~~L~~L 115 (384)
T d2omza2 41 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGL 115 (384)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCCEE
T ss_pred HHHCCCCEEECCCCCCCCCC-CCCCCCCCCEEECCCC-CCCCCCC-CCCCCCCCCCCCCCCC-CCCCC-CCCCCCCCCCC
T ss_conf 89578789989998987762-4245899998968188-1798863-3477110103013433-32222-11123343334
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.88 E-value=2.5e-19 Score=141.12 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=23.1
Q ss_pred CCCCCCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 055765388438998431220742044667645247963441256776555677456
Q 000568 625 TKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTL 681 (1416)
Q Consensus 625 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 681 (1416)
..+.+|++|++++| .++.+ +.+..|++|++|++++|. +..+|. +++|++|++|
T Consensus 41 ~~l~~l~~L~l~~~-~I~~l-~gl~~L~nL~~L~Ls~N~-l~~l~~-l~~L~~L~~L 93 (384)
T d2omza2 41 TDLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDI 93 (384)
T ss_dssp HHHTTCCEEECCSS-CCCCC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred HHHCCCCEEECCCC-CCCCC-CCCCCCCCCCEEECCCCC-CCCCCC-CCCCCCCCCC
T ss_conf 89578789989998-98776-242458999989681881-798863-3477110103
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.81 E-value=9e-20 Score=144.15 Aligned_cols=56 Identities=27% Similarity=0.341 Sum_probs=25.2
Q ss_pred CEEECCCCCCC---CCCCCCCCCCCCCEEECCC-CCCHHHCHHHHCCCCCCCEEECCCCC
Q ss_conf 14404678764---3470100557653884389-98431220742044667645247963
Q 000568 608 TVLNLSRTNIR---NLPESITKLYNLHTLLLED-CDRLKTLCADIGNLIKLHHLKNSNTI 663 (1416)
Q Consensus 608 ~~L~Ls~~~i~---~lp~~i~~L~~L~~L~L~~-~~~~~~lp~~i~~L~~L~~L~l~~~~ 663 (1416)
+.|+|+++++. .+|++|++|.+|++|++++ |...+.+|.+|++|++|++|++++|.
T Consensus 53 ~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~ 112 (313)
T d1ogqa_ 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC
T ss_pred EEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf 899898998888887984784675335202026543330024311454200110203564
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.80 E-value=1e-16 Score=123.70 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=5.0
Q ss_pred CCCCCCCCEEEECCC
Q ss_conf 267887664887148
Q 000568 986 LLNLSSLREIYIRSC 1000 (1416)
Q Consensus 986 ~~~l~~L~~L~L~~~ 1000 (1416)
|.++++|++|++++|
T Consensus 51 f~~l~~L~~L~l~~n 65 (305)
T d1xkua_ 51 FKNLKNLHTLILINN 65 (305)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred HHCCCCCCCCCCCCC
T ss_conf 604656523112344
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.80 E-value=4.3e-19 Score=139.63 Aligned_cols=126 Identities=14% Similarity=0.058 Sum_probs=54.8
Q ss_pred CEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 18998069842266874125885218962257785334664557887660650248986436689989999356987366
Q 000568 1134 KFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISEC 1213 (1416)
Q Consensus 1134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~ 1213 (1416)
+.+++++|.+....+..+..+..+ .++++++...+.+|..+..+++++.+++.++.....++ ....+++|+.|++++|
T Consensus 177 ~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N 254 (313)
T d1ogqa_ 177 TSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN 254 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf 231022464353324332222222-33333343322222222222221112222222222222-2224554444447657
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 68776752356767556155506789999987779999976514735789
Q 000568 1214 ERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMK 1263 (1416)
Q Consensus 1214 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~ 1263 (1416)
.+...+|..+.++++|++|++++|.+.+..|. +..+ ++|+.+++.+|+
T Consensus 255 ~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L-~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL-QRFDVSAYANNK 302 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG-GGSCGGGTCSSS
T ss_pred EECCCCCHHHHCCCCCCEEECCCCCCCCCCCC-CCCC-CCCCHHHHCCCC
T ss_conf 06660876884799999897958835166898-6667-998978868895
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.78 E-value=7.5e-17 Score=124.64 Aligned_cols=55 Identities=29% Similarity=0.380 Sum_probs=18.1
Q ss_pred EEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCC
Q ss_conf 44046787643470-10055765388438998431220742044667645247963
Q 000568 609 VLNLSRTNIRNLPE-SITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTI 663 (1416)
Q Consensus 609 ~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 663 (1416)
+|+|++|.|+.+|+ +|.++.+|++|++++|......|..|.++++|++|++++|.
T Consensus 35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~ 90 (305)
T d1xkua_ 35 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90 (305)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCCC
T ss_conf 89784991898696576046565231123443445235665279855783156875
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.2e-16 Score=120.47 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC-CCCCCCEEEE
Q ss_conf 951899806984226687412588521896225778533466455788766065024898643668998-9999356987
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGL-PCAKLTRLEI 1210 (1416)
Q Consensus 1132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~-~l~~L~~L~l 1210 (1416)
+|++|++++|.........+..+++|+.+++++|.+....+..+..+++|+.|++++| .+..++...+ .+++|+.+.+
T Consensus 106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l 184 (284)
T d1ozna_ 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLL 184 (284)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCC-CCCCCCHHHHCCCCCCCHHHH
T ss_conf 2778756885443201353320001211020014314458057404340502231417-656625666546563413142
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 36668776752356767556155506789999987779999976514735789
Q 000568 1211 SECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMK 1263 (1416)
Q Consensus 1211 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~ 1263 (1416)
++|.+....|..+..+++|++|++++|.+..+.+..+...+ +|+.|++++|+
T Consensus 185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~-~L~~L~l~~N~ 236 (284)
T d1ozna_ 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYLRLNDNP 236 (284)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT-TCCEEECCSSC
T ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCC
T ss_conf 11434662816766532000233333522100000235546-56889811998
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.5e-16 Score=120.21 Aligned_cols=106 Identities=13% Similarity=0.077 Sum_probs=50.7
Q ss_pred CCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 95189980698422668741258852189622577853346645578876606502489864366899899993569873
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEIS 1211 (1416)
Q Consensus 1132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~ 1211 (1416)
+|+.+++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++++|......|..+..+++|+.|+++
T Consensus 130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~ 209 (284)
T d1ozna_ 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (284)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 12110200143144580574043405022314176566256665465634131421143466281676653200023333
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 66687767523567675561555067
Q 000568 1212 ECERLEALPRGLRNLTCLQHLTIGDV 1237 (1416)
Q Consensus 1212 ~~~~~~~~~~~l~~l~~L~~L~l~~n 1237 (1416)
+|.+....+..+..+++|++|++++|
T Consensus 210 ~N~i~~~~~~~~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 210 ANNLSALPTEALAPLRALQYLRLNDN 235 (284)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 35221000002355465688981199
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=6.3e-16 Score=118.49 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=34.6
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCEEEE
Q ss_conf 75479841288986454102678876648871489821137888988865886706988886823232179888670577
Q 000568 967 KLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCEALKSLPEAWMCETNSSLEILNI 1046 (1416)
Q Consensus 967 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 1046 (1416)
.++.|+|++|.+....+..|.++++|++|++++|.+. .++.+..+++|+.|++++|.+. ..+..+ ..+++|+.|++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~~~l~~L~~L~Ls~N~l~-~~~~~~--~~l~~L~~L~l 107 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQ-SLPLLG--QTLPALTVLDV 107 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEEECCSSCCS-SCCCCT--TTCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC-CCCCCC--CCCCCCCCCCC
T ss_conf 8898988499289859778634565522135665444-4311111223211111222221-111121--22222222222
Q ss_pred CC
Q ss_conf 26
Q 000568 1047 AG 1048 (1416)
Q Consensus 1047 ~~ 1048 (1416)
++
T Consensus 108 ~~ 109 (266)
T d1p9ag_ 108 SF 109 (266)
T ss_dssp CS
T ss_pred CC
T ss_conf 22
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.69 E-value=7.5e-14 Score=104.62 Aligned_cols=51 Identities=24% Similarity=0.159 Sum_probs=32.8
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCC
Q ss_conf 3114404678764347010055765388438998431220742044667645247963
Q 000568 606 VFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTI 663 (1416)
Q Consensus 606 ~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 663 (1416)
.+++|||++++++.+|+. +.+|++|++++| .++.+|.. +.+|+.|++.++.
T Consensus 39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~l~~n~ 89 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPEL---PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNN 89 (353)
T ss_dssp TCSEEECTTSCCSCCCSC---CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSC
T ss_pred CCCEEEECCCCCCCCCCC---CCCCCEEECCCC-CCCCCCCC---HHHHHHHHHHHCC
T ss_conf 998999379998878898---789888989999-79633620---3320332665514
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.6e-16 Score=118.82 Aligned_cols=128 Identities=18% Similarity=0.081 Sum_probs=53.2
Q ss_pred CCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-CCCCCEEEE
Q ss_conf 9518998069842266874125885218962257785334664557887660650248986436689989-999356987
Q 000568 1132 SLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP-CAKLTRLEI 1210 (1416)
Q Consensus 1132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-l~~L~~L~l 1210 (1416)
+|+.|++++|.+... +..+..+++|+.|++++|......+..+..+.+++.|++.++ .+..++...+. +++++.+++
T Consensus 78 ~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l 155 (266)
T d1p9ag_ 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 155 (266)
T ss_dssp TCCEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEECCCCCCCCCCCHHCCC
T ss_conf 321111122222111-112122222222222223110110011222211112212434-210221233322111000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 36668776752356767556155506789999987779999976514735789
Q 000568 1211 SECERLEALPRGLRNLTCLQHLTIGDVLSPERDPEDEDRLPTNLHSLNIDNMK 1263 (1416)
Q Consensus 1211 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~ 1263 (1416)
++|.+....+..+..+++|++|++++|.+..+ |..+..+ .+|+.|++++|+
T Consensus 156 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~-~~L~~L~L~~Np 206 (266)
T d1p9ag_ 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGS-HLLPFAFLHGNP 206 (266)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTT-CCCSEEECCSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CHHHCCC-CCCCEEEECCCC
T ss_conf 01565223720013421242343013978556-8667778-889999836999
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.68 E-value=4.8e-13 Score=99.27 Aligned_cols=40 Identities=28% Similarity=0.193 Sum_probs=19.7
Q ss_pred CCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 653884389984312207420446676452479634412567765
Q 000568 629 NLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFG 673 (1416)
Q Consensus 629 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 673 (1416)
+|+.|+++++ .++.+|+. +++|++|++++|. ++.+|..++
T Consensus 39 ~l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~N~-l~~lp~~~~ 78 (353)
T d1jl5a_ 39 QAHELELNNL-GLSSLPEL---PPHLESLVASCNS-LTELPELPQ 78 (353)
T ss_dssp TCSEEECTTS-CCSCCCSC---CTTCSEEECCSSC-CSSCCCCCT
T ss_pred CCCEEEECCC-CCCCCCCC---CCCCCEEECCCCC-CCCCCCCHH
T ss_conf 9989993799-98878898---7898889899997-963362033
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.5e-12 Score=94.49 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=4.6
Q ss_pred CCCCCCCEEEECCC
Q ss_conf 67887664887148
Q 000568 987 LNLSSLREIYIRSC 1000 (1416)
Q Consensus 987 ~~l~~L~~L~L~~~ 1000 (1416)
.++++|++|++++|
T Consensus 50 ~~l~~L~~L~ls~n 63 (242)
T d1xwdc1 50 SGFGDLEKIEISQN 63 (242)
T ss_dssp TTCTTCCEEEEESC
T ss_pred HCCCHHHHHHHCCC
T ss_conf 14643232110221
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=8.9e-13 Score=97.47 Aligned_cols=85 Identities=20% Similarity=0.130 Sum_probs=33.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCC-CCCCCCCEE
Q ss_conf 995189980698422668741258852189622577853346-645578876606502489864366899-899993569
Q 000568 1131 QSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILP-SGLHNLCQLQRISIWCCGNLVSFSEGG-LPCAKLTRL 1208 (1416)
Q Consensus 1131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~l~~L~~L 1208 (1416)
+++++|++++|.+....+..|..+++|++|++++|.+...++ ..|..+++++++.+..++.+...+... ..+++|+.+
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98899987699189649668614643232110221124201001122222222211111234322222212222222222
Q ss_pred EECCCCC
Q ss_conf 8736668
Q 000568 1209 EISECER 1215 (1416)
Q Consensus 1209 ~l~~~~~ 1215 (1416)
.+++|.+
T Consensus 109 ~l~~~~l 115 (242)
T d1xwdc1 109 LISNTGI 115 (242)
T ss_dssp EEESCCC
T ss_pred CCCHHHH
T ss_conf 3421111
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.9e-14 Score=106.49 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=40.1
Q ss_pred CCCCEEEEECCCC--H-HHHHHHHCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCC
Q ss_conf 9951899806984--2-2668741258852189622577853-346645578876606502489864366-899899993
Q 000568 1131 QSLKFLDVWECPK--L-ESIAERLNNNTSLEVIDIGNCENLK-ILPSGLHNLCQLQRISIWCCGNLVSFS-EGGLPCAKL 1205 (1416)
Q Consensus 1131 ~~L~~L~l~~~~~--~-~~~~~~~~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~l~~L 1205 (1416)
++|+.|++++|.. . ..+...+.++++|+.|++++|..+. .....+..+++|++|++++|+.+..-. .....+++|
T Consensus 148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L 227 (284)
T d2astb2 148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227 (284)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHCCCCC
T ss_conf 11101221355424444434342323222123553223477830333321357687798999997873789997269998
Q ss_pred CEEEECCC
Q ss_conf 56987366
Q 000568 1206 TRLEISEC 1213 (1416)
Q Consensus 1206 ~~L~l~~~ 1213 (1416)
+.|++++|
T Consensus 228 ~~L~l~~~ 235 (284)
T d2astb2 228 KTLQVFGI 235 (284)
T ss_dssp CEEECTTS
T ss_pred CEEEEECC
T ss_conf 98964488
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.47 E-value=1.7e-12 Score=95.63 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=18.7
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 754798412889864541026788766488714898211378889888658867069
Q 000568 967 KLEYLGLSYCQGLVTLPQSLLNLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDC 1023 (1416)
Q Consensus 967 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 1023 (1416)
+|+.|++.+|.+. .++ ++..+++|++|++++|.... +..+..+++++.+.+++|
T Consensus 42 ~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~-~~~l~~l~~l~~l~~~~n 95 (227)
T d1h6ua2 42 GITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAPLKNLTKITELELSGN 95 (227)
T ss_dssp TCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCSC
T ss_pred CCCEEECCCCCCC-CCH-HHHCCCCCCEEECCCCEEEC-CCCCCCCCCCCCCCCCCC
T ss_conf 8689977799997-664-57448888376357853202-543112334320121112
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.45 E-value=4e-12 Score=93.12 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=13.7
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 7887664887148982113788898886588670698
Q 000568 988 NLSSLREIYIRSCSSLVSFPEVALPSKLRLITIWDCE 1024 (1416)
Q Consensus 988 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 1024 (1416)
.+.+|++|.+.+|.+. .++.+..+++|+.|++++|.
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~~l~~l~~L~~L~ls~n~ 74 (227)
T d1h6ua2 39 DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74 (227)
T ss_dssp HHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSC
T ss_pred HCCCCCEEECCCCCCC-CCHHHHCCCCCCEEECCCCE
T ss_conf 8488689977799997-66457448888376357853
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.37 E-value=2.1e-12 Score=94.93 Aligned_cols=196 Identities=14% Similarity=0.174 Sum_probs=110.9
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECC-----CCCHH
Q ss_conf 6770320046799999998328888999938999986898809999999980422314568279999568-----75889
Q 000568 188 NEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-----DFDVI 262 (1416)
Q Consensus 188 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-----~~~~~ 262 (1416)
....||||+++++++.+.. .+++.|+|++|+|||+|++++.... ... ..|+.+.. .....
T Consensus 10 ~~~~f~GR~~el~~l~~~~----------~~~i~i~G~~G~GKTsLl~~~~~~~--~~~---~~~i~~~~~~~~~~~~~~ 74 (283)
T d2fnaa2 10 NRKDFFDREKEIEKLKGLR----------APITLVLGLRRTGKSSIIKIGINEL--NLP---YIYLDLRKFEERNYISYK 74 (283)
T ss_dssp SGGGSCCCHHHHHHHHHTC----------SSEEEEEESTTSSHHHHHHHHHHHH--TCC---EEEEEGGGGTTCSCCCHH
T ss_pred CHHHCCCHHHHHHHHHHCC----------CCEEEEECCCCCCHHHHHHHHHHHC--CCC---EEEEEECCCCCCCCCCHH
T ss_conf 7220789699999998405----------9879998699982999999999977--998---699972145333324399
Q ss_pred HHHHHHHHHHCC--------------C---------------CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHH--
Q ss_conf 999999997028--------------7---------------789787889999999985266478996353354813--
Q 000568 263 RLTKTILRCITK--------------Q---------------TIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYN-- 311 (1416)
Q Consensus 263 ~~~~~i~~~l~~--------------~---------------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-- 311 (1416)
.+...+...... . .....+...+...+.+ ...++.++++|++......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~i~id~~~~~~~~~~ 153 (283)
T d2fnaa2 75 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQ-ASKDNVIIVLDEAQELVKLRG 153 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHH-TCSSCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHCCCCH
T ss_conf 9999999975445555577777777530334344322234100134589999999876-315555456640554133326
Q ss_pred -H-HHHHCCCCCCCCCCCEEEEECCCHHHHHHH-C-----------CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf -3-864114444599994899981436788761-8-----------9880638999903189999982159999999734
Q 000568 312 -D-WVDMSRPLEAGAPGSKIIVTTRNQEVVAIM-G-----------TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKS 377 (1416)
Q Consensus 312 -~-~~~~~~~l~~~~~gs~iivTtR~~~v~~~~-~-----------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~ 377 (1416)
. +..+.... ........+++.+........ . ....+.+++++.+++.+++.+....... ..++
T Consensus 154 ~~~~~~l~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~--~~~~ 230 (283)
T d2fnaa2 154 VNLLPALAYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKD 230 (283)
T ss_dssp CCCHHHHHHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC--CHHH
T ss_conf 99999999998-75311344203565067899997542100010341058862887889999999966545699--9999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 99999999984399858899999875049
Q 000568 378 LEEIGKKIVIKCNGLPLAAKTLGGLLRGK 406 (1416)
Q Consensus 378 ~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 406 (1416)
..+|++.+||+|.++..++..+...
T Consensus 231 ----~~~i~~~~~G~P~~L~~~~~~~~~~ 255 (283)
T d2fnaa2 231 ----YEVVYEKIGGIPGWLTYFGFIYLDN 255 (283)
T ss_dssp ----HHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf ----9999999699799999999999805
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.31 E-value=4.9e-11 Score=85.83 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 88521896225778533466455788766065024898643668998999935698736668776752356767556155
Q 000568 1154 NTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLT 1233 (1416)
Q Consensus 1154 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 1233 (1416)
+.+++.|++++|.+... ..+..+++|++|++++| .+..++. ...+++|+.|++++|......+ +.++++|+.|+
T Consensus 39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~ 112 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 112 (199)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred HCCCCEEECCCCCCCCC--CCCCCCCCCCCCCCCCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCC
T ss_conf 46878998999999775--20213788675754565-5667640-1677522311112222222211--11122322211
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 50678999998777999997651473578998410003679999898887230799326886200497633457878676
Q 000568 1234 IGDVLSPERDPEDEDRLPTNLHSLNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTL 1313 (1416)
Q Consensus 1234 l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~ 1313 (1416)
+++| .......+..++ +|+.|++++|....... +..+++|+.|++.+
T Consensus 113 l~~~--~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~--------l~~~~~L~~L~l~~---------------------- 159 (199)
T d2omxa2 113 LFNN--QITDIDPLKNLT-NLNRLELSSNTISDISA--------LSGLTSLQQLNFSS---------------------- 159 (199)
T ss_dssp CCSS--CCCCCGGGTTCT-TCSEEECCSSCCCCCGG--------GTTCTTCSEEECCS----------------------
T ss_pred CCCC--CCCCCCCCCHHH-HHHHHHHHHHHHCCCCC--------CCCCCCCCCCCCCC----------------------
T ss_conf 1222--222321000122-36776431111002343--------33211111122345----------------------
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 78875361001456567345537545688580882478998878988875444501
Q 000568 1314 PLPATLTYLVIADLPNLERLSSSIFYHQNLTKLKLCNCPKLKYFPEKGLPASLLRL 1369 (1416)
Q Consensus 1314 ~~~~sL~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 1369 (1416)
+.++.++ .+..+++|+.|++++|+ ++.++.....++|++|
T Consensus 160 --------------n~l~~l~-~l~~l~~L~~L~ls~N~-i~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 160 --------------NQVTDLK-PLANLTTLERLDISSNK-VSDISVLAKLTNLESL 199 (199)
T ss_dssp --------------SCCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEE
T ss_pred --------------CCCCCCC-CCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCC
T ss_conf --------------5556770-11679989999787997-9988101278998949
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.30 E-value=6.4e-12 Score=91.75 Aligned_cols=165 Identities=19% Similarity=0.305 Sum_probs=0.0
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55311440467876434701005576538843899843122074204466764524796344125677655567745693
Q 000568 604 LRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEMPLRFGKLTCLQTLCN 683 (1416)
Q Consensus 604 L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~ 683 (1416)
+..|++|+++++.|+.++. +..+.+|++|++++ +.++.++ .+..+++|++|++++|. +..+| .+..+++|+.|
T Consensus 45 L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~-n~i~~l~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L-- 117 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNG-NKLTDIK-PLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSL-- 117 (210)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCS-SCCCCCG-GGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEE--
T ss_pred HCCCCEEECCCCCCCCCHH-HHHCCCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCC-CCCCC-CCCCCCCCCCC--
T ss_conf 5484589782798887444-76489989876989-6025860-11358621201433333-21222-12122211122--
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 59767887651122234335727686057786771122876408999996399984489889999223786510289977
Q 000568 684 FVVGNDRGSRLRELKFLMHLRGTLDISNLENVKHVGDAKEAHLSGKKNLKVLLLRWARNSFDSRVPETETRVLDMLKPHQ 763 (1416)
Q Consensus 684 ~~~~~~~~~~l~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 763 (1416)
.+.-........ +.++++++.+.+.++. .........++
T Consensus 118 ----------------------~l~~~~~~~~~~--------l~~l~~l~~l~~~~n~-----------l~~~~~~~~l~ 156 (210)
T d1h6ta2 118 ----------------------SLEHNGISDING--------LVHLPQLESLYLGNNK-----------ITDITVLSRLT 156 (210)
T ss_dssp ----------------------ECTTSCCCCCGG--------GGGCTTCCEEECCSSC-----------CCCCGGGGGCT
T ss_pred ----------------------CCCCCCCCCCCC--------CCCCCCCCCCCCCCCC-----------CCCCCCCCCCC
T ss_conf ----------------------345653221122--------0111112221122233-----------34543100013
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 944699933189999957689889970299996158999899878868866368507
Q 000568 764 NLEEFCINGYRGTKFPIWLGDSSLSKLVTLKFQYCGMCTSLPSVGQLRSLKHLEVRG 820 (1416)
Q Consensus 764 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~ 820 (1416)
+|+.+.+.++....++.... +++|+.|++++|.+ ..++.+..+++|+.|++++
T Consensus 157 ~L~~l~l~~n~l~~i~~l~~---l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 157 KLDTLSLEDNQISDIVPLAG---LTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp TCSEEECCSSCCCCCGGGTT---CTTCCEEECCSSCC-CBCGGGTTCTTCSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCEEECCCCCC-CCCHHHCCCCCCCEEECCC
T ss_conf 32100134643025645367---89899998979989-9872116999989997118
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.19 E-value=1.2e-08 Score=69.97 Aligned_cols=177 Identities=14% Similarity=0.120 Sum_probs=109.7
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 77032004679999999832888899993899998689880999999998042231456827999956875889999999
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 268 (1416)
+..++||+.+++++.++|...-...+...+.+.|+|++|+|||++|+.+++.......+ ..+|+..............+
T Consensus 15 p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (276)
T d1fnna2 15 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA-RFVYINGFIYRNFTAIIGEI 93 (276)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC-EEEEEETTTCCSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC-CEEEECCHHHHHHHHHHHHH
T ss_conf 88788779999999999999985789888816888989998999999999997544688-57873230011246665456
Q ss_pred HHHHCCCCC-CCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHH---HCCCCCC-CCCCCEEEEECCCHHHHHH
Q ss_conf 997028778-97878899999999852--664789963533548133864---1144445-9999489998143678876
Q 000568 269 LRCITKQTI-DDSDLNLLQEELNKQLS--RKKFLLVLDDVWNENYNDWVD---MSRPLEA-GAPGSKIIVTTRNQEVVAI 341 (1416)
Q Consensus 269 ~~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~---~~~~l~~-~~~gs~iivTtR~~~v~~~ 341 (1416)
....+.... ...........+.+.+. ......++|+++......... +...... ......+|.++........
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 173 (276)
T d1fnna2 94 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 173 (276)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHH
T ss_conf 77643345553254357899999987520654332036888753543106888874044335652488625876454431
Q ss_pred H-------CCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 1-------898806389999031899999821
Q 000568 342 M-------GTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 342 ~-------~~~~~~~l~~L~~~e~~~lf~~~~ 366 (1416)
. .....+.+.+++.++.++++.+++
T Consensus 174 ~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~ 205 (276)
T d1fnna2 174 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 205 (276)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCHHCCCCCHHHHHHHHHHHHHH
T ss_conf 13036655110110344123888999999999
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.10 E-value=2.9e-10 Score=80.68 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=47.7
Q ss_pred CCCCCCEEEEECCCCHH-HHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC-CCCCCC
Q ss_conf 89995189980698422-6687412588521896225778533466455788766065024898643668998-999935
Q 000568 1129 LPQSLKFLDVWECPKLE-SIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGL-PCAKLT 1206 (1416)
Q Consensus 1129 l~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~-~l~~L~ 1206 (1416)
+|+++++|++++|.+.. .....|..+++|+.|++++|.+....+..+..+++|++|++++ +.+..++...+ .+++|+
T Consensus 27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L~ 105 (192)
T d1w8aa_ 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCC
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECC-CCCCCCCHHHHHCCCCCC
T ss_conf 8978788984898775530200257876272130136322121212221122221010035-534434979980797465
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 6987366687767523567675561555067
Q 000568 1207 RLEISECERLEALPRGLRNLTCLQHLTIGDV 1237 (1416)
Q Consensus 1207 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 1237 (1416)
+|++++|.+....+..|..+++|++|++++|
T Consensus 106 ~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N 136 (192)
T d1w8aa_ 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
T ss_conf 5245774535359778568753342000364
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=1.1e-09 Score=76.82 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=114.6
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 77032004679999999832888899993899998689880999999998042231456827999956875889999999
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 268 (1416)
-.++||.++.++++..|+.... ...+.++|++|+||||+|+.+++.......-....-++.+.......+...+
T Consensus 14 ~~d~ig~~~~~~~L~~~~~~~~------~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~ 87 (224)
T d1sxjb2 14 LSDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQI 87 (224)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHH
T ss_pred HHHHCCCHHHHHHHHHHHHCCC------CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEHHHHH
T ss_conf 9990297999999999998699------8749998899987054699999997256643221111134557852116678
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCC-HHHHHHH-CCCC
Q ss_conf 9970287789787889999999985266478996353354813386411444459999489998143-6788761-8988
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAIM-GTAP 346 (1416)
Q Consensus 269 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~ 346 (1416)
.......... ...+.-++|+|+++.........+...+.......++++++.. ..+.... +...
T Consensus 88 ~~~~~~~~~~--------------~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~ 153 (224)
T d1sxjb2 88 KHFAQKKLHL--------------PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 153 (224)
T ss_dssp HHHHHBCCCC--------------CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHHHCCC--------------CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8788762247--------------77635999982443232157787752011233333665314743021067887777
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 06389999031899999821599999997349999999998439985889
Q 000568 347 AYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAA 396 (1416)
Q Consensus 347 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 396 (1416)
.+++++++.++....+.+.+..+..... .+....|++.|+|.+..+
T Consensus 154 ~i~~~~~~~~~i~~~l~~i~~~e~~~i~----~~~l~~I~~~s~Gd~R~a 199 (224)
T d1sxjb2 154 ILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQA 199 (224)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHCCCCHHHH
T ss_conf 7653133224567888777774046789----999999999869969999
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.08 E-value=3.1e-10 Score=80.46 Aligned_cols=108 Identities=16% Similarity=0.053 Sum_probs=56.7
Q ss_pred CCCCEEEECCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 85218962257785334-66455788766065024898643668998999935698736668776752356767556155
Q 000568 1155 TSLEVIDIGNCENLKIL-PSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEISECERLEALPRGLRNLTCLQHLT 1233 (1416)
Q Consensus 1155 ~~L~~L~Ls~n~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 1233 (1416)
+++++|+|++|.+...+ +..|..+++|+.|+++++......+.....+++|+.|++++|.+....+..|.++++|++|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 78788984898775530200257876272130136322121212221122221010035534434979980797465524
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 506789999987779999976514735789
Q 000568 1234 IGDVLSPERDPEDEDRLPTNLHSLNIDNMK 1263 (1416)
Q Consensus 1234 l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~ 1263 (1416)
+++|.+..+.+..+..++ +|++|++++++
T Consensus 109 L~~N~l~~i~~~~f~~l~-~L~~l~L~~N~ 137 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLN-SLTSLNLASNP 137 (192)
T ss_dssp CCSSCCCEECTTSSTTCT-TCCEEECTTCC
T ss_pred CCCCCCCCCCHHHHCCCC-CCCCCCCCCCC
T ss_conf 577453535977856875-33420003644
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=2.7e-09 Score=74.26 Aligned_cols=180 Identities=13% Similarity=0.131 Sum_probs=110.8
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 70320046799999998328888999938999986898809999999980422314568279999568758899999999
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 269 (1416)
.++||.++.++.+..|+.... .+.+.++|++|+||||+|+.+++..........+.-.+.+...+.........
T Consensus 14 ~divg~~~~~~~L~~~i~~~~------~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 87 (227)
T d1sxjc2 14 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIK 87 (227)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred HHCCCCHHHHHHHHHHHHCCC------CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCHH
T ss_conf 983596999999999997699------98599988998775589999999851677764157731555687543210001
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCH-HHHHH-HCCCCE
Q ss_conf 9702877897878899999999852664789963533548133864114444599994899981436-78876-189880
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAI-MGTAPA 347 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~ 347 (1416)
....... ...+++-.+|+|+++.........+...+......+++++++... .+... ......
T Consensus 88 ~~~~~~~---------------~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~ 152 (227)
T d1sxjc2 88 DFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 152 (227)
T ss_dssp HHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HCCCCCC---------------CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 0111000---------------2577718999966320002378999988631120023201267087759999988754
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 63899990318999998215999999973499999999984399858
Q 000568 348 YQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 348 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 394 (1416)
+++.+++.++...++.+.+..+..... .+....|++.++|...
T Consensus 153 i~~~~~~~~~i~~~l~~I~~~e~i~i~----~~~l~~i~~~s~Gd~R 195 (227)
T d1sxjc2 153 FRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMR 195 (227)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHCCCCHH
T ss_conf 012356520001102122111124589----8999999998499699
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=5e-08 Score=65.76 Aligned_cols=184 Identities=14% Similarity=0.122 Sum_probs=111.9
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC-------------------CE
Q ss_conf 70320046799999998328888999938999986898809999999980422314568-------------------27
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD-------------------LK 250 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-------------------~~ 250 (1416)
.+++|.++.++.+..++.... -...+.++|++|+||||+|+.+++......... .+
T Consensus 12 ~dlig~~~~~~~L~~~i~~~~-----~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 86 (239)
T d1njfa_ 12 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 86 (239)
T ss_dssp GGSCSCHHHHHHHHHHHHTTC-----CCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTE
T ss_pred HHCCCHHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf 881595999999999998599-----870598888998758999999999846855666675554247999974798707
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 99995687588999999999702877897878899999999852664789963533548133864114444599994899
Q 000568 251 AWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKII 330 (1416)
Q Consensus 251 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii 330 (1416)
..+..+...... ..+.+.+.+.... ..++..++|+|+++..+......++..+.......++|
T Consensus 87 ~~~~~~~~~~i~-~ir~~~~~~~~~~----------------~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~i 149 (239)
T d1njfa_ 87 IEIDAASRTKVE-DTRDLLDNVQYAP----------------ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 149 (239)
T ss_dssp EEEETTCSSSHH-HHHHHHHSCCCSC----------------SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEE
T ss_pred EEECCHHCCCHH-HHHHHHHHHHHCC----------------CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 996112007899-9999999997465----------------25998799997811089999999999985689886999
Q ss_pred EECCCH-HHHHHH-CCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHH-HHHHH
Q ss_conf 981436-788761-8988063899990318999998215999999973499999999984399858-89999
Q 000568 331 VTTRNQ-EVVAIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 399 (1416)
Q Consensus 331 vTtR~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 399 (1416)
++|.+. .+.... +....+.+.+++.++....+...+..+..... ++....|++.++|.+- |+..+
T Consensus 150 l~tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~----~~~l~~i~~~s~Gd~R~ain~l 217 (239)
T d1njfa_ 150 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 217 (239)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHTTTCHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9738856367657612102222467678766688787764314789----9999999997699799999999
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1e-11 Score=90.37 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=38.8
Q ss_pred CCCEEECCCCCCCCC--CCCCCCCCCCCEEECCCCCCH----HHCHHHHCCCCCCCEEECCCCC
Q ss_conf 311440467876434--701005576538843899843----1220742044667645247963
Q 000568 606 VFTVLNLSRTNIRNL--PESITKLYNLHTLLLEDCDRL----KTLCADIGNLIKLHHLKNSNTI 663 (1416)
Q Consensus 606 ~L~~L~Ls~~~i~~l--p~~i~~L~~L~~L~L~~~~~~----~~lp~~i~~L~~L~~L~l~~~~ 663 (1416)
.|++||+++++|+.. ..-+..+++|++|+|++|... ..++..+...++|++|++++|.
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~ 66 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 8777982089588689999997677999998289999889999999998539998889795985
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.99 E-value=3.4e-09 Score=73.53 Aligned_cols=195 Identities=11% Similarity=0.125 Sum_probs=114.3
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 70320046799999998328888999938999986898809999999980422314-56827999956875889999999
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQD-HFDLKAWTCVSNDFDVIRLTKTI 268 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i 268 (1416)
.+++|++..++.+..|+... ..+.+.++|++|+||||+|+.+++...... .......+..+...........+
T Consensus 12 ~diig~~~~~~~l~~~i~~~------~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (237)
T d1sxjd2 12 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV 85 (237)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHH
T ss_pred HHCCCCHHHHHHHHHHHHCC------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHEECCCCCCCHHHHHHH
T ss_conf 87269399999999999869------988599989999984999999999970976334321220021135606789999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCC-HHHHHHH-CCCC
Q ss_conf 9970287789787889999999985266478996353354813386411444459999489998143-6788761-8988
Q 000568 269 LRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAIM-GTAP 346 (1416)
Q Consensus 269 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~ 346 (1416)
.............. .+......+.-++|+|+++......+..+...+.......++++|+.. ..+.... ....
T Consensus 86 -~~~~~~~~~~~~~~----~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~ 160 (237)
T d1sxjd2 86 -KNFARLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 160 (237)
T ss_dssp -HHHHHSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred -HHHHHHHHHHHHHH----HHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf -88765444324678----7761356673699995513367777888763012222333321224664222331110001
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCH-HHHHHH
Q ss_conf 06389999031899999821599999997349999999998439985-889999
Q 000568 347 AYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAKTL 399 (1416)
Q Consensus 347 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 399 (1416)
.+++.+++.++...++.+.+..+...- + .++.+.|++.++|.+ -|+..+
T Consensus 161 ~i~f~~~~~~~~~~~L~~i~~~e~i~i-~---~~~l~~ia~~s~gd~R~ai~~L 210 (237)
T d1sxjd2 161 KFRFKALDASNAIDRLRFISEQENVKC-D---DGVLERILDISAGDLRRGITLL 210 (237)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCC-C---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHCCCC-C---HHHHHHHHHHCCCCHHHHHHHH
T ss_conf 102333333211001011455526757-8---9999999998599899999999
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=9.5e-13 Score=97.26 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=14.9
Q ss_pred CCCCCEEECCCCCCC-----CCCCCCCCCCCCCEEECCCC
Q ss_conf 553114404678764-----34701005576538843899
Q 000568 604 LRVFTVLNLSRTNIR-----NLPESITKLYNLHTLLLEDC 638 (1416)
Q Consensus 604 L~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~ 638 (1416)
++.+++|+|++|.|+ .|...+..+++|++|++++|
T Consensus 26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N 65 (460)
T d1z7xw1 26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65 (460)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 7799999828999988999999999853999888979598
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.92 E-value=4.2e-09 Score=72.94 Aligned_cols=181 Identities=12% Similarity=0.104 Sum_probs=109.2
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC-CEEEEEECCCCCHHHHHHH
Q ss_conf 770320046799999998328888999938999986898809999999980422314568-2799995687588999999
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFD-LKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 267 (1416)
-.+++|.+..++++..|+... ..+.+.++|++|+||||+|+.+++.... ..+. ..+-++++...+...+...
T Consensus 23 ~~diig~~~~~~~l~~~i~~~------~~~~lll~Gp~G~GKTtla~~iak~l~~-~~~~~~~~e~n~s~~~~~~~~~~~ 95 (231)
T d1iqpa2 23 LDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGINVIREK 95 (231)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHHHTTHHH
T ss_pred HHHCCCCHHHHHHHHHHHHCC------CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 999139399999999999859------9976999789997487999999999873-146777158756766663488888
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCC-HHHHHHH-CCC
Q ss_conf 99970287789787889999999985266478996353354813386411444459999489998143-6788761-898
Q 000568 268 ILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRN-QEVVAIM-GTA 345 (1416)
Q Consensus 268 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~ 345 (1416)
+....... .....++.++++|+++......+..+...+........+|.||.. ..+.... ...
T Consensus 96 ~~~~~~~~---------------~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~ 160 (231)
T d1iqpa2 96 VKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 160 (231)
T ss_dssp HHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHHHH---------------HCCCCCCEEEEEHHHHHCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHHHHHCCC
T ss_conf 88887510---------------015787228861434431214789876411247764478861487665657684731
Q ss_pred CEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 80638999903189999982159999999734999999999843998588
Q 000568 346 PAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLA 395 (1416)
Q Consensus 346 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 395 (1416)
..+.+.+.+.++....+.+.+......-. .+..+.|++.++|....
T Consensus 161 ~~i~~~~~~~~~~~~~l~~~~~~e~i~i~----~~~l~~I~~~~~gdiR~ 206 (231)
T d1iqpa2 161 AIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRR 206 (231)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHCCCCHHH
T ss_conf 21012334304677899888998399989----99999999983997999
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=9.2e-10 Score=77.33 Aligned_cols=124 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-CCCCCEE
Q ss_conf 999518998069842266874125885218962257785334664557887660650248986436689989-9993569
Q 000568 1130 PQSLKFLDVWECPKLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLP-CAKLTRL 1208 (1416)
Q Consensus 1130 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-l~~L~~L 1208 (1416)
+..+++|++++|.+... +..+..+++|+.|++++|.+... ..+..+++|++|+++ ++.+..++.+.+. +++|+.|
T Consensus 17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls-~N~i~~l~~~~~~~l~~L~~L 92 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTEL 92 (162)
T ss_dssp TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTCCEE
T ss_pred CCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCHHHHHCC-CCCCCCCCCCCCCCCCCCCCC
T ss_conf 57484897889978865-76200414599898979978764--774457613064310-213457776322334534434
Q ss_pred EECCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCC---CCCCCCCCCCCCEEE
Q ss_conf 873666877675-23567675561555067899999---877799999765147
Q 000568 1209 EISECERLEALP-RGLRNLTCLQHLTIGDVLSPERD---PEDEDRLPTNLHSLN 1258 (1416)
Q Consensus 1209 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~~L~~L~ 1258 (1416)
++++|.+..... ..+..+++|++|++++|.+.... +..+..+| +|+.|+
T Consensus 93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp-~L~~LD 145 (162)
T d1a9na_ 93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-QVRVLD 145 (162)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-TCSEET
T ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCC-CCCEEC
T ss_conf 20300016654211001365320664079963456106999998789-958337
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.84 E-value=1.5e-06 Score=55.83 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=102.5
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCC---CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC----CCCCCEEEEEECCCCC
Q ss_conf 677032004679999999832888---899993899998689880999999998042231----4568279999568758
Q 000568 188 NEAKVYGRETEKKEIVELLLRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ----DHFDLKAWTCVSNDFD 260 (1416)
Q Consensus 188 ~~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~ 260 (1416)
.+..++||+.++++|.+.+..... .......++.++|++|+|||++++.+++..... .......++.+.....
T Consensus 14 ~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (287)
T d1w5sa2 14 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 93 (287)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
T ss_conf 89988878999999999999999749988885348996789998999999999999875415556784166303333465
Q ss_pred HHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHC--CCCEEEEECCCCCC------CHHHH---HHHCCCCCC--CCCC
Q ss_conf 89999999997028778-97878899999999852--66478996353354------81338---641144445--9999
Q 000568 261 VIRLTKTILRCITKQTI-DDSDLNLLQEELNKQLS--RKKFLLVLDDVWNE------NYNDW---VDMSRPLEA--GAPG 326 (1416)
Q Consensus 261 ~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~------~~~~~---~~~~~~l~~--~~~g 326 (1416)
................. ...........+.+... +...++++|.++.. ..+.. ..+...+.. ....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 173 (287)
T d1w5sa2 94 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 173 (287)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHCCCC
T ss_conf 04678887653043233345127889999999998546766541257888515665542678988999874320104565
Q ss_pred CE-EEEECCCHHHH-------H-HHCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 48-99981436788-------7-61898806389999031899999821
Q 000568 327 SK-IIVTTRNQEVV-------A-IMGTAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 327 s~-iivTtR~~~v~-------~-~~~~~~~~~l~~L~~~e~~~lf~~~~ 366 (1416)
.. |++++...... . .......+.+++++.++..+++..++
T Consensus 174 ~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~ 222 (287)
T d1w5sa2 174 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 222 (287)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHCCCHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 1477624308999999862520112322065225775999999876667
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.79 E-value=6.2e-09 Score=71.81 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=26.3
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCCCCCCC
Q ss_conf 440467876434701005576538843899843122074204466764524796344125
Q 000568 609 VLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTISLQEM 668 (1416)
Q Consensus 609 ~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~l 668 (1416)
+|+|++|+++.+|. ++.+.+|++|++++| .++.+|..+..+++|++|++++|. +..+
T Consensus 2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~-i~~l 58 (124)
T d1dcea3 2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENV 58 (124)
T ss_dssp EEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCC
T ss_pred EEECCCCCCCCCCC-CCCCCCCCEEECCCC-CCCCCHHHHHHHHCCCCCCCCCCC-CCCC
T ss_conf 89868998988710-105898898979787-168652156554313545324321-1235
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=1.3e-08 Score=69.56 Aligned_cols=193 Identities=12% Similarity=0.140 Sum_probs=103.8
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC----CCCCCCEEEEEECCCC-----
Q ss_conf 7703200467999999983288889999389999868988099999999804223----1456827999956875-----
Q 000568 189 EAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRV----QDHFDLKAWTCVSNDF----- 259 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~----- 259 (1416)
-.+++|+++..+.+..++.... ...-+.++|++|+||||+|+.+++.... ....+...+...+...
T Consensus 10 ~~diig~~~~~~~L~~~~~~~~-----~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (252)
T d1sxje2 10 LNALSHNEELTNFLKSLSDQPR-----DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 84 (252)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT-----CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHHCCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 9883583999999999997699-----87859988999998899999999762276422222123444346663112211
Q ss_pred ----------------CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCC
Q ss_conf ----------------8899999999970287789787889999999985266478996353354813386411444459
Q 000568 260 ----------------DVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAG 323 (1416)
Q Consensus 260 ----------------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~ 323 (1416)
.................. ... ..-......+.-++++|+++......+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~ 158 (252)
T d1sxje2 85 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDF--QDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 158 (252)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCEEEECCCCCCCCCEEEEHHHHHHHHHH----HHH--HHCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 0477631000010445775224310223434331----001--2114666787249994243334543111221002213
Q ss_pred CCCCEEEEECCCHH-HHHH-HCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99948999814367-8876-189880638999903189999982159999999734999999999843998588
Q 000568 324 APGSKIIVTTRNQE-VVAI-MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLA 395 (1416)
Q Consensus 324 ~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 395 (1416)
....++|+||.+.+ +... .+....+++.+++.++..+++...+-.+...... +++.+.|++.+.|.+..
T Consensus 159 ~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~---~~~l~~i~~~s~Gd~R~ 229 (252)
T d1sxje2 159 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRV 229 (252)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHH
T ss_pred CCCCCCEEEECCCCCHHHHHHCCHHEEEECCCCHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHCCCCHHH
T ss_conf 566430001021110025442100024303533046899999999983999896---99999999986994999
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=2.3e-08 Score=67.96 Aligned_cols=59 Identities=32% Similarity=0.419 Sum_probs=21.9
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCHHHHCCCCCCCEEECCCCC
Q ss_conf 7553114404678764347010055765388438998431220742044667645247963
Q 000568 603 QLRVFTVLNLSRTNIRNLPESITKLYNLHTLLLEDCDRLKTLCADIGNLIKLHHLKNSNTI 663 (1416)
Q Consensus 603 ~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 663 (1416)
.+..|++|++++|.|+.+|+.++.+.+|++|++++| .++.+| .+..+++|++|++++|.
T Consensus 18 ~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 18 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp GGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCC-CCCCCC-CCCCCCCCCEEECCCCC
T ss_conf 589889897978716865215655431354532432-112357-41233555768888986
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=1.3e-07 Score=63.10 Aligned_cols=195 Identities=14% Similarity=0.110 Sum_probs=103.9
Q ss_pred CCEEEEEHHHHHHHHHHHHCC-----------CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECC
Q ss_conf 770320046799999998328-----------888999938999986898809999999980422314568279999568
Q 000568 189 EAKVYGRETEKKEIVELLLRD-----------DLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN 257 (1416)
Q Consensus 189 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 257 (1416)
-.+++|.+..+++|..|+... ...+.+..+.+.++|++|+||||+|+.+++.... ...+++.+.
T Consensus 13 ~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~-----~~~~~~~~~ 87 (253)
T d1sxja2 13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-----DILEQNASD 87 (253)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-----EEEEECTTS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-----HHHCCCCCC
T ss_conf 999669899999999999962530023432320257888744999879999888999999999875-----120134432
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHH---HHHHHCCCCCCCCCCCEEEEECC
Q ss_conf 758899999999970287789787889999999985266478996353354813---38641144445999948999814
Q 000568 258 DFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYN---DWVDMSRPLEAGAPGSKIIVTTR 334 (1416)
Q Consensus 258 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---~~~~~~~~l~~~~~gs~iivTtR 334 (1416)
..+...+ ................... ........++..++++|+++..... .+..+....... ...+++|+.
T Consensus 88 ~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~--~~~ii~i~~ 162 (253)
T d1sxja2 88 VRSKTLL-NAGVKNALDNMSVVGYFKH--NEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICN 162 (253)
T ss_dssp CCCHHHH-HHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEES
T ss_pred CHHHHHH-HHHHHHHHHCCHHHHHHHH--HHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCC
T ss_conf 2116889-9999887631212101334--3201455665137776301111100013467776540123--422211135
Q ss_pred --CH-HHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCH-HHHH
Q ss_conf --36-788761898806389999031899999821599999997349999999998439985-8899
Q 000568 335 --NQ-EVVAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLP-LAAK 397 (1416)
Q Consensus 335 --~~-~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~ 397 (1416)
.. .+.........+++.+.+.++....+...+..+.-...+ +....|++.++|.. -|+.
T Consensus 163 ~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~----~~l~~i~~~s~GDiR~ai~ 225 (253)
T d1sxja2 163 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVIN 225 (253)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHH
T ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHCCCCHHHHHH
T ss_conf 55521135324403653114531467889999999980999999----9999999967970999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=98.70 E-value=6e-07 Score=58.57 Aligned_cols=176 Identities=16% Similarity=0.122 Sum_probs=96.5
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 70320046799999998328888999938999986898809999999980422314568279999568758899999999
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 269 (1416)
.++||.+..++++..|+..... .+...+-+.++|++|+|||++|+.+++... .. ...++.+.......+ ..++
T Consensus 9 ~divGqe~~~~~l~~~i~~~~~-~~~~~~~~L~~GPpGtGKT~lA~~la~~~~--~~---~~~~~~~~~~~~~~~-~~~~ 81 (238)
T d1in4a2 9 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASELQ--TN---IHVTSGPVLVKQGDM-AAIL 81 (238)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHHT--CC---EEEEETTTCCSHHHH-HHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHCCC--CC---CCCCCCCCCCCHHHH-HHHH
T ss_conf 9908959999999999997885-388777489879999738899999985038--88---533257442248889-9998
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCC------------------CCCCCCCEEEE
Q ss_conf 970287789787889999999985266478996353354813386411444------------------45999948999
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPL------------------EAGAPGSKIIV 331 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l------------------~~~~~gs~iiv 331 (1416)
.. ..++..+++|.+.......-+.+.... ........+|.
T Consensus 82 ~~----------------------~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 139 (238)
T d1in4a2 82 TS----------------------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 139 (238)
T ss_dssp HH----------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred HH----------------------HCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEE
T ss_conf 75----------------------43588247778988406777642140244145445437600244445788769999
Q ss_pred -ECCCHHHHHH--HCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf -8143678876--189880638999903189999982159999999734999999999843998588999
Q 000568 332 -TTRNQEVVAI--MGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKT 398 (1416)
Q Consensus 332 -TtR~~~v~~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 398 (1416)
|++....... ......+.++..+.++...++...+....... .++....+++.++|.+-.+..
T Consensus 140 at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~l~~i~~~s~gd~R~ai~ 205 (238)
T d1in4a2 140 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI----EDAAAEMIAKRSRGTPRIAIR 205 (238)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHTSTTCHHHHHH
T ss_pred ECCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHCCCCHHHHHH
T ss_conf 547875555431133007998447877877777777653011002----579999999967998999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=98.69 E-value=7.5e-07 Score=57.93 Aligned_cols=178 Identities=19% Similarity=0.140 Sum_probs=96.4
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 70320046799999998328888999938999986898809999999980422314568279999568758899999999
Q 000568 190 AKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 269 (1416)
.++||.+..++++..++..... .+...+-+.++|++|+||||+|+.+++.... . ..+++.+....... ....+
T Consensus 9 ddivGq~~~~~~L~~~i~~~~~-~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~--~---~~~~~~~~~~~~~~-~~~~~ 81 (239)
T d1ixsb2 9 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGV--N---LRVTSGPAIEKPGD-LAAIL 81 (239)
T ss_dssp GGSCSCHHHHHHHHHHHHHHTT-SSSCCCCEEEECCTTSCHHHHHHHHHHHHTC--C---EEEEETTTCCSHHH-HHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--C---EEECCCCCCCCCHH-HHHHH
T ss_conf 8948989999999999997873-5888873898897998788899999998498--7---47546875343214-68998
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCC------------------CCCCCCCEEEE
Q ss_conf 970287789787889999999985266478996353354813386411444------------------45999948999
Q 000568 270 RCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPL------------------EAGAPGSKIIV 331 (1416)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l------------------~~~~~gs~iiv 331 (1416)
. +.+ +.+..+++|.++......-+.+.... ....+...++.
T Consensus 82 ~--------------------~~~-~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 140 (239)
T d1ixsb2 82 A--------------------NSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 140 (239)
T ss_dssp H--------------------TTC-CTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEE
T ss_pred H--------------------HHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEE
T ss_conf 8--------------------510-3887344311001104478750012433321211046556543346899779996
Q ss_pred -ECCCHHH--HHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf -8143678--8761898806389999031899999821599999997349999999998439985889999
Q 000568 332 -TTRNQEV--VAIMGTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAKTL 399 (1416)
Q Consensus 332 -TtR~~~v--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 399 (1416)
|++.... +........+.+...+.++...+....+........ .+....|++.++|.+-.+..+
T Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~----~~~l~~ia~~s~gd~R~a~~~ 207 (239)
T d1ixsb2 141 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRL 207 (239)
T ss_dssp EESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBC----HHHHHHHHHHTTSSHHHHHHH
T ss_pred ECCCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHCCCCHHHHHHH
T ss_conf 3068333441010122145675205745555788999998487652----678999999769999999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=1.8e-06 Score=55.37 Aligned_cols=182 Identities=12% Similarity=0.077 Sum_probs=106.5
Q ss_pred EEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 00467999999983288889999389999868988099999999804223145682799995687588999999999702
Q 000568 194 GRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCIT 273 (1416)
Q Consensus 194 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 273 (1416)
+.+...+++.+.+.... -...+.++|++|+||||+|+.++...-...... +-.+... ...+.+.....
T Consensus 6 w~~~~~~~l~~~~~~~~-----l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~---~~~~~~~----~~~~~i~~~~~ 73 (207)
T d1a5ta2 6 WLRPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQG---HKSCGHC----RGCQLMQAGTH 73 (207)
T ss_dssp GGHHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---TBCCSCS----HHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC---CCCCCCC----CHHHHHHHCCC
T ss_conf 21999999999998599-----673798889998759999999998210101232---1223342----01556543034
Q ss_pred CC--------CCCCCCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCH-HHH
Q ss_conf 87--------789787889999999985-----2664789963533548133864114444599994899981436-788
Q 000568 274 KQ--------TIDDSDLNLLQEELNKQL-----SRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVV 339 (1416)
Q Consensus 274 ~~--------~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~ 339 (1416)
.. .......+++. .+.+.+ .+++-++|+|+++..+......++..+.....+.++|+||++. .+.
T Consensus 74 ~~~~~~~~~~~~~~i~~~~ir-~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll 152 (207)
T d1a5ta2 74 PDYYTLAPEKGKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLL 152 (207)
T ss_dssp TTEEEECCCTTCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred CCCCHHHHHHCCCCCCCCHHH-HHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 311012343134533321146-7765321100357640477313442000014999999985011110455306865510
Q ss_pred HHH-CCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 761-8988063899990318999998215999999973499999999984399858899
Q 000568 340 AIM-GTAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPLAAK 397 (1416)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 397 (1416)
... +....+.+.+++.++....+.+... .+ ++.+..|++.++|.|..+-
T Consensus 153 ~tI~SRc~~i~~~~~~~~~~~~~L~~~~~------~~---~~~~~~i~~~s~Gs~r~al 202 (207)
T d1a5ta2 153 ATLRSRCRLHYLAPPPEQYAVTWLSREVT------MS---QDALLAALRLSAGSPGAAL 202 (207)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHCC------CC---HHHHHHHHHHTTTCHHHHH
T ss_pred HHHCCEEEEEECCCCCHHHHHHHHHHCCC------CC---HHHHHHHHHHCCCCHHHHH
T ss_conf 32002157882689999999999997489------99---9999999997699999999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=5.5e-07 Score=58.82 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=95.9
Q ss_pred EEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCC---CCCC-CCCEEEE-EECCCCCHHHHH
Q ss_conf 0320046799999998328888999938999986898809999999980422---3145-6827999-956875889999
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR---VQDH-FDLKAWT-CVSNDFDVIRLT 265 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~-f~~~~wv-~~s~~~~~~~~~ 265 (1416)
.++||+++++++...|.... -.-+.++|++|+|||+++..++.... +... .+..+|. +.+.
T Consensus 19 ~~igRd~Ei~~l~~iL~r~~------k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~-------- 84 (268)
T d1r6bx2 19 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS-------- 84 (268)
T ss_dssp CCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------
T ss_pred CCCCHHHHHHHHHHHHHCCC------CCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECH--------
T ss_conf 66380999999999995476------6896798889886779999999999817845000354127864056--------
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCCC--------CHHHHHHHCCCCCCCCCCCEEEEECCCH
Q ss_conf 9999970287789787889999999985-266478996353354--------8133864114444599994899981436
Q 000568 266 KTILRCITKQTIDDSDLNLLQEELNKQL-SRKKFLLVLDDVWNE--------NYNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 266 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
-+.+. ....+.++....+...+ ..++.++++|++..- +..+...+..+.... ..-++|.||...
T Consensus 85 -----liag~-~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r-g~i~vIgatT~e 157 (268)
T d1r6bx2 85 -----LLAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 157 (268)
T ss_dssp -------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHH
T ss_pred -----HHCCC-CCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHHC-CCCEEEEECCHH
T ss_conf -----75067-63005899999999986126784688433698862777788641179876488747-987599957999
Q ss_pred HHHHHHCC-------CCEEECCCCCHHHHHHHHHHHH
Q ss_conf 78876189-------8806389999031899999821
Q 000568 337 EVVAIMGT-------APAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 337 ~v~~~~~~-------~~~~~l~~L~~~e~~~lf~~~~ 366 (1416)
++...... ...+.+++.+.+++..++....
T Consensus 158 ey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~ 194 (268)
T d1r6bx2 158 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 194 (268)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999986167888652100368989999999999866
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.3e-07 Score=61.28 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=14.5
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 99935698736668776752356767556155506789999
Q 000568 1202 CAKLTRLEISECERLEALPRGLRNLTCLQHLTIGDVLSPER 1242 (1416)
Q Consensus 1202 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1242 (1416)
+++|+.|++++|.+....+..|..+++|++|++++|.+..+
T Consensus 55 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l 95 (156)
T d2ifga3 55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95 (156)
T ss_dssp CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 66667216202124774201112455433332267878515
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=98.54 E-value=1.9e-06 Score=55.26 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=88.9
Q ss_pred EEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC---CC-CCCCCCEEEE-EECCCCCHHHHH
Q ss_conf 032004679999999832888899993899998689880999999998042---23-1456827999-956875889999
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH---RV-QDHFDLKAWT-CVSNDFDVIRLT 265 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~-~~~f~~~~wv-~~s~~~~~~~~~ 265 (1416)
.++||+.++++++..|..... .-+.++|++|+|||+++..++... .+ ..-.+.++|. +++. +.
T Consensus 23 ~~~gr~~ei~~~~~~L~r~~k------~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~------l~ 90 (387)
T d1qvra2 23 PVIGRDEEIRRVIQILLRRTK------NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS------LL 90 (387)
T ss_dssp CCCSCHHHHHHHHHHHHCSSC------CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCCCCHHHHHHHHHHHHCCCC------CCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEHHH------HH
T ss_conf 874808999999999824889------997687999988999999999999808999788696689955766------65
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHH-CC-CCEEEEECCCCCCC-------HHHHHHHCCCCCCCCCCCEEEEECCCH
Q ss_conf 9999970287789787889999999985-26-64789963533548-------133864114444599994899981436
Q 000568 266 KTILRCITKQTIDDSDLNLLQEELNKQL-SR-KKFLLVLDDVWNEN-------YNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 266 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~-~~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
.+. .-..+.++....+...+ .. .++++++|++...- ..+...+..|.... ..-++|.+|...
T Consensus 91 -------ag~-~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r-g~~~~I~~tT~~ 161 (387)
T d1qvra2 91 -------AGA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTLD 161 (387)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-TCCCEEEEECHH
T ss_pred -------CCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHC-CCCCEEEECCHH
T ss_conf -------266-74136899999999985058996698724088884277787741389999999737-885166636899
Q ss_pred HHHHHHC-------CCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 7887618-------98806389999031899999821
Q 000568 337 EVVAIMG-------TAPAYQLKRLSTDDCLSVFTQHS 366 (1416)
Q Consensus 337 ~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~ 366 (1416)
++.. .. ..+.+.+++.+.+++..++....
T Consensus 162 ey~~-~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~ 197 (387)
T d1qvra2 162 EYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLK 197 (387)
T ss_dssp HHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HHHH-HCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9987-63367999824611279986788999999999
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.53 E-value=6e-10 Score=78.57 Aligned_cols=247 Identities=13% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCC----HHHHHHHHCCCCCCCEEEECCCCCCCC----------CCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 9951899806984----226687412588521896225778533----------46645578876606502489864366
Q 000568 1131 QSLKFLDVWECPK----LESIAERLNNNTSLEVIDIGNCENLKI----------LPSGLHNLCQLQRISIWCCGNLVSFS 1196 (1416)
Q Consensus 1131 ~~L~~L~l~~~~~----~~~~~~~~~~l~~L~~L~Ls~n~~~~~----------~~~~l~~l~~L~~L~L~~~~~l~~~~ 1196 (1416)
.+++.|++++|.+ ...+...+...++|+.++++++..... +...+...++|++|++++|..-..-.
T Consensus 31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 110 (344)
T d2ca6a1 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 110 (344)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99788978498377899999999998589988888877754334542106787999887547775633000013455433
Q ss_pred CCCCC----CCCCCEEEECCCCCCCCCCCCC-------------CCCCCCCEEEEECCCCCCCCCCCCC---CCCCCCCE
Q ss_conf 89989----9993569873666877675235-------------6767556155506789999987779---99997651
Q 000568 1197 EGGLP----CAKLTRLEISECERLEALPRGL-------------RNLTCLQHLTIGDVLSPERDPEDED---RLPTNLHS 1256 (1416)
Q Consensus 1197 ~~~~~----l~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~l~~n~~~~~~~~~~~---~l~~~L~~ 1256 (1416)
..... +++|+.|++++|.+.......+ ...+.|+.+++++|.+.......+. ....+|+.
T Consensus 111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~ 190 (344)
T d2ca6a1 111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 190 (344)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred CCHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 31011100234321000002466665431111212222110001467642111013650135543322111123332133
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 47357899841000367999989888723079932688620049763345787867678875361001456567345537
Q 000568 1257 LNIDNMKSWKSFIEWGQGGGGLNRFSSLQQLRIRGRDQDVVSFPPEEDIGLGLGTTLPLPATLTYLVIADLPNLERLSSS 1336 (1416)
Q Consensus 1257 L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~ 1336 (1416)
|++++| .+...........++..+++|+.|++++|..... ....+...
T Consensus 191 L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~-------------------------------g~~~L~~~ 238 (344)
T d2ca6a1 191 VKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------------------------------GSSALAIA 238 (344)
T ss_dssp EECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------------------------------HHHHHHHH
T ss_pred CCCCCC-CCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCC-------------------------------CCCCCCCC
T ss_conf 543332-2222223200243321101211222333322222-------------------------------22234443
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCC--------CCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEECCEECCCC
Q ss_conf 54568858088247899887898887--------5444501003880369964117985454337646599899131821
Q 000568 1337 IFYHQNLTKLKLCNCPKLKYFPEKGL--------PASLLRLEISGCPLIEERYIKDGGQYRHLLTYIPCIIINGRPVDLD 1408 (1416)
Q Consensus 1337 ~~~~~~L~~L~l~~~~~l~~~~~~~~--------~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1408 (1416)
+...++|+.|++++|. ++.-....+ ..+|++|++++|..-.+-+..-...-+.+.+.+.+++++++.+..+
T Consensus 239 l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 239 LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCCCCCHHHHHHCCC-CCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 3232211110300475-671566788877631568888989898986980899999999970389999897879808986
Q ss_pred CC
Q ss_conf 10
Q 000568 1409 LK 1410 (1416)
Q Consensus 1409 ~~ 1410 (1416)
.+
T Consensus 318 ~~ 319 (344)
T d2ca6a1 318 DD 319 (344)
T ss_dssp SH
T ss_pred CH
T ss_conf 25
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=4e-07 Score=59.74 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=39.4
Q ss_pred CCCEEEEECCC-CHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 95189980698-42266874125885218962257785334664557887660650248986436689989999356987
Q 000568 1132 SLKFLDVWECP-KLESIAERLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIWCCGNLVSFSEGGLPCAKLTRLEI 1210 (1416)
Q Consensus 1132 ~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l 1210 (1416)
+|++|++.+++ +....+..|..+++|+.|++++|.+....+..|..+++|++|+|++ +.+..++.+.+...+|+.|++
T Consensus 32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L 110 (156)
T d2ifga3 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVL 110 (156)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEEC
T ss_pred CCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCC-CCCCCCCHHHHCCCCCCCCCC
T ss_conf 6574316898664436921225666667216202124774201112455433332267-878515745633532124335
Q ss_pred CCCCC
Q ss_conf 36668
Q 000568 1211 SECER 1215 (1416)
Q Consensus 1211 ~~~~~ 1215 (1416)
++|++
T Consensus 111 ~~Np~ 115 (156)
T d2ifga3 111 SGNPL 115 (156)
T ss_dssp CSSCC
T ss_pred CCCCC
T ss_conf 79863
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=5.4e-06 Score=52.19 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=96.4
Q ss_pred CEEEEEHHHHHHHHHHH---HCCCC---CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHH
Q ss_conf 70320046799999998---32888---8999938999986898809999999980422314568279999568758899
Q 000568 190 AKVYGRETEKKEIVELL---LRDDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 263 (1416)
.+++|.++.++++.+.+ ..... -+....+.+.++|++|+|||++|+.+++.. ..+ .+.+..++-.+
T Consensus 12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~--~~~---~~~i~~~~l~~--- 83 (256)
T d1lv7a_ 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVP---FFTISGSDFVE--- 83 (256)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCC---EEEECSCSSTT---
T ss_pred HHHHCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHC--CCC---EEEEEHHHHHH---
T ss_conf 9981639999999999999879999998699988867866899888228999999982--998---79988699426---
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC----------HHHH----HHHCCCCCC--CCCCC
Q ss_conf 9999999702877897878899999999852664789963533548----------1338----641144445--99994
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN----------YNDW----VDMSRPLEA--GAPGS 327 (1416)
Q Consensus 264 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~----~~~~~~l~~--~~~gs 327 (1416)
.........+...+...-...+.+|++||++.-- .... ..+...+.. ...+-
T Consensus 84 ------------~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v 151 (256)
T d1lv7a_ 84 ------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (256)
T ss_dssp ------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred ------------CCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf ------------00107899999999999975998999977566575678988887489999999999995387777998
Q ss_pred EEEEECCCHH-HHHHH-C---CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 8999814367-88761-8---988063899990318999998215999999973499999999984399858
Q 000568 328 KIIVTTRNQE-VVAIM-G---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 328 ~iivTtR~~~-v~~~~-~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 394 (1416)
-||.||.+.. +...+ . -...+.++..+.++-.++++....... .....++. .+++.+.|..-
T Consensus 152 ~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~-~~~~~~~~----~la~~t~G~s~ 218 (256)
T d1lv7a_ 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDIDAA----IIARGTPGFSG 218 (256)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCCHH----HHHHTCTTCCH
T ss_pred EEEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC-CCCCCCHH----HHHHHCCCCCH
T ss_conf 999807993107985768987877987799599999999998425998-68656999----99986899899
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=9.1e-07 Score=57.36 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=85.3
Q ss_pred EEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCC---C-CCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 0320046799999998328888999938999986898809999999980422---3-14568279999568758899999
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR---V-QDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~-~~~f~~~~wv~~s~~~~~~~~~~ 266 (1416)
..+||+++++++...|..... .-+.++|.+|+|||+++..++.... + ..--+..+|.- +...+.
T Consensus 23 ~~igRd~Ei~~l~~iL~r~~k------~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~l-----d~~~Li- 90 (195)
T d1jbka_ 23 PVIGRDEEIRRTIQVLQRRTK------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-----DMGALV- 90 (195)
T ss_dssp CCCSCHHHHHHHHHHHTSSSS------CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-----CHHHHH-
T ss_pred CCCCCHHHHHHHHHHHHCCCC------CCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEE-----EHHHHH-
T ss_conf 872809999999999953588------87399835875447999999999980899978818569996-----699986-
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHH-C-CCCEEEEECCCCCCC-------HHHHHHHCCCCCCCCCCCEEEEECCCHH
Q ss_conf 999970287789787889999999985-2-664789963533548-------1338641144445999948999814367
Q 000568 267 TILRCITKQTIDDSDLNLLQEELNKQL-S-RKKFLLVLDDVWNEN-------YNDWVDMSRPLEAGAPGSKIIVTTRNQE 337 (1416)
Q Consensus 267 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~iivTtR~~~ 337 (1416)
.+. ....+.++....+...+ . ..+.++++|++..-- ..+...+..+.... ..-++|.||...+
T Consensus 91 ------Ag~-~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r-g~l~~IgatT~ee 162 (195)
T d1jbka_ 91 ------AGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDE 162 (195)
T ss_dssp ------TTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-TSCCEEEEECHHH
T ss_pred ------CCC-CCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCHHH
T ss_conf ------458-74077999999999987317980899726089984378777752389999999857-9954985189999
Q ss_pred HHHHHC-------CCCEEECCCCCHHHHHHHH
Q ss_conf 887618-------9880638999903189999
Q 000568 338 VVAIMG-------TAPAYQLKRLSTDDCLSVF 362 (1416)
Q Consensus 338 v~~~~~-------~~~~~~l~~L~~~e~~~lf 362 (1416)
+..... ....+.++..+.+++..++
T Consensus 163 y~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 163 YRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHCCHHHHHCCCEEECCCCCHHHHHHHH
T ss_conf 99998738899963987545898989999985
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.39 E-value=3.3e-10 Score=80.35 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=13.3
Q ss_pred HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 41258852189622577853346645578876606502
Q 000568 1150 RLNNNTSLEVIDIGNCENLKILPSGLHNLCQLQRISIW 1187 (1416)
Q Consensus 1150 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~ 1187 (1416)
.+..+++|+.|++++|.+.. ++ .+..+++|+.|+++
T Consensus 43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls 78 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLG 78 (198)
T ss_dssp HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECC
T ss_pred HHHCCCCCCEEECCCCCCCC-CC-CCCCCCCCCCHHHC
T ss_conf 77626046151994468998-64-42478253573413
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=98.39 E-value=5.4e-06 Score=52.17 Aligned_cols=180 Identities=12% Similarity=0.132 Sum_probs=92.9
Q ss_pred CEEEEEHHHHHHHHHHH---HCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHH
Q ss_conf 70320046799999998---3288---88999938999986898809999999980422314568279999568758899
Q 000568 190 AKVYGRETEKKEIVELL---LRDD---LRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIR 263 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L---~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 263 (1416)
.+++|.++.+++|.+.+ .... ..+...++-+.++|++|+|||++|+.+++.. ..+ .+.++.+ .
T Consensus 9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~--~~~---~~~i~~~------~ 77 (247)
T d1ixza_ 9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RVP---FITASGS------D 77 (247)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--TCC---EEEEEHH------H
T ss_pred HHHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC--CCC---EEEEEHH------H
T ss_conf 9971579999999999999879999997599988648876689888359999999873--997---7997869------9
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC----------HH----HHHHHCCCCCC--CCCCC
Q ss_conf 9999999702877897878899999999852664789963533548----------13----38641144445--99994
Q 000568 264 LTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNEN----------YN----DWVDMSRPLEA--GAPGS 327 (1416)
Q Consensus 264 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~----~~~~~~~~l~~--~~~gs 327 (1416)
+.. . .-......+...+...-...+.+|++||++.-- .. ....+...+.. ...+.
T Consensus 78 l~~----~-----~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v 148 (247)
T d1ixza_ 78 FVE----M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 148 (247)
T ss_dssp HHH----S-----CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred HHH----C-----CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 646----2-----4538999999999999976997999977366474678998887589999999999996387778998
Q ss_pred EEEEECCCHH-HHHHH---C-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 8999814367-88761---8-988063899990318999998215999999973499999999984399858
Q 000568 328 KIIVTTRNQE-VVAIM---G-TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 328 ~iivTtR~~~-v~~~~---~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 394 (1416)
-||.||.... +...+ + -...+.++..+.++-.++++........ .....+. .+++.+.|..-
T Consensus 149 ivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~-~~~~~~~----~la~~t~g~s~ 215 (247)
T d1ixza_ 149 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVDLA----LLAKRTPGFVG 215 (247)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-CTTCCHH----HHHHTCTTCCH
T ss_pred EEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCC-CCCCCHH----HHHHHCCCCCH
T ss_conf 9998079940069967589878579997996999999999987506577-6546899----99977889889
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.35 E-value=3.1e-10 Score=80.51 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=4.5
Q ss_pred CCCCCCCCEEECCC
Q ss_conf 00557653884389
Q 000568 624 ITKLYNLHTLLLED 637 (1416)
Q Consensus 624 i~~L~~L~~L~L~~ 637 (1416)
+..+.+|++|++++
T Consensus 66 l~~l~~L~~L~Ls~ 79 (198)
T d1m9la_ 66 LSGMENLRILSLGR 79 (198)
T ss_dssp HHHHTTCCEEECCE
T ss_pred CCCCCCCCCHHHCC
T ss_conf 24782535734135
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=1.7e-05 Score=48.88 Aligned_cols=185 Identities=12% Similarity=0.122 Sum_probs=97.8
Q ss_pred CEEEEEHHHHHHHHHHHHC----CCC---CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHH
Q ss_conf 7032004679999999832----888---899993899998689880999999998042231456827999956875889
Q 000568 190 AKVYGRETEKKEIVELLLR----DDL---RNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 262 (1416)
.+++|.+..+++|.+.+.. .+. .+-...+-+.++|++|+|||++|+.+++.. ..+ .+.+..+.
T Consensus 4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~--~~~---~~~i~~~~----- 73 (258)
T d1e32a2 4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGPE----- 73 (258)
T ss_dssp GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHT--TCE---EEEECHHH-----
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCE---EEEEECHH-----
T ss_conf 66310999999999999988319999986799988646876699888308999999874--883---79997304-----
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH-------HH----HHHHCCCCCC--CCCCCEE
Q ss_conf 999999997028778978788999999998526647899635335481-------33----8641144445--9999489
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENY-------ND----WVDMSRPLEA--GAPGSKI 329 (1416)
Q Consensus 263 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~----~~~~~~~l~~--~~~gs~i 329 (1416)
+ ... ........+...+...-...+.+|++||++..-. .. ...+...... ...+.-|
T Consensus 74 -l--------~~~-~~g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv 143 (258)
T d1e32a2 74 -I--------MSK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 143 (258)
T ss_dssp -H--------TTS-CTTHHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEE
T ss_pred -H--------CCC-CCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf -3--------025-456178888999999986499499852111322578877770689998775001101234688117
Q ss_pred EEECCCHHHH-HHH-C---CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHH-HHHHH
Q ss_conf 9981436788-761-8---988063899990318999998215999999973499999999984399858-89999
Q 000568 330 IVTTRNQEVV-AIM-G---TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL-AAKTL 399 (1416)
Q Consensus 330 ivTtR~~~v~-~~~-~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 399 (1416)
|.||...... ... . -...+.++..+.++-.++|........ ......+ ..|++.+.|.-- -|..+
T Consensus 144 i~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~-~~~~~~~----~~la~~t~G~s~adl~~l 214 (258)
T d1e32a2 144 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDL----EQVANETHGHVGADLAAL 214 (258)
T ss_dssp EEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSC-BCTTCCH----HHHHHHCTTCCHHHHHHH
T ss_pred EEECCCCCCCCHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-CCCCCCH----HHHHHCCCCCCHHHHHHH
T ss_conf 9757993102524542463023237899998899987322045763-3455303----444420667789999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=98.34 E-value=1.6e-05 Score=49.03 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=85.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 38999986898809999999980422314568279999568758899999999970287789787889999999985266
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRK 296 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 296 (1416)
...+.|+|++|+|||.|++.+++.. ......+++++.. .....+...+... .... +.+.+ ..
T Consensus 36 ~n~l~l~G~~G~GKTHLl~A~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~----~~~~~-~~ 97 (213)
T d1l8qa2 36 YNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMY-KS 97 (213)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHH-HT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH--CCCCCCEEEECHH------HHHHHHHHHHHCC-----CHHH----HHHHH-HH
T ss_conf 8857998889983999999999874--4676504884437------8799999998716-----6266----78987-62
Q ss_pred CEEEEECCCCCCC-HHHHHH-HCCCCCC-CCCCCEEEEECCCH---------HHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 4789963533548-133864-1144445-99994899981436---------7887618988063899990318999998
Q 000568 297 KFLLVLDDVWNEN-YNDWVD-MSRPLEA-GAPGSKIIVTTRNQ---------EVVAIMGTAPAYQLKRLSTDDCLSVFTQ 364 (1416)
Q Consensus 297 ~~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~ 364 (1416)
--++++||++... ...|+. +...+.. ...|..||+|++.. ++..++....++.++ .++++-.+++++
T Consensus 98 ~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~ 176 (213)
T d1l8qa2 98 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKE 176 (213)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEEC-CCCHHHHHHHHH
T ss_conf 1301011265505865778899999998763166389954875100134326788886185689978-882799999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 21599999997349999999998439
Q 000568 365 HSLDSRDFSSNKSLEEIGKKIVIKCN 390 (1416)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~~ 390 (1416)
.+-... ...++ ++..-|++++.
T Consensus 177 ~a~~rg-l~l~~---~v~~yl~~~~~ 198 (213)
T d1l8qa2 177 KLKEFN-LELRK---EVIDYLLENTK 198 (213)
T ss_dssp HHHHTT-CCCCH---HHHHHHHHHCS
T ss_pred HHHHCC-CCCCH---HHHHHHHHHCC
T ss_conf 999829-99999---99999998568
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.03 E-value=7.6e-06 Score=51.18 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=93.3
Q ss_pred CEEEEEHHHHHHHHHHHH----CCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHH
Q ss_conf 703200467999999983----288---8899993899998689880999999998042231456827999956875889
Q 000568 190 AKVYGRETEKKEIVELLL----RDD---LRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~----~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 262 (1416)
.+++|.++.+++|.+.+. ... ..+-...+-+.++|++|.|||++|+.++... ..+| +.++ ..
T Consensus 7 ~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~--~~~~-----~~~~----~~ 75 (265)
T d1r7ra3 7 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANF-----ISIK----GP 75 (265)
T ss_dssp SSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHT--TCEE-----EEEC----HH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCE-----EEEE----HH
T ss_conf 99667899999999999999639999986799988757887899876304778878771--8947-----9988----79
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHH----------H----HHHHCCCCCC--CCCC
Q ss_conf 9999999970287789787889999999985266478996353354813----------3----8641144445--9999
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYN----------D----WVDMSRPLEA--GAPG 326 (1416)
Q Consensus 263 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~----------~----~~~~~~~l~~--~~~g 326 (1416)
.+. . .........+...+...-...+.++++||++.--.. . ...+...+.. ...+
T Consensus 76 ~l~--------~-~~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 146 (265)
T d1r7ra3 76 ELL--------T-MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 146 (265)
T ss_dssp HHH--------T-SCTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------C
T ss_pred HHH--------H-CCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 952--------5-3165158999999999986398435687546324557876788737999999999999628677799
Q ss_pred CEEEEECCCHH-HHHHH---C-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 48999814367-88761---8-988063899990318999998215999999973499999999984399858
Q 000568 327 SKIIVTTRNQE-VVAIM---G-TAPAYQLKRLSTDDCLSVFTQHSLDSRDFSSNKSLEEIGKKIVIKCNGLPL 394 (1416)
Q Consensus 327 s~iivTtR~~~-v~~~~---~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 394 (1416)
--+|.||...+ +...+ + ....++++..+.++-.++|+....... .....++ .++++++.|...
T Consensus 147 v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~-~~~~~~l----~~la~~t~g~s~ 214 (265)
T d1r7ra3 147 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDL----EFLAKMTNGFSG 214 (265)
T ss_dssp CEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-----CCCC----HHHHHHHCSSCC
T ss_pred EEEEEECCCCHHCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC-CHHHHHH----HHHHHCCCCCCH
T ss_conf 8999917992227997807877647999566078889999999960577-1024368----999825899999
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.94 E-value=9.1e-05 Score=44.00 Aligned_cols=154 Identities=14% Similarity=0.134 Sum_probs=73.4
Q ss_pred CEEEEEHHHHHHHHHHHH-------CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHH
Q ss_conf 703200467999999983-------2888899993899998689880999999998042231456827999956875889
Q 000568 190 AKVYGRETEKKEIVELLL-------RDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 190 ~~~vGr~~~~~~l~~~L~-------~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 262 (1416)
..++|..++++.+.+... .. .....+-+.++|++|+|||++|+.+++.. ..+ .+.++.+....
T Consensus 9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~---~~~p~~~vLL~GppGtGKT~la~alA~~~--~~~---~~~i~~~~~~~-- 78 (246)
T d1d2na_ 9 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES--NFP---FIKICSPDKMI-- 78 (246)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH--TCS---EEEEECGGGCT--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCEEEEEECCCCCCHHHHHHHHHHCC--CCC---CCCCCCCCCCC--
T ss_conf 698476879999999999999998636---88998079988969998899999986201--002---33345652235--
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC----------CHHHHHHHCCCCCC-CCCCCE--E
Q ss_conf 9999999970287789787889999999985266478996353354----------81338641144445-999948--9
Q 000568 263 RLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNE----------NYNDWVDMSRPLEA-GAPGSK--I 329 (1416)
Q Consensus 263 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~~~~~~~l~~-~~~gs~--i 329 (1416)
+ .........+...+....+..+.++++|+++.- .......+...+.. ...+.+ |
T Consensus 79 -----------g-~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 146 (246)
T d1d2na_ 79 -----------G-FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 146 (246)
T ss_dssp -----------T-CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -----------C-CCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf -----------6-5421122444445655553242223310256676513454412478999999986077765450145
Q ss_pred EEECCCHHHHHHH---CC-CCEEECCCCCH-HHHHHHHHHH
Q ss_conf 9981436788761---89-88063899990-3189999982
Q 000568 330 IVTTRNQEVVAIM---GT-APAYQLKRLST-DDCLSVFTQH 365 (1416)
Q Consensus 330 ivTtR~~~v~~~~---~~-~~~~~l~~L~~-~e~~~lf~~~ 365 (1416)
|.||......... +. ...+.++.++. ++.++.+...
T Consensus 147 i~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l~~~ 187 (246)
T d1d2na_ 147 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL 187 (246)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH
T ss_pred EECCCCHHHCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 53248832256102018663388559910599999999742
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.70 E-value=0.0004 Score=39.73 Aligned_cols=132 Identities=9% Similarity=-0.021 Sum_probs=78.3
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEC-CCCCHHHHHHHHHHHHCC
Q ss_conf 799999998328888999938999986898809999999980422--31456827999956-875889999999997028
Q 000568 198 EKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHR--VQDHFDLKAWTCVS-NDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 198 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~ 274 (1416)
+++-+.+++... ....+.++|++|+|||++|..+.+... ...|.| +.++... ....+.. .+++.+.+..
T Consensus 2 ~~~~l~~~i~~~------~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D-~~~i~~~~~~I~Id~-IR~i~~~~~~ 73 (198)
T d2gnoa2 2 QLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNY 73 (198)
T ss_dssp HHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTS
T ss_pred HHHHHHHHHHCC------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC-EEEEECCCCCCCHHH-HHHHHHHHHH
T ss_conf 789999999669------98559988989988899999999998434567998-899807767899899-9999999961
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCH-HHHHHH-CCCCEEECCC
Q ss_conf 77897878899999999852664789963533548133864114444599994899981436-788761-8988063899
Q 000568 275 QTIDDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ-EVVAIM-GTAPAYQLKR 352 (1416)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~ 352 (1416)
... .+++-++|+|+++..+...++.++..+.....++.+|++|.+. .+.... +....+.+.+
T Consensus 74 ~~~----------------~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~ 137 (198)
T d2gnoa2 74 SPE----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNV 137 (198)
T ss_dssp CCS----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred CCC----------------CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHCHHHHHCCEEEEECCC
T ss_conf 754----------------5898799994731036666647888773789885222206995668788735227776799
Q ss_pred C
Q ss_conf 9
Q 000568 353 L 353 (1416)
Q Consensus 353 L 353 (1416)
.
T Consensus 138 p 138 (198)
T d2gnoa2 138 P 138 (198)
T ss_dssp C
T ss_pred C
T ss_conf 3
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00024 Score=41.22 Aligned_cols=119 Identities=11% Similarity=0.066 Sum_probs=63.8
Q ss_pred EEEEEHHHHHHHHHHHHC---CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 032004679999999832---88889999389999868988099999999804223145682799995687588999999
Q 000568 191 KVYGRETEKKEIVELLLR---DDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~---~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 267 (1416)
.++|-++.++.+...+.. .-...+....++..+|+.|+|||.||+.++... +...+-++.+.-.+...
T Consensus 23 ~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l-----~~~~i~~d~s~~~~~~~---- 93 (315)
T d1r6bx3 23 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDMSEYMERHT---- 93 (315)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-----TCEEEEEEGGGCSSSSC----
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHC-----CCCEEEECCCCCCCHHH----
T ss_conf 064859999999999999972678888876589997787500699999998633-----67706741544455446----
Q ss_pred HHHHHCCCCCCCCCHH-HHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHCCCCC
Q ss_conf 9997028778978788-9999999985-2664789963533548133864114444
Q 000568 268 ILRCITKQTIDDSDLN-LLQEELNKQL-SRKKFLLVLDDVWNENYNDWVDMSRPLE 321 (1416)
Q Consensus 268 i~~~l~~~~~~~~~~~-~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~~~~~l~ 321 (1416)
...+.+.... ... .....+...+ .....++.+|+++..+.+-|..+...+.
T Consensus 94 -~~~l~g~~~g--y~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~~V~~~lLqild 146 (315)
T d1r6bx3 94 -VSRLIGAPPG--YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMD 146 (315)
T ss_dssp -CSSSCCCCSC--SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred -HHHHCCCCCC--CCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf -6652146787--5011468703377773854302212223016337665677621
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.46 E-value=0.00019 Score=41.90 Aligned_cols=122 Identities=14% Similarity=0.199 Sum_probs=62.7
Q ss_pred EEEEEHHHHHHHHHHHHCC---CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 0320046799999998328---8889999389999868988099999999804223145682799995687588999999
Q 000568 191 KVYGRETEKKEIVELLLRD---DLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKT 267 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~---~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 267 (1416)
.++|.++.++.+...+... -........++..+|+.|+|||.+|+.++... -+.-...+-++.+.-.+.....+
T Consensus 24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l--~~~~~~~~~~~~~~~~~~~~~~~- 100 (315)
T d1qvra3 24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKHAVSR- 100 (315)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSSGGGGG-
T ss_pred EEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCEEEEECCCCCCCHHHHH-
T ss_conf 270879999999999999865789988876699997888624899999999983--58875348873155454215665-
Q ss_pred HHHHHCCCC-C-CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCC
Q ss_conf 999702877-8-97878899999999852664789963533548133864114444
Q 000568 268 ILRCITKQT-I-DDSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLE 321 (1416)
Q Consensus 268 i~~~l~~~~-~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~ 321 (1416)
+ ++.+. . .......+...++ +....++++|+++..+.+-++.+...+.
T Consensus 101 L---~g~~~gyvG~~~~~~l~~~~~---~~p~~Vvl~DEieK~~~~v~~~ll~~l~ 150 (315)
T d1qvra3 101 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDEIEKAHPDVFNILLQILD 150 (315)
T ss_dssp C-----------------CHHHHHH---HCSSEEEEESSGGGSCHHHHHHHHHHHT
T ss_pred H---CCCCCCCCCCCCCCHHHHHHH---HCCCCEEEEEHHHHCCHHHHHHHHHHHC
T ss_conf 1---489998767466784899998---4998379971475407899989999861
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=97.27 E-value=0.0019 Score=35.22 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=65.2
Q ss_pred EEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 03200467999999983288889999389999868988099999999804223145682799995687588999999999
Q 000568 191 KVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILR 270 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 270 (1416)
+|||....++++.+.+..... .+.+ |.|.|..|+|||++|+.++.... ... ...+-+.+. ..+.......+..
T Consensus 1 ~~v~~S~~~~~~~~~~~~~a~---~~~p-vlI~Ge~GtGK~~~A~~ih~~s~-~~~-~~~~~~~~~-~~~~~~~~~~lfg 73 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKLSD-RSK-EPFVALNVA-SIPRDIFEAELFG 73 (247)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHHST-TTT-SCEEEEETT-TSCHHHHHHHHHC
T ss_pred CEEECCHHHHHHHHHHHHHHC---CCCC-EEEECCCCCCHHHHHHHHHHHCC-CCC-CCCCCCHHH-HHHHCCCHHHHCC
T ss_conf 958629999999999999968---8997-89989998179999999999658-765-332021023-4310112887628
Q ss_pred HHCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCC------CC-----CCCCEEEEECCC
Q ss_conf 70287789-7878899999999852664789963533548133864114444------59-----999489998143
Q 000568 271 CITKQTID-DSDLNLLQEELNKQLSRKKFLLVLDDVWNENYNDWVDMSRPLE------AG-----APGSKIIVTTRN 335 (1416)
Q Consensus 271 ~l~~~~~~-~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~------~~-----~~gs~iivTtR~ 335 (1416)
.-...... ......+ +.. .+.=.+++|+++..+......+...+. .+ ....|+|.||..
T Consensus 74 ~~~~~~~~~~~~~~g~---l~~---a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~ 144 (247)
T d1ny5a2 74 YEKGAFTGAVSSKEGF---FEL---ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 144 (247)
T ss_dssp BCTTSSTTCCSCBCCH---HHH---TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCCCCCCCCCCH---HHC---CCCCEEEEECHHHCCHHHHHHHHHHHHHCCEEECCCCCCEECCEEEEEECCC
T ss_conf 5357767753355888---772---3899799958375999999999999975987878999702337599993397
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.0038 Score=33.17 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=53.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCH--HHHHHHHHHHHCCCCC---CCCCHHHHHHH
Q ss_conf 999389999868988099999999804223145682799995687588--9999999997028778---97878899999
Q 000568 214 DGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV--IRLTKTILRCITKQTI---DDSDLNLLQEE 288 (1416)
Q Consensus 214 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~~~~ 288 (1416)
...+.|+.++|+.|+||||.+.+++..... ....+.+-..+.+.. .+.++...+.++.+.. ...+.......
T Consensus 6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~ 82 (211)
T d2qy9a2 6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFD 82 (211)
T ss_dssp SCTTEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 999979999899999989999999999997---79947998232136661204555434338862113568779999999
Q ss_pred HHHHHCCCCE-EEEECCCC
Q ss_conf 9998526647-89963533
Q 000568 289 LNKQLSRKKF-LLVLDDVW 306 (1416)
Q Consensus 289 l~~~l~~~~~-LlVlDdv~ 306 (1416)
..+....+.+ ++++|=.-
T Consensus 83 ~~~~a~~~~~d~ilIDTaG 101 (211)
T d2qy9a2 83 AIQAAKARNIDVLIADTAG 101 (211)
T ss_dssp HHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHCCCCEEEECCCC
T ss_conf 9999987699889965688
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.0003 Score=40.53 Aligned_cols=60 Identities=27% Similarity=0.215 Sum_probs=34.0
Q ss_pred CCCCCCEEECCCCCCCCCC---CCCCCCCCCCEEECCCCCCHHHCHH-HHCCCCCCCEEECCCCC
Q ss_conf 7553114404678764347---0100557653884389984312207-42044667645247963
Q 000568 603 QLRVFTVLNLSRTNIRNLP---ESITKLYNLHTLLLEDCDRLKTLCA-DIGNLIKLHHLKNSNTI 663 (1416)
Q Consensus 603 ~L~~L~~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~ 663 (1416)
.+..|++|+|++|.|+.++ ..+..+++|++|++++| .+..++. ......+|+.|++++|.
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred HCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCC-CCCCCHHHHHHHCCCCCEEECCCCC
T ss_conf 487878863777666677315889865885610004357-2134234422203310426648997
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.00 E-value=0.00072 Score=38.02 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4679999999832888899993899998689880999999998042
Q 000568 196 ETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 196 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
.+...+.++.+..... ....++.+.++|++|+|||++|+.++...
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~P~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 12 ENRLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp HHHHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999999984152-78999799988979988999999999986
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.95 E-value=0.0042 Score=32.93 Aligned_cols=86 Identities=19% Similarity=0.063 Sum_probs=57.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCC-----CCCCHHHHHHH
Q ss_conf 9993899998689880999999998042231456827999956875889999999997028778-----97878899999
Q 000568 214 DGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTI-----DDSDLNLLQEE 288 (1416)
Q Consensus 214 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~ 288 (1416)
-+..++.-|+|++|+|||++|.+++..... .-..++|++.-..++... ++.++.... .....++....
T Consensus 57 ~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~--~g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~ 129 (269)
T d1mo6a1 57 LPRGRVIEIYGPESSGKTTVALHAVANAQA--AGGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEI 129 (269)
T ss_dssp BCSSSEEEEECSSSSSHHHHHHHHHHHHHH--TTCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCHHH-----HHHHCCCHHHEEEECCCCHHHHHHH
T ss_conf 666336999648874889999999998754--898899998976679999-----9980998899589669989999999
Q ss_pred HHHHHC-CCCEEEEECCCC
Q ss_conf 999852-664789963533
Q 000568 289 LNKQLS-RKKFLLVLDDVW 306 (1416)
Q Consensus 289 l~~~l~-~~~~LlVlDdv~ 306 (1416)
+..... ++.-|+|+|.+-
T Consensus 130 ~~~l~~~~~~~liIiDSi~ 148 (269)
T d1mo6a1 130 ADMLIRSGALDIVVIDSVA 148 (269)
T ss_dssp HHHHHHTTCEEEEEEECST
T ss_pred HHHHHHCCCCCEEEEECCC
T ss_conf 9999855998789993302
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.0032 Score=33.69 Aligned_cols=84 Identities=19% Similarity=0.082 Sum_probs=54.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCC-----CCCCHHHHHHHH
Q ss_conf 993899998689880999999998042231456827999956875889999999997028778-----978788999999
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTI-----DDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 289 (1416)
+..+++-|+|++|+|||++|.+++.... ..-..++|++.-..++... ++.++.... .....++..+.+
T Consensus 52 ~~g~itei~G~~gsGKTtl~l~~~~~~q--~~g~~~vyidtE~~~~~~~-----a~~~Gvd~d~v~~~~~~~~E~~~~~i 124 (263)
T d1u94a1 52 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 124 (263)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCCCCCHHH-----HHHHCCCHHHEEEECCCCHHHHHHHH
T ss_conf 6735899805777478999999999987--0898799986544548999-----99839987997996289899999999
Q ss_pred HHHHC-CCCEEEEECCC
Q ss_conf 99852-66478996353
Q 000568 290 NKQLS-RKKFLLVLDDV 305 (1416)
Q Consensus 290 ~~~l~-~~~~LlVlDdv 305 (1416)
....+ ++.-|+|+|.+
T Consensus 125 ~~l~~~~~~~liViDSi 141 (263)
T d1u94a1 125 DALARSGAVDVIVVDSV 141 (263)
T ss_dssp HHHHHHTCCSEEEEECG
T ss_pred HHHHHCCCCCEEEEECC
T ss_conf 99985499989999886
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.86 E-value=0.0039 Score=33.11 Aligned_cols=85 Identities=19% Similarity=0.097 Sum_probs=57.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCC-----CCCCHHHHHHHH
Q ss_conf 993899998689880999999998042231456827999956875889999999997028778-----978788999999
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTI-----DDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 289 (1416)
+..++.-|+|++|.|||++|.+++..... .=..++|++.-..++.. +++.++.... ...+.++..+.+
T Consensus 55 p~g~itei~G~~~sGKT~l~l~~~~~aqk--~g~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~ 127 (268)
T d1xp8a1 55 PRGRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 127 (268)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCCCHH-----HHHHHCCCCHHEEEECCCCHHHHHHHH
T ss_conf 67547898058765227999999999970--79989999887658999-----999828981237997489999999999
Q ss_pred HHHHC-CCCEEEEECCCC
Q ss_conf 99852-664789963533
Q 000568 290 NKQLS-RKKFLLVLDDVW 306 (1416)
Q Consensus 290 ~~~l~-~~~~LlVlDdv~ 306 (1416)
..... ++.-|+|+|-+-
T Consensus 128 ~~l~~~~~~~liIiDSi~ 145 (268)
T d1xp8a1 128 ELLVRSGAIDVVVVDSVA 145 (268)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHHCCCCCEEEEECCC
T ss_conf 999865897199994545
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.0071 Score=31.36 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=46.7
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCC--CCEEEEEECCCCCHHHHHHHHHHHHC--CCCCCCCCHHHHHHH
Q ss_conf 99993899998689880999999998042231456--82799995687588999999999702--877897878899999
Q 000568 213 NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF--DLKAWTCVSNDFDVIRLTKTILRCIT--KQTIDDSDLNLLQEE 288 (1416)
Q Consensus 213 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~ 288 (1416)
....+-+|+|.|..|+||||+|+.+.... ...+ ..+.-++...-+-..+.... +.+. ....+.-|.+.+.+.
T Consensus 76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL--~~~~~~~~v~~Is~D~F~~~~~~l~~--~~~~~~~g~Pes~D~~~L~~~ 151 (308)
T d1sq5a_ 76 GQRIPYIISIAGSVAVGKSTTARVLQALL--SRWPEHRRVELITTDGFLHPNQVLKE--RGLMKKKGFPESYDMHRLVKF 151 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHHH--TTSTTCCCEEEEEGGGGBCCHHHHHH--HTCTTCTTSGGGBCHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHH--HHHCCCCCEEEEEEEEEECCCHHHHH--HCCCCCCCCHHHHHHHHHHHH
T ss_conf 78998899996899998768999999997--30468996599952156898458888--368766881676319999999
Q ss_pred HHHHHCCCC
Q ss_conf 999852664
Q 000568 289 LNKQLSRKK 297 (1416)
Q Consensus 289 l~~~l~~~~ 297 (1416)
+.....++.
T Consensus 152 L~~lk~g~~ 160 (308)
T d1sq5a_ 152 VSDLKSGVP 160 (308)
T ss_dssp HHHHTTTCS
T ss_pred HHHHHCCCC
T ss_conf 999975998
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.72 E-value=0.0023 Score=34.58 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 679999999832888899993899998689880999999998042
Q 000568 197 TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 197 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+.++.|.+..... ...+.-+|+|.|++|.||||+|+.+....
T Consensus 5 ~~~~~~~~~~~~~---~~~~~~iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 5 DRIDFLCKTILAI---KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp HHHHHHHHHHHTS---CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999999852---67998899978988789999999999983
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00019 Score=41.90 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=5.8
Q ss_pred CCCCCCEEEECCCCC
Q ss_conf 588521896225778
Q 000568 1153 NNTSLEVIDIGNCEN 1167 (1416)
Q Consensus 1153 ~l~~L~~L~Ls~n~~ 1167 (1416)
.+++|++|++++|.+
T Consensus 63 ~~~~L~~L~Ls~N~i 77 (162)
T d1koha1 63 NIPELLSLNLSNNRL 77 (162)
T ss_dssp HCTTCCCCCCCSSCC
T ss_pred HCCCCCEEECCCCCC
T ss_conf 487878863777666
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.57 E-value=0.004 Score=33.05 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=48.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCC-CCHHHHHHHHHHHHCCCCCC---CCCHHHHHH-H
Q ss_conf 999389999868988099999999804223145682799995687-58899999999970287789---787889999-9
Q 000568 214 DGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQTID---DSDLNLLQE-E 288 (1416)
Q Consensus 214 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~-~ 288 (1416)
+..+.|+.++|+.|+||||.+.+++...+.+ . ..+..++.... ....+.++...+.++..... ..+...... .
T Consensus 9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~-g-~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a 86 (211)
T d1j8yf2 9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKK-G-FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG 86 (211)
T ss_dssp SSSSEEEEEECSCCC----HHHHHHHHHHHT-T-CCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHH
T ss_conf 9999899998999999899999999999977-9-9369997202355156789874014684223024410244789999
Q ss_pred HHHHHCCCCEEEEECCC
Q ss_conf 99985266478996353
Q 000568 289 LNKQLSRKKFLLVLDDV 305 (1416)
Q Consensus 289 l~~~l~~~~~LlVlDdv 305 (1416)
+........=++++|=.
T Consensus 87 ~~~~~~~~~d~IlIDTa 103 (211)
T d1j8yf2 87 VEKFLSEKMEIIIVDTA 103 (211)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCCEEEEECC
T ss_conf 98740267736998537
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.45 E-value=0.0083 Score=30.91 Aligned_cols=89 Identities=16% Similarity=0.079 Sum_probs=50.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECC-CCCHHHHHHHHHHHHCCCCC---CCCCHHHHHHHHH
Q ss_conf 9938999986898809999999980422314568279999568-75889999999997028778---9787889999999
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN-DFDVIRLTKTILRCITKQTI---DDSDLNLLQEELN 290 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 290 (1416)
+..+++.++|+.|+||||.+.+++.....+ =..+..++... .....+.++...+.++.+.. ...+.........
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~--g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~ 81 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAV 81 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 997799998999998899999999999977--990799981366654026676405456823896167742788999989
Q ss_pred HHHC-CCCEEEEECCC
Q ss_conf 9852-66478996353
Q 000568 291 KQLS-RKKFLLVLDDV 305 (1416)
Q Consensus 291 ~~l~-~~~~LlVlDdv 305 (1416)
.... ...=++++|=.
T Consensus 82 ~~~~~~~~d~ilIDTa 97 (207)
T d1okkd2 82 QAMKARGYDLLFVDTA 97 (207)
T ss_dssp HHHHHHTCSEEEECCC
T ss_pred HHHHHCCCCEEECCCC
T ss_conf 9999879999971752
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.36 E-value=0.00046 Score=39.33 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=30.1
Q ss_pred EEEEEHHHHHHHHHHHH----CCCC----CCCCCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 03200467999999983----2888----89999389999868988099999999804
Q 000568 191 KVYGRETEKKEIVELLL----RDDL----RNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 191 ~~vGr~~~~~~l~~~L~----~~~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.++|.++.++.+...+. .... .....++.+.++||+|+|||.||+.+++.
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 1349199999999999989877245787766789866999899998888999998621
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.31 E-value=0.0014 Score=36.03 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.+.|.|.|++|+||||||+.+...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 328999899999899999999998
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.29 E-value=0.002 Score=35.10 Aligned_cols=38 Identities=13% Similarity=-0.054 Sum_probs=27.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEE
Q ss_conf 993899998689880999999998042231456827999
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWT 253 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 253 (1416)
....+|.++|++|+||||+|+.+...... .+++...++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~-~~~~~~~~~ 41 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLL 41 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCSSCEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCHHHH
T ss_conf 99769998899999999999999999865-079840321
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.27 E-value=0.013 Score=29.68 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=49.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC--HHHHHHHHHHHHCCCCC---CCCCHHHHHHHH
Q ss_conf 9938999986898809999999980422314568279999568758--89999999997028778---978788999999
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD--VIRLTKTILRCITKQTI---DDSDLNLLQEEL 289 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l 289 (1416)
.+.+|+.++|+.|+||||.+.+++.... ..-..+..+++ +.+. ..+.++...+.++.+.. +..+........
T Consensus 8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~--~~g~kV~lit~-Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~ 84 (207)
T d1ls1a2 8 KDRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 84 (207)
T ss_dssp CSSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEEC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9986899989999988999999999999--77992799954-43464088889999986288631112442036788889
Q ss_pred HHHH-CCCCEEEEECCCCC
Q ss_conf 9985-26647899635335
Q 000568 290 NKQL-SRKKFLLVLDDVWN 307 (1416)
Q Consensus 290 ~~~l-~~~~~LlVlDdv~~ 307 (1416)
.... ....=++++|=...
T Consensus 85 ~~~~~~~~~d~vlIDTaGr 103 (207)
T d1ls1a2 85 EEKARLEARDLILVDTAGR 103 (207)
T ss_dssp HHHHHHHTCCEEEEECCCC
T ss_pred HHHHHHCCCCCEEECCCCC
T ss_conf 8887633676403345442
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.27 E-value=0.0095 Score=30.55 Aligned_cols=90 Identities=19% Similarity=0.132 Sum_probs=50.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCC-CCHHHHHHHHHHHHCCCCC---CCCCHHHHHHHHH
Q ss_conf 99389999868988099999999804223145682799995687-5889999999997028778---9787889999999
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND-FDVIRLTKTILRCITKQTI---DDSDLNLLQEELN 290 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 290 (1416)
..+.|+.++|+.|+||||.+.+++.... .+-..+..+++... ....+.++...+.++.... +..+.........
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~--~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~ 86 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 86 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9998999989999988999999999999--77990699960133420467888776432764103677776899878878
Q ss_pred H-HHCCCCEEEEECCCC
Q ss_conf 9-852664789963533
Q 000568 291 K-QLSRKKFLLVLDDVW 306 (1416)
Q Consensus 291 ~-~l~~~~~LlVlDdv~ 306 (1416)
. ......=++++|=.-
T Consensus 87 ~~~~~~~~d~ilIDTaG 103 (213)
T d1vmaa2 87 AHALARNKDVVIIDTAG 103 (213)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHHCCCCEEEEECCC
T ss_conf 99987699989982455
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.20 E-value=0.0046 Score=32.64 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=31.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECC
Q ss_conf 9938999986898809999999980422314568279999568
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN 257 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 257 (1416)
+...++.|+|++|+|||++|.+++.. ...+...+.|++...
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~~--~~~~~~~~~~is~e~ 64 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVEN--ACANKERAILFAYEE 64 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEESSS
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH--HHHHCCCCCEEECCC
T ss_conf 69849999918999999999999999--987232441121267
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.002 Score=35.06 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99389999868988099999999804
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
....+|.++|++|+||||+|+.++..
T Consensus 17 ~~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 17 FRGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99969998899999999999999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.11 E-value=0.0038 Score=33.16 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 9999999832888899993899998689880999999998042231456827999956875
Q 000568 199 KKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDF 259 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 259 (1416)
...+.+.+... .+...+|+|.|++|+|||||..++....+..++=-.++-++.+..+
T Consensus 37 ~~~~~~~~~~~----~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~ 93 (323)
T d2qm8a1 37 VRDLIDAVLPQ----TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR 93 (323)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS
T ss_pred HHHHHHHHHHC----CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 99999986330----6981598611799888999999999987636875134434655478
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.08 E-value=0.018 Score=28.68 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99389999868988099999999804
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
+.+.+|.++|++|.||||+|+.+...
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.02 Score=28.41 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=51.5
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHCCC----
Q ss_conf 999998328888999938999986898809999999980422314568279999-568758899999999970287----
Q 000568 201 EIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTC-VSNDFDVIRLTKTILRCITKQ---- 275 (1416)
Q Consensus 201 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l~~~---- 275 (1416)
++++.+..-. ....++|.|..|+|||+|+..+.+... ..+-++++++. +.+... ...++.+.....
T Consensus 32 r~ID~l~Pig-----rGQr~~I~g~~g~GKT~l~~~i~~~~~-~~~~~~v~~~~~iger~~---ev~~~~~~~~~~vv~~ 102 (289)
T d1xpua3 32 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIA-YNHPDCVLMVLLIDERPE---EVTEMQRLVKGEVVAS 102 (289)
T ss_dssp HHHHHHSCCB-----TTCEEEEEECSSSSHHHHHHHHHHHHH-HHCTTSEEEEEEEEECHH---HHHHHHHHCSSEEEEE
T ss_pred EEEEECCCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEEEEECEEHH---HHHHHHHHCCEEEEEC
T ss_conf 3564125645-----787556867999887899999999775-158976999876110087---8876775405079960
Q ss_pred CCCCCCH-----HHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf 7897878-----89999999985--266478996353
Q 000568 276 TIDDSDL-----NLLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 276 ~~~~~~~-----~~~~~~l~~~l--~~~~~LlVlDdv 305 (1416)
..+.... ....-.+.+++ +++.+|+++||+
T Consensus 103 t~d~~~~~r~~~~~~a~~iAEyfrd~G~dVLli~Dsl 139 (289)
T d1xpua3 103 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 139 (289)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCH
T ss_conf 5888356789999999999999998265751551768
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.07 E-value=0.0028 Score=34.09 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=23.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9993899998689880999999998042
Q 000568 214 DGGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 214 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
...+.+|.|.|++|.||||+|+.++...
T Consensus 3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 3 KSKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8899489998999998899999999997
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.04 E-value=0.0019 Score=35.25 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=3.7
Q ss_pred CCCCEEEECCC
Q ss_conf 85218962257
Q 000568 1155 TSLEVIDIGNC 1165 (1416)
Q Consensus 1155 ~~L~~L~Ls~n 1165 (1416)
++|+.|++++|
T Consensus 44 ~~L~~L~Ls~n 54 (167)
T d1pgva_ 44 KHIEKFSLANT 54 (167)
T ss_dssp SCCCEEECTTS
T ss_pred CCCCEEECCCC
T ss_conf 76454012015
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.016 Score=28.97 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=40.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCC-C--CCEEEEEECCCC---CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 389999868988099999999804223145-6--827999956875---8899999999970287789787889999999
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDH-F--DLKAWTCVSNDF---DVIRLTKTILRCITKQTIDDSDLNLLQEELN 290 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f--~~~~wv~~s~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 290 (1416)
+-+|+|.|..|.||||+|+.+......... + ..+.-++...-+ ..............-......+.+.+...+.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLK 81 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98999989997879999999999964101345788439993465322440222035551455557827888777776666
Q ss_pred HHHCCCCE
Q ss_conf 98526647
Q 000568 291 KQLSRKKF 298 (1416)
Q Consensus 291 ~~l~~~~~ 298 (1416)
....++..
T Consensus 82 ~~~~~~~~ 89 (213)
T d1uj2a_ 82 EITEGKTV 89 (213)
T ss_dssp HHHTTCCE
T ss_pred HHHCCCCC
T ss_conf 65328863
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.03 E-value=0.0024 Score=34.49 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
++|.|.|++|+||||+|+.+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 08999899999989999999998
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0024 Score=34.49 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.+|++|+|..|+|||||++++...
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 788999918999899999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.93 E-value=0.024 Score=27.88 Aligned_cols=70 Identities=17% Similarity=0.326 Sum_probs=38.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 89999868988099999999804223145682799995687588999999999702877897878899999999852664
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQTIDDSDLNLLQEELNKQLSRKK 297 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 297 (1416)
.++.++|++|+|||.+|+.++.. ....+. .+-+..++-.+ .. .-+.+..++.+.+... +.
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~--~~~~~~-~~~~~~~~~~~---------------~~-~G~~e~~~~~~f~~a~-~~ 183 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEA--LGGKDK-YATVRFGEPLS---------------GY-NTDFNVFVDDIARAML-QH 183 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHH--HHTTSC-CEEEEBSCSST---------------TC-BCCHHHHHHHHHHHHH-HC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HCCCCC-EEEEEHHHHHH---------------CC-CCHHHHHHHHHHHHHH-HC
T ss_conf 63888779985088999999998--637998-08978268544---------------24-4457899999999986-26
Q ss_pred EEEEECCCCC
Q ss_conf 7899635335
Q 000568 298 FLLVLDDVWN 307 (1416)
Q Consensus 298 ~LlVlDdv~~ 307 (1416)
.+|++|.++.
T Consensus 184 ~ilf~DEid~ 193 (321)
T d1w44a_ 184 RVIVIDSLKN 193 (321)
T ss_dssp SEEEEECCTT
T ss_pred CEEEEEHHHH
T ss_conf 5897410122
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0024 Score=34.48 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998689880999999998042
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+.|.|+|++|+|||||+++++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998899971999999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.002 Score=35.08 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
+.|.+.|++|+||||+|+.++..
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 74999899999999999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.87 E-value=0.0032 Score=33.73 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.+|.|.|++|+||||+|+.+...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0055 Score=32.10 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=36.5
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 99999998328888999938999986898809999999980422314568279999568758899999
Q 000568 199 KKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTK 266 (1416)
Q Consensus 199 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 266 (1416)
..++...+.. ..+...+|+|+|++|+|||||...+.......++=-+++-++.+..++--.++.
T Consensus 40 ~~~ll~~~~~----~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailg 103 (327)
T d2p67a1 40 STQLLDAIMP----YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG 103 (327)
T ss_dssp HHHHHHHHGG----GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------
T ss_pred HHHHHHHHHH----CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCC
T ss_conf 9999998653----169832897438999989999999999997569833220377761000651554
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.032 Score=26.98 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
...++|+|+.|.|||||++.+..-
T Consensus 29 Ge~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 29 GEVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 999999999999899999999735
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.0043 Score=32.82 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 993899998689880999999998042
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+..++|.|.|++|+||||+|+.++...
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.75 E-value=0.034 Score=26.84 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+++|.|+.|.|||||.+.+..-
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCCCHHHHHCCCC
T ss_conf 979999889999821655750688
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.69 E-value=0.0042 Score=32.91 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+.+|.++|.+|+||||+|++++...
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9899998999999999999999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.036 Score=26.64 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCEEEEEECCCCCHHHHHHHHHHHH--
Q ss_conf 4679999999832888899993899998689880999999998042-2314568279999568758899999999970--
Q 000568 196 ETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH-RVQDHFDLKAWTCVSNDFDVIRLTKTILRCI-- 272 (1416)
Q Consensus 196 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-- 272 (1416)
+..+..+...+. .++..|.|++|.||||++..+.... +....-...+.+..........+...+....
T Consensus 151 ~~Q~~A~~~al~---------~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~ 221 (359)
T d1w36d1 151 NWQKVAAAVALT---------RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ 221 (359)
T ss_dssp CHHHHHHHHHHT---------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHC---------CCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 389999999970---------88599976898875216999999999987526982898437599999999888777764
Q ss_pred -CCCC-------CCCCCHHHH------HHHHHHHH-C-CCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCH
Q ss_conf -2877-------897878899------99999985-2-664789963533548133864114444599994899981436
Q 000568 273 -TKQT-------IDDSDLNLL------QEELNKQL-S-RKKFLLVLDDVWNENYNDWVDMSRPLEAGAPGSKIIVTTRNQ 336 (1416)
Q Consensus 273 -~~~~-------~~~~~~~~~------~~~l~~~l-~-~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~ 336 (1416)
.... .+......+ ...+...- . -+--++|+|.+...+......+...++ .++++|+.=-..
T Consensus 222 ~~~~~~~~~~~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~~~l~~~ll~~~~---~~~~lILvGD~~ 298 (359)
T d1w36d1 222 LPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP---DHARVIFLGDRD 298 (359)
T ss_dssp SSCCSCCCCSCSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCC---TTCEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHHHHHHC---CCCEEEEECCHH
T ss_conf 58104455420134557899876310006777754366654134653321448999999998725---999899977722
Q ss_pred HH
Q ss_conf 78
Q 000568 337 EV 338 (1416)
Q Consensus 337 ~v 338 (1416)
+.
T Consensus 299 QL 300 (359)
T d1w36d1 299 QL 300 (359)
T ss_dssp SG
T ss_pred HC
T ss_conf 16
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.64 E-value=0.023 Score=28.00 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 38999986898809999999980
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
...++|+|+.|.|||||++.+..
T Consensus 44 Ge~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 44 GETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999988999809999999971
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.63 E-value=0.038 Score=26.53 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=56.7
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC-HHHHHHHHHHHHCCC----
Q ss_conf 999998328888999938999986898809999999980422314568279999568758-899999999970287----
Q 000568 201 EIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFD-VIRLTKTILRCITKQ---- 275 (1416)
Q Consensus 201 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~---- 275 (1416)
+.++.+..-. ....++|.|..|+|||+|+..+.... .+.+-+..+++-+++... ..++.+++.+.-...
T Consensus 57 raID~l~pig-----kGQr~~If~~~g~GKt~l~~~i~~~~-~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~ 130 (276)
T d2jdid3 57 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 130 (276)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHH-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEEEECCCC-----CCCEEEEECCCCCCHHHHHHHHHHHH-HHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 2031025636-----78877766799989899999999988-76179969999955575999999999886176545666
Q ss_pred ---------CCCCCCHH-----HHHHHHHHHHC---CCCEEEEECCC
Q ss_conf ---------78978788-----99999999852---66478996353
Q 000568 276 ---------TIDDSDLN-----LLQEELNKQLS---RKKFLLVLDDV 305 (1416)
Q Consensus 276 ---------~~~~~~~~-----~~~~~l~~~l~---~~~~LlVlDdv 305 (1416)
..+..... ...-.+.+++. ++..|+++||+
T Consensus 131 ~~~tvvv~~~s~~~~~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsl 177 (276)
T d2jdid3 131 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 177 (276)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 42389999789999999999999999999998863798489997060
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.038 Score=26.53 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=46.1
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHC-------CCCCCCCCHHH
Q ss_conf 99993899998689880999999998042231456-82799995687588999999999702-------87789787889
Q 000568 213 NDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHF-DLKAWTCVSNDFDVIRLTKTILRCIT-------KQTIDDSDLNL 284 (1416)
Q Consensus 213 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~-------~~~~~~~~~~~ 284 (1416)
+...+-+|+|.|..|+||||||..+......+... ..++.++..+-+-..+-...+.+... ...++..|.+.
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~~l 102 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 102 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCHHHHH
T ss_conf 89998899837998788999999999999987277860676356777788899999852135553110047874034889
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998526
Q 000568 285 LQEELNKQLSR 295 (1416)
Q Consensus 285 ~~~~l~~~l~~ 295 (1416)
+.+.+.....+
T Consensus 103 l~~~l~~l~~~ 113 (286)
T d1odfa_ 103 LQEVLNTIFNN 113 (286)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHHH
T ss_conf 99999999740
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.62 E-value=0.0053 Score=32.22 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9389999868988099999999804
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
+.++|.|.|++|+||||+|+.+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9859999889999889999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.62 E-value=0.0037 Score=33.27 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 97989899999989999999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.61 E-value=0.029 Score=27.28 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+++|+|+.|.|||||++.+..-
T Consensus 41 Ge~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 41 GKTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999999999998599999998621
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.59 E-value=0.0052 Score=32.31 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99389999868988099999999804
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
+..-.|.|.|++|+||||+|+.++..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 99888999828999889999999998
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0063 Score=31.71 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=22.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99389999868988099999999804
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
...+++.|.|++|+||||+|+.+...
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98718999899998989999999998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=95.49 E-value=0.042 Score=26.21 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+++|.|+.|.|||||++.++.-
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl 52 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999998099999999648
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=95.46 E-value=0.043 Score=26.14 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
...++|+|+.|.|||||++.+..-
T Consensus 28 Ge~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999799999999996
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.46 E-value=0.0051 Score=32.35 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.++|.|.|++|+||||+|+.++..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 859999899999989999999997
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.40 E-value=0.045 Score=26.01 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+++|.|+.|.|||||.+.+..-
T Consensus 31 Ge~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 31 GERFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999989998099999999758
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.40 E-value=0.037 Score=26.63 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
..+++|+|+.|.|||||++.+..-.
T Consensus 62 Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 62 GEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999899982999999995797
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.37 E-value=0.03 Score=27.17 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.+++|.|+.|.|||||.+.+..-
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 79999979998099999999739
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.36 E-value=0.0052 Score=32.29 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998689880999999998042
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
++|.|.|++|+||||+++.+....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889998999989899999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0053 Score=32.22 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=29.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 38999986898809999999980422314568279999568758899999999970
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCI 272 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 272 (1416)
.+||.|.||+|+||+|+|+.+.+... ..++ +.-.++++++...
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~~~g-------l~~i------StGdLlR~~a~~~ 45 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAEALQ-------WHLL------DSGAIYRVLALAA 45 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT-------CEEE------EHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-------CCEE------CHHHHHHHHHHHH
T ss_conf 98899779998898999999999969-------9089------8889999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0074 Score=31.25 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+.+|.|.|++|+||||.|+.++...
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9399997999999899999999986
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.24 E-value=0.051 Score=25.67 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+++|.|+.|.|||||.+.+..-
T Consensus 32 Ge~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 32 GEFLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999998299999999758
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.23 E-value=0.0051 Score=32.34 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=33.1
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6770320046799999998328888999938999986898809999999980
Q 000568 188 NEAKVYGRETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 188 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
+-.+++|.+..+..+.-..... +..-+.+.|++|+|||++|+.+..
T Consensus 5 ~f~~I~Gq~~~kral~laa~~~------~~h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 5 PFSAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred CHHHCCCCHHHHHHHHHHHHCC------CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8514069499999999997646------997089988998529999999987
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.21 E-value=0.0052 Score=32.27 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=19.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
++++ +.|++|+||||+|+.++...
T Consensus 2 p~Iv-liG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 2 PKAV-LVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp CSEE-EECSTTSSHHHHHHHHHHHH
T ss_pred CCEE-EECCCCCCHHHHHHHHHHHH
T ss_conf 9489-98899998899999999984
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=95.21 E-value=0.052 Score=25.61 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
..+++|+|+-|.|||||.+.+..-.
T Consensus 28 Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 28 GEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799999999999999999996698
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.012 Score=29.77 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 799999998328888999938999986898809999999980
Q 000568 198 EKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 198 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
++..+.+.+.. ++.++|.+.|-||+||||+|-.+..
T Consensus 7 ~~~~~~~~~~~------~~~~iii~sGKGGVGKTT~a~nLA~ 42 (279)
T d1ihua2 7 SLSALVDDIAR------NEHGLIMLMGKGGVGKTTMAAAIAV 42 (279)
T ss_dssp CHHHHHHHHHT------TSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHC------CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 58899988503------7978999979998878999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.11 E-value=0.01 Score=30.37 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9389999868988099999999804
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
...+|.+.|++|.||||+|+.+...
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9869999899999989999999988
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.017 Score=28.81 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9938999986898809999999980
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
..++++.+.|-||+||||+|..++.
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~lA~ 30 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCATAI 30 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 8985999979986749999999999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.056 Score=25.37 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+++|.|+.|.|||||.+.+..-
T Consensus 26 Gei~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 26 GEFVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999989998299999999658
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=0.056 Score=25.37 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=32.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC----CCCEEEEEECCCCCHH
Q ss_conf 99389999868988099999999804223145----6827999956875889
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH----FDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~ 262 (1416)
+..+++.|.|++|+|||++|.++......... -...+|+.....++..
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 83 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV 83 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHH
T ss_conf 6996999983899988999999999863124312689639999402307899
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.92 E-value=0.0082 Score=30.95 Aligned_cols=22 Identities=45% Similarity=0.608 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998689880999999998042
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 220 i~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
|.+.|++|+||||+|+.++...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.83 E-value=0.017 Score=28.86 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998689880999999998042
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+++.|.|++|+||||+++.+....
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998989989899999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.80 E-value=0.0093 Score=30.61 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=29.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 8999986898809999999980422314568279999568758899999999970287
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITKQ 275 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 275 (1416)
-+|+|-|++|+||||+|+.++.... ..++ +.-.+++.++......
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg-------~~~i------stGdl~R~~a~~~~~~ 48 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG-------FTYL------DTGAMYRAATYMALKN 48 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC-------CEEE------EHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC-------CCEE------CHHHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969-------9478------7799999999999870
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.79 E-value=0.0077 Score=31.15 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986898809999999980422
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHR 242 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~~ 242 (1416)
++++|+|..|+|||||+.++....+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 0999980999989999999999998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=94.78 E-value=0.0094 Score=30.58 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.|+|+.|+|||||++.+....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l 24 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHCC
T ss_conf 89999899938999999998148
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=94.77 E-value=0.068 Score=24.83 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
..+++|.|+.|.|||||++.+.--.
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 31 GQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp SCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9799998999898889999875886
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=94.75 E-value=0.061 Score=25.13 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=46.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCH-HHHHHHHHHHHCCC-------CCCC-----CCHH
Q ss_conf 389999868988099999999804223145682799995687588-99999999970287-------7897-----8788
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDV-IRLTKTILRCITKQ-------TIDD-----SDLN 283 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i~~~l~~~-------~~~~-----~~~~ 283 (1416)
...++|.|..|+|||+|+....... ..+.+..+++-+...... .++..++.+.-... ..+. .-..
T Consensus 67 GQr~~Ifg~~g~GKt~l~~~~~~~~--~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~ 144 (276)
T d1fx0a3 67 GQRELIIGDRQTGKTAVATDTILNQ--QGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 144 (276)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC--CTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHH--CCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 7667600677888579999977654--04675355555221267788999851157750331001234676599999999
Q ss_pred HHHHHHHHHH--CCCCEEEEECCC
Q ss_conf 9999999985--266478996353
Q 000568 284 LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 284 ~~~~~l~~~l--~~~~~LlVlDdv 305 (1416)
...-.+.+++ ++++.|+++||+
T Consensus 145 ~~a~tiAEyfrd~G~~Vlll~Dsl 168 (276)
T d1fx0a3 145 YTGAALAEYFMYRERHTLIIYDDL 168 (276)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 999988889997599645775053
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.74 E-value=0.0097 Score=30.46 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
.|.+.|++|+||||+|+.++...
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=94.74 E-value=0.011 Score=30.14 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=25.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 899998689880999999998042231456827999956
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVS 256 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 256 (1416)
+.|+|+|-||+||||+|-.+....... .+. +.-++..
T Consensus 2 r~Iai~gKGGvGKTT~a~nLA~~LA~~-G~r-VllID~D 38 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM-GKT-IMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT-TCC-EEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CCC-EEEEECC
T ss_conf 799998998577999999999999968-995-8999637
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.71 E-value=0.024 Score=27.90 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.+-|.++||.|+|||-||+.++..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 564799899998899999999987
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.69 E-value=0.071 Score=24.73 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=33.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCC----CCCCCEEEEEECCCCCHHHH
Q ss_conf 993899998689880999999998042231----45682799995687588999
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ----DHFDLKAWTCVSNDFDVIRL 264 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~ 264 (1416)
+..+++.|+|++|+|||++|.++....... ......+|+......+....
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI 87 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCHHHHHHH
T ss_conf 588799998589898899999999986344876388962899831012589999
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.54 E-value=0.014 Score=29.45 Aligned_cols=27 Identities=26% Similarity=0.032 Sum_probs=23.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 993899998689880999999998042
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+..+.+.++|++|+|||++|+.+++..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 976769998999988899999999985
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.43 E-value=0.017 Score=28.91 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9389999868988099999999804
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
+.+++ |.|++|+||||+|+.++..
T Consensus 3 ~~rii-l~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 3 GVRAV-LLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCEEE-EECCTTSSHHHHHHHHHHH
T ss_pred CCEEE-EECCCCCCHHHHHHHHHHH
T ss_conf 63899-9899999889999999998
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.39 E-value=0.013 Score=29.63 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.++|.|.|++|.||||+|+.++..
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 828999899999879999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.36 E-value=0.013 Score=29.54 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=41.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCC--CCHHHHHHHHHH--HHCCC-----CCCCCCHHHHH
Q ss_conf 9389999868988099999999804223145682799995687--588999999999--70287-----78978788999
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSND--FDVIRLTKTILR--CITKQ-----TIDDSDLNLLQ 286 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~--~l~~~-----~~~~~~~~~~~ 286 (1416)
+..+|+|.|..|.||||+|+.+.+..... .. ..+.++...- ++....-..+.. ..... ..++.+.+.+.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~-~v-~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL~ 80 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQIFRRE-GV-KAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELE 80 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH-TC-CEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 88899998999780999999999997156-99-76999477787565022011133333540467798984426599999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999852664
Q 000568 287 EELNKQLSRKK 297 (1416)
Q Consensus 287 ~~l~~~l~~~~ 297 (1416)
..++...+++.
T Consensus 81 ~~l~~L~~g~~ 91 (288)
T d1a7ja_ 81 RVFREYGETGQ 91 (288)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHCCCC
T ss_conf 99999987996
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.32 E-value=0.012 Score=29.91 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+..|.|.|++|.||||+|+.++...
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7299998899999899999999987
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=94.01 E-value=0.02 Score=28.34 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=24.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 899998689880999999998042231456827999956
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVS 256 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 256 (1416)
+.|+|.|-||+||||+|-.+....... .+ .+.-|...
T Consensus 3 r~IaisgKGGVGKTT~a~NLA~~LA~~-G~-rVLlID~D 39 (289)
T d2afhe1 3 RQCAIYGKGGIGKSTTTQNLVAALAEM-GK-KVMIVGCD 39 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT-TC-CEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEECC
T ss_conf 289998999877999999999999978-99-78999518
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.01 E-value=0.02 Score=28.33 Aligned_cols=27 Identities=26% Similarity=0.073 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 999389999868988099999999804
Q 000568 214 DGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 214 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
...+-+|+|.|..|+||||+++.+...
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 998619998899998889999999987
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.98 E-value=0.025 Score=27.72 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998689880999999998042
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-.|.|.|++|+||||+|+.++...
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 169998899998799999999997
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.96 E-value=0.023 Score=27.96 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 938999986898809999999980
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
.+-+|+|+|+.|.||||+|+.+..
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989887789999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.93 E-value=0.019 Score=28.57 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.024 Score=27.87 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 93899998689880999999998042
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+++.|+|-|+-|+||||+++.+....
T Consensus 1 ~pk~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98199998998885999999999987
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=93.82 E-value=0.11 Score=23.53 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
..+++|.|+.|.|||||.+.+..-.
T Consensus 32 Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799999999985999999996788
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.70 E-value=0.022 Score=28.15 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.67 E-value=0.025 Score=27.76 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
.|.|.|++|.||||+|+.++...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.11 Score=23.35 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+++|+|+.|.|||||++.+..-
T Consensus 40 Ge~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 40 GEVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999999998499999998614
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.60 E-value=0.018 Score=28.69 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
+-|.|+|+.|+|||||++.+...
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 76999899999989999999974
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=93.60 E-value=0.012 Score=29.87 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCCHH-----HHHHHHCCCCCCCEEEECCCCCCCC----CCCCCCCCCCCCEEEECCCCC----CCCCCC
Q ss_conf 995189980698422-----6687412588521896225778533----466455788766065024898----643668
Q 000568 1131 QSLKFLDVWECPKLE-----SIAERLNNNTSLEVIDIGNCENLKI----LPSGLHNLCQLQRISIWCCGN----LVSFSE 1197 (1416)
Q Consensus 1131 ~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~~~~----l~~~~~ 1197 (1416)
++|++|+++++.... .+...+...++|+.|++++|.+... +...+...++++.+++++|.. ...+..
T Consensus 17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~ 96 (166)
T d1io0a_ 17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 96 (166)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHH
T ss_conf 99868876899998989999999888419825743015896117789999987752122101210254322014788999
Q ss_pred CCCCCCCCCEEEECCCCCC------CCCCCCCCCCCCCCEEEEECCC
Q ss_conf 9989999356987366687------7675235676755615550678
Q 000568 1198 GGLPCAKLTRLEISECERL------EALPRGLRNLTCLQHLTIGDVL 1238 (1416)
Q Consensus 1198 ~~~~l~~L~~L~l~~~~~~------~~~~~~l~~l~~L~~L~l~~n~ 1238 (1416)
.....++|+.++++.+... ..+...+...++|+.|+++.+.
T Consensus 97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 99848652477321677867679999999999849984788581898
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.58 E-value=0.018 Score=28.64 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.|.|.|+.|+||||+++++...
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 1999999999999999999974
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.53 E-value=0.036 Score=26.67 Aligned_cols=24 Identities=42% Similarity=0.434 Sum_probs=20.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
...+...|+.|+|||.+|+.++..
T Consensus 68 ~~niLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 68 KSNILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 753244189986378999999864
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.51 E-value=0.026 Score=27.64 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
+++.|+|+.|+||||+++.+...
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 49999899999999999999845
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.14 Score=22.74 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=33.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC----CCCCCCCEEEEEECCCCCHH
Q ss_conf 9938999986898809999999980422----31456827999956875889
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYNDHR----VQDHFDLKAWTCVSNDFDVI 262 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~~s~~~~~~ 262 (1416)
+..+++.|+|++|.|||++|.+++.... ....+..+.|+.....+...
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD 86 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHH
T ss_conf 6897999988998878899999999997444316666248874017777899
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.03 E-value=0.035 Score=26.77 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
|+.|.|+.|.|||||...+.+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918998399999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.03 E-value=0.036 Score=26.69 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.++ .|.|++|+||||+|+.++..
T Consensus 3 mrI-vl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 3 IRM-VLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CEE-EEECCTTSSHHHHHHHHHHH
T ss_pred EEE-EEECCCCCCHHHHHHHHHHH
T ss_conf 699-99899999989999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.036 Score=26.65 Aligned_cols=23 Identities=13% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
+.|.|+|+.|+|||||++++...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 71999998999999999999970
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.16 Score=22.40 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
...|+|.|+.|+||||+++.+.+..
T Consensus 3 G~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 0599998998889999999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.035 Score=26.78 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
.|.|.|++|.||||.|+.++...
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.49 E-value=0.047 Score=25.88 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.++.|+||.|+|||||.+.+...
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 09999999999999999999863
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.37 E-value=0.08 Score=24.35 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=26.4
Q ss_pred EEEEEE-CCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 899998-689880999999998042231456827999956
Q 000568 218 SVIPII-GMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVS 256 (1416)
Q Consensus 218 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 256 (1416)
++|+|. |-||+||||+|..++.... ..-..+..+...
T Consensus 2 kvIav~s~KGGvGKTtia~nlA~~la--~~g~~VlliD~D 39 (232)
T d1hyqa_ 2 RTITVASGKGGTGKTTITANLGVALA--QLGHDVTIVDAD 39 (232)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH--HCCCCEEEEECC
T ss_conf 79999799999809999999999999--689989999598
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=92.23 E-value=0.18 Score=22.01 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+++|.|+.|.|||||.+.+..-
T Consensus 26 Ge~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 26 GEYFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999989998299999999647
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.21 E-value=0.18 Score=21.99 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 93899998689880999999998042
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
...++.|.|.+|+|||++|.+++...
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 88599999179999899999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.034 Score=26.82 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.+.|+|-|+.|+||||+|+.+...
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 988999878887799999999999
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.97 E-value=0.19 Score=21.81 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=49.0
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC-C----CCC-CEEEEEECCCCCH-HHHHHHHHHHHC
Q ss_conf 99999832888899993899998689880999999998042231-4----568-2799995687588-999999999702
Q 000568 201 EIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDHRVQ-D----HFD-LKAWTCVSNDFDV-IRLTKTILRCIT 273 (1416)
Q Consensus 201 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~----~f~-~~~wv~~s~~~~~-~~~~~~i~~~l~ 273 (1416)
+.++.+..-. ....++|.|.+|+|||+++..+....... . .-. .++++-+++..+. .++...+...-.
T Consensus 57 raID~l~pig-----~GQr~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~ 131 (285)
T d2jdia3 57 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 131 (285)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 5774346766-----78778765688888589999999757764156544563289996307638789999998614561
Q ss_pred CC-------CCCCCCHH-----HHHHHHHHHH--CCCCEEEEECCC
Q ss_conf 87-------78978788-----9999999985--266478996353
Q 000568 274 KQ-------TIDDSDLN-----LLQEELNKQL--SRKKFLLVLDDV 305 (1416)
Q Consensus 274 ~~-------~~~~~~~~-----~~~~~l~~~l--~~~~~LlVlDdv 305 (1416)
.. ..+..... ...-.+.+++ +++..|+++||+
T Consensus 132 ~~~tvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~G~~VLll~Dsl 177 (285)
T d2jdia3 132 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 177 (285)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 2004999978999999999999999999999997699679997172
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=91.62 E-value=0.065 Score=24.98 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+++|+|+.|.|||||++.+..-
T Consensus 28 GEi~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 28 GDVISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 979999989998299999999747
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.55 E-value=0.083 Score=24.26 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
.|+|-|..|+||||+++.+....
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.53 E-value=0.068 Score=24.83 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 899998689880999999998
Q 000568 218 SVIPIIGMGGLGKTTLAQLVY 238 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~ 238 (1416)
-+|+|+|+.|.||||+|+.+.
T Consensus 4 ~iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799978988688999999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.47 E-value=0.15 Score=22.53 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9389999868988099999999804223
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRV 243 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 243 (1416)
...+|.+.|.=|.||||+++.++....+
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9829999668776588999998764223
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=91.45 E-value=0.22 Score=21.45 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.+..|+|.+|+|||++|..++..
T Consensus 30 ~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 30 TVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 58999928999899999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.22 Score=21.44 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=29.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCC----CCCEEEEEECCCCCH
Q ss_conf 9389999868988099999999804223145----682799995687588
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDH----FDLKAWTCVSNDFDV 261 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~ 261 (1416)
...++.|.|++|+|||++|.+++........ +....++........
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP 71 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHH
T ss_conf 99799999589999999999999999886244665520100355665589
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.064 Score=24.99 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 93899998689880999999998042
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
....|+|-|+-|+||||+++.+....
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 76899998998886999999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.21 E-value=0.23 Score=21.29 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=29.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 8999986898809999999980422314568279999568758899999999
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTIL 269 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 269 (1416)
+.|+|-|+.|+||||+++.+...... ..+..+.+..-.......+.+++..
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~~L~~-~g~~~~~~~~ep~~~~~g~~i~~~~ 53 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLL 53 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 78999899888799999999999996-7997399832989961144558988
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.10 E-value=0.24 Score=21.22 Aligned_cols=55 Identities=13% Similarity=0.075 Sum_probs=34.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3899998689880999999998042231456827999956875889999999997028
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSNDFDVIRLTKTILRCITK 274 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 274 (1416)
..++.|.|.+|+|||+++..++.+.-....+ .+.+++. ..+...+...++.....
T Consensus 35 G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-~v~~~s~--E~~~~~~~~r~~~~~~~ 89 (277)
T d1cr2a_ 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-KVGLAML--EESVEETAEDLIGLHNR 89 (277)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEES--SSCHHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CEEEEEE--CCCHHHHHHHHHHHHHC
T ss_conf 8089999479997999999999726553366-3457640--11113577699998645
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.93 E-value=0.086 Score=24.15 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999986898809999999980
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
-+|+|+|..|.||||+|+.+..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999888887889999999998
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=90.62 E-value=0.11 Score=23.51 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=22.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 999389999868988099999999804
Q 000568 214 DGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 214 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
++..+.|+|+|.+|+|||||...+...
T Consensus 20 ~~~~~~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 20 EGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 889989999899998799999985298
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.42 E-value=0.06 Score=25.18 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+++|+|+.|.|||||.+.++.-
T Consensus 27 Gei~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 27 GNVVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999997199999999662
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.39 E-value=0.22 Score=21.38 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+-.|.|-|.-|+||||+++.+.+..
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~~l 30 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMASAA 30 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5899998886678999999999986
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.28 E-value=0.12 Score=23.17 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.+|+|+|..|.||||+|+.+...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.12 Score=23.28 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.|+|.+|+|||+|+..+.++.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.79 E-value=0.11 Score=23.52 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998689880999999998042
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 220 i~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
|.|+|.+|+|||||.+.+..+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996598
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.14 Score=22.73 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.|+|.+|+|||+|++.+.++
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.67 E-value=0.15 Score=22.52 Aligned_cols=38 Identities=26% Similarity=0.177 Sum_probs=26.1
Q ss_pred CEEEEEE-CCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 3899998-689880999999998042231456827999956
Q 000568 217 FSVIPII-GMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVS 256 (1416)
Q Consensus 217 ~~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 256 (1416)
.++|+|+ +-||+||||+|..++.... ..-..+.-++..
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la--~~g~~VlliD~D 40 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALG--DRGRKVLAVDGD 40 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHH--HCCCCEEEEECC
T ss_conf 829999899998819999999999999--689989999498
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.65 E-value=0.15 Score=22.60 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999868988099999999804
Q 000568 220 IPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 220 i~I~G~~GiGKTtLa~~v~~~ 240 (1416)
|.++|.+|+|||||+..+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.58 E-value=0.11 Score=23.39 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9389999868988099999999804
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..+|..|.|.-|.|||||.+++...
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9788998648889999999999856
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.29 E-value=0.14 Score=22.76 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.|+|.+|+|||||.+.+..+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.27 E-value=0.14 Score=22.72 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.|+|.+|+|||||+..+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.23 E-value=0.17 Score=22.18 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.++|.+|+|||||...+..+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989979899999997099
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.18 E-value=0.14 Score=22.71 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||+|...+..+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.89 E-value=0.18 Score=22.06 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998689880999999998042
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 220 i~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
|.++|.+|+|||+|.+.+..+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989978999999997398
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.83 E-value=0.18 Score=22.02 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.++|.+|+|||+|...+..+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.69 E-value=0.19 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.|+|.+|+|||+|.+.+.++.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~~ 28 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVEDS 28 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989949999999997398
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.69 E-value=0.15 Score=22.49 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
..+++|.|+.|.|||||++.+.--.
T Consensus 30 Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 30 GDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799999999984999999997797
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.65 E-value=0.16 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.|+|.+|+|||+|...+...
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.62 E-value=0.16 Score=22.33 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||||...+..+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=0.21 Score=21.62 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3899998689880999999998042
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
..-|.|+|.+|+|||+|...+.+..
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~ 28 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQ 28 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 3389999989929899999997198
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=0.19 Score=21.83 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||+|+..+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=0.3 Score=20.49 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.++|.+|+|||+|...+....
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999989989999999997098
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.54 E-value=0.18 Score=22.08 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.|+|.+|+|||||...+....
T Consensus 8 KivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999996198
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.43 E-value=0.2 Score=21.75 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||||...+..+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.17 Score=22.15 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||+|++.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999898993999999998188
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.34 E-value=0.18 Score=21.95 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-+.++|.+|+|||+|.+.+...
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.21 E-value=0.36 Score=19.97 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 679999999832888899993899998689880999999998042
Q 000568 197 TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 197 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
..++.+.+++.. +...++|..|+|||||...+..+.
T Consensus 84 ~g~~~L~~~l~~---------kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 84 MGIEELKEYLKG---------KISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp TTHHHHHHHHSS---------SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHHHHCC---------CEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 557669999569---------808997889877888877305355
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=0.19 Score=21.83 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998689880999999998042
Q 000568 220 IPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 220 i~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
|.++|.+|+|||+|...+.++.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989909899999998499
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=88.14 E-value=0.17 Score=22.20 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.|+|.+|+|||||...+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998999999998089
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.06 E-value=0.17 Score=22.21 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998689880999999998042
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
--|.|+|.+|+|||+|...+....
T Consensus 7 ~Kv~lvG~~~vGKTsLi~r~~~~~ 30 (173)
T d2fn4a1 7 HKLVVVGGGGVGKSALTIQFIQSY 30 (173)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999979969899999997399
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.93 E-value=0.25 Score=21.07 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-+.|+|.+|+|||+|+.++...
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992999999999719
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.92 E-value=0.2 Score=21.67 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||+|+..+..+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.85 E-value=0.19 Score=21.82 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.++|.+|+|||+|...+....
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.85 E-value=0.2 Score=21.75 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
+.|.|+|.+|+|||||...+...
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999998899999999679
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=87.83 E-value=0.26 Score=20.96 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
...|+|+|.+|+|||||...+...
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 769999999999999999999688
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.81 E-value=0.29 Score=20.60 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998689880999999998042
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
--+.|+|.+|+|||+|...+..+.
T Consensus 6 iKivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 999999999979999999997498
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.79 E-value=0.21 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.++|.+|+|||+|...+..+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~ 29 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSY 29 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999999979999999997399
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.72 E-value=0.21 Score=21.52 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9389999868988099999999804
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
....|.++|.+|+|||||...+...
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 7778999999998989999999678
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.70 E-value=0.2 Score=21.65 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998689880999999998042
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
+-|.|+|.+|+|||||...+....
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 989999999989899999998099
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.61 E-value=0.2 Score=21.64 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-+.|+|..|+|||||+..+..+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.53 E-value=0.3 Score=20.55 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=24.1
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99999983288889999389999868988099999999804
Q 000568 200 KEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 200 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.++..++.. .. ..|.|+|.+|+|||||...+...
T Consensus 5 ~~~~~~~~~------k~-~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 5 TRIWRLFNH------QE-HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp HHHHHHHTT------SC-EEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHHHCC------CE-EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 999977289------85-79999999998989999999668
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.47 E-value=0.25 Score=21.07 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998689880999999998042
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
--|.++|.+|+|||+|.+.+..+.
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~ 28 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 699999989958899999997299
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.34 E-value=0.26 Score=21.00 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-+.++|..|+|||+|...+....
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997299
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.33 E-value=0.24 Score=21.16 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998689880999999998042
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
.-|.|+|.+|+|||+|...+....
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989938899999997199
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.29 E-value=0.2 Score=21.73 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||+|.+++..+
T Consensus 4 KivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998889999988408
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.28 E-value=0.17 Score=22.12 Aligned_cols=41 Identities=12% Similarity=0.098 Sum_probs=26.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECC
Q ss_conf 938999986898809999999980422314568279999568
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDHRVQDHFDLKAWTCVSN 257 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 257 (1416)
...++.|.|.+|+|||++|.+++..... ..-..+.|++...
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~-~~~~~~~~~s~e~ 65 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYNGII-EFDEPGVFVTFEE 65 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSS
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCCCCCCC
T ss_conf 9839999947999999999999999998-5688742012667
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.24 E-value=0.23 Score=21.25 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.|+|.+|+|||+|.+.+.++.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~~ 33 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYANDA 33 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999989999999996499
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.20 E-value=0.18 Score=22.08 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=20.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
...|+|-|.-|+||||+++.+.+.
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~~ 27 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVAL 27 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 429999898677899999999998
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=87.16 E-value=0.25 Score=21.08 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.|+|.|.+|+|||||...+...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.12 E-value=0.24 Score=21.14 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.++|.+|+|||+|...+..+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979989999999998098
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.08 E-value=0.21 Score=21.54 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998689880999999998
Q 000568 219 VIPIIGMGGLGKTTLAQLVY 238 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~ 238 (1416)
-|.+.|.+|+|||+|...+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=87.01 E-value=0.29 Score=20.62 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.--|.++|.+|+|||||...+...
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 779999999998999999999648
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=86.88 E-value=0.21 Score=21.63 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=19.9
Q ss_pred EEEEEECCC-CCCHHHHHHHHHCCC
Q ss_conf 899998689-880999999998042
Q 000568 218 SVIPIIGMG-GLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~-GiGKTtLa~~v~~~~ 241 (1416)
+.+.|.|-| |+||||++-.++...
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aL 26 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAA 26 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5199998999942999999999999
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.88 E-value=0.28 Score=20.73 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.++|.+|+|||+|.+.+.+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.86 E-value=0.26 Score=21.00 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.++|.+|+|||+|...+....
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.72 E-value=0.24 Score=21.13 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
--|.++|.+|+|||+|.+.+...
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998992999999999728
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.64 E-value=0.29 Score=20.63 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-+.++|..|+|||+|...+.++.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~ 28 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKI 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989959899999997098
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.51 E-value=0.27 Score=20.80 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-+.++|..|+|||+|.+.+.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~~~ 26 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDC 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999959899999997299
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.39 E-value=0.28 Score=20.68 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||+|...+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.24 E-value=0.34 Score=20.13 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
...|+|+|.+|+|||||...+...
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 619999979999899999999589
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.23 E-value=0.27 Score=20.87 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||||+..+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=86.13 E-value=0.2 Score=21.70 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 38999986898809999999980
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
..+++|.|+.|.|||||.+.+..
T Consensus 25 Gei~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 25 GEILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp TCEEECBCCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999998999809999999948
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=85.75 E-value=0.3 Score=20.52 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998689880999999998042
Q 000568 219 VIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
-|.+.|.+|+|||||...+....
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.72 E-value=0.3 Score=20.50 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||||...+...
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.71 E-value=0.3 Score=20.57 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.-|.+.|.+|+|||+|.+++...
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~ 29 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRIL 29 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 77999989999889999989509
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.44 E-value=0.25 Score=21.02 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.+.|.+|+|||+|.+.+..+
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999999679
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.11 E-value=0.33 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998689880999999998042
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
--+.+.|.+|+|||+|...+.+..
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989978999999997197
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.73 E-value=0.31 Score=20.39 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|+|+|.+|+|||||...+...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=84.71 E-value=0.24 Score=21.21 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999868988099999999804
Q 000568 220 IPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 220 i~I~G~~GiGKTtLa~~v~~~ 240 (1416)
|+|+|.+|+|||||...+...
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=84.63 E-value=0.59 Score=18.55 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHH-HHHH
Q ss_conf 9999868988099999-9998
Q 000568 219 VIPIIGMGGLGKTTLA-QLVY 238 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa-~~v~ 238 (1416)
.+.|.|.+|.||||.+ ..+.
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~ 36 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIA 36 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHHH
T ss_conf 989996288438999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.46 E-value=0.33 Score=20.27 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9389999868988099999999804
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
..|-|+|+|.+|.|||||+..+...
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~ 29 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYY 29 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 2029999958989989999999996
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=84.29 E-value=0.49 Score=19.12 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
+-+.|.|..|.||||+.+.+...
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHH
T ss_conf 88899940356625789998653
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=84.03 E-value=0.52 Score=18.92 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=19.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 38999986898809999999980
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
..-+.|.|.+|+||||+|..+..
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999980899998999999998
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=83.67 E-value=0.28 Score=20.70 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|+|+|.+++|||||...+...
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=83.66 E-value=0.23 Score=21.30 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 93899998689880999999998042
Q 000568 216 GFSVIPIIGMGGLGKTTLAQLVYNDH 241 (1416)
Q Consensus 216 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 241 (1416)
..+ |.++|.+|+|||||.+.+.+..
T Consensus 12 ~~k-IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 12 EMR-ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp CEE-EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEE-EEEECCCCCCHHHHHHHHHCCC
T ss_conf 479-9999999987899999984488
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=82.94 E-value=0.48 Score=19.14 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999868988099999999804
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
--|+|.|..|+|||||...+...
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 88999999999999999999778
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.84 E-value=0.21 Score=21.61 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||+|...+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=82.75 E-value=0.6 Score=18.52 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999986898809999999980
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
.-+.|.|++|+||||+|..+..
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 9999981899998999999998
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=82.61 E-value=0.24 Score=21.20 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=19.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 389999868988099999999804
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.--|.++|.+|+|||||...+...
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 689999999999889999887338
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=82.52 E-value=0.52 Score=18.92 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 38999986898809999999980
Q 000568 217 FSVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 217 ~~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
.|-|+|.|..|.|||||+..+..
T Consensus 2 iRNv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 2 IRTVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH
T ss_conf 50999994889809999999999
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=82.10 E-value=0.75 Score=17.89 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 67999999983288889999389999868988099999999804
Q 000568 197 TEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 197 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.-+..+..+|... ++-..+.++|+++.|||.+|..+..-
T Consensus 38 ~Fl~~l~~~l~~~-----PKkn~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 38 TFLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp HHHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-----CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999997389-----87318999889985689999999998
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=81.90 E-value=0.49 Score=19.12 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|+++|.+|+|||||...+...
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999899999899999999688
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=81.66 E-value=0.36 Score=19.98 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=21.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99389999868988099999999804
Q 000568 215 GGFSVIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 215 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
.....|+|+|.+++|||||...+...
T Consensus 14 ~~~~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 14 DTGIEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 66978999889999899999998589
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.17 E-value=0.29 Score=20.64 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999868988099999999804
Q 000568 219 VIPIIGMGGLGKTTLAQLVYND 240 (1416)
Q Consensus 219 vi~I~G~~GiGKTtLa~~v~~~ 240 (1416)
-|.++|.+|+|||||...+..+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=81.07 E-value=0.81 Score=17.65 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=19.8
Q ss_pred EHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
Q ss_conf 046799999998328888999938999986898809999999
Q 000568 195 RETEKKEIVELLLRDDLRNDGGFSVIPIIGMGGLGKTTLAQL 236 (1416)
Q Consensus 195 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~ 236 (1416)
...+..++++.. . ..+.|.|.+|.||||.+-+
T Consensus 12 L~~eQ~~~v~~~---~-------g~~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 12 LNKEQQEAVRTT---E-------GPLLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp SCHHHHHHHHCC---S-------SCEEEEECTTSCHHHHHHH
T ss_pred CCHHHHHHHHCC---C-------CCEEEEECCCCCHHHHHHH
T ss_conf 789999998299---9-------9989995298668999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=80.52 E-value=0.77 Score=17.79 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999986898809999999980
Q 000568 218 SVIPIIGMGGLGKTTLAQLVYN 239 (1416)
Q Consensus 218 ~vi~I~G~~GiGKTtLa~~v~~ 239 (1416)
.-+.|.|.+|+||||+|..+..
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999980899999999999998
|