Citrus Sinensis ID: 000569
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1415 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LZX8 | 1793 | Brefeldin A-inhibited gua | yes | no | 0.980 | 0.774 | 0.775 | 0.0 | |
| Q9LPC5 | 1750 | Brefeldin A-inhibited gua | no | no | 0.965 | 0.780 | 0.728 | 0.0 | |
| F4JSZ5 | 1687 | Brefeldin A-inhibited gua | no | no | 0.956 | 0.802 | 0.530 | 0.0 | |
| F4JN05 | 1706 | Brefeldin A-inhibited gua | no | no | 0.951 | 0.788 | 0.520 | 0.0 | |
| F4IXW2 | 1739 | Brefeldin A-inhibited gua | no | no | 0.730 | 0.594 | 0.403 | 0.0 | |
| Q9Y6D5 | 1785 | Brefeldin A-inhibited gua | yes | no | 0.844 | 0.669 | 0.352 | 0.0 | |
| Q7TSU1 | 1791 | Brefeldin A-inhibited gua | yes | no | 0.853 | 0.673 | 0.345 | 0.0 | |
| A2A5R2 | 1792 | Brefeldin A-inhibited gua | yes | no | 0.852 | 0.672 | 0.347 | 0.0 | |
| G3X9K3 | 1846 | Brefeldin A-inhibited gua | no | no | 0.732 | 0.561 | 0.365 | 0.0 | |
| D4A631 | 1846 | Brefeldin A-inhibited gua | no | no | 0.845 | 0.648 | 0.337 | 0.0 |
| >sp|Q9LZX8|BIG2_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Arabidopsis thaliana GN=BIG2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2209 bits (5725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1092/1408 (77%), Positives = 1232/1408 (87%), Gaps = 20/1408 (1%)
Query: 21 GWLIALTTRFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFF 80
G + + +F IKQ+LCLSLLKNSASTLMI+FQLSCSIF+SLV+RFRAGLKAEIGVFF
Sbjct: 393 GAVFRTSEKFSADIKQFLCLSLLKNSASTLMIIFQLSCSIFISLVARFRAGLKAEIGVFF 452
Query: 81 PMIVLRVLENVAQPNFQQKMIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIFERMVNGL 140
PMIVLRV+ENVAQPNFQQKMIVLRFL+KLC+DSQILVDIF+NYDCDVNSSNIFERMVNGL
Sbjct: 453 PMIVLRVVENVAQPNFQQKMIVLRFLDKLCLDSQILVDIFLNYDCDVNSSNIFERMVNGL 512
Query: 141 LKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSMGDWMNKQLRIPDPQSTKKFEAV 200
LKTAQGVPP TAT+L+PPQE+ MKLEAMKCLVAIL+SMGDW+NKQLR+P S K + +
Sbjct: 513 LKTAQGVPPGTATTLMPPQEAAMKLEAMKCLVAILKSMGDWLNKQLRLPVSNSLNKSDVI 572
Query: 201 ENISSGPEPGTVPMANGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISLFN 260
E I GP G+ +ANGN DE +GSD++SE+S SD IEQRRAYKLELQEGISLFN
Sbjct: 573 E-IDLGP--GSPQLANGNADESADGSDTYSESSGGTSDALAIEQRRAYKLELQEGISLFN 629
Query: 261 RKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSF 320
RKP KGIEFLINA KVG +PEEIA FLK+AS LNKTLIGDYLGERE+L LKVMHAYVDSF
Sbjct: 630 RKPTKGIEFLINAGKVGESPEEIAGFLKDASGLNKTLIGDYLGEREDLALKVMHAYVDSF 689
Query: 321 DFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVI 380
DF+ MEFDEAIR FL GFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSAD+AYVLAYSVI
Sbjct: 690 DFRGMEFDEAIRTFLEGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADSAYVLAYSVI 749
Query: 381 LLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQ 440
+LNTD+HNPMVKNKMSADDFIRNNRGIDDGKDLP +Y+RSL+ERI+++EIKMK DDL +Q
Sbjct: 750 MLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPADYMRSLYERITKHEIKMKEDDLRLQ 809
Query: 441 QMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAATD 500
Q Q NSNR+LGLD ILNIVIRK+ + Y ETSDDL++HMQEQFKEKARKSES Y+AATD
Sbjct: 810 QKQYANSNRMLGLDGILNIVIRKQWGDSYAETSDDLMKHMQEQFKEKARKSESTYYAATD 869
Query: 501 VVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVT 560
VVILRFMIEACWAPMLAAFSVPLDQSDD ++I +CL+GF +AI T++MSMKTHRDAFVT
Sbjct: 870 VVILRFMIEACWAPMLAAFSVPLDQSDDLIVINICLEGFHHAIHATSLMSMKTHRDAFVT 929
Query: 561 SLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGA 620
SLAKFTSLHSPADIKQ+NI+AIKAI+ +ADE+GNYLQ+AWEHILTCVSRFE LHLLGEGA
Sbjct: 930 SLAKFTSLHSPADIKQRNIEAIKAILRLADEEGNYLQDAWEHILTCVSRFEQLHLLGEGA 989
Query: 621 PPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYDSAGIGGSASGV 680
PPDATFFA Q+ESEKSKQ K ILPVLK+KGPG+ QYAA V+RG+YDS +GG S
Sbjct: 990 PPDATFFASKQNESEKSKQPKQYILPVLKRKGPGKSQYAATGVLRGSYDSMSLGGKGSKN 1049
Query: 681 VTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDP 740
V EQM+++VSNLN+LEQVG EMN++F++SQKLNSEAIIDFVKALCKVSM+ELRS S+P
Sbjct: 1050 VRQEQMSSIVSNLNLLEQVG--EMNQVFSQSQKLNSEAIIDFVKALCKVSMDELRSPSNP 1107
Query: 741 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKF 800
RVFSLTKIVEIAHYNMNRIRLVWSSIW VLS FFV IGCSENLSIAIFAMDSLRQLSMKF
Sbjct: 1108 RVFSLTKIVEIAHYNMNRIRLVWSSIWQVLSGFFVTIGCSENLSIAIFAMDSLRQLSMKF 1167
Query: 801 LEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 860
LEREELANYNFQNEFM PFVIVMR+SN VEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV
Sbjct: 1168 LEREELANYNFQNEFMTPFVIVMRRSNDVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1227
Query: 861 FTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISL 920
FTTAAYDDHKNIV L+FEIIEKIIR+YFPYITETETTTFTDCVNCL+AFTN+RF+KDISL
Sbjct: 1228 FTTAAYDDHKNIVFLSFEIIEKIIREYFPYITETETTTFTDCVNCLVAFTNNRFSKDISL 1287
Query: 921 NAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYF 980
++IAFLR+CATKLAEGDL++ S+NK K S KIP +S K K ENGE+++ ++HLYF
Sbjct: 1288 SSIAFLRYCATKLAEGDLNSPSTNKYKGTSGKIPQSSLHSGKSGKQENGEIVN-NNHLYF 1346
Query: 981 WFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRH 1040
WFPLL+GLSELSFDPRPEIRKSALQ++F+TLRNHGHLFSLPLWE+VF+SVLFPIFDYVRH
Sbjct: 1347 WFPLLSGLSELSFDPRPEIRKSALQIMFDTLRNHGHLFSLPLWEKVFESVLFPIFDYVRH 1406
Query: 1041 TIDPSGEN-SPGQGVD-GDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLM 1098
+IDPSGE+ S QG G+ ELD DAWLYETCTLALQLVVDLFVKFY TVNPLL KVLM
Sbjct: 1407 SIDPSGEDESADQGSSGGEVDELDHDAWLYETCTLALQLVVDLFVKFYTTVNPLLEKVLM 1466
Query: 1099 LLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKATLPDFSYLGS 1158
LLVSFIKRPHQSLAGIGIAAFVRLMS+A LFS+EKWLEV +LKEAAK T PDFSY S
Sbjct: 1467 LLVSFIKRPHQSLAGIGIAAFVRLMSDADGLFSEEKWLEVVSALKEAAKTTCPDFSYFLS 1526
Query: 1159 EDCMAEIAAKGQINVESSG--SGLP---DDDSENLRT-QHLFACIADAKCRAAVQLLLIQ 1212
E+ +A + + +N+++S S P D + E+ RT HL+A I+DAKCRAAVQLLLIQ
Sbjct: 1527 EEYVAR-SQRSALNIQNSNAESAAPTATDGNEESQRTATHLYAAISDAKCRAAVQLLLIQ 1585
Query: 1213 AVMEIYNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLL 1272
AVMEIYNMYRP LSAKNTLVL +ALH +A HAH INS+ LRS+LQE G MTQMQDPPLL
Sbjct: 1586 AVMEIYNMYRPQLSAKNTLVLVDALHGVALHAHGINSNTILRSRLQELGPMTQMQDPPLL 1645
Query: 1273 RLENESFQICLTFLQNIILDRPP---TYEEADVESHLVNLCQEVLQLYIETSNHGQT--S 1327
RLENES+QICLTFLQN++ D+ EE ++ES LVN+CQEVL YIETS+ + S
Sbjct: 1646 RLENESYQICLTFLQNLVADKTKKEEEEEEEEIESLLVNICQEVLNFYIETSSSAKKLQS 1705
Query: 1328 ESSASGQVRWLIPLGSGKRRELAARAPLIVATLQAICTLEETSFEKNLACFFPLLSSLIS 1387
ESS + + RW IPLGSGKRREL+ARAPLIVATLQA+CTL+E SFEKNL C FPLL++LIS
Sbjct: 1706 ESSRASEYRWRIPLGSGKRRELSARAPLIVATLQAMCTLDEASFEKNLKCLFPLLANLIS 1765
Query: 1388 CEHGSNEIQVALSDMLDASVGPILLRTC 1415
CEHGSNE+Q AL+DML SVGP+LL+ C
Sbjct: 1766 CEHGSNEVQTALADMLGLSVGPVLLQWC 1793
|
Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPC5|BIG3_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Arabidopsis thaliana GN=BIG3 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|F4JSZ5|BIG1_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Arabidopsis thaliana GN=BIG1 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|F4JN05|BIG4_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 4 OS=Arabidopsis thaliana GN=BIG4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|F4IXW2|BIG5_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 5 OS=Arabidopsis thaliana GN=BIG5 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q9Y6D5|BIG2_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|Q7TSU1|BIG2_RAT Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Rattus norvegicus GN=Arfgef2 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|A2A5R2|BIG2_MOUSE Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Mus musculus GN=Arfgef2 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|G3X9K3|BIG1_MOUSE Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Mus musculus GN=Arfgef1 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|D4A631|BIG1_RAT Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Rattus norvegicus GN=Arfgef1 PE=1 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1415 | ||||||
| 225453927 | 1779 | PREDICTED: brefeldin A-inhibited guanine | 0.983 | 0.781 | 0.869 | 0.0 | |
| 296089160 | 1753 | unnamed protein product [Vitis vinifera] | 0.976 | 0.788 | 0.874 | 0.0 | |
| 255541336 | 1780 | cytohesin 1, 2, 3, putative [Ricinus com | 0.983 | 0.781 | 0.876 | 0.0 | |
| 224127398 | 1783 | predicted protein [Populus trichocarpa] | 0.981 | 0.779 | 0.867 | 0.0 | |
| 356568286 | 1783 | PREDICTED: brefeldin A-inhibited guanine | 0.980 | 0.778 | 0.835 | 0.0 | |
| 356532091 | 1784 | PREDICTED: brefeldin A-inhibited guanine | 0.982 | 0.779 | 0.837 | 0.0 | |
| 356496404 | 1783 | PREDICTED: brefeldin A-inhibited guanine | 0.980 | 0.778 | 0.836 | 0.0 | |
| 357506873 | 1789 | Brefeldin A-inhibited guanine nucleotide | 0.982 | 0.776 | 0.829 | 0.0 | |
| 449432241 | 1785 | PREDICTED: brefeldin A-inhibited guanine | 0.982 | 0.778 | 0.834 | 0.0 | |
| 449480072 | 1785 | PREDICTED: LOW QUALITY PROTEIN: brefeldi | 0.982 | 0.778 | 0.833 | 0.0 |
| >gi|225453927|ref|XP_002279696.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2502 bits (6485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1216/1398 (86%), Positives = 1296/1398 (92%), Gaps = 7/1398 (0%)
Query: 21 GWLIALTTRFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFF 80
G + + RFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIF+SLVSRFRAGLKAEIGVFF
Sbjct: 386 GAIFRTSERFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFISLVSRFRAGLKAEIGVFF 445
Query: 81 PMIVLRVLENVAQPNFQQKMIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIFERMVNGL 140
PMIVLRVLENVAQPNFQQKMIVLRFLEKLC+DSQILVDIFINYDCDVNSSNIFERMVNGL
Sbjct: 446 PMIVLRVLENVAQPNFQQKMIVLRFLEKLCVDSQILVDIFINYDCDVNSSNIFERMVNGL 505
Query: 141 LKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSMGDWMNKQLRIPDPQSTKKFEAV 200
LKTAQGVPP AT+LLPPQE TMKLEAM+CLVAIL+SMGDWMNKQLRIPDP STKK EAV
Sbjct: 506 LKTAQGVPPGVATTLLPPQEVTMKLEAMRCLVAILKSMGDWMNKQLRIPDPHSTKKIEAV 565
Query: 201 ENISSGPEPGTVPMANGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISLFN 260
EN PEPG++P+ANGNGDE EGSDSHSEAS E+SDVSTIEQRRAYKLELQEGI+LFN
Sbjct: 566 EN---SPEPGSLPVANGNGDEPAEGSDSHSEASGEVSDVSTIEQRRAYKLELQEGIALFN 622
Query: 261 RKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSF 320
RKPKKGIEFLINA KVGNTPEEIAAFLKNASDLNKTLIGDYLGEREEL LKVMHAYVDSF
Sbjct: 623 RKPKKGIEFLINANKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELSLKVMHAYVDSF 682
Query: 321 DFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVI 380
DFQ MEFDEAIR FL GFRLPGEAQKIDRIMEKFAERYCKCNPK FTSADTAYVLAYSVI
Sbjct: 683 DFQNMEFDEAIRTFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFTSADTAYVLAYSVI 742
Query: 381 LLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQ 440
+LNTD+HNPMVKNKMS DDFIRNNRGIDDGKDLPE+Y+RSL+ERISRNEIKMK DDLA Q
Sbjct: 743 MLNTDAHNPMVKNKMSPDDFIRNNRGIDDGKDLPEDYMRSLYERISRNEIKMKEDDLAPQ 802
Query: 441 QMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAATD 500
Q QSMN+NRILGLDSILNIVIRKRGE+ +METSDDLIRHMQEQFKEKARKSESVY+AATD
Sbjct: 803 QKQSMNANRILGLDSILNIVIRKRGEDNHMETSDDLIRHMQEQFKEKARKSESVYYAATD 862
Query: 501 VVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVT 560
VVILRFMIE CWAPMLAAFSVPLDQSDDE++IA CL+G R AI VTAVMSMKTHRDAFVT
Sbjct: 863 VVILRFMIEVCWAPMLAAFSVPLDQSDDEIVIAQCLEGIRCAIHVTAVMSMKTHRDAFVT 922
Query: 561 SLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGA 620
SLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGA
Sbjct: 923 SLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGA 982
Query: 621 PPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYDSAGIGGSASGV 680
PPDATFFA PQ++ EKSKQAKSTILPVLKKKGPG+IQYAAA V RG+YDSAGIGG+ASGV
Sbjct: 983 PPDATFFAIPQNDLEKSKQAKSTILPVLKKKGPGKIQYAAAAVRRGSYDSAGIGGNASGV 1042
Query: 681 VTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDP 740
VTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVS+EELRSASDP
Sbjct: 1043 VTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSIEELRSASDP 1102
Query: 741 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKF 800
RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFV IGCSENLSIAIFAMDSLRQLSMKF
Sbjct: 1103 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKF 1162
Query: 801 LEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 860
LEREELANYNFQNEFMKPFVIVMRKS+AVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV
Sbjct: 1163 LEREELANYNFQNEFMKPFVIVMRKSSAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1222
Query: 861 FTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISL 920
FTTAAYDDHKNIVLLAFEIIEKI+RDYFPYITETETTTFTDCVNCLIAFTNSRFNK+ISL
Sbjct: 1223 FTTAAYDDHKNIVLLAFEIIEKIVRDYFPYITETETTTFTDCVNCLIAFTNSRFNKEISL 1282
Query: 921 NAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYF 980
NAIAFLRFCA KLAEGDL +SS N+DKE KI P+SP+ K+ K +NGE+ D+DDHLYF
Sbjct: 1283 NAIAFLRFCAAKLAEGDLGSSSRNRDKEAPGKITPSSPQAGKDRKHDNGELTDRDDHLYF 1342
Query: 981 WFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRH 1040
WFPLLAGLSELSFDPRPEIRKSALQVLF+TLRNHGH FSLPLWERVF+SVLFPIFDYVRH
Sbjct: 1343 WFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHHFSLPLWERVFESVLFPIFDYVRH 1402
Query: 1041 TIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLL 1100
IDPSG N GQ +DGD+GELDQDAWLYETCTLALQLVVDLFVKFY+TVNPLLRKV+MLL
Sbjct: 1403 AIDPSGGNMSGQ-LDGDSGELDQDAWLYETCTLALQLVVDLFVKFYDTVNPLLRKVMMLL 1461
Query: 1101 VSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKATLPDFSYLGSED 1160
VSFIKRPHQSLAGIGIAAFVRLMS+AG+LFSDEKWLEV SLKEAA ATLPDFSY+ + D
Sbjct: 1462 VSFIKRPHQSLAGIGIAAFVRLMSSAGDLFSDEKWLEVVLSLKEAANATLPDFSYIVNGD 1521
Query: 1161 CMA---EIAAKGQINVESSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAVMEI 1217
M E ++ Q N ES+GSG DDDSE L++ L+A ++DAKCRAAVQLLLIQAVMEI
Sbjct: 1522 GMVQNLEESSSRQSNGESAGSGTTDDDSEGLKSHRLYAAVSDAKCRAAVQLLLIQAVMEI 1581
Query: 1218 YNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENE 1277
YNMYRP LSAKN +VLF A+HD+A HAHKINS+ LRSKLQE GSMTQMQDPPLLRLENE
Sbjct: 1582 YNMYRPRLSAKNIIVLFNAMHDVASHAHKINSNTILRSKLQELGSMTQMQDPPLLRLENE 1641
Query: 1278 SFQICLTFLQNIILDRPPTYEEADVESHLVNLCQEVLQLYIETSNHGQTSESSASGQVRW 1337
S+QICLT LQN+ILDRPP+YEEA+VES+LV+LC EVLQ Y+ET+ GQ ESS Q RW
Sbjct: 1642 SYQICLTLLQNLILDRPPSYEEAEVESYLVDLCHEVLQFYVETARSGQIPESSLGVQPRW 1701
Query: 1338 LIPLGSGKRRELAARAPLIVATLQAICTLEETSFEKNLACFFPLLSSLISCEHGSNEIQV 1397
LIPLGSGKRRELA RAPL+V TLQA+C L +TSFE+NLA FFPLLSSLI CEHGSNE+QV
Sbjct: 1702 LIPLGSGKRRELATRAPLVVVTLQAVCGLGDTSFERNLAQFFPLLSSLIGCEHGSNEVQV 1761
Query: 1398 ALSDMLDASVGPILLRTC 1415
ALS+ML +SVGP+LLR+C
Sbjct: 1762 ALSEMLRSSVGPVLLRSC 1779
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089160|emb|CBI38863.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255541336|ref|XP_002511732.1| cytohesin 1, 2, 3, putative [Ricinus communis] gi|223548912|gb|EEF50401.1| cytohesin 1, 2, 3, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224127398|ref|XP_002320064.1| predicted protein [Populus trichocarpa] gi|222860837|gb|EEE98379.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356568286|ref|XP_003552344.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356532091|ref|XP_003534607.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356496404|ref|XP_003517058.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357506873|ref|XP_003623725.1| Brefeldin A-inhibited guanine nucleotide-exchange protein [Medicago truncatula] gi|355498740|gb|AES79943.1| Brefeldin A-inhibited guanine nucleotide-exchange protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449432241|ref|XP_004133908.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449480072|ref|XP_004155791.1| PREDICTED: LOW QUALITY PROTEIN: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1415 | ||||||
| TAIR|locus:2101906 | 1793 | AT3G60860 "AT3G60860" [Arabido | 0.980 | 0.774 | 0.752 | 0.0 | |
| UNIPROTKB|Q10P53 | 1789 | Os03g0246800 "Sec7 domain cont | 0.969 | 0.766 | 0.732 | 0.0 | |
| TAIR|locus:2025502 | 1750 | EDA10 "AT1G01960" [Arabidopsis | 0.806 | 0.652 | 0.743 | 0.0 | |
| TAIR|locus:2122143 | 1706 | AT4G35380 "AT4G35380" [Arabido | 0.798 | 0.662 | 0.550 | 0.0 | |
| UNIPROTKB|A8J189 | 2150 | CHLREDRAFT_148829 "SEC7/BIG-li | 0.269 | 0.177 | 0.475 | 2.4e-247 | |
| TAIR|locus:2084706 | 1739 | ATMIN7 "AT3G43300" [Arabidopsi | 0.260 | 0.212 | 0.475 | 1e-215 | |
| ZFIN|ZDB-GENE-030131-108 | 1849 | arfgef1 "ADP-ribosylation fact | 0.404 | 0.309 | 0.415 | 1.2e-191 | |
| FB|FBgn0028538 | 1653 | Sec71 "Sec71 ortholog (S. cere | 0.4 | 0.342 | 0.413 | 6.7e-191 | |
| MGI|MGI:2442988 | 1846 | Arfgef1 "ADP-ribosylation fact | 0.409 | 0.313 | 0.410 | 7.9e-190 | |
| UNIPROTKB|Q9Y6D6 | 1849 | ARFGEF1 "Brefeldin A-inhibited | 0.409 | 0.313 | 0.410 | 1.8e-189 |
| TAIR|locus:2101906 AT3G60860 "AT3G60860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5356 (1890.5 bits), Expect = 0., P = 0.
Identities = 1060/1408 (75%), Positives = 1194/1408 (84%)
Query: 21 GWLIALTTRFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFF 80
G + + +F IKQ+LCLSLLKNSASTLMI+FQLSCSIF+SLV+RFRAGLKAEIGVFF
Sbjct: 393 GAVFRTSEKFSADIKQFLCLSLLKNSASTLMIIFQLSCSIFISLVARFRAGLKAEIGVFF 452
Query: 81 PMIVLRVLENVAQPNFQQKMIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIFERMVNGL 140
PMIVLRV+ENVAQPNFQQKMIVLRFL+KLC+DSQILVDIF+NYDCDVNSSNIFERMVNGL
Sbjct: 453 PMIVLRVVENVAQPNFQQKMIVLRFLDKLCLDSQILVDIFLNYDCDVNSSNIFERMVNGL 512
Query: 141 LKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSMGDWMNKQLRIPDPQSTKKFEAV 200
LKTAQGVPP TAT+L+PPQE+ MKLEAMKCLVAIL+SMGDW+NKQLR+P S K + +
Sbjct: 513 LKTAQGVPPGTATTLMPPQEAAMKLEAMKCLVAILKSMGDWLNKQLRLPVSNSLNKSDVI 572
Query: 201 ENISSGPEPGTVPMANGNGDELVEGXXXXXXXXXXXXXXXTIEQRRAYKLELQEGISLFN 260
E I GP G+ +ANGN DE +G IEQRRAYKLELQEGISLFN
Sbjct: 573 E-IDLGP--GSPQLANGNADESADGSDTYSESSGGTSDALAIEQRRAYKLELQEGISLFN 629
Query: 261 RKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSF 320
RKP KGIEFLINA KVG +PEEIA FLK+AS LNKTLIGDYLGERE+L LKVMHAYVDSF
Sbjct: 630 RKPTKGIEFLINAGKVGESPEEIAGFLKDASGLNKTLIGDYLGEREDLALKVMHAYVDSF 689
Query: 321 DFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVI 380
DF+ MEFDEAIR FL GFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSAD+AYVLAYSVI
Sbjct: 690 DFRGMEFDEAIRTFLEGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADSAYVLAYSVI 749
Query: 381 LLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQ 440
+LNTD+HNPMVKNKMSADDFIRNNRGIDDGKDLP +Y+RSL+ERI+++EIKMK DDL +Q
Sbjct: 750 MLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPADYMRSLYERITKHEIKMKEDDLRLQ 809
Query: 441 QMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAATD 500
Q Q NSNR+LGLD ILNIVIRK+ + Y ETSDDL++HMQEQFKEKARKSES Y+AATD
Sbjct: 810 QKQYANSNRMLGLDGILNIVIRKQWGDSYAETSDDLMKHMQEQFKEKARKSESTYYAATD 869
Query: 501 VVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVT 560
VVILRFMIEACWAPMLAAFSVPLDQSDD ++I +CL+GF +AI T++MSMKTHRDAFVT
Sbjct: 870 VVILRFMIEACWAPMLAAFSVPLDQSDDLIVINICLEGFHHAIHATSLMSMKTHRDAFVT 929
Query: 561 SLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGA 620
SLAKFTSLHSPADIKQ+NI+AIKAI+ +ADE+GNYLQ+AWEHILTCVSRFE LHLLGEGA
Sbjct: 930 SLAKFTSLHSPADIKQRNIEAIKAILRLADEEGNYLQDAWEHILTCVSRFEQLHLLGEGA 989
Query: 621 PPDATFFAFPXXXXXXXXXXXXTILPVLKKKGPGRIQYAAATVMRXXXXXXXXXXXXXXV 680
PPDATFFA ILPVLK+KGPG+ QYAA V+R
Sbjct: 990 PPDATFFASKQNESEKSKQPKQYILPVLKRKGPGKSQYAATGVLRGSYDSMSLGGKGSKN 1049
Query: 681 VTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDP 740
V EQM+++VSNLN+LEQVG EMN++F++SQKLNSEAIIDFVKALCKVSM+ELRS S+P
Sbjct: 1050 VRQEQMSSIVSNLNLLEQVG--EMNQVFSQSQKLNSEAIIDFVKALCKVSMDELRSPSNP 1107
Query: 741 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKF 800
RVFSLTKIVEIAHYNMNRIRLVWSSIW VLS FFV IGCSENLSIAIFAMDSLRQLSMKF
Sbjct: 1108 RVFSLTKIVEIAHYNMNRIRLVWSSIWQVLSGFFVTIGCSENLSIAIFAMDSLRQLSMKF 1167
Query: 801 LEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 860
LEREELANYNFQNEFM PFVIVMR+SN VEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV
Sbjct: 1168 LEREELANYNFQNEFMTPFVIVMRRSNDVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1227
Query: 861 FTTAAYDDHKNIVLLAFEIIEKIIRDYFPYIXXXXXXXXXDCVNCLIAFTNSRFNKDISL 920
FTTAAYDDHKNIV L+FEIIEKIIR+YFPYI DCVNCL+AFTN+RF+KDISL
Sbjct: 1228 FTTAAYDDHKNIVFLSFEIIEKIIREYFPYITETETTTFTDCVNCLVAFTNNRFSKDISL 1287
Query: 921 NAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYF 980
++IAFLR+CATKLAEGDL++ S+NK K S KIP +S K K ENGE+++ ++HLYF
Sbjct: 1288 SSIAFLRYCATKLAEGDLNSPSTNKYKGTSGKIPQSSLHSGKSGKQENGEIVN-NNHLYF 1346
Query: 981 WFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRH 1040
WFPLL+GLSELSFDPRPEIRKSALQ++F+TLRNHGHLFSLPLWE+VF+SVLFPIFDYVRH
Sbjct: 1347 WFPLLSGLSELSFDPRPEIRKSALQIMFDTLRNHGHLFSLPLWEKVFESVLFPIFDYVRH 1406
Query: 1041 TIDPSGEN-SPGQGVDG-DTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLM 1098
+IDPSGE+ S QG G + ELD DAWLYETCTLALQLVVDLFVKFY TVNPLL KVLM
Sbjct: 1407 SIDPSGEDESADQGSSGGEVDELDHDAWLYETCTLALQLVVDLFVKFYTTVNPLLEKVLM 1466
Query: 1099 LLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKATLPDFSYLGS 1158
LLVSFIKRPHQSLAGIGIAAFVRLMS+A LFS+EKWLEV +LKEAAK T PDFSY S
Sbjct: 1467 LLVSFIKRPHQSLAGIGIAAFVRLMSDADGLFSEEKWLEVVSALKEAAKTTCPDFSYFLS 1526
Query: 1159 EDCMAEIAAKGQINVESSG--SGLP---DDDSENLRTQ-HLFACIADAKCRAAVQLLLIQ 1212
E+ +A + + +N+++S S P D + E+ RT HL+A I+DAKCRAAVQLLLIQ
Sbjct: 1527 EEYVAR-SQRSALNIQNSNAESAAPTATDGNEESQRTATHLYAAISDAKCRAAVQLLLIQ 1585
Query: 1213 AVMEIYNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLL 1272
AVMEIYNMYRP LSAKNTLVL +ALH +A HAH INS+ LRS+LQE G MTQMQDPPLL
Sbjct: 1586 AVMEIYNMYRPQLSAKNTLVLVDALHGVALHAHGINSNTILRSRLQELGPMTQMQDPPLL 1645
Query: 1273 RLENESFQICLTFLQNIILDRPPTYEEAD---VESHLVNLCQEVLQLYIETSNHGQT--S 1327
RLENES+QICLTFLQN++ D+ EE + +ES LVN+CQEVL YIETS+ + S
Sbjct: 1646 RLENESYQICLTFLQNLVADKTKKEEEEEEEEIESLLVNICQEVLNFYIETSSSAKKLQS 1705
Query: 1328 ESSASGQVRWLIPLGSGKRRELAARAPLIVATLQAICTLEETSFEKNLACFFPLLSSLIS 1387
ESS + + RW IPLGSGKRREL+ARAPLIVATLQA+CTL+E SFEKNL C FPLL++LIS
Sbjct: 1706 ESSRASEYRWRIPLGSGKRRELSARAPLIVATLQAMCTLDEASFEKNLKCLFPLLANLIS 1765
Query: 1388 CEHGSNEIQVALSDMLDASVGPILLRTC 1415
CEHGSNE+Q AL+DML SVGP+LL+ C
Sbjct: 1766 CEHGSNEVQTALADMLGLSVGPVLLQWC 1793
|
|
| UNIPROTKB|Q10P53 Os03g0246800 "Sec7 domain containing protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2025502 EDA10 "AT1G01960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2122143 AT4G35380 "AT4G35380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A8J189 CHLREDRAFT_148829 "SEC7/BIG-like ARF-guanine nucleotide exchange factor" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2084706 ATMIN7 "AT3G43300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-108 arfgef1 "ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0028538 Sec71 "Sec71 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2442988 Arfgef1 "ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9Y6D6 ARFGEF1 "Brefeldin A-inhibited guanine nucleotide-exchange protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LZX8 | BIG2_ARATH | No assigned EC number | 0.7755 | 0.9809 | 0.7741 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1415 | |||
| PLN03076 | 1780 | PLN03076, PLN03076, ARF guanine nucleotide exchang | 0.0 | |
| COG5307 | 1024 | COG5307, COG5307, SEC7 domain proteins [General fu | 6e-97 | |
| pfam01369 | 188 | pfam01369, Sec7, Sec7 domain | 1e-85 | |
| cd00171 | 185 | cd00171, Sec7, Sec7 domain; Domain named after the | 2e-81 | |
| smart00222 | 189 | smart00222, Sec7, Sec7 domain | 3e-74 | |
| pfam12783 | 166 | pfam12783, Sec7_N, Guanine nucleotide exchange fac | 2e-39 | |
| pfam09324 | 86 | pfam09324, DUF1981, Domain of unknown function (DU | 6e-35 |
| >gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Score = 2834 bits (7349), Expect = 0.0
Identities = 1199/1388 (86%), Positives = 1278/1388 (92%), Gaps = 8/1388 (0%)
Query: 29 RFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVL 88
RFLGAIKQYLCLSLLKNSAS+LMI+FQLSCSIF+SLVSRFRAGLKAEIGVFFPMIVLRVL
Sbjct: 400 RFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVL 459
Query: 89 ENVAQPNFQQKMIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVP 148
ENVAQPNFQQKMIVLRFL+KLC+DSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVP
Sbjct: 460 ENVAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVP 519
Query: 149 PSTATSLLPPQESTMKLEAMKCLVAILRSMGDWMNKQLRIPDPQSTKKFEAVENISSGPE 208
P T+LLPPQE+ MKLEAMKCLVAILRSMGDWMNKQLR+PDP S KK +AVEN E
Sbjct: 520 PGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPDPASLKKLDAVENN---LE 576
Query: 209 PGTVPMANGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISLFNRKPKKGIE 268
PG++P+ANGNGDE EGSDSHSE SSE SD +TIEQRRAYKLELQEGISLFNRKPKKGIE
Sbjct: 577 PGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIE 636
Query: 269 FLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFD 328
FLINA KVG +PEEIAAFLK+AS LNKTLIGDYLGERE+L LKVMHAYVDSFDFQ MEFD
Sbjct: 637 FLINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFD 696
Query: 329 EAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHN 388
EAIR FL GFRLPGEAQKIDRIMEKFAERYCKCNPK F+SADTAYVLAYSVI+LNTD+HN
Sbjct: 697 EAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHN 756
Query: 389 PMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQMQSMNSN 448
PMVKNKMSADDFIRNNRGIDDGKDLPEE++RSL+ERIS+NEIKMK DDL QQ QS NSN
Sbjct: 757 PMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQQKQSANSN 816
Query: 449 RILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAATDVVILRFMI 508
RILGLDSILNIVIRKRGE+ YMETSDDLI+HMQEQFKEKARKSESVY+AATDVVILRFM+
Sbjct: 817 RILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMV 876
Query: 509 EACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSL 568
E CWAPMLAAFSVPLDQSDDEV+ CL+GFR+AI VTAVMSMKTHRDAFVTSLAKFTSL
Sbjct: 877 EVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSL 936
Query: 569 HSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFA 628
HSPADIKQKNIDAIKAIV+IADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFA
Sbjct: 937 HSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFA 996
Query: 629 FPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYDSAGIGGSASGVVTSEQMNN 688
PQ+ES+KSKQAKS ILPVLK+KGPG++QYAAA V RG+YDSAG+GG ASGVVTSEQMNN
Sbjct: 997 APQNESDKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNN 1056
Query: 689 LVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDPRVFSLTKI 748
LVSNLNMLEQVGS EMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRS SDPRVFSLTKI
Sbjct: 1057 LVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKI 1116
Query: 749 VEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELAN 808
VEIAHYNMNRIRLVWSSIWHVLSDFFV IGCSENLSIAIFAMDSLRQLSMKFLEREELAN
Sbjct: 1117 VEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELAN 1176
Query: 809 YNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDD 868
YNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDD
Sbjct: 1177 YNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDD 1236
Query: 869 HKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF 928
HKNIVLLAFEIIEKIIR+YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF
Sbjct: 1237 HKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF 1296
Query: 929 CATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGL 988
CATKLAEGDL +SS NKDKE PP+SP+ K+ K E+GE DKDDHLYFWFPLLAGL
Sbjct: 1297 CATKLAEGDLGSSSRNKDKE----APPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGL 1352
Query: 989 SELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGEN 1048
SELSFDPRPEIRKSALQVLF+TLRNHGHLFSLPLWERVF+SVLFPIFDYVRH IDPSG +
Sbjct: 1353 SELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGD 1412
Query: 1049 SP-GQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRP 1107
P GQGVDGD GELDQDAWLYETCTLALQLVVDLFVKFY TVNPLL+KVLMLLVSFIKRP
Sbjct: 1413 EPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRP 1472
Query: 1108 HQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKATLPDFSYLGSEDCMAEIAA 1167
HQSLAGIGIAAFVRLMSNAG+LFSDEKWLEV SLKEAA ATLPDFSY+ S + M
Sbjct: 1473 HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANATLPDFSYVVSGEYMPAENI 1532
Query: 1168 KGQINVESSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAVMEIYNMYRPCLSA 1227
+ N E++ S D+D+E R++ L+A I+DAKCRAAVQLLLIQAVMEIYNMYRP LSA
Sbjct: 1533 QDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPRLSA 1592
Query: 1228 KNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQ 1287
KNTLVLF+ALH +A HAHKINSD LRSKLQE GSMTQMQDPPLLRLENES+QICLTFLQ
Sbjct: 1593 KNTLVLFDALHTVASHAHKINSDTALRSKLQELGSMTQMQDPPLLRLENESYQICLTFLQ 1652
Query: 1288 NIILDRPPTYEEADVESHLVNLCQEVLQLYIETSNHGQTSESSASGQVRWLIPLGSGKRR 1347
N+ILD+PP +EA+VES LV LC+EVLQ YIETS GQ SE S+S Q RWLIPLGSGKRR
Sbjct: 1653 NLILDKPPLAKEAEVESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRR 1712
Query: 1348 ELAARAPLIVATLQAICTLEETSFEKNLACFFPLLSSLISCEHGSNEIQVALSDMLDASV 1407
ELAARAPL+VATLQA+C L ++SFEKNL FFPLL+ LISCEHGSNE+QVALSDML + V
Sbjct: 1713 ELAARAPLVVATLQAVCGLGDSSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWV 1772
Query: 1408 GPILLRTC 1415
GP+LL++C
Sbjct: 1773 GPVLLQSC 1780
|
Length = 1780 |
| >gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|216460 pfam01369, Sec7, Sec7 domain | Back alignment and domain information |
|---|
| >gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S | Back alignment and domain information |
|---|
| >gnl|CDD|214569 smart00222, Sec7, Sec7 domain | Back alignment and domain information |
|---|
| >gnl|CDD|221768 pfam12783, Sec7_N, Guanine nucleotide exchange factor in Golgi transport N-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|204198 pfam09324, DUF1981, Domain of unknown function (DUF1981) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1415 | |||
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 100.0 | |
| KOG0929 | 1514 | consensus Guanine nucleotide exchange factor [Intr | 100.0 | |
| KOG0928 | 1386 | consensus Pattern-formation protein/guanine nucleo | 100.0 | |
| COG5307 | 1024 | SEC7 domain proteins [General function prediction | 100.0 | |
| KOG0930 | 395 | consensus Guanine nucleotide exchange factor Cytoh | 100.0 | |
| cd00171 | 185 | Sec7 Sec7 domain; Domain named after the S. cerevi | 100.0 | |
| PF01369 | 190 | Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 do | 100.0 | |
| smart00222 | 187 | Sec7 Sec7 domain. Domain named after the S. cerevi | 100.0 | |
| KOG0931 | 627 | consensus Predicted guanine nucleotide exchange fa | 100.0 | |
| KOG1846 | 1777 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG1848 | 1610 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| KOG0932 | 774 | consensus Guanine nucleotide exchange factor EFA6 | 99.95 | |
| PF12783 | 168 | Sec7_N: Guanine nucleotide exchange factor in Golg | 99.91 | |
| PF09324 | 86 | DUF1981: Domain of unknown function (DUF1981); Int | 99.84 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.35 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 95.23 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 92.45 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 86.6 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 85.58 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 85.21 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 84.27 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 80.61 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 80.54 |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-278 Score=2703.10 Aligned_cols=1390 Identities=86% Similarity=1.284 Sum_probs=1209.8
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHhcCCCCCChhH
Q 000569 19 VEGWLIALTTRFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQ 98 (1415)
Q Consensus 19 ~~g~~~~~~~~~~~~ik~~Lc~~L~~n~~s~~~~vf~lsl~if~~l~~~~r~~lK~eievf~~~i~l~ile~~~~~~~~~ 98 (1415)
.+|++|+++|+|+++||||||++|+||++|++++||++||+|||+|+.+||.|||.||||||++||++++|++++++|+|
T Consensus 390 ~~g~~f~~~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~q 469 (1780)
T PLN03076 390 NAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQ 469 (1780)
T ss_pred cccHhhhcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987788999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhHHHHHHHHHHhhccCCCCCCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 000569 99 KMIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSM 178 (1415)
Q Consensus 99 k~~~l~~l~~l~~~p~~~velyvNYDCd~~~~ni~e~lv~~L~k~a~~~~~~~~~~~~~~~~~~l~~~~l~~l~~il~sl 178 (1415)
|+++|++|.+||+||++++|||||||||++++||||++|+.|+|+|+|.+++.+++..|+||+.||+.||+||++||+||
T Consensus 470 K~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl 549 (1780)
T PLN03076 470 KMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSM 549 (1780)
T ss_pred HHHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777777888999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCcchhhcccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHHHH
Q 000569 179 GDWMNKQLRIPDPQSTKKFEAVENISSGPEPGTVPMANGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISL 258 (1415)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~~~~~~~~ 258 (1415)
.+|+++....++.......+.... +....+.+....++++...+.++.++.+...+++++++++|++|..+++|+.+
T Consensus 550 ~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~ 626 (1780)
T PLN03076 550 GDWMNKQLRLPDPASLKKLDAVEN---NLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISL 626 (1780)
T ss_pred HHHHHhhccCCcccccccchhhcc---ccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999998765443322111111000 00000111111111111111222233334457788999999999999999999
Q ss_pred hccCchhHHHHHHHcCCCCCCHHHHHHHHHcCCCCChhHHHhhhcCCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccC
Q 000569 259 FNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGF 338 (1415)
Q Consensus 259 Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~~l~~f 338 (1415)
||+|||+||+||+++|+++++|++||+||++++||||++||||||+++++|.+||++|++.|||+|++||+|||.||++|
T Consensus 627 FN~~Pk~Gi~~L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~F 706 (1780)
T PLN03076 627 FNRKPKKGIEFLINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGF 706 (1780)
T ss_pred HccCHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhCCCCCCCccHHHHHHHHHHHhhhccCCCccCCCCCHHhHHHhhccCCCCCCCcHHHH
Q 000569 339 RLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYL 418 (1415)
Q Consensus 339 ~LpgE~q~idri~e~Fa~~y~~~n~~~f~~~d~~y~l~ysiimLntdlhn~~~k~kmt~~~Fi~n~~~~~~~~~~~~~~L 418 (1415)
|||||+|+||||||+||+|||+|||+.|.|+|+||+||||+||||||+|||++|+|||+++|+||+||+|+|+|+|+|||
T Consensus 707 rLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L 786 (1780)
T PLN03076 707 RLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFM 786 (1780)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccCcchhHHhhhhcccccccccchhhhHHHhhhhhhhhhhhhHHHHHHHHHHHHHhhccCCCceEEe
Q 000569 419 RSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAA 498 (1415)
Q Consensus 419 ~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 498 (1415)
++||++|+++||++++++.++.+++....++..|++++.+.+.|+++.++|+++++++++++++.++++.+++++.|+.+
T Consensus 787 ~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a 866 (1780)
T PLN03076 787 RSLYERISKNEIKMKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAA 866 (1780)
T ss_pred HHHHHHHHhCcccCcccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeec
Confidence 99999999999999998766554444455666788888888888888888999999999999999988777778899999
Q ss_pred chhHHHHHHHHHhHHHHHHHhhchhccCChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCCCccccch
Q 000569 499 TDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKN 578 (1415)
Q Consensus 499 ~~~e~~r~Mfe~~W~~ilaalS~~l~~s~d~~~i~~~L~g~~~~i~Ia~~~~l~~~rDafl~sL~kfT~L~~~~~l~~Kn 578 (1415)
++.+|+|+||+++|+|++||||++|++++|+++++.||+||+.+|+|||.|||+++||+||++|||||+|++|.+|++||
T Consensus 867 ~~~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~emk~Kn 946 (1780)
T PLN03076 867 TDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKN 946 (1780)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCchhhhchHHHHHHHHHHHHHHHhcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchhh
Q 000569 579 IDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQY 658 (1415)
Q Consensus 579 i~alraLl~la~~~G~~L~~sW~~IL~~isqle~lqli~~g~~~d~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 658 (1415)
++|+|+||+||+++||+|++||++||+|||||||||+++.|++||..++..|..+.+.++..++...|...++++++..+
T Consensus 947 v~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1026 (1780)
T PLN03076 947 IDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQY 1026 (1780)
T ss_pred HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccccccccccccch
Confidence 99999999999999999999999999999999999999999999877666555444444444455666666666555444
Q ss_pred hHhhhccCCccCCCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcCC
Q 000569 659 AAATVMRGAYDSAGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSAS 738 (1415)
Q Consensus 659 ~~~~~~~~s~~s~~~~~~~~~~~t~~ei~~~~~~~~~l~~i~s~~id~lF~~S~~L~~eal~~fv~ALc~vS~eel~~~~ 738 (1415)
......++++++...++..+..++++++.....++.++++|+++.+|+||++|++|+++||++||+|||+||++|+.+++
T Consensus 1027 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~ 1106 (1780)
T PLN03076 1027 AAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPS 1106 (1780)
T ss_pred hhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCC
Confidence 44444566776655555556678888988877777888889999999999999999999999999999999999999878
Q ss_pred CCceehHHHHHHHHhhccccccccchhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhh
Q 000569 739 DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKP 818 (1415)
Q Consensus 739 ~pr~F~L~kLveVa~~Nm~Ri~~~W~~iW~~L~~~f~~v~~~~n~~v~~~AvdsLrqLa~kfLe~eEl~~~~fQ~~fL~P 818 (1415)
+||+|+|+|||||++|||+|||++|+++|+++++||+++|||+|..|++||+|+||||+|||++++||++|+||++||+|
T Consensus 1107 ~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkP 1186 (1780)
T PLN03076 1107 DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKP 1186 (1780)
T ss_pred CCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhccCccccccccc
Q 000569 819 FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTT 898 (1415)
Q Consensus 819 fe~im~~s~~~eire~vL~cl~~~i~~~~~~I~SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~ 898 (1415)
|++||.++.+.+|||+|++|+.+||++++++|+||||+||+||+.|+.++++.+|+.||+++++|++|||+.++.++.++
T Consensus 1187 fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~ 1266 (1780)
T PLN03076 1187 FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTT 1266 (1780)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888666789
Q ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCcchhhhhcccccCCcchhh
Q 000569 899 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHL 978 (1415)
Q Consensus 899 f~dlI~cL~~F~~q~~d~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1415)
|.|||+||.+|++|+.++||||+||++||.|+++++++.+........ +..+..++.....+..+...+.+.+.+.
T Consensus 1267 F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1342 (1780)
T PLN03076 1267 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKD----KEAPPSSPQSGKDGKQESGEFTDKDDHL 1342 (1780)
T ss_pred HHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccc----cccccccccccccccccccccccchhHH
Confidence 999999999999999999999999999999999998876433211000 0000000110111111222334455667
Q ss_pred hhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhhhhHHhhhhhcCCCCCCCC-CCCCCCC
Q 000569 979 YFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSP-GQGVDGD 1057 (1415)
Q Consensus 979 ~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLFPif~~l~~~~~~~~~~~~-~~~~~~~ 1057 (1415)
.+|+|||++|+++++|+|+|||++||+|||+||+.||+.|++++|+.||++||||||+.++..+++....++ ++.+...
T Consensus 1343 ~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~ 1422 (1780)
T PLN03076 1343 YFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGD 1422 (1780)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999887655332211 1111111
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 000569 1058 TGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLE 1137 (1415)
Q Consensus 1058 s~~~~~~~W~~eT~~~aL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~g~~f~~~~W~~ 1137 (1415)
..+.+.++|++|||++||+++++||++||+.|.++|++++++|.+||||+||++||||++||++||.+||++|++++|++
T Consensus 1423 ~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~ 1502 (1780)
T PLN03076 1423 QGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLE 1502 (1780)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 12457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhccCcchhhhhhhccccccCCCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000569 1138 VAESLKEAAKATLPDFSYLGSEDCMAEIAAKGQINVESSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAVMEI 1217 (1415)
Q Consensus 1138 i~~~l~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kcv~qLlliq~~~~l 1217 (1415)
|+++|.++|+.|+|.|...................+....++...+.......+.+...+.++|||||+||||||++.+|
T Consensus 1503 i~~~~~~lf~~T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~~~l 1582 (1780)
T PLN03076 1503 VVLSLKEAANATLPDFSYVVSGEYMPAENIQDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAVMEI 1582 (1780)
T ss_pred HHHHHHHHHHHhCCchhhcccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999976443211100000000000000000011111111122333334566889999999999999999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhccCCCCCCCCchhhHHhhHHHHHHHHHHHhcCCCCCC
Q 000569 1218 YNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRPPTY 1297 (1415)
Q Consensus 1218 ~~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~LR~~L~k~g~~~~~~~PnLLkQE~~s~~~yl~iL~~l~~d~~~~~ 1297 (1415)
|++++.+||++|+.+|+++|++||+|||+||+|++||++|||+|||+++++|||||||++|+++||+|||+||+|+++.+
T Consensus 1583 ~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~~g~~~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~~~ 1662 (1780)
T PLN03076 1583 YNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALRSKLQELGSMTQMQDPPLLRLENESYQICLTFLQNLILDKPPLA 1662 (1780)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcccCCCCchhhHhHHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cHHhHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCchhhhhhhhhhHHHHHHHHHhcCChHHHHhhhhh
Q 000569 1298 EEADVESHLVNLCQEVLQLYIETSNHGQTSESSASGQVRWLIPLGSGKRRELAARAPLIVATLQAICTLEETSFEKNLAC 1377 (1415)
Q Consensus 1298 ~~~~i~~~L~~lc~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~aw~pvvv~iL~~l~~l~~~~F~~~~~~ 1377 (1415)
.+.++|+||+++|.+||++|+++++.+++++..++.+++|.+|+|++++||++||+||||+||+||++|||++|++|+|.
T Consensus 1663 ~~~~~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~~~~~ 1742 (1780)
T PLN03076 1663 KEAEVESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEKNLVR 1742 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHHHHHH
Confidence 89999999999999999999999974443333345668999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccCCChhHHHHHHHHHHhhhhhhhhccC
Q 000569 1378 FFPLLSSLISCEHGSNEIQVALSDMLDASVGPILLRTC 1415 (1415)
Q Consensus 1378 ~ypll~~L~~~~~~~~elr~aL~~~f~~rvg~~~~~~~ 1415 (1415)
||||+|+|++||+.++|||.||+.+|++||||+++++|
T Consensus 1743 ~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~~~~~~ 1780 (1780)
T PLN03076 1743 FFPLLAGLISCEHGSNEVQVALSDMLSSWVGPVLLQSC 1780 (1780)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhhHhccC
Confidence 99999999999888999999999999779999999998
|
|
| >KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5307 SEC7 domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd00171 Sec7 Sec7 domain; Domain named after the S | Back alignment and domain information |
|---|
| >PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region [] | Back alignment and domain information |
|---|
| >smart00222 Sec7 Sec7 domain | Back alignment and domain information |
|---|
| >KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1848 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal | Back alignment and domain information |
|---|
| >PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1415 | ||||
| 1r8q_E | 203 | Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A | 7e-57 | ||
| 1r8s_E | 203 | Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain C | 2e-56 | ||
| 3ltl_A | 211 | Crystal Structure Of Human Big1 Sec7 Domain Length | 1e-55 | ||
| 1r8m_E | 203 | Sec7 Domain Of The Arf Exchange Factor Arno With Br | 2e-55 | ||
| 1pbv_A | 195 | Sec7 Domain Of The Exchange Factor Arno Length = 19 | 9e-54 | ||
| 3l8n_A | 202 | Crystal Structure Of A Domain Of Brefeldin A-Inhibi | 1e-51 | ||
| 1bc9_A | 200 | Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average | 1e-51 | ||
| 4a4p_A | 192 | Crystal Structure Of The Sec7 Domain From Human Cyt | 2e-51 | ||
| 2r0d_A | 347 | Crystal Structure Of Autoinhibited Form Of Grp1 Arf | 2e-50 | ||
| 2r09_A | 347 | Crystal Structure Of Autoinhibited Form Of Grp1 Arf | 2e-49 | ||
| 1re0_B | 221 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 6e-30 | ||
| 1xsz_A | 356 | The Structure Of Ralf Length = 356 | 2e-29 | ||
| 1ku1_A | 230 | Crystal Structure Of The Sec7 Domain Of Yeast Gea2 | 2e-28 | ||
| 1xt0_B | 203 | The Structure Of N-Terminal Sec7 Domain Of Ralf Len | 4e-28 |
| >pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A Sec7 Domain Length = 203 | Back alignment and structure |
|
| >pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying The Mutation Of The Catalytic Glutamate To Lysine Length = 203 | Back alignment and structure |
| >pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain Length = 211 | Back alignment and structure |
| >pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin A- Sensitizing Mutations Length = 203 | Back alignment and structure |
| >pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno Length = 195 | Back alignment and structure |
| >pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited Guanine Nucleotide-Exchange Protein 2 (Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human). Northeast Structural Genomics Consortium Target Id Hr5562a Length = 202 | Back alignment and structure |
| >pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average Structure Length = 200 | Back alignment and structure |
| >pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1 Length = 192 | Back alignment and structure |
| >pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347 | Back alignment and structure |
| >pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347 | Back alignment and structure |
| >pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 221 | Back alignment and structure |
| >pdb|1XSZ|A Chain A, The Structure Of Ralf Length = 356 | Back alignment and structure |
| >pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2 Length = 230 | Back alignment and structure |
| >pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf Length = 203 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Length = 356 | Back alignment and structure |
|---|
Score = 314 bits (806), Expect = 6e-97
Identities = 87/359 (24%), Positives = 139/359 (38%), Gaps = 33/359 (9%)
Query: 240 STIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKK--VGNTPEEIAAFL-KNASDLNKT 296
S E +A + E I FN KPK GI + + + EEIA F + +L+
Sbjct: 3 SHPEIEKAQR----EIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLE 58
Query: 297 LIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAE 356
+GDYL E +V+ A+ +F F E +R FL F+LPGEAQKIDR+++ F+
Sbjct: 59 AVGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSG 118
Query: 357 RYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMV--KNKMSADDFIRNNRGIDDGKDLP 414
Y + NP V ++AD AY+LA+ I+LNTD HNP + KNKM+ D RN RG ++G D
Sbjct: 119 AYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFD 178
Query: 415 EEYLRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSD 474
++L L+ I ++ + + + D
Sbjct: 179 AKFLEELYSEIKAKPFELNFVKTSPGYELTSTTLN-----------------------KD 215
Query: 475 DLIRHMQEQFKEKARKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIAL 534
+ + +V+ D V W + + +D++
Sbjct: 216 STFKKLDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQA 275
Query: 535 CLQGFRYAIRVTAVMSMKTHR-DAFVTSLAKFTSLHSPADIKQKNIDAIKAIVTIADED 592
+Q + I + + + A + KA D
Sbjct: 276 TIQVYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGD 334
|
| >1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Length = 203 | Back alignment and structure |
|---|
| >3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} PDB: 3l8n_A 3swv_A Length = 211 | Back alignment and structure |
|---|
| >2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347 | Back alignment and structure |
|---|
| >1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* Length = 230 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1415 | ||||
| d1r8se_ | 187 | a.118.3.1 (E:) Exchange factor ARNO {Human (Homo s | 7e-79 | |
| d1xsza1 | 197 | a.118.3.1 (A:1-197) RalF, N-terminal domain {Legio | 7e-74 | |
| d1ku1a_ | 211 | a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 | 4e-73 |
| >d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Length = 187 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Sec7 domain family: Sec7 domain domain: Exchange factor ARNO species: Human (Homo sapiens) [TaxId: 9606]
Score = 255 bits (653), Expect = 7e-79
Identities = 105/185 (56%), Positives = 132/185 (71%)
Query: 251 ELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPL 310
++ G FN PKKGI+FL+ + + NTPEEIA FL LNKT IGDYLGEREEL L
Sbjct: 3 KMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNL 62
Query: 311 KVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSAD 370
V+HA+VD +F + +A+R FL FRLPG+AQKIDR+ME FA+RYC CNP VF S D
Sbjct: 63 AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTD 122
Query: 371 TAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEI 430
T YVL+YSVI+LNTD HNP V++KM + F+ NRGI++G DLPEE LR+L++ I
Sbjct: 123 TCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPF 182
Query: 431 KMKGD 435
K+ D
Sbjct: 183 KIPED 187
|
| >d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Length = 197 | Back information, alignment and structure |
|---|
| >d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 211 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1415 | |||
| d1ku1a_ | 211 | ARF guanine-exchange factor 2, Gea2 {Baker's yeast | 100.0 | |
| d1r8se_ | 187 | Exchange factor ARNO {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1xsza1 | 197 | RalF, N-terminal domain {Legionella pneumophila [T | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.6 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 97.08 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 96.62 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 95.37 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 94.89 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 93.84 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 93.63 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 92.22 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 89.62 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 83.58 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 83.18 |
| >d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Sec7 domain family: Sec7 domain domain: ARF guanine-exchange factor 2, Gea2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=443.87 Aligned_cols=186 Identities=42% Similarity=0.687 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC-CHHHHHHHHH-CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 997999999999960595247999998299999-9899999977-07999956787330378851199999998528999
Q 000569 246 RAYKLELQEGISLFNRKPKKGIEFLINAKKVGN-TPEEIAAFLK-NASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQ 323 (1415)
Q Consensus 246 k~~K~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~-~p~~ia~fL~-~~~~l~k~~ige~lg~~~~~~~~vl~~y~~~~~f~ 323 (1415)
++||..+.+|+.+||+||++||+||+++|++++ +|++||+||+ .+++|||++||||||+++ |.+||++|++.|||+
T Consensus 9 ~~rK~~~~~~v~~FN~~pk~Gi~~L~~~~~i~~~~~~~iA~FL~~~~~~Ldk~~iGeyLg~~~--n~~vL~~y~~~fdf~ 86 (211)
T d1ku1a_ 9 MDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEYIRLFDFS 86 (211)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHHHHCCCCC
T ss_conf 999999999999980499999999998888499998999999986578889899999977984--689999998524768
Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9886899999862487898659999999999999965199---------------9989910899999999873103689
Q 000569 324 RMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNP---------------KVFTSADTAYVLAYSVILLNTDSHN 388 (1415)
Q Consensus 324 ~~~~~~aLR~fl~~frLpgE~q~idri~e~Fa~~y~~~np---------------~~f~~~d~~y~l~~siimLntdlhn 388 (1415)
|++||+|||.||.+||||||+|+|||+|++||++||+||| ..|.++|++|+|+||+||||||+||
T Consensus 87 ~~~id~ALR~~l~~f~LPgEaQ~IdRile~Fa~~Y~~~N~~~~~~~~~~~~~~~~~~f~s~d~~y~L~ysiimLnTdlHn 166 (211)
T d1ku1a_ 87 GLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLNTDLHN 166 (211)
T ss_dssp TCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99789999999984508860899999999984999962888841000000001111225710899999999997002038
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 745799998868873136789999949999999999760645556
Q 000569 389 PMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMK 433 (1415)
Q Consensus 389 ~~~k~kmt~~~Fi~n~~g~~~~~d~~~~~L~~iY~~i~~~~i~~~ 433 (1415)
|++|+|||+++||+|+||+|+|+|+|+++|++||++|+++||+||
T Consensus 167 p~vk~kMt~~~Fi~n~rgin~~~d~~~e~L~~iY~~I~~~ei~lP 211 (211)
T d1ku1a_ 167 PQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMP 211 (211)
T ss_dssp TTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 755678899999999866767788999999999999985877799
|
| >d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|